Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423740 | KEH41184.1 | 70.859 | 326 | 73 | 4 | 12 | 335 | 1 | 306 | 1.74e-143 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423740 | A0A072VGK8 | 70.859 | 326 | 73 | 4 | 12 | 335 | 1 | 306 | 8.29e-144 | 419 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0423740 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0423740 | Msa0808810 | 0.845816 | 3.207679e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423740 | MtrunA17_Chr1g0169171 | 70.648 | 293 | 64 | 4 | 45 | 335 | 1 | 273 | 5.17e-129 | 371 |
| Msa0423740 | MtrunA17_Chr1g0169161 | 60.736 | 326 | 105 | 3 | 12 | 335 | 1 | 305 | 2.17e-114 | 335 |
| Msa0423740 | MtrunA17_Chr3g0125161 | 88.095 | 126 | 15 | 0 | 8 | 133 | 8 | 133 | 5.78e-74 | 226 |
| Msa0423740 | MtrunA17_Chr3g0125151 | 86.458 | 96 | 13 | 0 | 240 | 335 | 1 | 96 | 7.85e-59 | 186 |
| Msa0423740 | MtrunA17_Chr1g0169081 | 72.222 | 108 | 30 | 0 | 16 | 123 | 2 | 109 | 5.96e-44 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAGTGTTGGTCATAATT+TGG | 0.253758 | 3_2:+73721440 | None:intergenic |
| ATTTCATCATCTTCAAGTTT+TGG | 0.269280 | 3_2:+73720496 | None:intergenic |
| GCATAGAAGTATGGATTTCC+TGG | 0.326303 | 3_2:+73720451 | None:intergenic |
| AGAGAGGAGAAATACGTAAA+TGG | 0.332365 | 3_2:-73719894 | Msa0423740:CDS |
| CAGAGAAGAAAATTCATTAG+AGG | 0.353395 | 3_2:-73721029 | Msa0423740:CDS |
| ATGAGCTTCACAAAAGCAAT+TGG | 0.382357 | 3_2:+73721172 | None:intergenic |
| CGCGTCAAAGCACATTCAAT+TGG | 0.401347 | 3_2:-73721088 | Msa0423740:CDS |
| TATGTTGGAGGATGAGGAAG+AGG | 0.406388 | 3_2:-73720891 | Msa0423740:CDS |
| TAATAATATGTTGGAGGATG+AGG | 0.419640 | 3_2:-73720897 | Msa0423740:CDS |
| ACATTACAGACCCAACGAAT+TGG | 0.430909 | 3_2:-73720425 | Msa0423740:intron |
| GTATGTGTTGTGTTGATTTG+TGG | 0.448016 | 3_2:+73719922 | None:intergenic |
| CCTTGCAGTGGCAACATACA+AGG | 0.465539 | 3_2:+73720101 | None:intergenic |
| GATTGTGGTTTAGGGAGCAT+TGG | 0.466163 | 3_2:-73720535 | Msa0423740:intron |
| CTGTCTTATAATTTGAATGT+TGG | 0.471083 | 3_2:-73721478 | None:intergenic |
| AAGAACTAAACCAATTCGTT+GGG | 0.487807 | 3_2:+73720415 | None:intergenic |
| ATGAAAGCAGAAAAGAAGAA+AGG | 0.488071 | 3_2:-73720707 | Msa0423740:CDS |
| AAAGAACTAAACCAATTCGT+TGG | 0.488811 | 3_2:+73720414 | None:intergenic |
| CTCTTCCTCTATGATCCCTT+AGG | 0.492258 | 3_2:+73721116 | None:intergenic |
| TTGTGGCAATATGTGATGAT+AGG | 0.496982 | 3_2:+73719939 | None:intergenic |
| GGAGGAAAATAATAATATGT+TGG | 0.500575 | 3_2:-73720906 | Msa0423740:CDS |
| TCTCATAATGCTTCTCTATG+AGG | 0.504327 | 3_2:+73721389 | None:intergenic |
| GGGATCATAGAGGAAGAGAT+TGG | 0.510517 | 3_2:-73721111 | Msa0423740:CDS |
| AAGCACATTCAATTGGTGGC+AGG | 0.516729 | 3_2:-73721081 | Msa0423740:CDS |
| AATGGTAGAGGAAGAAGAAG+AGG | 0.518113 | 3_2:-73720813 | Msa0423740:CDS |
| AAGAAGAAAGGAGTTGACAA+GGG | 0.522584 | 3_2:-73720695 | Msa0423740:CDS |
| GAAATACGTAAATGGAAAGA+TGG | 0.523151 | 3_2:-73719886 | Msa0423740:CDS |
| CGATGATGAGGATGAGGATG+AGG | 0.525411 | 3_2:-73720756 | Msa0423740:CDS |
| AGAGAAGCATTATGAGAGAA+TGG | 0.527328 | 3_2:-73721383 | Msa0423740:intron |
| GGAAAATAATAATATGTTGG+AGG | 0.527415 | 3_2:-73720903 | Msa0423740:CDS |
| GAAGAGGAAGAAGATGAAGA+TGG | 0.532114 | 3_2:-73720797 | Msa0423740:CDS |
| GTTGAAATGTATATTCAGCC+AGG | 0.532204 | 3_2:-73720469 | Msa0423740:CDS |
| TTGGAGGATGAGGAAGAGGA+AGG | 0.540476 | 3_2:-73720887 | Msa0423740:CDS |
| TGAAGACGATGATGAGGATG+AGG | 0.541376 | 3_2:-73720762 | Msa0423740:CDS |
| AAAGAAGAAAGGAGTTGACA+AGG | 0.542225 | 3_2:-73720696 | Msa0423740:CDS |
| TGAGCTTCACAAAAGCAATT+GGG | 0.545679 | 3_2:+73721173 | None:intergenic |
| GTCAAAGCACATTCAATTGG+TGG | 0.546694 | 3_2:-73721085 | Msa0423740:CDS |
| AAAGACAAAGGTAATGGATG+AGG | 0.553323 | 3_2:-73720927 | Msa0423740:CDS |
| TTTCAATATGTGTGAAAACA+AGG | 0.554136 | 3_2:+73720996 | None:intergenic |
| GACAAAGGTAATGGATGAGG+AGG | 0.556485 | 3_2:-73720924 | Msa0423740:CDS |
| GAGGAACACCTTGGCAGTGT+TGG | 0.557953 | 3_2:+73721429 | None:intergenic |
| AGCTCATGCTTTCGAAACAA+AGG | 0.561664 | 3_2:-73721156 | Msa0423740:CDS |
| GGAAGACTTTGAAGAAGTTG+AGG | 0.564880 | 3_2:+73721410 | None:intergenic |
| GCTCATGCTTTCGAAACAAA+GGG | 0.566004 | 3_2:-73721155 | Msa0423740:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.576526 | 3_2:-73720101 | Msa0423740:intron |
| GATGATGATGATGGTGATGG+TGG | 0.586203 | 3_2:-73720863 | Msa0423740:CDS |
| TTGTGCGAAGTTGTGTTGCA+TGG | 0.595631 | 3_2:-73719797 | Msa0423740:CDS |
| GAAGAAGTTGAGGAACACCT+TGG | 0.598409 | 3_2:+73721420 | None:intergenic |
| CGACGGTTATACAATGGTAG+AGG | 0.603192 | 3_2:-73720825 | Msa0423740:CDS |
| TGATATGCTTTGTAAAGCAA+AGG | 0.607441 | 3_2:+73720125 | None:intergenic |
| TTTATCCTAAGGGATCATAG+AGG | 0.616153 | 3_2:-73721121 | Msa0423740:CDS |
| AATTATGACCAACACTGCCA+AGG | 0.625272 | 3_2:-73721437 | Msa0423740:CDS |
| TGATGATGAAGACGATGATG+AGG | 0.632639 | 3_2:-73720768 | Msa0423740:CDS |
| GAAGAAGATGAAGATGGTGA+TGG | 0.640201 | 3_2:-73720791 | Msa0423740:CDS |
| GAGGAAGGTGATGATGATGA+TGG | 0.640863 | 3_2:-73720872 | Msa0423740:CDS |
| GGAGATGATGACGACGACGA+CGG | 0.642946 | 3_2:-73720842 | Msa0423740:CDS |
| ATAACAATTATACCTTGCAG+TGG | 0.648271 | 3_2:+73720089 | None:intergenic |
| GGTGATGATGATGATGGTGA+TGG | 0.656321 | 3_2:-73720866 | Msa0423740:CDS |
| ACAACACATACCGAAAAGAG+AGG | 0.656927 | 3_2:-73719910 | Msa0423740:CDS |
| CTTGCAGTGGCAACATACAA+GGG | 0.670891 | 3_2:+73720102 | None:intergenic |
| CGACGACGACGGTTATACAA+TGG | 0.687539 | 3_2:-73720831 | Msa0423740:CDS |
| TGCGAAGTTGTGTTGCATGG+AGG | 0.718120 | 3_2:-73719794 | Msa0423740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAGTTTTTTTTTTTTTTTTT+TGG | + | chr3_2:73719995-73720014 | None:intergenic | 10.0% |
| !!! | CAGTTTTTTTTTTTTTTTTT+TGG | + | chr3_2:73719995-73720014 | None:intergenic | 10.0% |
| !!! | TATTTTAAAGAATGTTGTTA+AGG | - | chr3_2:73721094-73721113 | Msa0423740:CDS | 15.0% |
| !! | TTCATAATTGTAACAAAAAA+AGG | + | chr3_2:73721193-73721212 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTACAATTATGA+AGG | - | chr3_2:73721192-73721211 | Msa0423740:intron | 15.0% |
| !!! | TTTTTTGTTACAATTATGAA+GGG | - | chr3_2:73721193-73721212 | Msa0423740:intron | 15.0% |
| !!! | TATTTTAAAGAATGTTGTTA+AGG | - | chr3_2:73721094-73721113 | Msa0423740:CDS | 15.0% |
| !! | TTCATAATTGTAACAAAAAA+AGG | + | chr3_2:73721193-73721212 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTACAATTATGA+AGG | - | chr3_2:73721192-73721211 | Msa0423740:intron | 15.0% |
| !!! | TTTTTTGTTACAATTATGAA+GGG | - | chr3_2:73721193-73721212 | Msa0423740:intron | 15.0% |
| !! | AACTTAATAATAATAATCGG+AGG | + | chr3_2:73719917-73719936 | None:intergenic | 20.0% |
| !!! | TATTGCAATATTTTATCCTA+AGG | - | chr3_2:73720117-73720136 | Msa0423740:CDS | 20.0% |
| !!! | ATTGCAATATTTTATCCTAA+GGG | - | chr3_2:73720118-73720137 | Msa0423740:CDS | 20.0% |
| !! | AACTTAATAATAATAATCGG+AGG | + | chr3_2:73719917-73719936 | None:intergenic | 20.0% |
| !!! | TATTGCAATATTTTATCCTA+AGG | - | chr3_2:73720117-73720136 | Msa0423740:CDS | 20.0% |
| !!! | ATTGCAATATTTTATCCTAA+GGG | - | chr3_2:73720118-73720137 | Msa0423740:CDS | 20.0% |
| ! | TTTCAATATGTGTGAAAACA+AGG | + | chr3_2:73720256-73720275 | None:intergenic | 25.0% |
| ! | ATCAATGTGTAAAAAGACAA+AGG | - | chr3_2:73720310-73720329 | Msa0423740:intron | 25.0% |
| ! | GGAGGAAAATAATAATATGT+TGG | - | chr3_2:73720343-73720362 | Msa0423740:intron | 25.0% |
| ! | GGAAAATAATAATATGTTGG+AGG | - | chr3_2:73720346-73720365 | Msa0423740:intron | 25.0% |
| ! | ATTTACCTAATGATTGATTG+TGG | - | chr3_2:73720699-73720718 | Msa0423740:CDS | 25.0% |
| ! | TAATGATTGATTGTGGTTTA+GGG | - | chr3_2:73720706-73720725 | Msa0423740:CDS | 25.0% |
| !!! | ATTTCATCATCTTCAAGTTT+TGG | + | chr3_2:73720756-73720775 | None:intergenic | 25.0% |
| !! | TAATGTTTTGCATAGAAGTA+TGG | + | chr3_2:73720810-73720829 | None:intergenic | 25.0% |
| ! | GAAGGAAAGAAAAAATGTAA+CGG | + | chr3_2:73721039-73721058 | None:intergenic | 25.0% |
| ! | AATTGTAACAAAAAAAGGCA+AGG | + | chr3_2:73721188-73721207 | None:intergenic | 25.0% |
| !!! | TTCATCTTTTTTGTTATCAC+AGG | - | chr3_2:73721263-73721282 | Msa0423740:intron | 25.0% |
| ! | TTTCAATATGTGTGAAAACA+AGG | + | chr3_2:73720256-73720275 | None:intergenic | 25.0% |
| ! | ATCAATGTGTAAAAAGACAA+AGG | - | chr3_2:73720310-73720329 | Msa0423740:intron | 25.0% |
| ! | GGAGGAAAATAATAATATGT+TGG | - | chr3_2:73720343-73720362 | Msa0423740:intron | 25.0% |
| ! | GGAAAATAATAATATGTTGG+AGG | - | chr3_2:73720346-73720365 | Msa0423740:intron | 25.0% |
| ! | ATTTACCTAATGATTGATTG+TGG | - | chr3_2:73720699-73720718 | Msa0423740:CDS | 25.0% |
| ! | TAATGATTGATTGTGGTTTA+GGG | - | chr3_2:73720706-73720725 | Msa0423740:CDS | 25.0% |
| !!! | ATTTCATCATCTTCAAGTTT+TGG | + | chr3_2:73720756-73720775 | None:intergenic | 25.0% |
| !! | TAATGTTTTGCATAGAAGTA+TGG | + | chr3_2:73720810-73720829 | None:intergenic | 25.0% |
| ! | GAAGGAAAGAAAAAATGTAA+CGG | + | chr3_2:73721039-73721058 | None:intergenic | 25.0% |
| ! | AATTGTAACAAAAAAAGGCA+AGG | + | chr3_2:73721188-73721207 | None:intergenic | 25.0% |
| !!! | TTCATCTTTTTTGTTATCAC+AGG | - | chr3_2:73721263-73721282 | Msa0423740:intron | 25.0% |
| ! | AGATCAATGTTACTTAAGAG+TGG | + | chr3_2:73720024-73720043 | None:intergenic | 30.0% |
| CAGAGAAGAAAATTCATTAG+AGG | - | chr3_2:73720220-73720239 | Msa0423740:intron | 30.0% | |
| GTGTAAAAAGACAAAGGTAA+TGG | - | chr3_2:73720316-73720335 | Msa0423740:intron | 30.0% | |
| TAATAATATGTTGGAGGATG+AGG | - | chr3_2:73720352-73720371 | Msa0423740:intron | 30.0% | |
| ATGAAAGCAGAAAAGAAGAA+AGG | - | chr3_2:73720542-73720561 | Msa0423740:intron | 30.0% | |
| CAAAAACATACATGCTTTGA+AGG | + | chr3_2:73720615-73720634 | None:intergenic | 30.0% | |
| CTAAACCACAATCAATCATT+AGG | + | chr3_2:73720707-73720726 | None:intergenic | 30.0% | |
| CTAATGATTGATTGTGGTTT+AGG | - | chr3_2:73720705-73720724 | Msa0423740:CDS | 30.0% | |
| AAGAACTAAACCAATTCGTT+GGG | + | chr3_2:73720837-73720856 | None:intergenic | 30.0% | |
| AAAGAACTAAACCAATTCGT+TGG | + | chr3_2:73720838-73720857 | None:intergenic | 30.0% | |
| ! | TAGCTCATTTTCTTAAGCTT+AGG | - | chr3_2:73720955-73720974 | Msa0423740:CDS | 30.0% |
| ! | AGCTCATTTTCTTAAGCTTA+GGG | - | chr3_2:73720956-73720975 | Msa0423740:CDS | 30.0% |
| TGATATGCTTTGTAAAGCAA+AGG | + | chr3_2:73721127-73721146 | None:intergenic | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | + | chr3_2:73721163-73721182 | None:intergenic | 30.0% | |
| ACAAAAAAGATGAATGCAAC+TGG | + | chr3_2:73721257-73721276 | None:intergenic | 30.0% | |
| GAAATACGTAAATGGAAAGA+TGG | - | chr3_2:73721363-73721382 | Msa0423740:intron | 30.0% | |
| ! | AGATCAATGTTACTTAAGAG+TGG | + | chr3_2:73720024-73720043 | None:intergenic | 30.0% |
| CAGAGAAGAAAATTCATTAG+AGG | - | chr3_2:73720220-73720239 | Msa0423740:intron | 30.0% | |
| GTGTAAAAAGACAAAGGTAA+TGG | - | chr3_2:73720316-73720335 | Msa0423740:intron | 30.0% | |
| TAATAATATGTTGGAGGATG+AGG | - | chr3_2:73720352-73720371 | Msa0423740:intron | 30.0% | |
| ATGAAAGCAGAAAAGAAGAA+AGG | - | chr3_2:73720542-73720561 | Msa0423740:intron | 30.0% | |
| CAAAAACATACATGCTTTGA+AGG | + | chr3_2:73720615-73720634 | None:intergenic | 30.0% | |
| CTAAACCACAATCAATCATT+AGG | + | chr3_2:73720707-73720726 | None:intergenic | 30.0% | |
| CTAATGATTGATTGTGGTTT+AGG | - | chr3_2:73720705-73720724 | Msa0423740:CDS | 30.0% | |
| AAGAACTAAACCAATTCGTT+GGG | + | chr3_2:73720837-73720856 | None:intergenic | 30.0% | |
| AAAGAACTAAACCAATTCGT+TGG | + | chr3_2:73720838-73720857 | None:intergenic | 30.0% | |
| ! | TAGCTCATTTTCTTAAGCTT+AGG | - | chr3_2:73720955-73720974 | Msa0423740:CDS | 30.0% |
| ! | AGCTCATTTTCTTAAGCTTA+GGG | - | chr3_2:73720956-73720975 | Msa0423740:CDS | 30.0% |
| TGATATGCTTTGTAAAGCAA+AGG | + | chr3_2:73721127-73721146 | None:intergenic | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | + | chr3_2:73721163-73721182 | None:intergenic | 30.0% | |
| ACAAAAAAGATGAATGCAAC+TGG | + | chr3_2:73721257-73721276 | None:intergenic | 30.0% | |
| GAAATACGTAAATGGAAAGA+TGG | - | chr3_2:73721363-73721382 | Msa0423740:intron | 30.0% | |
| TCTCATAATGCTTCTCTATG+AGG | + | chr3_2:73719863-73719882 | None:intergenic | 35.0% | |
| !! | AGAGAAGCATTATGAGAGAA+TGG | - | chr3_2:73719866-73719885 | Msa0423740:CDS | 35.0% |
| TGAGCTTCACAAAAGCAATT+GGG | + | chr3_2:73720079-73720098 | None:intergenic | 35.0% | |
| ATGAGCTTCACAAAAGCAAT+TGG | + | chr3_2:73720080-73720099 | None:intergenic | 35.0% | |
| TTTATCCTAAGGGATCATAG+AGG | - | chr3_2:73720128-73720147 | Msa0423740:CDS | 35.0% | |
| !!! | GGCTTTATTTTGATGATGGT+TGG | - | chr3_2:73720189-73720208 | Msa0423740:intron | 35.0% |
| !! | AAAGACAAAGGTAATGGATG+AGG | - | chr3_2:73720322-73720341 | Msa0423740:intron | 35.0% |
| AAAGAAGAAAGGAGTTGACA+AGG | - | chr3_2:73720553-73720572 | Msa0423740:intron | 35.0% | |
| AAGAAGAAAGGAGTTGACAA+GGG | - | chr3_2:73720554-73720573 | Msa0423740:intron | 35.0% | |
| GTTGAAATGTATATTCAGCC+AGG | - | chr3_2:73720780-73720799 | Msa0423740:CDS | 35.0% | |
| ! | ATTTTCTTAAGCTTAGGGTG+AGG | - | chr3_2:73720961-73720980 | Msa0423740:CDS | 35.0% |
| ! | CGGTTGTAAAAGCTTGTTTA+GGG | + | chr3_2:73721019-73721038 | None:intergenic | 35.0% |
| ! | ACGGTTGTAAAAGCTTGTTT+AGG | + | chr3_2:73721020-73721039 | None:intergenic | 35.0% |
| TTCTTTCCTTCATGTGCTTA+TGG | - | chr3_2:73721048-73721067 | Msa0423740:CDS | 35.0% | |
| GTAATACCATAAGCACATGA+AGG | + | chr3_2:73721057-73721076 | None:intergenic | 35.0% | |
| TTGTGGCAATATGTGATGAT+AGG | + | chr3_2:73721313-73721332 | None:intergenic | 35.0% | |
| !! | GTATGTGTTGTGTTGATTTG+TGG | + | chr3_2:73721330-73721349 | None:intergenic | 35.0% |
| ! | ACGTATTTCTCCTCTCTTTT+CGG | + | chr3_2:73721352-73721371 | None:intergenic | 35.0% |
| AGAGAGGAGAAATACGTAAA+TGG | - | chr3_2:73721355-73721374 | Msa0423740:intron | 35.0% | |
| TCTCATAATGCTTCTCTATG+AGG | + | chr3_2:73719863-73719882 | None:intergenic | 35.0% | |
| !! | AGAGAAGCATTATGAGAGAA+TGG | - | chr3_2:73719866-73719885 | Msa0423740:CDS | 35.0% |
| TGAGCTTCACAAAAGCAATT+GGG | + | chr3_2:73720079-73720098 | None:intergenic | 35.0% | |
| ATGAGCTTCACAAAAGCAAT+TGG | + | chr3_2:73720080-73720099 | None:intergenic | 35.0% | |
| TTTATCCTAAGGGATCATAG+AGG | - | chr3_2:73720128-73720147 | Msa0423740:CDS | 35.0% | |
| !!! | GGCTTTATTTTGATGATGGT+TGG | - | chr3_2:73720189-73720208 | Msa0423740:intron | 35.0% |
| !! | AAAGACAAAGGTAATGGATG+AGG | - | chr3_2:73720322-73720341 | Msa0423740:intron | 35.0% |
| AAAGAAGAAAGGAGTTGACA+AGG | - | chr3_2:73720553-73720572 | Msa0423740:intron | 35.0% | |
| AAGAAGAAAGGAGTTGACAA+GGG | - | chr3_2:73720554-73720573 | Msa0423740:intron | 35.0% | |
| GTTGAAATGTATATTCAGCC+AGG | - | chr3_2:73720780-73720799 | Msa0423740:CDS | 35.0% | |
| ! | ATTTTCTTAAGCTTAGGGTG+AGG | - | chr3_2:73720961-73720980 | Msa0423740:CDS | 35.0% |
| ! | CGGTTGTAAAAGCTTGTTTA+GGG | + | chr3_2:73721019-73721038 | None:intergenic | 35.0% |
| ! | ACGGTTGTAAAAGCTTGTTT+AGG | + | chr3_2:73721020-73721039 | None:intergenic | 35.0% |
| TTCTTTCCTTCATGTGCTTA+TGG | - | chr3_2:73721048-73721067 | Msa0423740:CDS | 35.0% | |
| GTAATACCATAAGCACATGA+AGG | + | chr3_2:73721057-73721076 | None:intergenic | 35.0% | |
| TTGTGGCAATATGTGATGAT+AGG | + | chr3_2:73721313-73721332 | None:intergenic | 35.0% | |
| !! | GTATGTGTTGTGTTGATTTG+TGG | + | chr3_2:73721330-73721349 | None:intergenic | 35.0% |
| ! | ACGTATTTCTCCTCTCTTTT+CGG | + | chr3_2:73721352-73721371 | None:intergenic | 35.0% |
| AGAGAGGAGAAATACGTAAA+TGG | - | chr3_2:73721355-73721374 | Msa0423740:intron | 35.0% | |
| !! | TGGCAGTGTTGGTCATAATT+TGG | + | chr3_2:73719812-73719831 | None:intergenic | 40.0% |
| AATTATGACCAACACTGCCA+AGG | - | chr3_2:73719812-73719831 | Msa0423740:CDS | 40.0% | |
| ! | GGAAGACTTTGAAGAAGTTG+AGG | + | chr3_2:73719842-73719861 | None:intergenic | 40.0% |
| AGCTCATGCTTTCGAAACAA+AGG | - | chr3_2:73720093-73720112 | Msa0423740:intron | 40.0% | |
| GCTCATGCTTTCGAAACAAA+GGG | - | chr3_2:73720094-73720113 | Msa0423740:intron | 40.0% | |
| GTCAAAGCACATTCAATTGG+TGG | - | chr3_2:73720164-73720183 | Msa0423740:intron | 40.0% | |
| !!! | GGCAGGCTTTATTTTGATGA+TGG | - | chr3_2:73720185-73720204 | Msa0423740:intron | 40.0% |
| AATGGTAGAGGAAGAAGAAG+AGG | - | chr3_2:73720436-73720455 | Msa0423740:CDS | 40.0% | |
| GAAGAGGAAGAAGATGAAGA+TGG | - | chr3_2:73720452-73720471 | Msa0423740:CDS | 40.0% | |
| GAAGAAGATGAAGATGGTGA+TGG | - | chr3_2:73720458-73720477 | Msa0423740:CDS | 40.0% | |
| ! | TGATGATGAAGACGATGATG+AGG | - | chr3_2:73720481-73720500 | Msa0423740:CDS | 40.0% |
| ! | GCATAGAAGTATGGATTTCC+TGG | + | chr3_2:73720801-73720820 | None:intergenic | 40.0% |
| ACATTACAGACCCAACGAAT+TGG | - | chr3_2:73720824-73720843 | Msa0423740:CDS | 40.0% | |
| ACAACACATACCGAAAAGAG+AGG | - | chr3_2:73721339-73721358 | Msa0423740:intron | 40.0% | |
| ! | ATGGTCGAGTTTTTGTGCTA+GGG | - | chr3_2:73721382-73721401 | Msa0423740:intron | 40.0% |
| !! | TGGCAGTGTTGGTCATAATT+TGG | + | chr3_2:73719812-73719831 | None:intergenic | 40.0% |
| AATTATGACCAACACTGCCA+AGG | - | chr3_2:73719812-73719831 | Msa0423740:CDS | 40.0% | |
| ! | GGAAGACTTTGAAGAAGTTG+AGG | + | chr3_2:73719842-73719861 | None:intergenic | 40.0% |
| AGCTCATGCTTTCGAAACAA+AGG | - | chr3_2:73720093-73720112 | Msa0423740:intron | 40.0% | |
| GCTCATGCTTTCGAAACAAA+GGG | - | chr3_2:73720094-73720113 | Msa0423740:intron | 40.0% | |
| GTCAAAGCACATTCAATTGG+TGG | - | chr3_2:73720164-73720183 | Msa0423740:intron | 40.0% | |
| !!! | GGCAGGCTTTATTTTGATGA+TGG | - | chr3_2:73720185-73720204 | Msa0423740:intron | 40.0% |
| AATGGTAGAGGAAGAAGAAG+AGG | - | chr3_2:73720436-73720455 | Msa0423740:CDS | 40.0% | |
| GAAGAGGAAGAAGATGAAGA+TGG | - | chr3_2:73720452-73720471 | Msa0423740:CDS | 40.0% | |
| GAAGAAGATGAAGATGGTGA+TGG | - | chr3_2:73720458-73720477 | Msa0423740:CDS | 40.0% | |
| ! | TGATGATGAAGACGATGATG+AGG | - | chr3_2:73720481-73720500 | Msa0423740:CDS | 40.0% |
| ! | GCATAGAAGTATGGATTTCC+TGG | + | chr3_2:73720801-73720820 | None:intergenic | 40.0% |
| ACATTACAGACCCAACGAAT+TGG | - | chr3_2:73720824-73720843 | Msa0423740:CDS | 40.0% | |
| ACAACACATACCGAAAAGAG+AGG | - | chr3_2:73721339-73721358 | Msa0423740:intron | 40.0% | |
| ! | ATGGTCGAGTTTTTGTGCTA+GGG | - | chr3_2:73721382-73721401 | Msa0423740:intron | 40.0% |
| GAAGAAGTTGAGGAACACCT+TGG | + | chr3_2:73719832-73719851 | None:intergenic | 45.0% | |
| CTCTTCCTCTATGATCCCTT+AGG | + | chr3_2:73720136-73720155 | None:intergenic | 45.0% | |
| GGGATCATAGAGGAAGAGAT+TGG | - | chr3_2:73720138-73720157 | Msa0423740:CDS | 45.0% | |
| CGCGTCAAAGCACATTCAAT+TGG | - | chr3_2:73720161-73720180 | Msa0423740:intron | 45.0% | |
| ! | AAGCACATTCAATTGGTGGC+AGG | - | chr3_2:73720168-73720187 | Msa0423740:intron | 45.0% |
| !! | GACAAAGGTAATGGATGAGG+AGG | - | chr3_2:73720325-73720344 | Msa0423740:intron | 45.0% |
| TATGTTGGAGGATGAGGAAG+AGG | - | chr3_2:73720358-73720377 | Msa0423740:intron | 45.0% | |
| ! | GAGGAAGGTGATGATGATGA+TGG | - | chr3_2:73720377-73720396 | Msa0423740:intron | 45.0% |
| !! | GGTGATGATGATGATGGTGA+TGG | - | chr3_2:73720383-73720402 | Msa0423740:intron | 45.0% |
| !! | GATGATGATGATGGTGATGG+TGG | - | chr3_2:73720386-73720405 | Msa0423740:intron | 45.0% |
| CGACGGTTATACAATGGTAG+AGG | - | chr3_2:73720424-73720443 | Msa0423740:intron | 45.0% | |
| TGAAGACGATGATGAGGATG+AGG | - | chr3_2:73720487-73720506 | Msa0423740:CDS | 45.0% | |
| ! | GATTGTGGTTTAGGGAGCAT+TGG | - | chr3_2:73720714-73720733 | Msa0423740:CDS | 45.0% |
| CTTGCAGTGGCAACATACAA+GGG | + | chr3_2:73721150-73721169 | None:intergenic | 45.0% | |
| ! | GATGGTCGAGTTTTTGTGCT+AGG | - | chr3_2:73721381-73721400 | Msa0423740:intron | 45.0% |
| ! | TCGAGTTTTTGTGCTAGGGT+GGG | - | chr3_2:73721386-73721405 | Msa0423740:CDS | 45.0% |
| TTGTGCGAAGTTGTGTTGCA+TGG | - | chr3_2:73721452-73721471 | Msa0423740:CDS | 45.0% | |
| GAAGAAGTTGAGGAACACCT+TGG | + | chr3_2:73719832-73719851 | None:intergenic | 45.0% | |
| CTCTTCCTCTATGATCCCTT+AGG | + | chr3_2:73720136-73720155 | None:intergenic | 45.0% | |
| GGGATCATAGAGGAAGAGAT+TGG | - | chr3_2:73720138-73720157 | Msa0423740:CDS | 45.0% | |
| CGCGTCAAAGCACATTCAAT+TGG | - | chr3_2:73720161-73720180 | Msa0423740:intron | 45.0% | |
| ! | AAGCACATTCAATTGGTGGC+AGG | - | chr3_2:73720168-73720187 | Msa0423740:intron | 45.0% |
| !! | GACAAAGGTAATGGATGAGG+AGG | - | chr3_2:73720325-73720344 | Msa0423740:intron | 45.0% |
| TATGTTGGAGGATGAGGAAG+AGG | - | chr3_2:73720358-73720377 | Msa0423740:intron | 45.0% | |
| ! | GAGGAAGGTGATGATGATGA+TGG | - | chr3_2:73720377-73720396 | Msa0423740:intron | 45.0% |
| !! | GGTGATGATGATGATGGTGA+TGG | - | chr3_2:73720383-73720402 | Msa0423740:intron | 45.0% |
| !! | GATGATGATGATGGTGATGG+TGG | - | chr3_2:73720386-73720405 | Msa0423740:intron | 45.0% |
| CGACGGTTATACAATGGTAG+AGG | - | chr3_2:73720424-73720443 | Msa0423740:intron | 45.0% | |
| TGAAGACGATGATGAGGATG+AGG | - | chr3_2:73720487-73720506 | Msa0423740:CDS | 45.0% | |
| ! | GATTGTGGTTTAGGGAGCAT+TGG | - | chr3_2:73720714-73720733 | Msa0423740:CDS | 45.0% |
| CTTGCAGTGGCAACATACAA+GGG | + | chr3_2:73721150-73721169 | None:intergenic | 45.0% | |
| ! | GATGGTCGAGTTTTTGTGCT+AGG | - | chr3_2:73721381-73721400 | Msa0423740:intron | 45.0% |
| ! | TCGAGTTTTTGTGCTAGGGT+GGG | - | chr3_2:73721386-73721405 | Msa0423740:CDS | 45.0% |
| TTGTGCGAAGTTGTGTTGCA+TGG | - | chr3_2:73721452-73721471 | Msa0423740:CDS | 45.0% | |
| !! | AAAAACTTAATAATAATAAT+CGG | + | chr3_2:73719920-73719939 | None:intergenic | 5.0% |
| !! | AAAAACTTAATAATAATAAT+CGG | + | chr3_2:73719920-73719939 | None:intergenic | 5.0% |
| TTGGAGGATGAGGAAGAGGA+AGG | - | chr3_2:73720362-73720381 | Msa0423740:intron | 50.0% | |
| CGACGACGACGGTTATACAA+TGG | - | chr3_2:73720418-73720437 | Msa0423740:intron | 50.0% | |
| CGATGATGAGGATGAGGATG+AGG | - | chr3_2:73720493-73720512 | Msa0423740:CDS | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | + | chr3_2:73721151-73721170 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | - | chr3_2:73721148-73721167 | Msa0423740:CDS | 50.0% | |
| ! | GTCGAGTTTTTGTGCTAGGG+TGG | - | chr3_2:73721385-73721404 | Msa0423740:CDS | 50.0% |
| TGCGAAGTTGTGTTGCATGG+AGG | - | chr3_2:73721455-73721474 | Msa0423740:CDS | 50.0% | |
| TTGGAGGATGAGGAAGAGGA+AGG | - | chr3_2:73720362-73720381 | Msa0423740:intron | 50.0% | |
| CGACGACGACGGTTATACAA+TGG | - | chr3_2:73720418-73720437 | Msa0423740:intron | 50.0% | |
| CGATGATGAGGATGAGGATG+AGG | - | chr3_2:73720493-73720512 | Msa0423740:CDS | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | + | chr3_2:73721151-73721170 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | - | chr3_2:73721148-73721167 | Msa0423740:CDS | 50.0% | |
| ! | GTCGAGTTTTTGTGCTAGGG+TGG | - | chr3_2:73721385-73721404 | Msa0423740:CDS | 50.0% |
| TGCGAAGTTGTGTTGCATGG+AGG | - | chr3_2:73721455-73721474 | Msa0423740:CDS | 50.0% | |
| GAGGAACACCTTGGCAGTGT+TGG | + | chr3_2:73719823-73719842 | None:intergenic | 55.0% | |
| ! | GGAGATGATGACGACGACGA+CGG | - | chr3_2:73720407-73720426 | Msa0423740:intron | 55.0% |
| GAGGAACACCTTGGCAGTGT+TGG | + | chr3_2:73719823-73719842 | None:intergenic | 55.0% | |
| ! | GGAGATGATGACGACGACGA+CGG | - | chr3_2:73720407-73720426 | Msa0423740:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 73719783 | 73721488 | 73719783 | ID=Msa0423740;Name=Msa0423740 |
| chr3_2 | mRNA | 73719783 | 73721488 | 73719783 | ID=Msa0423740-mRNA-1;Parent=Msa0423740;Name=Msa0423740-mRNA-1;_AED=0.14;_eAED=0.19;_QI=0|0|0|1|1|1|5|0|352 |
| chr3_2 | exon | 73721384 | 73721488 | 73721384 | ID=Msa0423740-mRNA-1:exon:18514;Parent=Msa0423740-mRNA-1 |
| chr3_2 | exon | 73720648 | 73721200 | 73720648 | ID=Msa0423740-mRNA-1:exon:18513;Parent=Msa0423740-mRNA-1 |
| chr3_2 | exon | 73720426 | 73720544 | 73720426 | ID=Msa0423740-mRNA-1:exon:18512;Parent=Msa0423740-mRNA-1 |
| chr3_2 | exon | 73720102 | 73720179 | 73720102 | ID=Msa0423740-mRNA-1:exon:18511;Parent=Msa0423740-mRNA-1 |
| chr3_2 | exon | 73719783 | 73719986 | 73719783 | ID=Msa0423740-mRNA-1:exon:18510;Parent=Msa0423740-mRNA-1 |
| chr3_2 | CDS | 73721384 | 73721488 | 73721384 | ID=Msa0423740-mRNA-1:cds;Parent=Msa0423740-mRNA-1 |
| chr3_2 | CDS | 73720648 | 73721200 | 73720648 | ID=Msa0423740-mRNA-1:cds;Parent=Msa0423740-mRNA-1 |
| chr3_2 | CDS | 73720426 | 73720544 | 73720426 | ID=Msa0423740-mRNA-1:cds;Parent=Msa0423740-mRNA-1 |
| chr3_2 | CDS | 73720102 | 73720179 | 73720102 | ID=Msa0423740-mRNA-1:cds;Parent=Msa0423740-mRNA-1 |
| chr3_2 | CDS | 73719783 | 73719986 | 73719783 | ID=Msa0423740-mRNA-1:cds;Parent=Msa0423740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
