Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808810 | KEH41184.1 | 55.449 | 312 | 86 | 5 | 12 | 276 | 1 | 306 | 1.94e-106 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808810 | A0A072VGK8 | 55.449 | 312 | 86 | 5 | 12 | 276 | 1 | 306 | 9.27e-107 | 323 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0808810 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0423740 | Msa0808810 | 0.845816 | 3.207679e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808810 | MtrunA17_Chr1g0169171 | 53.405 | 279 | 77 | 5 | 45 | 276 | 1 | 273 | 6.44e-92 | 275 |
| Msa0808810 | MtrunA17_Chr3g0125161 | 87.218 | 133 | 14 | 1 | 1 | 130 | 1 | 133 | 5.61e-77 | 231 |
| Msa0808810 | MtrunA17_Chr3g0125151 | 84.946 | 93 | 14 | 0 | 184 | 276 | 4 | 96 | 3.64e-56 | 177 |
| Msa0808810 | MtrunA17_Chr1g0169081 | 60.870 | 115 | 41 | 2 | 166 | 276 | 181 | 295 | 3.05e-45 | 155 |
| Msa0808810 | MtrunA17_Chr1g0169161 | 61.404 | 114 | 41 | 2 | 165 | 276 | 193 | 305 | 8.75e-45 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAGTGTTGGTCATAATT+TGG | 0.253758 | 5_3:-33858098 | None:intergenic |
| CAGAGAAGAAAATTCTTTAG+AGG | 0.300748 | 5_3:+33858507 | Msa0808810:CDS |
| GCATAGAAGTATGGATTTCC+TGG | 0.326303 | 5_3:-33859082 | None:intergenic |
| AGAGAGGAGAAATACGTAAA+TGG | 0.332365 | 5_3:+33859639 | Msa0808810:CDS |
| TTACCTTTGGAATGGATAGA+TGG | 0.348383 | 5_3:-33857554 | None:intergenic |
| ATGAGCTTCACAAAAGCAAT+TGG | 0.382357 | 5_3:-33858364 | None:intergenic |
| TATGTTGGAGGATGAGGAAG+AGG | 0.406388 | 5_3:+33858645 | Msa0808810:CDS |
| TAATAATATGTTGGAGGATG+AGG | 0.419640 | 5_3:+33858639 | Msa0808810:CDS |
| CGCGTCAAAGCACATTCTAT+TGG | 0.421177 | 5_3:+33858448 | Msa0808810:CDS |
| ACATTACAGACCCAACGAAT+TGG | 0.430909 | 5_3:+33859108 | Msa0808810:CDS |
| GTATGTGTTGTGTTGATTTG+TGG | 0.448016 | 5_3:-33859611 | None:intergenic |
| CCTTGCAGTGGCAACATACA+AGG | 0.465539 | 5_3:-33859432 | None:intergenic |
| AAGAACTAAACCAATTCGTT+GGG | 0.487807 | 5_3:-33859118 | None:intergenic |
| AAAGAACTAAACCAATTCGT+TGG | 0.488811 | 5_3:-33859119 | None:intergenic |
| CTCTTCCTCTATGATCCCTT+AGG | 0.492258 | 5_3:-33858420 | None:intergenic |
| TTGTGGCAATATGTGATGAT+AGG | 0.496982 | 5_3:-33859594 | None:intergenic |
| GGAGGAAAATAATAATATGT+TGG | 0.500575 | 5_3:+33858630 | Msa0808810:CDS |
| TCTCATAATGCTTCTCTATG+AGG | 0.504327 | 5_3:-33858149 | None:intergenic |
| GGGATCATAGAGGAAGAGAT+TGG | 0.510517 | 5_3:+33858425 | Msa0808810:CDS |
| AATGGTAGAGGAAGAAGAAG+AGG | 0.518113 | 5_3:+33858720 | Msa0808810:CDS |
| AAGCACATTCTATTGGTGGC+AGG | 0.522720 | 5_3:+33858455 | Msa0808810:CDS |
| GAAATACGTAAATGGAAAGA+TGG | 0.523151 | 5_3:+33859647 | Msa0808810:CDS |
| CGATGATGAGGATGAGGATG+AGG | 0.525411 | 5_3:+33858777 | Msa0808810:CDS |
| AGAGAAGCATTATGAGAGAA+TGG | 0.527328 | 5_3:+33858155 | Msa0808810:CDS |
| GGAAAATAATAATATGTTGG+AGG | 0.527415 | 5_3:+33858633 | Msa0808810:CDS |
| GAAGAGGAAGAAGATGAAGA+TGG | 0.532114 | 5_3:+33858736 | Msa0808810:CDS |
| TTGGAGGATGAGGAAGAGGA+AGG | 0.540476 | 5_3:+33858649 | Msa0808810:CDS |
| TGAAGACGATGATGAGGATG+AGG | 0.541376 | 5_3:+33858771 | Msa0808810:CDS |
| TGAGCTTCACAAAAGCAATT+GGG | 0.545679 | 5_3:-33858363 | None:intergenic |
| GTCAAAGCACATTCTATTGG+TGG | 0.547612 | 5_3:+33858451 | Msa0808810:CDS |
| AAAGACAAAGGTAATGGATG+AGG | 0.553323 | 5_3:+33858609 | Msa0808810:CDS |
| TTTCAATATGTGTGAAAACA+AGG | 0.554136 | 5_3:-33858540 | None:intergenic |
| GACAAAGGTAATGGATGAGG+AGG | 0.556485 | 5_3:+33858612 | Msa0808810:CDS |
| GAGGAACACCTTGGCAGTGT+TGG | 0.557953 | 5_3:-33858109 | None:intergenic |
| AGCTCATGCTTTCGAAACAA+AGG | 0.561664 | 5_3:+33858380 | Msa0808810:CDS |
| GGAAGACTTTGAAGAAGTTG+AGG | 0.564880 | 5_3:-33858128 | None:intergenic |
| GCTCATGCTTTCGAAACAAA+GGG | 0.566004 | 5_3:+33858381 | Msa0808810:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.576526 | 5_3:+33859432 | Msa0808810:CDS |
| GATGATGATGATGGTGATGG+TGG | 0.586203 | 5_3:+33858673 | Msa0808810:CDS |
| TTGTGCGAAGTTGTGTTGCA+TGG | 0.595631 | 5_3:+33859736 | Msa0808810:CDS |
| GAAGAAGTTGAGGAACACCT+TGG | 0.598409 | 5_3:-33858118 | None:intergenic |
| CGACGGTTATACAATGGTAG+AGG | 0.603192 | 5_3:+33858708 | Msa0808810:CDS |
| TGATATGCTTTGTAAAGCAA+AGG | 0.607441 | 5_3:-33859408 | None:intergenic |
| TTTATCCTAAGGGATCATAG+AGG | 0.616153 | 5_3:+33858415 | Msa0808810:CDS |
| ATGCCATCTATCCATTCCAA+AGG | 0.619737 | 5_3:+33857551 | Msa0808810:CDS |
| AATTATGACCAACACTGCCA+AGG | 0.625272 | 5_3:+33858101 | Msa0808810:CDS |
| TGATGATGAAGACGATGATG+AGG | 0.632639 | 5_3:+33858765 | Msa0808810:CDS |
| GAAGAAGATGAAGATGGTGA+TGG | 0.640201 | 5_3:+33858742 | Msa0808810:CDS |
| GAGGAAGGTGATGATGATGA+TGG | 0.640863 | 5_3:+33858664 | Msa0808810:CDS |
| ATAACAATTATACCTTGCAG+TGG | 0.648271 | 5_3:-33859444 | None:intergenic |
| GGTGATGATGATGATGGTGA+TGG | 0.656321 | 5_3:+33858670 | Msa0808810:CDS |
| ACAACACATACCGAAAAGAG+AGG | 0.656927 | 5_3:+33859623 | Msa0808810:CDS |
| CTTGCAGTGGCAACATACAA+GGG | 0.670891 | 5_3:-33859431 | None:intergenic |
| TGACGACGACGGTTATACAA+TGG | 0.701620 | 5_3:+33858702 | Msa0808810:CDS |
| TGCGAAGTTGTGTTGCATGG+AGG | 0.718120 | 5_3:+33859739 | Msa0808810:CDS |
| GGTGGAGATGATGACGACGA+CGG | 0.751131 | 5_3:+33858691 | Msa0808810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAATATTTGAATTTTT+AGG | + | chr5_3:33858037-33858056 | Msa0808810:intron | 10.0% |
| !!! | ATCAGTTTTTTTTTTTTTTT+TGG | - | chr5_3:33858284-33858303 | None:intergenic | 10.0% |
| !!! | AAGAAAATATTTGAATTTTT+AGG | + | chr5_3:33858037-33858056 | Msa0808810:intron | 10.0% |
| !!! | ATCAGTTTTTTTTTTTTTTT+TGG | - | chr5_3:33858284-33858303 | None:intergenic | 10.0% |
| !! | TAACAATTAACTATTAACAT+TGG | - | chr5_3:33857820-33857839 | None:intergenic | 15.0% |
| !! | AATTTCTTTAGCAATTTATT+TGG | + | chr5_3:33857992-33858011 | Msa0808810:intron | 15.0% |
| !!! | TATTTTAAAGAATGTTGTTA+AGG | + | chr5_3:33859378-33859397 | Msa0808810:CDS | 15.0% |
| !! | TTCATAATTGTAACAAAAAA+AGG | - | chr5_3:33859477-33859496 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTACAATTATGA+AGG | + | chr5_3:33859476-33859495 | Msa0808810:intron | 15.0% |
| !!! | TTTTTTGTTACAATTATGAA+GGG | + | chr5_3:33859477-33859496 | Msa0808810:intron | 15.0% |
| !! | TAACAATTAACTATTAACAT+TGG | - | chr5_3:33857820-33857839 | None:intergenic | 15.0% |
| !! | AATTTCTTTAGCAATTTATT+TGG | + | chr5_3:33857992-33858011 | Msa0808810:intron | 15.0% |
| !!! | TATTTTAAAGAATGTTGTTA+AGG | + | chr5_3:33859378-33859397 | Msa0808810:CDS | 15.0% |
| !! | TTCATAATTGTAACAAAAAA+AGG | - | chr5_3:33859477-33859496 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTACAATTATGA+AGG | + | chr5_3:33859476-33859495 | Msa0808810:intron | 15.0% |
| !!! | TTTTTTGTTACAATTATGAA+GGG | + | chr5_3:33859477-33859496 | Msa0808810:intron | 15.0% |
| !! | AAAAGAAAAAAGGTTTAAGT+TGG | - | chr5_3:33857754-33857773 | None:intergenic | 20.0% |
| !! | AACAAGAAGAAAAAGAAAAA+AGG | - | chr5_3:33857764-33857783 | None:intergenic | 20.0% |
| !! | ATTAAGACAATAAAAACTTG+GGG | - | chr5_3:33857922-33857941 | None:intergenic | 20.0% |
| !! | CATTAAGACAATAAAAACTT+GGG | - | chr5_3:33857923-33857942 | None:intergenic | 20.0% |
| !! | AACTTAATAATAATAATCGG+AGG | - | chr5_3:33858206-33858225 | None:intergenic | 20.0% |
| !!! | TATTGCAATATTTTATCCTA+AGG | + | chr5_3:33858404-33858423 | Msa0808810:CDS | 20.0% |
| !!! | ATTGCAATATTTTATCCTAA+GGG | + | chr5_3:33858405-33858424 | Msa0808810:CDS | 20.0% |
| !! | AAAAGAAAAAAGGTTTAAGT+TGG | - | chr5_3:33857754-33857773 | None:intergenic | 20.0% |
| !! | AACAAGAAGAAAAAGAAAAA+AGG | - | chr5_3:33857764-33857783 | None:intergenic | 20.0% |
| !! | ATTAAGACAATAAAAACTTG+GGG | - | chr5_3:33857922-33857941 | None:intergenic | 20.0% |
| !! | CATTAAGACAATAAAAACTT+GGG | - | chr5_3:33857923-33857942 | None:intergenic | 20.0% |
| !! | AACTTAATAATAATAATCGG+AGG | - | chr5_3:33858206-33858225 | None:intergenic | 20.0% |
| !!! | TATTGCAATATTTTATCCTA+AGG | + | chr5_3:33858404-33858423 | Msa0808810:CDS | 20.0% |
| !!! | ATTGCAATATTTTATCCTAA+GGG | + | chr5_3:33858405-33858424 | Msa0808810:CDS | 20.0% |
| ! | TATGACAAAATATGCAACAA+AGG | - | chr5_3:33857596-33857615 | None:intergenic | 25.0% |
| ! | CCATTAAGACAATAAAAACT+TGG | - | chr5_3:33857924-33857943 | None:intergenic | 25.0% |
| !! | CCAAGTTTTTATTGTCTTAA+TGG | + | chr5_3:33857921-33857940 | Msa0808810:intron | 25.0% |
| ! | CTGTCTTATAATTTGAATGT+TGG | + | chr5_3:33858060-33858079 | Msa0808810:intron | 25.0% |
| !! | AAATCAATGTTACTTAAGAG+TGG | - | chr5_3:33858311-33858330 | None:intergenic | 25.0% |
| ! | TTTCAATATGTGTGAAAACA+AGG | - | chr5_3:33858543-33858562 | None:intergenic | 25.0% |
| ! | ATCAATGTGTAAAAAGACAA+AGG | + | chr5_3:33858597-33858616 | Msa0808810:CDS | 25.0% |
| ! | GGAGGAAAATAATAATATGT+TGG | + | chr5_3:33858630-33858649 | Msa0808810:CDS | 25.0% |
| ! | GGAAAATAATAATATGTTGG+AGG | + | chr5_3:33858633-33858652 | Msa0808810:CDS | 25.0% |
| ! | ATTTACCTAATGATTGATTG+TGG | + | chr5_3:33858983-33859002 | Msa0808810:intron | 25.0% |
| ! | TAATGATTGATTGTGGTTTA+GGG | + | chr5_3:33858990-33859009 | Msa0808810:intron | 25.0% |
| !!! | ATTTCATCATCTTCAAGTTT+TGG | - | chr5_3:33859040-33859059 | None:intergenic | 25.0% |
| !! | TAATGTTTTGCATAGAAGTA+TGG | - | chr5_3:33859094-33859113 | None:intergenic | 25.0% |
| ! | GAAGGAAAGAAAAAATGTAA+CGG | - | chr5_3:33859323-33859342 | None:intergenic | 25.0% |
| ! | AATTGTAACAAAAAAAGGCA+AGG | - | chr5_3:33859472-33859491 | None:intergenic | 25.0% |
| !!! | TTCATCTTTTTTGTTATCAC+AGG | + | chr5_3:33859547-33859566 | Msa0808810:intron | 25.0% |
| ! | TATGACAAAATATGCAACAA+AGG | - | chr5_3:33857596-33857615 | None:intergenic | 25.0% |
| ! | CCATTAAGACAATAAAAACT+TGG | - | chr5_3:33857924-33857943 | None:intergenic | 25.0% |
| !! | CCAAGTTTTTATTGTCTTAA+TGG | + | chr5_3:33857921-33857940 | Msa0808810:intron | 25.0% |
| ! | CTGTCTTATAATTTGAATGT+TGG | + | chr5_3:33858060-33858079 | Msa0808810:intron | 25.0% |
| !! | AAATCAATGTTACTTAAGAG+TGG | - | chr5_3:33858311-33858330 | None:intergenic | 25.0% |
| ! | TTTCAATATGTGTGAAAACA+AGG | - | chr5_3:33858543-33858562 | None:intergenic | 25.0% |
| ! | ATCAATGTGTAAAAAGACAA+AGG | + | chr5_3:33858597-33858616 | Msa0808810:CDS | 25.0% |
| ! | GGAGGAAAATAATAATATGT+TGG | + | chr5_3:33858630-33858649 | Msa0808810:CDS | 25.0% |
| ! | GGAAAATAATAATATGTTGG+AGG | + | chr5_3:33858633-33858652 | Msa0808810:CDS | 25.0% |
| ! | ATTTACCTAATGATTGATTG+TGG | + | chr5_3:33858983-33859002 | Msa0808810:intron | 25.0% |
| ! | TAATGATTGATTGTGGTTTA+GGG | + | chr5_3:33858990-33859009 | Msa0808810:intron | 25.0% |
| !!! | ATTTCATCATCTTCAAGTTT+TGG | - | chr5_3:33859040-33859059 | None:intergenic | 25.0% |
| !! | TAATGTTTTGCATAGAAGTA+TGG | - | chr5_3:33859094-33859113 | None:intergenic | 25.0% |
| ! | GAAGGAAAGAAAAAATGTAA+CGG | - | chr5_3:33859323-33859342 | None:intergenic | 25.0% |
| ! | AATTGTAACAAAAAAAGGCA+AGG | - | chr5_3:33859472-33859491 | None:intergenic | 25.0% |
| !!! | TTCATCTTTTTTGTTATCAC+AGG | + | chr5_3:33859547-33859566 | Msa0808810:intron | 25.0% |
| ACAAAATATGCAACAAAGGA+AGG | - | chr5_3:33857592-33857611 | None:intergenic | 30.0% | |
| GTTTCATTCCATTTCATGTA+TGG | - | chr5_3:33857628-33857647 | None:intergenic | 30.0% | |
| !! | ACTGGTTTGAGTAAAATGTT+AGG | - | chr5_3:33857887-33857906 | None:intergenic | 30.0% |
| CAGAGAAGAAAATTCTTTAG+AGG | + | chr5_3:33858507-33858526 | Msa0808810:CDS | 30.0% | |
| GTGTAAAAAGACAAAGGTAA+TGG | + | chr5_3:33858603-33858622 | Msa0808810:CDS | 30.0% | |
| TAATAATATGTTGGAGGATG+AGG | + | chr5_3:33858639-33858658 | Msa0808810:CDS | 30.0% | |
| ATGAAAGCAGAAAAGAAGAA+AGG | + | chr5_3:33858826-33858845 | Msa0808810:intron | 30.0% | |
| CTAAACCACAATCAATCATT+AGG | - | chr5_3:33858991-33859010 | None:intergenic | 30.0% | |
| CTAATGATTGATTGTGGTTT+AGG | + | chr5_3:33858989-33859008 | Msa0808810:intron | 30.0% | |
| AAGAACTAAACCAATTCGTT+GGG | - | chr5_3:33859121-33859140 | None:intergenic | 30.0% | |
| AAAGAACTAAACCAATTCGT+TGG | - | chr5_3:33859122-33859141 | None:intergenic | 30.0% | |
| ! | TAGCTCATTTTCTTAAGCTT+AGG | + | chr5_3:33859239-33859258 | Msa0808810:intron | 30.0% |
| ! | AGCTCATTTTCTTAAGCTTA+GGG | + | chr5_3:33859240-33859259 | Msa0808810:intron | 30.0% |
| TGATATGCTTTGTAAAGCAA+AGG | - | chr5_3:33859411-33859430 | None:intergenic | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | - | chr5_3:33859447-33859466 | None:intergenic | 30.0% | |
| ACAAAAAAGATGAATGCAAC+TGG | - | chr5_3:33859541-33859560 | None:intergenic | 30.0% | |
| GAAATACGTAAATGGAAAGA+TGG | + | chr5_3:33859647-33859666 | Msa0808810:CDS | 30.0% | |
| ACAAAATATGCAACAAAGGA+AGG | - | chr5_3:33857592-33857611 | None:intergenic | 30.0% | |
| GTTTCATTCCATTTCATGTA+TGG | - | chr5_3:33857628-33857647 | None:intergenic | 30.0% | |
| !! | ACTGGTTTGAGTAAAATGTT+AGG | - | chr5_3:33857887-33857906 | None:intergenic | 30.0% |
| CAGAGAAGAAAATTCTTTAG+AGG | + | chr5_3:33858507-33858526 | Msa0808810:CDS | 30.0% | |
| GTGTAAAAAGACAAAGGTAA+TGG | + | chr5_3:33858603-33858622 | Msa0808810:CDS | 30.0% | |
| TAATAATATGTTGGAGGATG+AGG | + | chr5_3:33858639-33858658 | Msa0808810:CDS | 30.0% | |
| ATGAAAGCAGAAAAGAAGAA+AGG | + | chr5_3:33858826-33858845 | Msa0808810:intron | 30.0% | |
| CTAAACCACAATCAATCATT+AGG | - | chr5_3:33858991-33859010 | None:intergenic | 30.0% | |
| CTAATGATTGATTGTGGTTT+AGG | + | chr5_3:33858989-33859008 | Msa0808810:intron | 30.0% | |
| AAGAACTAAACCAATTCGTT+GGG | - | chr5_3:33859121-33859140 | None:intergenic | 30.0% | |
| AAAGAACTAAACCAATTCGT+TGG | - | chr5_3:33859122-33859141 | None:intergenic | 30.0% | |
| ! | TAGCTCATTTTCTTAAGCTT+AGG | + | chr5_3:33859239-33859258 | Msa0808810:intron | 30.0% |
| ! | AGCTCATTTTCTTAAGCTTA+GGG | + | chr5_3:33859240-33859259 | Msa0808810:intron | 30.0% |
| TGATATGCTTTGTAAAGCAA+AGG | - | chr5_3:33859411-33859430 | None:intergenic | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | - | chr5_3:33859447-33859466 | None:intergenic | 30.0% | |
| ACAAAAAAGATGAATGCAAC+TGG | - | chr5_3:33859541-33859560 | None:intergenic | 30.0% | |
| GAAATACGTAAATGGAAAGA+TGG | + | chr5_3:33859647-33859666 | Msa0808810:CDS | 30.0% | |
| !! | TTACCTTTGGAATGGATAGA+TGG | - | chr5_3:33857557-33857576 | None:intergenic | 35.0% |
| !! | GAGTTCTTTTACCTTTGGAA+TGG | - | chr5_3:33857565-33857584 | None:intergenic | 35.0% |
| ATATGCAACAAAGGAAGGAT+GGG | - | chr5_3:33857587-33857606 | None:intergenic | 35.0% | |
| AATATGCAACAAAGGAAGGA+TGG | - | chr5_3:33857588-33857607 | None:intergenic | 35.0% | |
| CATCTCTTCCATACATGAAA+TGG | + | chr5_3:33857617-33857636 | Msa0808810:intron | 35.0% | |
| TACAGAAGTAAAGTAGCCAA+GGG | - | chr5_3:33857678-33857697 | None:intergenic | 35.0% | |
| TTACAGAAGTAAAGTAGCCA+AGG | - | chr5_3:33857679-33857698 | None:intergenic | 35.0% | |
| ! | TTGGCTACTTTACTTCTGTA+AGG | + | chr5_3:33857678-33857697 | Msa0808810:intron | 35.0% |
| TCTCATAATGCTTCTCTATG+AGG | - | chr5_3:33858152-33858171 | None:intergenic | 35.0% | |
| !! | AGAGAAGCATTATGAGAGAA+TGG | + | chr5_3:33858155-33858174 | Msa0808810:CDS | 35.0% |
| TGAGCTTCACAAAAGCAATT+GGG | - | chr5_3:33858366-33858385 | None:intergenic | 35.0% | |
| ATGAGCTTCACAAAAGCAAT+TGG | - | chr5_3:33858367-33858386 | None:intergenic | 35.0% | |
| TTTATCCTAAGGGATCATAG+AGG | + | chr5_3:33858415-33858434 | Msa0808810:CDS | 35.0% | |
| !!! | GGCTTTATTTTGATGATGGT+TGG | + | chr5_3:33858476-33858495 | Msa0808810:CDS | 35.0% |
| !! | AAAGACAAAGGTAATGGATG+AGG | + | chr5_3:33858609-33858628 | Msa0808810:CDS | 35.0% |
| AAAGAAGAAAGGAGTTGACA+AGG | + | chr5_3:33858837-33858856 | Msa0808810:intron | 35.0% | |
| AAGAAGAAAGGAGTTGACAA+GGG | + | chr5_3:33858838-33858857 | Msa0808810:intron | 35.0% | |
| CAAAAACATACATGCTTTGC+AGG | - | chr5_3:33858899-33858918 | None:intergenic | 35.0% | |
| GTTGAAATGTATATTCAGCC+AGG | + | chr5_3:33859064-33859083 | Msa0808810:intron | 35.0% | |
| ! | ATTTTCTTAAGCTTAGGGTG+AGG | + | chr5_3:33859245-33859264 | Msa0808810:intron | 35.0% |
| ! | CGGTTGTAAAAGCTTGTTTA+GGG | - | chr5_3:33859303-33859322 | None:intergenic | 35.0% |
| ! | ACGGTTGTAAAAGCTTGTTT+AGG | - | chr5_3:33859304-33859323 | None:intergenic | 35.0% |
| TTCTTTCCTTCATGTGCTTA+TGG | + | chr5_3:33859332-33859351 | Msa0808810:intron | 35.0% | |
| GTAATACCATAAGCACATGA+AGG | - | chr5_3:33859341-33859360 | None:intergenic | 35.0% | |
| TTGTGGCAATATGTGATGAT+AGG | - | chr5_3:33859597-33859616 | None:intergenic | 35.0% | |
| !! | GTATGTGTTGTGTTGATTTG+TGG | - | chr5_3:33859614-33859633 | None:intergenic | 35.0% |
| ! | ACGTATTTCTCCTCTCTTTT+CGG | - | chr5_3:33859636-33859655 | None:intergenic | 35.0% |
| AGAGAGGAGAAATACGTAAA+TGG | + | chr5_3:33859639-33859658 | Msa0808810:CDS | 35.0% | |
| !! | TTACCTTTGGAATGGATAGA+TGG | - | chr5_3:33857557-33857576 | None:intergenic | 35.0% |
| !! | GAGTTCTTTTACCTTTGGAA+TGG | - | chr5_3:33857565-33857584 | None:intergenic | 35.0% |
| ATATGCAACAAAGGAAGGAT+GGG | - | chr5_3:33857587-33857606 | None:intergenic | 35.0% | |
| AATATGCAACAAAGGAAGGA+TGG | - | chr5_3:33857588-33857607 | None:intergenic | 35.0% | |
| CATCTCTTCCATACATGAAA+TGG | + | chr5_3:33857617-33857636 | Msa0808810:intron | 35.0% | |
| TACAGAAGTAAAGTAGCCAA+GGG | - | chr5_3:33857678-33857697 | None:intergenic | 35.0% | |
| TTACAGAAGTAAAGTAGCCA+AGG | - | chr5_3:33857679-33857698 | None:intergenic | 35.0% | |
| ! | TTGGCTACTTTACTTCTGTA+AGG | + | chr5_3:33857678-33857697 | Msa0808810:intron | 35.0% |
| TCTCATAATGCTTCTCTATG+AGG | - | chr5_3:33858152-33858171 | None:intergenic | 35.0% | |
| !! | AGAGAAGCATTATGAGAGAA+TGG | + | chr5_3:33858155-33858174 | Msa0808810:CDS | 35.0% |
| TGAGCTTCACAAAAGCAATT+GGG | - | chr5_3:33858366-33858385 | None:intergenic | 35.0% | |
| ATGAGCTTCACAAAAGCAAT+TGG | - | chr5_3:33858367-33858386 | None:intergenic | 35.0% | |
| TTTATCCTAAGGGATCATAG+AGG | + | chr5_3:33858415-33858434 | Msa0808810:CDS | 35.0% | |
| !!! | GGCTTTATTTTGATGATGGT+TGG | + | chr5_3:33858476-33858495 | Msa0808810:CDS | 35.0% |
| !! | AAAGACAAAGGTAATGGATG+AGG | + | chr5_3:33858609-33858628 | Msa0808810:CDS | 35.0% |
| AAAGAAGAAAGGAGTTGACA+AGG | + | chr5_3:33858837-33858856 | Msa0808810:intron | 35.0% | |
| AAGAAGAAAGGAGTTGACAA+GGG | + | chr5_3:33858838-33858857 | Msa0808810:intron | 35.0% | |
| CAAAAACATACATGCTTTGC+AGG | - | chr5_3:33858899-33858918 | None:intergenic | 35.0% | |
| GTTGAAATGTATATTCAGCC+AGG | + | chr5_3:33859064-33859083 | Msa0808810:intron | 35.0% | |
| ! | ATTTTCTTAAGCTTAGGGTG+AGG | + | chr5_3:33859245-33859264 | Msa0808810:intron | 35.0% |
| ! | CGGTTGTAAAAGCTTGTTTA+GGG | - | chr5_3:33859303-33859322 | None:intergenic | 35.0% |
| ! | ACGGTTGTAAAAGCTTGTTT+AGG | - | chr5_3:33859304-33859323 | None:intergenic | 35.0% |
| TTCTTTCCTTCATGTGCTTA+TGG | + | chr5_3:33859332-33859351 | Msa0808810:intron | 35.0% | |
| GTAATACCATAAGCACATGA+AGG | - | chr5_3:33859341-33859360 | None:intergenic | 35.0% | |
| TTGTGGCAATATGTGATGAT+AGG | - | chr5_3:33859597-33859616 | None:intergenic | 35.0% | |
| !! | GTATGTGTTGTGTTGATTTG+TGG | - | chr5_3:33859614-33859633 | None:intergenic | 35.0% |
| ! | ACGTATTTCTCCTCTCTTTT+CGG | - | chr5_3:33859636-33859655 | None:intergenic | 35.0% |
| AGAGAGGAGAAATACGTAAA+TGG | + | chr5_3:33859639-33859658 | Msa0808810:CDS | 35.0% | |
| ATGCCATCTATCCATTCCAA+AGG | + | chr5_3:33857551-33857570 | Msa0808810:CDS | 40.0% | |
| ! | GATGGGAGTTCTTTTACCTT+TGG | - | chr5_3:33857570-33857589 | None:intergenic | 40.0% |
| TTGGGGTTAGATAACTCAAC+TGG | - | chr5_3:33857905-33857924 | None:intergenic | 40.0% | |
| !! | TGGCAGTGTTGGTCATAATT+TGG | - | chr5_3:33858101-33858120 | None:intergenic | 40.0% |
| AATTATGACCAACACTGCCA+AGG | + | chr5_3:33858101-33858120 | Msa0808810:CDS | 40.0% | |
| ! | GGAAGACTTTGAAGAAGTTG+AGG | - | chr5_3:33858131-33858150 | None:intergenic | 40.0% |
| AGCTCATGCTTTCGAAACAA+AGG | + | chr5_3:33858380-33858399 | Msa0808810:CDS | 40.0% | |
| GCTCATGCTTTCGAAACAAA+GGG | + | chr5_3:33858381-33858400 | Msa0808810:CDS | 40.0% | |
| GTCAAAGCACATTCTATTGG+TGG | + | chr5_3:33858451-33858470 | Msa0808810:CDS | 40.0% | |
| !!! | GGCAGGCTTTATTTTGATGA+TGG | + | chr5_3:33858472-33858491 | Msa0808810:CDS | 40.0% |
| AATGGTAGAGGAAGAAGAAG+AGG | + | chr5_3:33858720-33858739 | Msa0808810:CDS | 40.0% | |
| GAAGAGGAAGAAGATGAAGA+TGG | + | chr5_3:33858736-33858755 | Msa0808810:CDS | 40.0% | |
| GAAGAAGATGAAGATGGTGA+TGG | + | chr5_3:33858742-33858761 | Msa0808810:CDS | 40.0% | |
| ! | TGATGATGAAGACGATGATG+AGG | + | chr5_3:33858765-33858784 | Msa0808810:CDS | 40.0% |
| ! | GCATAGAAGTATGGATTTCC+TGG | - | chr5_3:33859085-33859104 | None:intergenic | 40.0% |
| ACATTACAGACCCAACGAAT+TGG | + | chr5_3:33859108-33859127 | Msa0808810:CDS | 40.0% | |
| ACAACACATACCGAAAAGAG+AGG | + | chr5_3:33859623-33859642 | Msa0808810:CDS | 40.0% | |
| ! | ATGGTCGAGTTTTTGTGCTA+GGG | + | chr5_3:33859666-33859685 | Msa0808810:CDS | 40.0% |
| ATGCCATCTATCCATTCCAA+AGG | + | chr5_3:33857551-33857570 | Msa0808810:CDS | 40.0% | |
| ! | GATGGGAGTTCTTTTACCTT+TGG | - | chr5_3:33857570-33857589 | None:intergenic | 40.0% |
| TTGGGGTTAGATAACTCAAC+TGG | - | chr5_3:33857905-33857924 | None:intergenic | 40.0% | |
| !! | TGGCAGTGTTGGTCATAATT+TGG | - | chr5_3:33858101-33858120 | None:intergenic | 40.0% |
| AATTATGACCAACACTGCCA+AGG | + | chr5_3:33858101-33858120 | Msa0808810:CDS | 40.0% | |
| ! | GGAAGACTTTGAAGAAGTTG+AGG | - | chr5_3:33858131-33858150 | None:intergenic | 40.0% |
| AGCTCATGCTTTCGAAACAA+AGG | + | chr5_3:33858380-33858399 | Msa0808810:CDS | 40.0% | |
| GCTCATGCTTTCGAAACAAA+GGG | + | chr5_3:33858381-33858400 | Msa0808810:CDS | 40.0% | |
| GTCAAAGCACATTCTATTGG+TGG | + | chr5_3:33858451-33858470 | Msa0808810:CDS | 40.0% | |
| !!! | GGCAGGCTTTATTTTGATGA+TGG | + | chr5_3:33858472-33858491 | Msa0808810:CDS | 40.0% |
| AATGGTAGAGGAAGAAGAAG+AGG | + | chr5_3:33858720-33858739 | Msa0808810:CDS | 40.0% | |
| GAAGAGGAAGAAGATGAAGA+TGG | + | chr5_3:33858736-33858755 | Msa0808810:CDS | 40.0% | |
| GAAGAAGATGAAGATGGTGA+TGG | + | chr5_3:33858742-33858761 | Msa0808810:CDS | 40.0% | |
| ! | TGATGATGAAGACGATGATG+AGG | + | chr5_3:33858765-33858784 | Msa0808810:CDS | 40.0% |
| ! | GCATAGAAGTATGGATTTCC+TGG | - | chr5_3:33859085-33859104 | None:intergenic | 40.0% |
| ACATTACAGACCCAACGAAT+TGG | + | chr5_3:33859108-33859127 | Msa0808810:CDS | 40.0% | |
| ACAACACATACCGAAAAGAG+AGG | + | chr5_3:33859623-33859642 | Msa0808810:CDS | 40.0% | |
| ! | ATGGTCGAGTTTTTGTGCTA+GGG | + | chr5_3:33859666-33859685 | Msa0808810:CDS | 40.0% |
| GAAGAAGTTGAGGAACACCT+TGG | - | chr5_3:33858121-33858140 | None:intergenic | 45.0% | |
| CTCTTCCTCTATGATCCCTT+AGG | - | chr5_3:33858423-33858442 | None:intergenic | 45.0% | |
| GGGATCATAGAGGAAGAGAT+TGG | + | chr5_3:33858425-33858444 | Msa0808810:CDS | 45.0% | |
| CGCGTCAAAGCACATTCTAT+TGG | + | chr5_3:33858448-33858467 | Msa0808810:CDS | 45.0% | |
| ! | AAGCACATTCTATTGGTGGC+AGG | + | chr5_3:33858455-33858474 | Msa0808810:CDS | 45.0% |
| !! | GACAAAGGTAATGGATGAGG+AGG | + | chr5_3:33858612-33858631 | Msa0808810:CDS | 45.0% |
| TATGTTGGAGGATGAGGAAG+AGG | + | chr5_3:33858645-33858664 | Msa0808810:CDS | 45.0% | |
| ! | GAGGAAGGTGATGATGATGA+TGG | + | chr5_3:33858664-33858683 | Msa0808810:CDS | 45.0% |
| !! | GGTGATGATGATGATGGTGA+TGG | + | chr5_3:33858670-33858689 | Msa0808810:CDS | 45.0% |
| !! | GATGATGATGATGGTGATGG+TGG | + | chr5_3:33858673-33858692 | Msa0808810:CDS | 45.0% |
| TGACGACGACGGTTATACAA+TGG | + | chr5_3:33858702-33858721 | Msa0808810:CDS | 45.0% | |
| CGACGGTTATACAATGGTAG+AGG | + | chr5_3:33858708-33858727 | Msa0808810:CDS | 45.0% | |
| TGAAGACGATGATGAGGATG+AGG | + | chr5_3:33858771-33858790 | Msa0808810:CDS | 45.0% | |
| ! | GATTGTGGTTTAGGGAGCAT+TGG | + | chr5_3:33858998-33859017 | Msa0808810:intron | 45.0% |
| CTTGCAGTGGCAACATACAA+GGG | - | chr5_3:33859434-33859453 | None:intergenic | 45.0% | |
| ! | GATGGTCGAGTTTTTGTGCT+AGG | + | chr5_3:33859665-33859684 | Msa0808810:CDS | 45.0% |
| ! | TCGAGTTTTTGTGCTAGGGT+GGG | + | chr5_3:33859670-33859689 | Msa0808810:CDS | 45.0% |
| TTGTGCGAAGTTGTGTTGCA+TGG | + | chr5_3:33859736-33859755 | Msa0808810:CDS | 45.0% | |
| GAAGAAGTTGAGGAACACCT+TGG | - | chr5_3:33858121-33858140 | None:intergenic | 45.0% | |
| CTCTTCCTCTATGATCCCTT+AGG | - | chr5_3:33858423-33858442 | None:intergenic | 45.0% | |
| GGGATCATAGAGGAAGAGAT+TGG | + | chr5_3:33858425-33858444 | Msa0808810:CDS | 45.0% | |
| CGCGTCAAAGCACATTCTAT+TGG | + | chr5_3:33858448-33858467 | Msa0808810:CDS | 45.0% | |
| ! | AAGCACATTCTATTGGTGGC+AGG | + | chr5_3:33858455-33858474 | Msa0808810:CDS | 45.0% |
| !! | GACAAAGGTAATGGATGAGG+AGG | + | chr5_3:33858612-33858631 | Msa0808810:CDS | 45.0% |
| TATGTTGGAGGATGAGGAAG+AGG | + | chr5_3:33858645-33858664 | Msa0808810:CDS | 45.0% | |
| ! | GAGGAAGGTGATGATGATGA+TGG | + | chr5_3:33858664-33858683 | Msa0808810:CDS | 45.0% |
| !! | GGTGATGATGATGATGGTGA+TGG | + | chr5_3:33858670-33858689 | Msa0808810:CDS | 45.0% |
| !! | GATGATGATGATGGTGATGG+TGG | + | chr5_3:33858673-33858692 | Msa0808810:CDS | 45.0% |
| TGACGACGACGGTTATACAA+TGG | + | chr5_3:33858702-33858721 | Msa0808810:CDS | 45.0% | |
| CGACGGTTATACAATGGTAG+AGG | + | chr5_3:33858708-33858727 | Msa0808810:CDS | 45.0% | |
| TGAAGACGATGATGAGGATG+AGG | + | chr5_3:33858771-33858790 | Msa0808810:CDS | 45.0% | |
| ! | GATTGTGGTTTAGGGAGCAT+TGG | + | chr5_3:33858998-33859017 | Msa0808810:intron | 45.0% |
| CTTGCAGTGGCAACATACAA+GGG | - | chr5_3:33859434-33859453 | None:intergenic | 45.0% | |
| ! | GATGGTCGAGTTTTTGTGCT+AGG | + | chr5_3:33859665-33859684 | Msa0808810:CDS | 45.0% |
| ! | TCGAGTTTTTGTGCTAGGGT+GGG | + | chr5_3:33859670-33859689 | Msa0808810:CDS | 45.0% |
| TTGTGCGAAGTTGTGTTGCA+TGG | + | chr5_3:33859736-33859755 | Msa0808810:CDS | 45.0% | |
| !! | AAAAACTTAATAATAATAAT+CGG | - | chr5_3:33858209-33858228 | None:intergenic | 5.0% |
| !! | AAAAACTTAATAATAATAAT+CGG | - | chr5_3:33858209-33858228 | None:intergenic | 5.0% |
| ! | ACCTCTTCTTTTCCTGCCCT+TGG | + | chr5_3:33857659-33857678 | Msa0808810:intron | 50.0% |
| GAAGTAAAGTAGCCAAGGGC+AGG | - | chr5_3:33857674-33857693 | None:intergenic | 50.0% | |
| TTGGAGGATGAGGAAGAGGA+AGG | + | chr5_3:33858649-33858668 | Msa0808810:CDS | 50.0% | |
| CGATGATGAGGATGAGGATG+AGG | + | chr5_3:33858777-33858796 | Msa0808810:CDS | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | - | chr5_3:33859435-33859454 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | + | chr5_3:33859432-33859451 | Msa0808810:CDS | 50.0% | |
| ! | GTCGAGTTTTTGTGCTAGGG+TGG | + | chr5_3:33859669-33859688 | Msa0808810:CDS | 50.0% |
| TGCGAAGTTGTGTTGCATGG+AGG | + | chr5_3:33859739-33859758 | Msa0808810:CDS | 50.0% | |
| ! | ACCTCTTCTTTTCCTGCCCT+TGG | + | chr5_3:33857659-33857678 | Msa0808810:intron | 50.0% |
| GAAGTAAAGTAGCCAAGGGC+AGG | - | chr5_3:33857674-33857693 | None:intergenic | 50.0% | |
| TTGGAGGATGAGGAAGAGGA+AGG | + | chr5_3:33858649-33858668 | Msa0808810:CDS | 50.0% | |
| CGATGATGAGGATGAGGATG+AGG | + | chr5_3:33858777-33858796 | Msa0808810:CDS | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | - | chr5_3:33859435-33859454 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | + | chr5_3:33859432-33859451 | Msa0808810:CDS | 50.0% | |
| ! | GTCGAGTTTTTGTGCTAGGG+TGG | + | chr5_3:33859669-33859688 | Msa0808810:CDS | 50.0% |
| TGCGAAGTTGTGTTGCATGG+AGG | + | chr5_3:33859739-33859758 | Msa0808810:CDS | 50.0% | |
| GCCAAGGGCAGGAAAAGAAG+AGG | - | chr5_3:33857663-33857682 | None:intergenic | 55.0% | |
| GAGGAACACCTTGGCAGTGT+TGG | - | chr5_3:33858112-33858131 | None:intergenic | 55.0% | |
| ! | GGTGGAGATGATGACGACGA+CGG | + | chr5_3:33858691-33858710 | Msa0808810:CDS | 55.0% |
| GCCAAGGGCAGGAAAAGAAG+AGG | - | chr5_3:33857663-33857682 | None:intergenic | 55.0% | |
| GAGGAACACCTTGGCAGTGT+TGG | - | chr5_3:33858112-33858131 | None:intergenic | 55.0% | |
| ! | GGTGGAGATGATGACGACGA+CGG | + | chr5_3:33858691-33858710 | Msa0808810:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 33857551 | 33859772 | 33857551 | ID=Msa0808810;Name=Msa0808810 |
| chr5_3 | mRNA | 33857551 | 33859772 | 33857551 | ID=Msa0808810-mRNA-1;Parent=Msa0808810;Name=Msa0808810-mRNA-1;_AED=0.20;_eAED=0.24;_QI=0|0|0|0.85|0.5|0.42|7|0|293 |
| chr5_3 | exon | 33857551 | 33857572 | 33857551 | ID=Msa0808810-mRNA-1:exon:10842;Parent=Msa0808810-mRNA-1 |
| chr5_3 | exon | 33858094 | 33858176 | 33858094 | ID=Msa0808810-mRNA-1:exon:10843;Parent=Msa0808810-mRNA-1 |
| chr5_3 | exon | 33858358 | 33858567 | 33858358 | ID=Msa0808810-mRNA-1:exon:10844;Parent=Msa0808810-mRNA-1 |
| chr5_3 | exon | 33858577 | 33858813 | 33858577 | ID=Msa0808810-mRNA-1:exon:10845;Parent=Msa0808810-mRNA-1 |
| chr5_3 | exon | 33859082 | 33859129 | 33859082 | ID=Msa0808810-mRNA-1:exon:10846;Parent=Msa0808810-mRNA-1 |
| chr5_3 | exon | 33859376 | 33859453 | 33859376 | ID=Msa0808810-mRNA-1:exon:10847;Parent=Msa0808810-mRNA-1 |
| chr5_3 | exon | 33859569 | 33859772 | 33859569 | ID=Msa0808810-mRNA-1:exon:10848;Parent=Msa0808810-mRNA-1 |
| chr5_3 | CDS | 33857551 | 33857572 | 33857551 | ID=Msa0808810-mRNA-1:cds;Parent=Msa0808810-mRNA-1 |
| chr5_3 | CDS | 33858094 | 33858176 | 33858094 | ID=Msa0808810-mRNA-1:cds;Parent=Msa0808810-mRNA-1 |
| chr5_3 | CDS | 33858358 | 33858567 | 33858358 | ID=Msa0808810-mRNA-1:cds;Parent=Msa0808810-mRNA-1 |
| chr5_3 | CDS | 33858577 | 33858813 | 33858577 | ID=Msa0808810-mRNA-1:cds;Parent=Msa0808810-mRNA-1 |
| chr5_3 | CDS | 33859082 | 33859129 | 33859082 | ID=Msa0808810-mRNA-1:cds;Parent=Msa0808810-mRNA-1 |
| chr5_3 | CDS | 33859376 | 33859453 | 33859376 | ID=Msa0808810-mRNA-1:cds;Parent=Msa0808810-mRNA-1 |
| chr5_3 | CDS | 33859569 | 33859772 | 33859569 | ID=Msa0808810-mRNA-1:cds;Parent=Msa0808810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
