Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425540 | XP_039687615.1 | 84.112 | 214 | 17 | 5 | 1 | 213 | 1 | 198 | 2.82e-105 | 333 |
| Msa0425540 | XP_039687615.1 | 95.076 | 264 | 12 | 1 | 201 | 464 | 278 | 540 | 2.43e-142 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425540 | sp|Q9FJB8|GRF7_ARATH | 37.667 | 300 | 137 | 13 | 126 | 395 | 57 | 336 | 5.32e-30 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425540 | A0A396IW83 | 83.178 | 214 | 18 | 6 | 1 | 213 | 1 | 197 | 8.17e-103 | 327 |
| Msa0425540 | A0A396IW83 | 95.076 | 264 | 12 | 1 | 201 | 464 | 277 | 539 | 1.35e-142 | 428 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0425540 | TF | GRF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0425540 | Msa0472010 | 0.850541 | 1.589008e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425540 | MtrunA17_Chr3g0127641 | 95.076 | 264 | 12 | 1 | 201 | 464 | 277 | 539 | 2.60e-146 | 428 |
| Msa0425540 | MtrunA17_Chr3g0127641 | 83.178 | 214 | 18 | 6 | 1 | 213 | 1 | 197 | 1.57e-106 | 327 |
| Msa0425540 | MtrunA17_Chr1g0152191 | 42.748 | 131 | 48 | 3 | 103 | 208 | 117 | 245 | 1.18e-22 | 101 |
| Msa0425540 | MtrunA17_Chr4g0021261 | 45.161 | 93 | 35 | 1 | 128 | 204 | 25 | 117 | 3.31e-21 | 94.4 |
| Msa0425540 | MtrunA17_Chr5g0409471 | 51.220 | 82 | 33 | 2 | 126 | 201 | 14 | 94 | 9.76e-21 | 92.8 |
| Msa0425540 | MtrunA17_Chr8g0343881 | 39.785 | 93 | 39 | 1 | 129 | 204 | 12 | 104 | 3.88e-18 | 85.5 |
| Msa0425540 | MtrunA17_Chr4g0070591 | 42.553 | 94 | 37 | 2 | 128 | 204 | 9 | 102 | 8.93e-18 | 84.7 |
| Msa0425540 | MtrunA17_Chr2g0300511 | 40.816 | 98 | 37 | 2 | 128 | 204 | 7 | 104 | 1.76e-17 | 83.6 |
| Msa0425540 | MtrunA17_Chr7g0265931 | 37.719 | 114 | 51 | 3 | 109 | 204 | 60 | 171 | 1.77e-15 | 77.8 |
| Msa0425540 | MtrunA17_Chr8g0351521 | 42.353 | 85 | 46 | 2 | 127 | 208 | 53 | 137 | 5.74e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425540 | AT5G53660.1 | 37.667 | 300 | 137 | 13 | 126 | 395 | 57 | 336 | 5.41e-31 | 123 |
| Msa0425540 | AT4G37740.1 | 50.515 | 97 | 31 | 2 | 128 | 208 | 164 | 259 | 4.04e-23 | 102 |
| Msa0425540 | AT3G13960.1 | 45.918 | 98 | 36 | 1 | 124 | 204 | 12 | 109 | 6.17e-22 | 97.8 |
| Msa0425540 | AT2G22840.1 | 50.515 | 97 | 31 | 2 | 128 | 208 | 133 | 228 | 2.94e-20 | 94.0 |
| Msa0425540 | AT4G24150.3 | 29.762 | 336 | 161 | 14 | 102 | 379 | 90 | 408 | 3.10e-18 | 87.0 |
| Msa0425540 | AT4G24150.2 | 29.762 | 336 | 161 | 14 | 102 | 379 | 128 | 446 | 6.50e-18 | 86.3 |
| Msa0425540 | AT2G06200.2 | 38.835 | 103 | 37 | 1 | 128 | 204 | 45 | 147 | 1.49e-16 | 80.5 |
| Msa0425540 | AT2G36400.1 | 44.330 | 97 | 32 | 2 | 129 | 204 | 77 | 172 | 1.58e-16 | 81.6 |
| Msa0425540 | AT2G06200.1 | 39.806 | 103 | 36 | 2 | 128 | 204 | 6 | 108 | 1.80e-16 | 79.3 |
| Msa0425540 | AT3G52910.1 | 42.553 | 94 | 33 | 2 | 129 | 201 | 83 | 176 | 4.03e-15 | 77.4 |
Find 107 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACACAAACTAACCTTTA+AGG | 0.146408 | 3_2:-75917785 | None:intergenic |
| GTGAAAAGGTTGAAAATTTA+AGG | 0.152843 | 3_2:-75917739 | None:intergenic |
| GCTTCCAACACAACCCTTAA+AGG | 0.155280 | 3_2:+75917771 | Msa0425540:CDS |
| CTTTCACAGTACTTGTTATT+AGG | 0.229946 | 3_2:-75918424 | None:intergenic |
| GTCGAATCCATTGGCACTTC+AGG | 0.255897 | 3_2:+75919717 | Msa0425540:CDS |
| TTCCCTTGGTGCTTCTAATT+CGG | 0.262187 | 3_2:+75919140 | Msa0425540:CDS |
| ACAACATACAACATGTCTTT+TGG | 0.266442 | 3_2:+75917663 | Msa0425540:CDS |
| TCCCTTGGTGCTTCTAATTC+GGG | 0.284487 | 3_2:+75919141 | Msa0425540:CDS |
| TTAGAAGCACCAAGGGAAAT+TGG | 0.307978 | 3_2:-75919135 | None:intergenic |
| AACCTCTTGGTTTCTCAGAT+TGG | 0.311180 | 3_2:-75919341 | None:intergenic |
| GCCCTTGATGATGCAACATT+TGG | 0.323926 | 3_2:-75919822 | None:intergenic |
| TATGATTTACAAGTACTTGA+TGG | 0.325776 | 3_2:+75918011 | Msa0425540:CDS |
| TCAATCTGAGGCTATCAAAT+AGG | 0.341073 | 3_2:+75918326 | Msa0425540:CDS |
| GTGGAAATGAATTCAGATAC+TGG | 0.360987 | 3_2:-75919236 | None:intergenic |
| AAACACAAACTAACCTTTAA+GGG | 0.361293 | 3_2:-75917784 | None:intergenic |
| ACTACTAGTGTTATTGTTGT+TGG | 0.363306 | 3_2:-75917493 | None:intergenic |
| GTCCACTAGCTGAAGTTCTA+AGG | 0.379508 | 3_2:+75919622 | Msa0425540:CDS |
| ATGATTAAACTTATTGAGTA+AGG | 0.386331 | 3_2:-75919859 | None:intergenic |
| GCTAATGCTATCATTGATAA+TGG | 0.393717 | 3_2:+75917708 | Msa0425540:CDS |
| ATGGCGGCTTCAATAGGAAT+AGG | 0.401179 | 3_2:+75917940 | Msa0425540:CDS |
| TTCATCACTTGATCTATCAA+TGG | 0.407184 | 3_2:+75919470 | Msa0425540:CDS |
| GGATTCAGTGTTATTATGAT+AGG | 0.409147 | 3_2:-75919214 | None:intergenic |
| GCTGTTGATGCTGAAGGTTA+TGG | 0.416004 | 3_2:+75917636 | Msa0425540:CDS |
| CTTCTGCACCTACCAGCCTC+TGG | 0.433695 | 3_2:-75918361 | None:intergenic |
| GGTGGAATGGCGGCTTCAAT+AGG | 0.433909 | 3_2:+75917934 | Msa0425540:CDS |
| ACCATTGTTGGAGGTGGTGG+TGG | 0.435162 | 3_2:-75919421 | None:intergenic |
| CTCCTTTCACAATTGCTCAA+TGG | 0.446940 | 3_2:+75917968 | Msa0425540:CDS |
| GGATTAAGTAAGAGAGGAAA+GGG | 0.448727 | 3_2:-75919294 | None:intergenic |
| ATTGTTGGAGGTGGTGGTGG+TGG | 0.456677 | 3_2:-75919418 | None:intergenic |
| GGCTCAATCCAGCACAACCT+TGG | 0.462541 | 3_2:+75919580 | Msa0425540:CDS |
| AACTGATGCAGAACCATTGT+TGG | 0.462885 | 3_2:-75919433 | None:intergenic |
| GAAAGAAGATGAGAAGGAAC+AGG | 0.467897 | 3_2:-75918042 | None:intergenic |
| TCATCACTTGATCTATCAAT+GGG | 0.468999 | 3_2:+75919471 | Msa0425540:CDS |
| CTGATGCATAACAACAAACT+TGG | 0.470877 | 3_2:+75919174 | Msa0425540:CDS |
| TCCATTGGCACTTCAGGGAC+AGG | 0.476778 | 3_2:+75919723 | Msa0425540:CDS |
| CTAAAATAGCATTCTCAAGT+TGG | 0.478113 | 3_2:+75919559 | Msa0425540:CDS |
| AATAACACTAGTAGTGTTGT+TGG | 0.478175 | 3_2:+75917501 | Msa0425540:CDS |
| CTAACCTTTAAGGGTTGTGT+TGG | 0.481457 | 3_2:-75917775 | None:intergenic |
| GCTCAATCCAGCACAACCTT+GGG | 0.488726 | 3_2:+75919581 | Msa0425540:CDS |
| AGTTCAGAACTGTTATATAG+TGG | 0.490372 | 3_2:-75919255 | None:intergenic |
| TGATAGATCAAGTGATGAAA+GGG | 0.490826 | 3_2:-75919466 | None:intergenic |
| TCAATGAAACTAAAACCTCT+TGG | 0.493104 | 3_2:-75919354 | None:intergenic |
| TCTGCTGCTGTTGATGCTGA+AGG | 0.494288 | 3_2:+75917630 | Msa0425540:CDS |
| GTCCAAATGTTGCATCATCA+AGG | 0.496502 | 3_2:+75919820 | Msa0425540:CDS |
| TCGAATCCATTGGCACTTCA+GGG | 0.500942 | 3_2:+75919718 | Msa0425540:CDS |
| AGAACCATTGTTGGAGGTGG+TGG | 0.506509 | 3_2:-75919424 | None:intergenic |
| GGCTTGGAGTGGATGCTGAA+TGG | 0.510711 | 3_2:+75919108 | Msa0425540:CDS |
| CTGATGGAAGTAACATTGCT+TGG | 0.510713 | 3_2:-75919645 | None:intergenic |
| GAACCTACCCAAGGTTGTGC+TGG | 0.517275 | 3_2:-75919588 | None:intergenic |
| TGGCGGCTTCAATAGGAATA+GGG | 0.523564 | 3_2:+75917941 | Msa0425540:CDS |
| TCCTGTCCCTGAAGTGCCAA+TGG | 0.523915 | 3_2:-75919724 | None:intergenic |
| TCAGATTGGAGAGTTTGCAT+TGG | 0.524106 | 3_2:-75919327 | None:intergenic |
| GAATTGAATGAAAAGGGGCT+TGG | 0.524945 | 3_2:+75919092 | Msa0425540:intron |
| CACTAGTAGTGTTGTTGGGT+CGG | 0.525074 | 3_2:+75917506 | Msa0425540:CDS |
| GGCGGTCACAGCAGGTGGAA+TGG | 0.530813 | 3_2:+75917921 | Msa0425540:intron |
| GAAGCAGAAATGTTGTGAAA+AGG | 0.532749 | 3_2:-75917753 | None:intergenic |
| GGGATTAAGTAAGAGAGGAA+AGG | 0.533228 | 3_2:-75919295 | None:intergenic |
| GGCCTTAGAACTTCAGCTAG+TGG | 0.534033 | 3_2:-75919624 | None:intergenic |
| TTGATAGATCAAGTGATGAA+AGG | 0.535432 | 3_2:-75919467 | None:intergenic |
| AGAATTTGTTGCATCACTGA+TGG | 0.536310 | 3_2:-75919661 | None:intergenic |
| AATGGAGATCCAATTTCCCT+TGG | 0.538520 | 3_2:+75919126 | Msa0425540:CDS |
| CTCCATTGAGCAATTGTGAA+AGG | 0.540021 | 3_2:-75917970 | None:intergenic |
| GGAATGGTATCATCTCCATC+TGG | 0.544391 | 3_2:+75919744 | Msa0425540:CDS |
| ATTATGATAGGAACTTCCAT+TGG | 0.546307 | 3_2:-75919202 | None:intergenic |
| ACCACCACCACCTCCAACAA+TGG | 0.549376 | 3_2:+75919420 | Msa0425540:CDS |
| ATACATGAAAGAAGATGAGA+AGG | 0.554354 | 3_2:-75918048 | None:intergenic |
| AACAATGGTTCTGCATCAGT+TGG | 0.557664 | 3_2:+75919435 | Msa0425540:CDS |
| TTATTATGCAAAACACCAGA+TGG | 0.559997 | 3_2:-75919759 | None:intergenic |
| AAAGACATGTTGTATGTTGT+GGG | 0.561732 | 3_2:-75917660 | None:intergenic |
| AAAAGACATGTTGTATGTTG+TGG | 0.562174 | 3_2:-75917661 | None:intergenic |
| AACAATACTGATCCAGAGGC+TGG | 0.566845 | 3_2:+75918349 | Msa0425540:CDS |
| TGAGTTTCGCGTTCAAGACA+AGG | 0.567509 | 3_2:+75917455 | Msa0425540:CDS |
| AGTTTGTTGTTATGCATCAG+AGG | 0.569252 | 3_2:-75919171 | None:intergenic |
| ACAAATCGTGTCGAATCCAT+TGG | 0.573702 | 3_2:+75919708 | Msa0425540:CDS |
| TTGGTGCTTCTAATTCGGGA+TGG | 0.574820 | 3_2:+75919145 | Msa0425540:CDS |
| ATAACACTAGTAGTGTTGTT+GGG | 0.575929 | 3_2:+75917502 | Msa0425540:CDS |
| AACAAACTTGGAATGACCAA+TGG | 0.577256 | 3_2:+75919186 | Msa0425540:CDS |
| ATTGAAACTTAAGAAGCAGA+AGG | 0.579812 | 3_2:-75919910 | None:intergenic |
| CATGATTATCAAAGAATGAA+CGG | 0.581245 | 3_2:-75917593 | None:intergenic |
| TGCAGAACCATTGTTGGAGG+TGG | 0.586637 | 3_2:-75919427 | None:intergenic |
| GAGTTTGCATTGGAACAACA+AGG | 0.591725 | 3_2:-75919317 | None:intergenic |
| ATACTGATCCAGAGGCTGGT+AGG | 0.593096 | 3_2:+75918353 | Msa0425540:CDS |
| TGGAAATGAATTCAGATACT+GGG | 0.603286 | 3_2:-75919235 | None:intergenic |
| ACAAGGGGATTAAGTAAGAG+AGG | 0.605379 | 3_2:-75919300 | None:intergenic |
| GTTTGCATTGGAACAACAAG+GGG | 0.608134 | 3_2:-75919315 | None:intergenic |
| TCCCGAATTAGAAGCACCAA+GGG | 0.609726 | 3_2:-75919142 | None:intergenic |
| CCTTGGGTAGGTTCAACACC+TGG | 0.615728 | 3_2:+75919597 | Msa0425540:CDS |
| TGGATGGTGGTTTCAATCTG+AGG | 0.616315 | 3_2:+75918314 | Msa0425540:CDS |
| GGTAGGTGCAGAAGAACAGA+TGG | 0.619651 | 3_2:+75918370 | Msa0425540:CDS |
| TCCAAATGTTGCATCATCAA+GGG | 0.620644 | 3_2:+75919821 | Msa0425540:CDS |
| CTCCAATCTGAGAAACCAAG+AGG | 0.625201 | 3_2:+75919339 | Msa0425540:CDS |
| GAATGAAAAGGGGCTTGGAG+TGG | 0.630089 | 3_2:+75919097 | Msa0425540:intron |
| TGGCACTTCAGGGACAGGAA+TGG | 0.631431 | 3_2:+75919728 | Msa0425540:CDS |
| GGTCACAGCAGGTGGAATGG+CGG | 0.632356 | 3_2:+75917924 | Msa0425540:intron |
| ACTTCAGCTAGTGGACCACC+AGG | 0.635831 | 3_2:-75919615 | None:intergenic |
| TAGGAACAATACTGATCCAG+AGG | 0.641405 | 3_2:+75918345 | Msa0425540:CDS |
| TGATGCAGAACCATTGTTGG+AGG | 0.644016 | 3_2:-75919430 | None:intergenic |
| CATTGAGCAATTGTGAAAGG+AGG | 0.644246 | 3_2:-75917967 | None:intergenic |
| ATCCCGAATTAGAAGCACCA+AGG | 0.660495 | 3_2:-75919143 | None:intergenic |
| AATCCAGCACAACCTTGGGT+AGG | 0.661395 | 3_2:+75919585 | Msa0425540:CDS |
| AGTTTGCATTGGAACAACAA+GGG | 0.661506 | 3_2:-75919316 | None:intergenic |
| CCAGGTGTTGAACCTACCCA+AGG | 0.666817 | 3_2:-75919597 | None:intergenic |
| TCACTTGATCTATCAATGGG+AGG | 0.680795 | 3_2:+75919474 | Msa0425540:CDS |
| TTGGTCTAATGCAGAGACAG+TGG | 0.682367 | 3_2:+75919380 | Msa0425540:CDS |
| TGGGTAGGTTCAACACCTGG+TGG | 0.687244 | 3_2:+75919600 | Msa0425540:CDS |
| GATTATCAAAGAATGAACGG+TGG | 0.727234 | 3_2:-75917590 | None:intergenic |
| AATGCTATCATTGATAATGG+CGG | 0.749635 | 3_2:+75917711 | Msa0425540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAATATGAAATTAATTA+AGG | - | chr3_2:75918098-75918117 | None:intergenic | 10.0% |
| !! | ATATATAGAAAAATAAGTAG+TGG | + | chr3_2:75917825-75917844 | Msa0425540:intron | 15.0% |
| !!! | AAAAAAAATCAAGCTTTATT+TGG | - | chr3_2:75918987-75919006 | None:intergenic | 15.0% |
| !!! | TAAATAAATGCATTGTTTTA+TGG | + | chr3_2:75919027-75919046 | Msa0425540:intron | 15.0% |
| !! | AAAAAGCAGAAAAAGTTAAT+GGG | - | chr3_2:75918146-75918165 | None:intergenic | 20.0% |
| !! | AAAAAAGCAGAAAAAGTTAA+TGG | - | chr3_2:75918147-75918166 | None:intergenic | 20.0% |
| !!! | TTTCATGTTTTGTTTTGATT+TGG | + | chr3_2:75918951-75918970 | Msa0425540:intron | 20.0% |
| !!! | TTTCTAGTTTGTTATTGATT+TGG | + | chr3_2:75919068-75919087 | Msa0425540:intron | 20.0% |
| !! | ATGATTAAACTTATTGAGTA+AGG | - | chr3_2:75919862-75919881 | None:intergenic | 20.0% |
| !!! | TTGTTGTTGGTTTTTTTTGT+AGG | - | chr3_2:75917483-75917502 | None:intergenic | 25.0% |
| ! | CATGATTATCAAAGAATGAA+CGG | - | chr3_2:75917596-75917615 | None:intergenic | 25.0% |
| ! | GTGAAAAGGTTGAAAATTTA+AGG | - | chr3_2:75917742-75917761 | None:intergenic | 25.0% |
| ! | AAACACAAACTAACCTTTAA+GGG | - | chr3_2:75917787-75917806 | None:intergenic | 25.0% |
| ! | TAAACACAAACTAACCTTTA+AGG | - | chr3_2:75917788-75917807 | None:intergenic | 25.0% |
| ! | TATGATTTACAAGTACTTGA+TGG | + | chr3_2:75918011-75918030 | Msa0425540:CDS | 25.0% |
| ! | TACAAACTTTAGACTCAAAA+TGG | - | chr3_2:75918174-75918193 | None:intergenic | 25.0% |
| ! | AAGGTAAATAGAATGAAAAG+TGG | - | chr3_2:75918203-75918222 | None:intergenic | 25.0% |
| ! | ATAGTCATCATCAAATCAAA+AGG | + | chr3_2:75918518-75918537 | Msa0425540:intron | 25.0% |
| ! | TAGTCATCATCAAATCAAAA+GGG | + | chr3_2:75918519-75918538 | Msa0425540:intron | 25.0% |
| !! | TATTTTCTTGTAGTTGGATT+AGG | - | chr3_2:75918601-75918620 | None:intergenic | 25.0% |
| ! | AATCCAACTACAAGAAAATA+TGG | + | chr3_2:75918601-75918620 | Msa0425540:intron | 25.0% |
| ! | TATGCAAAGAAAATGAAGAT+TGG | - | chr3_2:75918672-75918691 | None:intergenic | 25.0% |
| ! | ATATTGAGTTTGACTAAATC+AGG | + | chr3_2:75918780-75918799 | Msa0425540:intron | 25.0% |
| !!! | TGTCTTTGTTTGTTTTGATT+TGG | + | chr3_2:75918913-75918932 | Msa0425540:intron | 25.0% |
| ! | ACAAAACATGAAAGTGAATA+AGG | - | chr3_2:75918944-75918963 | None:intergenic | 25.0% |
| ! | TTTAAGAGTGAATTTCATAG+AGG | - | chr3_2:75919011-75919030 | None:intergenic | 25.0% |
| !!! | GTTTTATGGTGTTAGTATTA+TGG | + | chr3_2:75919041-75919060 | Msa0425540:intron | 25.0% |
| !! | ATTTGGTGAATTGAATGAAA+AGG | + | chr3_2:75919085-75919104 | Msa0425540:intron | 25.0% |
| ! | TTTGGTGAATTGAATGAAAA+GGG | + | chr3_2:75919086-75919105 | Msa0425540:intron | 25.0% |
| ! | ACTACTAGTGTTATTGTTGT+TGG | - | chr3_2:75917496-75917515 | None:intergenic | 30.0% |
| AATAACACTAGTAGTGTTGT+TGG | + | chr3_2:75917501-75917520 | Msa0425540:CDS | 30.0% | |
| ! | ATAACACTAGTAGTGTTGTT+GGG | + | chr3_2:75917502-75917521 | Msa0425540:CDS | 30.0% |
| AAAGACATGTTGTATGTTGT+GGG | - | chr3_2:75917663-75917682 | None:intergenic | 30.0% | |
| AAAAGACATGTTGTATGTTG+TGG | - | chr3_2:75917664-75917683 | None:intergenic | 30.0% | |
| ! | ACAACATACAACATGTCTTT+TGG | + | chr3_2:75917663-75917682 | Msa0425540:CDS | 30.0% |
| ! | CAACATACAACATGTCTTTT+GGG | + | chr3_2:75917664-75917683 | Msa0425540:CDS | 30.0% |
| ! | AACATACAACATGTCTTTTG+GGG | + | chr3_2:75917665-75917684 | Msa0425540:CDS | 30.0% |
| GCTAATGCTATCATTGATAA+TGG | + | chr3_2:75917708-75917727 | Msa0425540:CDS | 30.0% | |
| !! | AATGCTATCATTGATAATGG+CGG | + | chr3_2:75917711-75917730 | Msa0425540:CDS | 30.0% |
| !!! | ACTTGTGTTTTTTGTGTTTG+TGG | + | chr3_2:75917900-75917919 | Msa0425540:intron | 30.0% |
| ATACATGAAAGAAGATGAGA+AGG | - | chr3_2:75918051-75918070 | None:intergenic | 30.0% | |
| TTAAGGAAGAAGAGAGAAAA+GGG | - | chr3_2:75918081-75918100 | None:intergenic | 30.0% | |
| ATTAAGGAAGAAGAGAGAAA+AGG | - | chr3_2:75918082-75918101 | None:intergenic | 30.0% | |
| !! | CACATTGATTCAATGACAAA+AGG | - | chr3_2:75918222-75918241 | None:intergenic | 30.0% |
| TTTGTCATTGAATCAATGTG+TGG | + | chr3_2:75918222-75918241 | Msa0425540:intron | 30.0% | |
| AAAGCAACACATGATGAAAA+AGG | - | chr3_2:75918248-75918267 | None:intergenic | 30.0% | |
| GAAGAACAGATGGTAAAAAA+TGG | + | chr3_2:75918380-75918399 | Msa0425540:CDS | 30.0% | |
| !! | CTTTCACAGTACTTGTTATT+AGG | - | chr3_2:75918427-75918446 | None:intergenic | 30.0% |
| ! | GATCCATATTTTCTTGTAGT+TGG | - | chr3_2:75918607-75918626 | None:intergenic | 30.0% |
| GAAAATGAAGATTGGAGATA+AGG | - | chr3_2:75918664-75918683 | None:intergenic | 30.0% | |
| ATACAGATATAAACTCACCT+TGG | - | chr3_2:75918724-75918743 | None:intergenic | 30.0% | |
| ! | TGATTTTGTTGAATCCCTTA+AGG | + | chr3_2:75918812-75918831 | Msa0425540:intron | 30.0% |
| ACAAAGACATAGTACATGTT+TGG | - | chr3_2:75918902-75918921 | None:intergenic | 30.0% | |
| TTGGTGAATTGAATGAAAAG+GGG | + | chr3_2:75919087-75919106 | Msa0425540:intron | 30.0% | |
| ATTATGATAGGAACTTCCAT+TGG | - | chr3_2:75919205-75919224 | None:intergenic | 30.0% | |
| ! | GGATTCAGTGTTATTATGAT+AGG | - | chr3_2:75919217-75919236 | None:intergenic | 30.0% |
| TGGAAATGAATTCAGATACT+GGG | - | chr3_2:75919238-75919257 | None:intergenic | 30.0% | |
| AGTTCAGAACTGTTATATAG+TGG | - | chr3_2:75919258-75919277 | None:intergenic | 30.0% | |
| TCAATGAAACTAAAACCTCT+TGG | - | chr3_2:75919357-75919376 | None:intergenic | 30.0% | |
| !!! | GTTTTAGTTTCATTGATGCT+TGG | + | chr3_2:75919361-75919380 | Msa0425540:CDS | 30.0% |
| TGATAGATCAAGTGATGAAA+GGG | - | chr3_2:75919469-75919488 | None:intergenic | 30.0% | |
| TTGATAGATCAAGTGATGAA+AGG | - | chr3_2:75919470-75919489 | None:intergenic | 30.0% | |
| TTCATCACTTGATCTATCAA+TGG | + | chr3_2:75919470-75919489 | Msa0425540:CDS | 30.0% | |
| TCATCACTTGATCTATCAAT+GGG | + | chr3_2:75919471-75919490 | Msa0425540:CDS | 30.0% | |
| CTAAAATAGCATTCTCAAGT+TGG | + | chr3_2:75919559-75919578 | Msa0425540:CDS | 30.0% | |
| TTATTATGCAAAACACCAGA+TGG | - | chr3_2:75919762-75919781 | None:intergenic | 30.0% | |
| ATTGAAACTTAAGAAGCAGA+AGG | - | chr3_2:75919913-75919932 | None:intergenic | 30.0% | |
| GATTATCAAAGAATGAACGG+TGG | - | chr3_2:75917593-75917612 | None:intergenic | 35.0% | |
| ! | ACATACAACATGTCTTTTGG+GGG | + | chr3_2:75917666-75917685 | Msa0425540:CDS | 35.0% |
| GAAGCAGAAATGTTGTGAAA+AGG | - | chr3_2:75917756-75917775 | None:intergenic | 35.0% | |
| !!! | TGTGTTTTTTGTGTTTGTGG+CGG | + | chr3_2:75917903-75917922 | Msa0425540:intron | 35.0% |
| !!! | TATCCTTGTTTTTGAAGCAG+TGG | + | chr3_2:75918294-75918313 | Msa0425540:intron | 35.0% |
| ! | TCAATCTGAGGCTATCAAAT+AGG | + | chr3_2:75918326-75918345 | Msa0425540:CDS | 35.0% |
| TGTGAAAGACATATGCATAG+AGG | + | chr3_2:75918439-75918458 | Msa0425540:intron | 35.0% | |
| TTATTTGTGTGAAGTTCCAC+AGG | - | chr3_2:75918484-75918503 | None:intergenic | 35.0% | |
| ! | TTTCTTGTAGTTGGATTAGG+AGG | - | chr3_2:75918598-75918617 | None:intergenic | 35.0% |
| AGATTGGAGATAAGGATGAA+GGG | - | chr3_2:75918656-75918675 | None:intergenic | 35.0% | |
| AAGATTGGAGATAAGGATGA+AGG | - | chr3_2:75918657-75918676 | None:intergenic | 35.0% | |
| TTTGCATAATAGCAGCTTTG+AGG | + | chr3_2:75918684-75918703 | Msa0425540:intron | 35.0% | |
| GGGATTCAACAAAATCACAA+TGG | - | chr3_2:75918809-75918828 | None:intergenic | 35.0% | |
| TTAGAAGATCCAAGCCTTAA+GGG | - | chr3_2:75918829-75918848 | None:intergenic | 35.0% | |
| !! | AGTTTGTTGTTATGCATCAG+AGG | - | chr3_2:75919174-75919193 | None:intergenic | 35.0% |
| CTGATGCATAACAACAAACT+TGG | + | chr3_2:75919174-75919193 | Msa0425540:CDS | 35.0% | |
| AACAAACTTGGAATGACCAA+TGG | + | chr3_2:75919186-75919205 | Msa0425540:CDS | 35.0% | |
| GTGGAAATGAATTCAGATAC+TGG | - | chr3_2:75919239-75919258 | None:intergenic | 35.0% | |
| GGATTAAGTAAGAGAGGAAA+GGG | - | chr3_2:75919297-75919316 | None:intergenic | 35.0% | |
| AGTTTGCATTGGAACAACAA+GGG | - | chr3_2:75919319-75919338 | None:intergenic | 35.0% | |
| !! | AGAATTTGTTGCATCACTGA+TGG | - | chr3_2:75919664-75919683 | None:intergenic | 35.0% |
| ! | GCTTCATTTTCTGATAGTAG+TGG | + | chr3_2:75919789-75919808 | Msa0425540:CDS | 35.0% |
| TCCAAATGTTGCATCATCAA+GGG | + | chr3_2:75919821-75919840 | Msa0425540:CDS | 35.0% | |
| ! | CTAACCTTTAAGGGTTGTGT+TGG | - | chr3_2:75917778-75917797 | None:intergenic | 40.0% |
| CATTGAGCAATTGTGAAAGG+AGG | - | chr3_2:75917970-75917989 | None:intergenic | 40.0% | |
| CTCCTTTCACAATTGCTCAA+TGG | + | chr3_2:75917968-75917987 | Msa0425540:CDS | 40.0% | |
| CTCCATTGAGCAATTGTGAA+AGG | - | chr3_2:75917973-75917992 | None:intergenic | 40.0% | |
| GAAAGAAGATGAGAAGGAAC+AGG | - | chr3_2:75918045-75918064 | None:intergenic | 40.0% | |
| CATCCACTGCTTCAAAAACA+AGG | - | chr3_2:75918300-75918319 | None:intergenic | 40.0% | |
| !!! | CTTGTTTTTGAAGCAGTGGA+TGG | + | chr3_2:75918298-75918317 | Msa0425540:intron | 40.0% |
| TAGGAACAATACTGATCCAG+AGG | + | chr3_2:75918345-75918364 | Msa0425540:CDS | 40.0% | |
| ! | TTCACTGCCTGATTTTACTG+TGG | + | chr3_2:75918567-75918586 | Msa0425540:intron | 40.0% |
| GATTGGAGATAAGGATGAAG+GGG | - | chr3_2:75918655-75918674 | None:intergenic | 40.0% | |
| AGGCTTCAAATAAGCAACCA+AGG | + | chr3_2:75918704-75918723 | Msa0425540:intron | 40.0% | |
| TTGTTGAATCCCTTAAGGCT+TGG | + | chr3_2:75918817-75918836 | Msa0425540:intron | 40.0% | |
| CTTAGAAGATCCAAGCCTTA+AGG | - | chr3_2:75918830-75918849 | None:intergenic | 40.0% | |
| GAATTGAATGAAAAGGGGCT+TGG | + | chr3_2:75919092-75919111 | Msa0425540:intron | 40.0% | |
| AATGGAGATCCAATTTCCCT+TGG | + | chr3_2:75919126-75919145 | Msa0425540:CDS | 40.0% | |
| !! | TTAGAAGCACCAAGGGAAAT+TGG | - | chr3_2:75919138-75919157 | None:intergenic | 40.0% |
| !! | TTCCCTTGGTGCTTCTAATT+CGG | + | chr3_2:75919140-75919159 | Msa0425540:CDS | 40.0% |
| GGGATTAAGTAAGAGAGGAA+AGG | - | chr3_2:75919298-75919317 | None:intergenic | 40.0% | |
| ACAAGGGGATTAAGTAAGAG+AGG | - | chr3_2:75919303-75919322 | None:intergenic | 40.0% | |
| GTTTGCATTGGAACAACAAG+GGG | - | chr3_2:75919318-75919337 | None:intergenic | 40.0% | |
| GAGTTTGCATTGGAACAACA+AGG | - | chr3_2:75919320-75919339 | None:intergenic | 40.0% | |
| TCAGATTGGAGAGTTTGCAT+TGG | - | chr3_2:75919330-75919349 | None:intergenic | 40.0% | |
| AACCTCTTGGTTTCTCAGAT+TGG | - | chr3_2:75919344-75919363 | None:intergenic | 40.0% | |
| AACTGATGCAGAACCATTGT+TGG | - | chr3_2:75919436-75919455 | None:intergenic | 40.0% | |
| ! | AACAATGGTTCTGCATCAGT+TGG | + | chr3_2:75919435-75919454 | Msa0425540:CDS | 40.0% |
| TCACTTGATCTATCAATGGG+AGG | + | chr3_2:75919474-75919493 | Msa0425540:CDS | 40.0% | |
| CTGATGGAAGTAACATTGCT+TGG | - | chr3_2:75919648-75919667 | None:intergenic | 40.0% | |
| ACAAATCGTGTCGAATCCAT+TGG | + | chr3_2:75919708-75919727 | Msa0425540:CDS | 40.0% | |
| GTCCAAATGTTGCATCATCA+AGG | + | chr3_2:75919820-75919839 | Msa0425540:CDS | 40.0% | |
| TGAGTTTCGCGTTCAAGACA+AGG | + | chr3_2:75917455-75917474 | Msa0425540:CDS | 45.0% | |
| ! | CACTAGTAGTGTTGTTGGGT+CGG | + | chr3_2:75917506-75917525 | Msa0425540:CDS | 45.0% |
| GCTGTTGATGCTGAAGGTTA+TGG | + | chr3_2:75917636-75917655 | Msa0425540:CDS | 45.0% | |
| GCTTCCAACACAACCCTTAA+AGG | + | chr3_2:75917771-75917790 | Msa0425540:CDS | 45.0% | |
| ATGGCGGCTTCAATAGGAAT+AGG | + | chr3_2:75917940-75917959 | Msa0425540:CDS | 45.0% | |
| TGGCGGCTTCAATAGGAATA+GGG | + | chr3_2:75917941-75917960 | Msa0425540:CDS | 45.0% | |
| !!! | GTTTTTGAAGCAGTGGATGG+TGG | + | chr3_2:75918301-75918320 | Msa0425540:intron | 45.0% |
| ! | TGGATGGTGGTTTCAATCTG+AGG | + | chr3_2:75918314-75918333 | Msa0425540:CDS | 45.0% |
| AACAATACTGATCCAGAGGC+TGG | + | chr3_2:75918349-75918368 | Msa0425540:CDS | 45.0% | |
| TTCCACAGGCTTTCTTGAAC+GGG | - | chr3_2:75918470-75918489 | None:intergenic | 45.0% | |
| GTTCCACAGGCTTTCTTGAA+CGG | - | chr3_2:75918471-75918490 | None:intergenic | 45.0% | |
| GGAACAGCCACAGTAAAATC+AGG | - | chr3_2:75918577-75918596 | None:intergenic | 45.0% | |
| !! | TCCCTTGGTGCTTCTAATTC+GGG | + | chr3_2:75919141-75919160 | Msa0425540:CDS | 45.0% |
| !! | TCCCGAATTAGAAGCACCAA+GGG | - | chr3_2:75919145-75919164 | None:intergenic | 45.0% |
| !! | ATCCCGAATTAGAAGCACCA+AGG | - | chr3_2:75919146-75919165 | None:intergenic | 45.0% |
| ! | TTGGTGCTTCTAATTCGGGA+TGG | + | chr3_2:75919145-75919164 | Msa0425540:CDS | 45.0% |
| CTCCAATCTGAGAAACCAAG+AGG | + | chr3_2:75919339-75919358 | Msa0425540:CDS | 45.0% | |
| TTGGTCTAATGCAGAGACAG+TGG | + | chr3_2:75919380-75919399 | Msa0425540:CDS | 45.0% | |
| TGATGCAGAACCATTGTTGG+AGG | - | chr3_2:75919433-75919452 | None:intergenic | 45.0% | |
| GTCCACTAGCTGAAGTTCTA+AGG | + | chr3_2:75919622-75919641 | Msa0425540:CDS | 45.0% | |
| TCGAATCCATTGGCACTTCA+GGG | + | chr3_2:75919718-75919737 | Msa0425540:CDS | 45.0% | |
| GGAATGGTATCATCTCCATC+TGG | + | chr3_2:75919744-75919763 | Msa0425540:CDS | 45.0% | |
| !! | GCCCTTGATGATGCAACATT+TGG | - | chr3_2:75919825-75919844 | None:intergenic | 45.0% |
| TCTGCTGCTGTTGATGCTGA+AGG | + | chr3_2:75917630-75917649 | Msa0425540:CDS | 50.0% | |
| ATACTGATCCAGAGGCTGGT+AGG | + | chr3_2:75918353-75918372 | Msa0425540:CDS | 50.0% | |
| GGTAGGTGCAGAAGAACAGA+TGG | + | chr3_2:75918370-75918389 | Msa0425540:CDS | 50.0% | |
| TCCACAGGCTTTCTTGAACG+GGG | - | chr3_2:75918469-75918488 | None:intergenic | 50.0% | |
| GAGATAAGGATGAAGGGGAG+TGG | - | chr3_2:75918650-75918669 | None:intergenic | 50.0% | |
| GAATGAAAAGGGGCTTGGAG+TGG | + | chr3_2:75919097-75919116 | Msa0425540:intron | 50.0% | |
| AGAACCATTGTTGGAGGTGG+TGG | - | chr3_2:75919427-75919446 | None:intergenic | 50.0% | |
| TGCAGAACCATTGTTGGAGG+TGG | - | chr3_2:75919430-75919449 | None:intergenic | 50.0% | |
| GCTCAATCCAGCACAACCTT+GGG | + | chr3_2:75919581-75919600 | Msa0425540:CDS | 50.0% | |
| AATCCAGCACAACCTTGGGT+AGG | + | chr3_2:75919585-75919604 | Msa0425540:CDS | 50.0% | |
| GGCCTTAGAACTTCAGCTAG+TGG | - | chr3_2:75919627-75919646 | None:intergenic | 50.0% | |
| GTCGAATCCATTGGCACTTC+AGG | + | chr3_2:75919717-75919736 | Msa0425540:CDS | 50.0% | |
| !! | GGGTCGGTGCAGAGTTTTGA+AGG | + | chr3_2:75917522-75917541 | Msa0425540:CDS | 55.0% |
| GGGGGTGATTCTTCTGCTCT+AGG | + | chr3_2:75917684-75917703 | Msa0425540:CDS | 55.0% | |
| GGTGGAATGGCGGCTTCAAT+AGG | + | chr3_2:75917934-75917953 | Msa0425540:CDS | 55.0% | |
| TCCCCGTTCAAGAAAGCCTG+TGG | + | chr3_2:75918465-75918484 | Msa0425540:intron | 55.0% | |
| GGCTTGGAGTGGATGCTGAA+TGG | + | chr3_2:75919108-75919127 | Msa0425540:CDS | 55.0% | |
| !! | ATTGTTGGAGGTGGTGGTGG+TGG | - | chr3_2:75919421-75919440 | None:intergenic | 55.0% |
| ACCACCACCACCTCCAACAA+TGG | + | chr3_2:75919420-75919439 | Msa0425540:CDS | 55.0% | |
| ! | ACCATTGTTGGAGGTGGTGG+TGG | - | chr3_2:75919424-75919443 | None:intergenic | 55.0% |
| GGCTCAATCCAGCACAACCT+TGG | + | chr3_2:75919580-75919599 | Msa0425540:CDS | 55.0% | |
| GAACCTACCCAAGGTTGTGC+TGG | - | chr3_2:75919591-75919610 | None:intergenic | 55.0% | |
| !! | CCAGGTGTTGAACCTACCCA+AGG | - | chr3_2:75919600-75919619 | None:intergenic | 55.0% |
| CCTTGGGTAGGTTCAACACC+TGG | + | chr3_2:75919597-75919616 | Msa0425540:CDS | 55.0% | |
| TGGGTAGGTTCAACACCTGG+TGG | + | chr3_2:75919600-75919619 | Msa0425540:CDS | 55.0% | |
| ! | ACTTCAGCTAGTGGACCACC+AGG | - | chr3_2:75919618-75919637 | None:intergenic | 55.0% |
| TCCATTGGCACTTCAGGGAC+AGG | + | chr3_2:75919723-75919742 | Msa0425540:CDS | 55.0% | |
| ! | TCCTGTCCCTGAAGTGCCAA+TGG | - | chr3_2:75919727-75919746 | None:intergenic | 55.0% |
| TGGCACTTCAGGGACAGGAA+TGG | + | chr3_2:75919728-75919747 | Msa0425540:CDS | 55.0% | |
| GTGTTTGTGGCGGTCACAGC+AGG | + | chr3_2:75917913-75917932 | Msa0425540:intron | 60.0% | |
| TTTGTGGCGGTCACAGCAGG+TGG | + | chr3_2:75917916-75917935 | Msa0425540:intron | 60.0% | |
| GGTCACAGCAGGTGGAATGG+CGG | + | chr3_2:75917924-75917943 | Msa0425540:intron | 60.0% | |
| CTTCTGCACCTACCAGCCTC+TGG | - | chr3_2:75918364-75918383 | None:intergenic | 60.0% | |
| GGCGGTCACAGCAGGTGGAA+TGG | + | chr3_2:75917921-75917940 | Msa0425540:intron | 65.0% | |
| !! | GGAGGTGGTGGTGGTGGTGT+TGG | - | chr3_2:75919415-75919434 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 75917450 | 75919952 | 75917450 | ID=Msa0425540;Name=Msa0425540 |
| chr3_2 | mRNA | 75917450 | 75919952 | 75917450 | ID=Msa0425540-mRNA-1;Parent=Msa0425540;Name=Msa0425540-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0.25|1|1|1|4|53|464 |
| chr3_2 | exon | 75917450 | 75917792 | 75917450 | ID=Msa0425540-mRNA-1:exon:19528;Parent=Msa0425540-mRNA-1 |
| chr3_2 | exon | 75917932 | 75918066 | 75917932 | ID=Msa0425540-mRNA-1:exon:19529;Parent=Msa0425540-mRNA-1 |
| chr3_2 | exon | 75918311 | 75918434 | 75918311 | ID=Msa0425540-mRNA-1:exon:19530;Parent=Msa0425540-mRNA-1 |
| chr3_2 | exon | 75919107 | 75919952 | 75919107 | ID=Msa0425540-mRNA-1:exon:19531;Parent=Msa0425540-mRNA-1 |
| chr3_2 | CDS | 75917450 | 75917792 | 75917450 | ID=Msa0425540-mRNA-1:cds;Parent=Msa0425540-mRNA-1 |
| chr3_2 | CDS | 75917932 | 75918066 | 75917932 | ID=Msa0425540-mRNA-1:cds;Parent=Msa0425540-mRNA-1 |
| chr3_2 | CDS | 75918311 | 75918434 | 75918311 | ID=Msa0425540-mRNA-1:cds;Parent=Msa0425540-mRNA-1 |
| chr3_2 | CDS | 75919107 | 75919899 | 75919107 | ID=Msa0425540-mRNA-1:cds;Parent=Msa0425540-mRNA-1 |
| chr3_2 | three_prime_UTR | 75919900 | 75919952 | 75919900 | ID=Msa0425540-mRNA-1:three_prime_utr;Parent=Msa0425540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
