AlfalfaGEDB | Msa0425620

M. sativa cultivar zhongmu-4 / Msa0425620

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0181790	Msa0425620	0.823095	1.665402e-53	-8.615850e-47
Msa0376960	Msa0425620	0.808743	2.666148e-50	-8.615850e-47
Msa0425620	Msa1373060	0.808859	2.517617e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 36 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGGGTGCAGAATATTGT+TGG	0.468164	3_2:-75986514	None:intergenic
AATATTATCACTTGAAGAAT+AGG	0.400683	3_2:-75986066	None:intergenic
AATGACTTCAATTTGGAGAG+AGG	0.591876	3_2:-75986156	None:intergenic
ACATTAATAGCCCCACGGTG+GGG	0.640090	3_2:+75986577	Msa0425620:exon
ACCAGGGAATGAACCATAAG+AGG	0.435500	3_2:-75986531	None:intergenic
ACCATGTTTGAAATTGGATT+GGG	0.461990	3_2:-75986235	None:intergenic
ACTACTCATGTCATCTATCA+TGG	0.395752	3_2:+75986203	Msa0425620:CDS
AGCAACAAATGACTTCAATT+TGG	0.266219	3_2:-75986163	None:intergenic
AGTTTAGTCACAGAGCAGCT+GGG	0.596374	3_2:-75986614	None:intergenic
ATATATACCATGTTTGAAAT+TGG	0.194861	3_2:-75986241	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATCACTTGAAGAATAGGT+AGG	-	chr3_2:75986065-75986084	None:intergenic	30.0%
GATGTAGTTATTTGCAAGTT+TGG	-	chr3_2:75986098-75986117	None:intergenic	30.0%
AGCAACAAATGACTTCAATT+TGG	-	chr3_2:75986166-75986185	None:intergenic	30.0%
CCAAATTCCAATTGGTTAAA+TGG	-	chr3_2:75986368-75986387	None:intergenic	30.0%
CCATTTAACCAATTGGAATT+TGG	+	chr3_2:75986365-75986384	Msa0425620:intron	30.0%
AATCAATCCCAAATTCCAAT+TGG	-	chr3_2:75986376-75986395	None:intergenic	30.0%
TTATCACTTGAAGAATAGGT+AGG	-	chr3_2:75986065-75986084	None:intergenic	30.0%
GATGTAGTTATTTGCAAGTT+TGG	-	chr3_2:75986098-75986117	None:intergenic	30.0%
AGCAACAAATGACTTCAATT+TGG	-	chr3_2:75986166-75986185	None:intergenic	30.0%
CCAAATTCCAATTGGTTAAA+TGG	-	chr3_2:75986368-75986387	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	75986037	75986837	75986037	ID=Msa0425620;Name=Msa0425620
chr3_2	mRNA	75986037	75986837	75986037	ID=Msa0425620-mRNA-1;Parent=Msa0425620;Name=Msa0425620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=113\|1\|1\|1\|1\|1\|2\|254\|62
chr3_2	exon	75986037	75986255	75986037	ID=Msa0425620-mRNA-1:exon:19522;Parent=Msa0425620-mRNA-1
chr3_2	exon	75986501	75986837	75986501	ID=Msa0425620-mRNA-1:exon:19523;Parent=Msa0425620-mRNA-1
chr3_2	five_prime_UTR	75986037	75986149	75986037	ID=Msa0425620-mRNA-1:five_prime_utr;Parent=Msa0425620-mRNA-1
chr3_2	CDS	75986150	75986255	75986150	ID=Msa0425620-mRNA-1:cds;Parent=Msa0425620-mRNA-1
chr3_2	CDS	75986501	75986583	75986501	ID=Msa0425620-mRNA-1:cds;Parent=Msa0425620-mRNA-1
chr3_2	three_prime_UTR	75986584	75986837	75986584	ID=Msa0425620-mRNA-1:three_prime_utr;Parent=Msa0425620-mRNA-1

Gene Sequence	>Msa0425620 ATGACTCCTCTCTCCAAATTGAAGTCATTTGTTGCTCTCTTGGCAATACTTTTACTACTCATGTCATCTATCATGGGTATTGCTGCCCAATCCAATTTCAAACATGGGCGAAAACTTTTCCAACAATATTCTGCACCCTCTTATGGTTCATTCCCTGGTGGTGGAGGATATAAATATCCTCCACATTAA
Protein sequence	>Msa0425620 MTPLSKLKSFVALLAILLLLMSSIMGIAAQSNFKHGRKLFQQYSAPSYGSFPGGGGYKYPPH*