Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425660 | XP_003602357.2 | 97.340 | 376 | 7 | 1 | 1 | 373 | 1 | 376 | 0.0 | 761 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425660 | sp|Q9S7N9|CID12_ARATH | 70.357 | 280 | 78 | 3 | 93 | 371 | 57 | 332 | 8.79e-142 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425660 | G7J8B0 | 97.340 | 376 | 7 | 1 | 1 | 373 | 1 | 376 | 0.0 | 761 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0425660 | Msa0516790 | 0.964318 | 3.547595e-123 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425660 | MtrunA17_Chr3g0127761 | 97.340 | 376 | 7 | 1 | 1 | 373 | 1 | 376 | 0.0 | 761 |
| Msa0425660 | MtrunA17_Chr3g0127771 | 76.826 | 397 | 53 | 11 | 1 | 373 | 1 | 382 | 0.0 | 580 |
| Msa0425660 | MtrunA17_Chr2g0312971 | 63.534 | 266 | 95 | 1 | 102 | 367 | 28 | 291 | 1.05e-118 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0425660 | AT4G10610.1 | 70.357 | 280 | 78 | 3 | 93 | 371 | 57 | 332 | 8.93e-143 | 409 |
| Msa0425660 | AT1G32790.1 | 70.833 | 288 | 78 | 3 | 90 | 373 | 71 | 356 | 9.85e-143 | 409 |
| Msa0425660 | AT3G49390.2 | 58.082 | 365 | 132 | 7 | 1 | 365 | 1 | 344 | 1.97e-140 | 403 |
| Msa0425660 | AT3G49390.2 | 46.465 | 99 | 47 | 4 | 181 | 278 | 258 | 351 | 4.61e-14 | 73.2 |
| Msa0425660 | AT3G49390.3 | 58.082 | 365 | 132 | 7 | 1 | 365 | 1 | 344 | 1.97e-140 | 403 |
| Msa0425660 | AT3G49390.3 | 46.465 | 99 | 47 | 4 | 181 | 278 | 258 | 351 | 4.61e-14 | 73.2 |
| Msa0425660 | AT3G49390.1 | 58.082 | 365 | 132 | 7 | 1 | 365 | 1 | 344 | 1.97e-140 | 403 |
| Msa0425660 | AT3G49390.1 | 46.465 | 99 | 47 | 4 | 181 | 278 | 258 | 351 | 4.61e-14 | 73.2 |
| Msa0425660 | AT1G32790.2 | 69.963 | 273 | 77 | 2 | 90 | 358 | 71 | 342 | 9.31e-134 | 388 |
| Msa0425660 | AT1G32790.2 | 40.000 | 90 | 50 | 2 | 286 | 372 | 173 | 261 | 6.24e-12 | 67.0 |
| Msa0425660 | AT4G10610.2 | 69.811 | 265 | 75 | 3 | 93 | 356 | 57 | 317 | 2.82e-133 | 384 |
| Msa0425660 | AT1G53650.2 | 60.806 | 273 | 91 | 3 | 101 | 373 | 49 | 305 | 9.28e-117 | 342 |
| Msa0425660 | AT3G14450.1 | 54.194 | 310 | 121 | 4 | 70 | 367 | 19 | 319 | 1.67e-115 | 339 |
| Msa0425660 | AT5G24440.1 | 49.731 | 372 | 129 | 8 | 1 | 369 | 1 | 317 | 1.90e-110 | 326 |
| Msa0425660 | AT1G53650.1 | 59.498 | 279 | 91 | 4 | 101 | 373 | 49 | 311 | 2.31e-110 | 325 |
Find 129 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGACTTGATGAACCGATTT+TGG | 0.114098 | 3_2:-76060960 | None:intergenic |
| AAGCTGCAGTGGTGTGATTT+TGG | 0.171226 | 3_2:+76064441 | Msa0425660:CDS |
| CGGTTCATCAAGTCAGAATT+TGG | 0.175529 | 3_2:+76060967 | Msa0425660:CDS |
| TGAAGCTGTAATTACCATTT+TGG | 0.185564 | 3_2:-76061096 | None:intergenic |
| TGTTCAGAACCAGCAGTTTA+TGG | 0.209925 | 3_2:+76061144 | Msa0425660:CDS |
| ACAACCCAAGGACATCAAAT+TGG | 0.224436 | 3_2:+76060483 | Msa0425660:five_prime_UTR |
| TTAAGAAGTATAAAATTGTT+AGG | 0.257529 | 3_2:-76061358 | None:intergenic |
| TGAAATCCAGCGAACCTTAT+AGG | 0.263840 | 3_2:-76064472 | None:intergenic |
| GTAGTCATGAACTGTTTATT+TGG | 0.279035 | 3_2:+76064930 | Msa0425660:three_prime_UTR |
| ACTAAACGCCACAGGTTCTT+TGG | 0.289502 | 3_2:-76064701 | None:intergenic |
| GACAGGTGCAATGGCAGTTT+TGG | 0.297685 | 3_2:-76062356 | None:intergenic |
| TACCTCAAGAGAAGTGATTA+TGG | 0.298628 | 3_2:+76060916 | Msa0425660:exon |
| GTCCATCGACTGAGGCTTCT+TGG | 0.311133 | 3_2:+76062934 | Msa0425660:CDS |
| CGTTTAGCTTGTAGAGTTGA+TGG | 0.312684 | 3_2:+76064788 | Msa0425660:three_prime_UTR |
| TTTGTTTCCCATTGCGGTAA+TGG | 0.315893 | 3_2:+76064759 | Msa0425660:three_prime_UTR |
| TTAGCTGCTGGACCTGCTGC+TGG | 0.319582 | 3_2:+76061325 | Msa0425660:CDS |
| TTGTTTCCCATTGCGGTAAT+GGG | 0.324018 | 3_2:+76064760 | Msa0425660:three_prime_UTR |
| AAAAGTCAGTTCAGCGAAAT+CGG | 0.324233 | 3_2:+76060529 | Msa0425660:five_prime_UTR |
| TCCATACCCTACGGTTAGTT+TGG | 0.330085 | 3_2:-76061402 | None:intergenic |
| GGCAAATCGGAGAATAGAAT+TGG | 0.332888 | 3_2:-76062151 | None:intergenic |
| AACATCCAACCATAAAATTC+TGG | 0.333607 | 3_2:-76064869 | None:intergenic |
| AGCGAATCATAAAGTGGATA+TGG | 0.334771 | 3_2:+76061553 | Msa0425660:CDS |
| CAGCTTCAAGACTCATCAAT+TGG | 0.336559 | 3_2:+76061111 | Msa0425660:CDS |
| TTGTTCTCTGTCTTGCACTA+TGG | 0.337113 | 3_2:+76064732 | Msa0425660:three_prime_UTR |
| GCTGGACCTGCTGCTGGGTT+TGG | 0.337646 | 3_2:+76061331 | Msa0425660:CDS |
| TCCATCGACTGAGGCTTCTT+GGG | 0.338255 | 3_2:+76062935 | Msa0425660:CDS |
| TTCATTGAGTTTACAGATGA+AGG | 0.345676 | 3_2:+76062174 | Msa0425660:CDS |
| TAAGCGTGAAATGAGGGATT+TGG | 0.349931 | 3_2:+76061228 | Msa0425660:CDS |
| TTCAACCATCAACACCAAAA+TGG | 0.363787 | 3_2:+76061082 | Msa0425660:CDS |
| CGTCCCAATTTGATGTCCTT+GGG | 0.376502 | 3_2:-76060487 | None:intergenic |
| AGAAAAGAGAAGAGATGATT+AGG | 0.382555 | 3_2:+76061576 | Msa0425660:CDS |
| AGGACAGTTGATTCAGTTCA+TGG | 0.388261 | 3_2:-76064621 | None:intergenic |
| GGCTGTAGGTTGTTGATTGT+CGG | 0.389761 | 3_2:+76062115 | Msa0425660:intron |
| GAATCAACTGTCCTTGCTGC+TGG | 0.399371 | 3_2:+76064630 | Msa0425660:three_prime_UTR |
| ACGTCCCAATTTGATGTCCT+TGG | 0.409430 | 3_2:-76060488 | None:intergenic |
| AAGTCTGTCTGGAACTATGC+TGG | 0.410248 | 3_2:+76062306 | Msa0425660:CDS |
| CAAATTGGGACGTTCTTCTC+AGG | 0.425979 | 3_2:+76060498 | Msa0425660:five_prime_UTR |
| AAACAGTTCATGACTACAAA+AGG | 0.429797 | 3_2:-76064924 | None:intergenic |
| TGCTTCTCACCTTGCTATGC+CGG | 0.432154 | 3_2:+76065021 | Msa0425660:three_prime_UTR |
| AATCAACTGTCCTTGCTGCT+GGG | 0.435554 | 3_2:+76064631 | Msa0425660:three_prime_UTR |
| ATACTTGAATGGGGTAGTTA+TGG | 0.436188 | 3_2:+76060376 | None:intergenic |
| AAGAATGGCTACACTACTAA+TGG | 0.438109 | 3_2:+76061521 | Msa0425660:CDS |
| ATCGAAACCGAGGACCGATC+AGG | 0.441198 | 3_2:+76061039 | Msa0425660:CDS |
| TAAGAAGTATAAAATTGTTA+GGG | 0.444999 | 3_2:-76061357 | None:intergenic |
| TATTGTGAAGAGAAATGAAA+AGG | 0.445580 | 3_2:-76060568 | None:intergenic |
| AGGGCTGCTGTAAGTCTGTC+TGG | 0.447364 | 3_2:+76062295 | Msa0425660:CDS |
| TTCACATCCTGATCGGTCCT+CGG | 0.451129 | 3_2:-76061046 | None:intergenic |
| CGTGTCTGATATTGATCAGC+TGG | 0.452007 | 3_2:+76061610 | Msa0425660:CDS |
| CAATAACATGTTCATTTGGC+TGG | 0.453807 | 3_2:+76065056 | Msa0425660:three_prime_UTR |
| GTTATTGCAGTCGCAATAAC+CGG | 0.455061 | 3_2:-76065040 | None:intergenic |
| GAAAATGTTGGTGCCAAAAT+CGG | 0.469626 | 3_2:+76060947 | Msa0425660:CDS |
| TAGCTGCTGGACCTGCTGCT+GGG | 0.473262 | 3_2:+76061326 | Msa0425660:CDS |
| ACTGCAATAACATGTTCATT+TGG | 0.476366 | 3_2:+76065052 | Msa0425660:three_prime_UTR |
| TTGGAAGGCAGCACTCTCAA+TGG | 0.478989 | 3_2:-76062337 | None:intergenic |
| TAAACTCAATGAAGGCAAAT+CGG | 0.481637 | 3_2:-76062164 | None:intergenic |
| CAACCCAAGGACATCAAATT+GGG | 0.481848 | 3_2:+76060484 | Msa0425660:five_prime_UTR |
| AATCTGATATTAGAGAATAA+AGG | 0.482329 | 3_2:+76060882 | Msa0425660:five_prime_UTR |
| CTAGGTTACCGAAGAGCAGC+TGG | 0.486453 | 3_2:+76061738 | Msa0425660:intron |
| GGTATGAGAAATGGTGAGAA+TGG | 0.491432 | 3_2:+76061193 | Msa0425660:CDS |
| TTCATCTGTAAACTCAATGA+AGG | 0.492617 | 3_2:-76062172 | None:intergenic |
| TGGAAGGCAGCACTCTCAAT+GGG | 0.493363 | 3_2:-76062336 | None:intergenic |
| CAGTTTATGGTGAACAATGA+TGG | 0.493578 | 3_2:+76061157 | Msa0425660:CDS |
| GCTGTAGGTTGTTGATTGTC+GGG | 0.497702 | 3_2:+76062116 | Msa0425660:intron |
| GAAATGAAAAGGGTGTTGTT+CGG | 0.503257 | 3_2:-76060557 | None:intergenic |
| GAGAGATGCCAGCTGCTCTT+CGG | 0.503624 | 3_2:-76061746 | None:intergenic |
| GAAGAACCCATTACCGCAAT+GGG | 0.504665 | 3_2:-76064766 | None:intergenic |
| GAAGCAGCATCTACTTCATA+TGG | 0.505199 | 3_2:-76065004 | None:intergenic |
| GTGATGAATGGTATGAGAAA+TGG | 0.508297 | 3_2:+76061184 | Msa0425660:CDS |
| AGCTTCAAGACTCATCAATT+GGG | 0.508726 | 3_2:+76061112 | Msa0425660:CDS |
| GCATCTCTCTTTCTTAATTG+CGG | 0.509572 | 3_2:+76061760 | Msa0425660:CDS |
| AATAATTATGCTAATGCTAA+CGG | 0.512676 | 3_2:+76061379 | Msa0425660:CDS |
| ATTGTGAAGAGAAATGAAAA+GGG | 0.512927 | 3_2:-76060567 | None:intergenic |
| GTTTCAGTCTGAAGATGAAA+GGG | 0.512987 | 3_2:+76062510 | Msa0425660:intron |
| GCAGTCAAACCCCAGCAGCA+AGG | 0.514919 | 3_2:-76064641 | None:intergenic |
| TGTTTCAGTCTGAAGATGAA+AGG | 0.515245 | 3_2:+76062509 | Msa0425660:intron |
| GCAAATCGGAGAATAGAATT+GGG | 0.516838 | 3_2:-76062150 | None:intergenic |
| AAAGAGAAGAGATGATTAGG+AGG | 0.524216 | 3_2:+76061579 | Msa0425660:CDS |
| AATCATGGCTACTTAGCTGC+TGG | 0.525224 | 3_2:+76061313 | Msa0425660:CDS |
| GGTATCTTTGTTTCCCATTG+CGG | 0.527623 | 3_2:+76064753 | Msa0425660:three_prime_UTR |
| GCACGGACTGGTGTCTTTGA+CGG | 0.529105 | 3_2:-76064579 | None:intergenic |
| CATTGTTCACCATAAACTGC+TGG | 0.530549 | 3_2:-76061153 | None:intergenic |
| GTAGAGTTGATGGTACTTCG+AGG | 0.532448 | 3_2:+76064798 | Msa0425660:three_prime_UTR |
| AGTCTGTCTGGAACTATGCT+GGG | 0.535887 | 3_2:+76062307 | Msa0425660:CDS |
| GGGTAACCAAACCCAGCAGC+AGG | 0.537106 | 3_2:-76061337 | None:intergenic |
| AGGCACAAATTCCTCAGCCA+TGG | 0.537373 | 3_2:-76061275 | None:intergenic |
| CTGCACAAACATTGACAAGA+AGG | 0.541546 | 3_2:+76062555 | Msa0425660:CDS |
| CCATCGACTGAGGCTTCTTG+GGG | 0.542498 | 3_2:+76062936 | Msa0425660:CDS |
| TTATACATGCAGAGAGTGCA+AGG | 0.544731 | 3_2:+76062275 | Msa0425660:intron |
| ATGCAATCCGAGTTGAATGC+TGG | 0.545014 | 3_2:-76062963 | None:intergenic |
| ATCAACTGTCCTTGCTGCTG+GGG | 0.545550 | 3_2:+76064632 | Msa0425660:three_prime_UTR |
| CCCCAAGAAGCCTCAGTCGA+TGG | 0.545706 | 3_2:-76062936 | None:intergenic |
| GGAGAAGAACGAGCACGGAC+TGG | 0.546895 | 3_2:-76064591 | None:intergenic |
| GCGAAGAGCGAATCATAAAG+TGG | 0.552369 | 3_2:+76061547 | Msa0425660:CDS |
| CCGTCGCTAACAAATAATCA+TGG | 0.562558 | 3_2:+76061298 | Msa0425660:CDS |
| TCTCTTTCTTAATTGCGGCC+AGG | 0.567558 | 3_2:+76061765 | Msa0425660:CDS |
| CTTTGAATCTATCTGTGGAG+AGG | 0.569385 | 3_2:+76062730 | Msa0425660:CDS |
| CGAAGAACCCATTACCGCAA+TGG | 0.569551 | 3_2:-76064767 | None:intergenic |
| AATGATGGATATGTGATGAA+TGG | 0.569689 | 3_2:+76061172 | Msa0425660:CDS |
| TGATTATTTGTTAGCGACGG+AGG | 0.572810 | 3_2:-76061295 | None:intergenic |
| CACTTCTTTGAATCTATCTG+TGG | 0.573834 | 3_2:+76062725 | Msa0425660:CDS |
| GGCACAAATTCCTCAGCCAT+GGG | 0.576547 | 3_2:-76061274 | None:intergenic |
| ATGGCTGTTGCTGAAAATGT+TGG | 0.578892 | 3_2:+76060935 | Msa0425660:CDS |
| TGTCGGATTGACAGGTGCAA+TGG | 0.579326 | 3_2:-76062365 | None:intergenic |
| AGCCATAATCACTTCTCTTG+AGG | 0.582137 | 3_2:-76060918 | None:intergenic |
| TCGCAATAACCGGCATAGCA+AGG | 0.583350 | 3_2:-76065030 | None:intergenic |
| CCATGATTATTTGTTAGCGA+CGG | 0.584715 | 3_2:-76061298 | None:intergenic |
| GTTGTTGATTGTCGGGTATG+CGG | 0.593806 | 3_2:+76062123 | Msa0425660:CDS |
| TAGTCACATTTCACAACCCA+AGG | 0.594675 | 3_2:+76060471 | Msa0425660:five_prime_UTR |
| AAAGCTGAATCCCATGGCTG+AGG | 0.595003 | 3_2:+76061264 | Msa0425660:CDS |
| GGGATTACCAGCATTCAACT+CGG | 0.596095 | 3_2:+76062956 | Msa0425660:CDS |
| ATCATCTGACTCAACTGAGG+TGG | 0.609851 | 3_2:+76061012 | Msa0425660:CDS |
| TTGGGACGTTCTTCTCAGGA+AGG | 0.612224 | 3_2:+76060502 | Msa0425660:five_prime_UTR |
| AAGTATCAACTAAACGCCAC+AGG | 0.617637 | 3_2:-76064709 | None:intergenic |
| ATTGCAGCTCTAAGCTGCAG+TGG | 0.625007 | 3_2:+76064430 | Msa0425660:CDS |
| TACGAGGAGAAGAACGAGCA+CGG | 0.626781 | 3_2:-76064596 | None:intergenic |
| CTAACGGCCAAACTAACCGT+AGG | 0.628743 | 3_2:+76061395 | Msa0425660:CDS |
| GTCTGTCTGGAACTATGCTG+GGG | 0.640656 | 3_2:+76062308 | Msa0425660:CDS |
| TGCATTTGTTGAGTTCGCAG+TGG | 0.641475 | 3_2:+76062981 | Msa0425660:CDS |
| ATGAGAAATGGTGAGAATGG+AGG | 0.651521 | 3_2:+76061196 | Msa0425660:CDS |
| TAACGGCCAAACTAACCGTA+GGG | 0.656336 | 3_2:+76061396 | Msa0425660:CDS |
| AAGGATGACATACTTGAATG+GGG | 0.677380 | 3_2:+76060367 | None:intergenic |
| TTATCTAGGTCCATCGACTG+AGG | 0.678332 | 3_2:+76062926 | Msa0425660:intron |
| TATATGTTCCAAAGAACCTG+TGG | 0.697100 | 3_2:+76064693 | Msa0425660:three_prime_UTR |
| GTTGTCAAAGCTGAATCCCA+TGG | 0.699172 | 3_2:+76061258 | Msa0425660:CDS |
| CGTATCATCTGACTCAACTG+AGG | 0.701261 | 3_2:+76061009 | Msa0425660:CDS |
| AGGTGGAGAAATCGAAACCG+AGG | 0.703142 | 3_2:+76061029 | Msa0425660:CDS |
| TATACATGCAGAGAGTGCAA+GGG | 0.713835 | 3_2:+76062276 | Msa0425660:intron |
| GATTCAGTTCATGGACTACG+AGG | 0.724532 | 3_2:-76064612 | None:intergenic |
| TTGAGTCAGATGATACGACG+TGG | 0.773827 | 3_2:-76061003 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATATATTAAAAATAT+TGG | - | chr3_2:76060423-76060442 | None:intergenic | 0.0% |
| !!! | TTATTTATTTATTTTTTCTG+GGG | + | chr3_2:76060650-76060669 | Msa0425660:intron | 10.0% |
| !!! | TAAAATATTTTTCATTGTTT+TGG | + | chr3_2:76062899-76062918 | Msa0425660:intron | 10.0% |
| !! | ATGGAAATTAAATGAAAAAT+TGG | + | chr3_2:76060395-76060414 | Msa0425660:five_prime_UTR | 15.0% |
| !! | TGGAAATTAAATGAAAAATT+GGG | + | chr3_2:76060396-76060415 | Msa0425660:five_prime_UTR | 15.0% |
| !!! | TAAGAAGTATAAAATTGTTA+GGG | - | chr3_2:76061360-76061379 | None:intergenic | 15.0% |
| !!! | TTAAGAAGTATAAAATTGTT+AGG | - | chr3_2:76061361-76061380 | None:intergenic | 15.0% |
| !! | ACTAATTTAATCATATACAA+AGG | + | chr3_2:76061916-76061935 | Msa0425660:intron | 15.0% |
| !! | TGTTTATATAATCTATTCTA+AGG | - | chr3_2:76063532-76063551 | None:intergenic | 15.0% |
| !! | ATTTAGTAAACTTACTTTAA+TGG | + | chr3_2:76063865-76063884 | Msa0425660:intron | 15.0% |
| !!! | ATATTTTAGCATTTTACTAA+GGG | - | chr3_2:76064272-76064291 | None:intergenic | 15.0% |
| !!! | TATATTTTAGCATTTTACTA+AGG | - | chr3_2:76064273-76064292 | None:intergenic | 15.0% |
| !!! | AAACAAACATGAAGATTTTA+AGG | - | chr3_2:76060698-76060717 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTATGATGTTTTG+TGG | + | chr3_2:76060797-76060816 | Msa0425660:intron | 20.0% |
| !!! | TTTTTCTTATGATGTTTTGT+GGG | + | chr3_2:76060798-76060817 | Msa0425660:intron | 20.0% |
| !!! | CAAAAAATTGTTATTAAACC+AGG | - | chr3_2:76060845-76060864 | None:intergenic | 20.0% |
| !!! | ATTTTTTGATACAGATTTGA+AGG | + | chr3_2:76060857-76060876 | Msa0425660:intron | 20.0% |
| !!! | TTTTTTGATACAGATTTGAA+GGG | + | chr3_2:76060858-76060877 | Msa0425660:intron | 20.0% |
| !! | AATCTGATATTAGAGAATAA+AGG | + | chr3_2:76060882-76060901 | Msa0425660:five_prime_UTR | 20.0% |
| !! | AATAATTATGCTAATGCTAA+CGG | + | chr3_2:76061379-76061398 | Msa0425660:CDS | 20.0% |
| !!! | TAATGATTGTTGTTTTATGT+CGG | + | chr3_2:76061712-76061731 | Msa0425660:intron | 20.0% |
| !!! | ATTGTCATTTGTACTATTTA+GGG | + | chr3_2:76062038-76062057 | Msa0425660:intron | 20.0% |
| !! | AAAAATAGGATGTAGTTATA+GGG | - | chr3_2:76063171-76063190 | None:intergenic | 20.0% |
| !! | TAAAAATAGGATGTAGTTAT+AGG | - | chr3_2:76063172-76063191 | None:intergenic | 20.0% |
| !! | TTATTGACAGAAGTAAAAAT+AGG | - | chr3_2:76063185-76063204 | None:intergenic | 20.0% |
| !!! | TCCTTGTTTATTTATGAATT+TGG | + | chr3_2:76063353-76063372 | Msa0425660:intron | 20.0% |
| !! | TCCAAATTCATAAATAAACA+AGG | - | chr3_2:76063357-76063376 | None:intergenic | 20.0% |
| !! | GTTTATTTATGAATTTGGAA+TGG | + | chr3_2:76063358-76063377 | Msa0425660:intron | 20.0% |
| !! | TAGTGAAGTTATTAATTCTA+AGG | + | chr3_2:76063715-76063734 | Msa0425660:intron | 20.0% |
| !!! | TGGTTTTGTTCTTAATTAAT+TGG | + | chr3_2:76064227-76064246 | Msa0425660:intron | 20.0% |
| !!! | TATTTTAGCATTTTACTAAG+GGG | - | chr3_2:76064271-76064290 | None:intergenic | 20.0% |
| !! | TGCTAAAATATATGAAGTAT+TGG | + | chr3_2:76064281-76064300 | Msa0425660:intron | 20.0% |
| ! | ATTGTGAAGAGAAATGAAAA+GGG | - | chr3_2:76060570-76060589 | None:intergenic | 25.0% |
| ! | TATTGTGAAGAGAAATGAAA+AGG | - | chr3_2:76060571-76060590 | None:intergenic | 25.0% |
| !!! | TTATTTTTTCTGGGGTTTTA+AGG | + | chr3_2:76060658-76060677 | Msa0425660:intron | 25.0% |
| ! | TTTGTTTGATCTTATGTCAT+TGG | + | chr3_2:76060711-76060730 | Msa0425660:intron | 25.0% |
| !!! | TGTTTTTTTTGTTTACTTCC+TGG | + | chr3_2:76060824-76060843 | Msa0425660:intron | 25.0% |
| ! | AAAAAAACATCATAGCGTAT+CGG | - | chr3_2:76061797-76061816 | None:intergenic | 25.0% |
| ! | ACGCATAATTTACTATTGTT+TGG | - | chr3_2:76061943-76061962 | None:intergenic | 25.0% |
| ! | AACAATAGTAAATTATGCGT+CGG | + | chr3_2:76061943-76061962 | Msa0425660:intron | 25.0% |
| !!! | CAAATCATTTTAGTATTGCT+TGG | - | chr3_2:76061996-76062015 | None:intergenic | 25.0% |
| !! | GCAATACTAAAATGATTTGT+CGG | + | chr3_2:76061997-76062016 | Msa0425660:intron | 25.0% |
| ! | TAGTACAAATGACAATGTAA+CGG | - | chr3_2:76062034-76062053 | None:intergenic | 25.0% |
| !! | CATTGTCATTTGTACTATTT+AGG | + | chr3_2:76062037-76062056 | Msa0425660:intron | 25.0% |
| ! | GCATATGAACAACAAATATT+TGG | - | chr3_2:76062211-76062230 | None:intergenic | 25.0% |
| ! | AGGTAAATTATTATTCACTC+TGG | - | chr3_2:76062452-76062471 | None:intergenic | 25.0% |
| ! | CACTTTCATTTAATCTTACT+TGG | + | chr3_2:76062594-76062613 | Msa0425660:intron | 25.0% |
| ! | TTTCATTTAATCTTACTTGG+AGG | + | chr3_2:76062597-76062616 | Msa0425660:intron | 25.0% |
| !!! | TAGTAGTTTTTAATGGATCT+TGG | + | chr3_2:76062754-76062773 | Msa0425660:intron | 25.0% |
| ! | CATGGAATATATCGATATAA+TGG | - | chr3_2:76062830-76062849 | None:intergenic | 25.0% |
| ! | CATTATATCGATATATTCCA+TGG | + | chr3_2:76062828-76062847 | Msa0425660:intron | 25.0% |
| !!! | ATTGTTTTGGTGTATTATCT+AGG | + | chr3_2:76062912-76062931 | Msa0425660:intron | 25.0% |
| ! | TTGAGCAAATAAAAGTAAGA+AGG | - | chr3_2:76063029-76063048 | None:intergenic | 25.0% |
| ! | ATAACTTCACAAAGCAATAT+AGG | - | chr3_2:76063082-76063101 | None:intergenic | 25.0% |
| !!! | TTTTCTCTTGATTGTTTTTC+AGG | - | chr3_2:76063252-76063271 | None:intergenic | 25.0% |
| !! | ATTTATTATGTTAGCTCTTG+TGG | + | chr3_2:76063277-76063296 | Msa0425660:intron | 25.0% |
| !! | TTTATTATGTTAGCTCTTGT+GGG | + | chr3_2:76063278-76063297 | Msa0425660:intron | 25.0% |
| !! | TATTTTCAAAAGCTCTTTCA+CGG | - | chr3_2:76063462-76063481 | None:intergenic | 25.0% |
| !! | ATTTGCTGAAATTAGCTTAT+GGG | - | chr3_2:76063498-76063517 | None:intergenic | 25.0% |
| !!! | AATTTGCTGAAATTAGCTTA+TGG | - | chr3_2:76063499-76063518 | None:intergenic | 25.0% |
| ! | TACAATTGAAGAGTTGAATA+AGG | - | chr3_2:76063591-76063610 | None:intergenic | 25.0% |
| ! | AACTTCACTAATTCAAACTA+AGG | - | chr3_2:76063705-76063724 | None:intergenic | 25.0% |
| !!! | ATGTTTTGTTTGTTTAAGAG+AGG | - | chr3_2:76063847-76063866 | None:intergenic | 25.0% |
| !! | AAGAGAGAATTTGAAATTGA+CGG | - | chr3_2:76064050-76064069 | None:intergenic | 25.0% |
| !!! | TTTTTAGTTATCTTTGCAGT+TGG | + | chr3_2:76064207-76064226 | Msa0425660:intron | 25.0% |
| !!! | ATTTTAGCATTTTACTAAGG+GGG | - | chr3_2:76064270-76064289 | None:intergenic | 25.0% |
| !!! | AATTACCATTTTGGTGTTGA+TGG | - | chr3_2:76061090-76061109 | None:intergenic | 30.0% |
| ! | TGAAGCTGTAATTACCATTT+TGG | - | chr3_2:76061099-76061118 | None:intergenic | 30.0% |
| !! | AATGATGGATATGTGATGAA+TGG | + | chr3_2:76061172-76061191 | Msa0425660:CDS | 30.0% |
| AACAAAATATCCATACCCTA+CGG | - | chr3_2:76061414-76061433 | None:intergenic | 30.0% | |
| ! | CTCTTTCATTATTTTCGTGT+TGG | + | chr3_2:76061439-76061458 | Msa0425660:intron | 30.0% |
| !! | TACAATGATGTGTTTTTCAG+AGG | + | chr3_2:76061498-76061517 | Msa0425660:intron | 30.0% |
| AGAAAAGAGAAGAGATGATT+AGG | + | chr3_2:76061576-76061595 | Msa0425660:CDS | 30.0% | |
| CAGATCATATAGATTCATCA+TGG | - | chr3_2:76061872-76061891 | None:intergenic | 30.0% | |
| ATATGATCTGATATCATCGA+AGG | + | chr3_2:76061882-76061901 | Msa0425660:intron | 30.0% | |
| GGTAAACCATCATTAAGAAA+GGG | - | chr3_2:76062068-76062087 | None:intergenic | 30.0% | |
| TGGTAAACCATCATTAAGAA+AGG | - | chr3_2:76062069-76062088 | None:intergenic | 30.0% | |
| TAAACTCAATGAAGGCAAAT+CGG | - | chr3_2:76062167-76062186 | None:intergenic | 30.0% | |
| TTCATCTGTAAACTCAATGA+AGG | - | chr3_2:76062175-76062194 | None:intergenic | 30.0% | |
| TTCATTGAGTTTACAGATGA+AGG | + | chr3_2:76062174-76062193 | Msa0425660:CDS | 30.0% | |
| ! | GAACAACAAATATTTGGTGA+TGG | - | chr3_2:76062205-76062224 | None:intergenic | 30.0% |
| ACAAACGAAAGAAAGAAAAG+AGG | - | chr3_2:76062472-76062491 | None:intergenic | 30.0% | |
| ! | ATTGACAAGAAGGTAGTTTT+GGG | + | chr3_2:76062565-76062584 | Msa0425660:intron | 30.0% |
| TGATTGCTACAAATCAGATA+CGG | - | chr3_2:76062640-76062659 | None:intergenic | 30.0% | |
| ! | TATCTGATTTGTAGCAATCA+AGG | + | chr3_2:76062640-76062659 | Msa0425660:intron | 30.0% |
| ! | GAGAGGTTAGTAGTTTTTAA+TGG | + | chr3_2:76062747-76062766 | Msa0425660:intron | 30.0% |
| GCAAATAAAAGTAAGAAGGT+TGG | - | chr3_2:76063025-76063044 | None:intergenic | 30.0% | |
| !! | TACTTTTATTTGCTCAACTC+TGG | + | chr3_2:76063032-76063051 | Msa0425660:intron | 30.0% |
| ACAAATGATAACTACAAACC+CGG | - | chr3_2:76063126-76063145 | None:intergenic | 30.0% | |
| !!! | TGTTTTTCAGGACTTTTAGT+AGG | - | chr3_2:76063240-76063259 | None:intergenic | 30.0% |
| GCAGTGAAAATATGTTGTAA+TGG | + | chr3_2:76063401-76063420 | Msa0425660:intron | 30.0% | |
| GTGAAAATATGTTGTAATGG+TGG | + | chr3_2:76063404-76063423 | Msa0425660:intron | 30.0% | |
| TGAGCTTACAAATTTCAACT+TGG | + | chr3_2:76063754-76063773 | Msa0425660:intron | 30.0% | |
| !! | TTTTGTTTGTTTAAGAGAGG+AGG | - | chr3_2:76063844-76063863 | None:intergenic | 30.0% |
| !! | TGTTGCTTGCATATTCTTTT+GGG | + | chr3_2:76063935-76063954 | Msa0425660:intron | 30.0% |
| !! | GGATGGAAATTAAAAGCATT+GGG | - | chr3_2:76063973-76063992 | None:intergenic | 30.0% |
| ! | TTGCCATGTCTTTTCTTTTT+TGG | + | chr3_2:76064361-76064380 | Msa0425660:intron | 30.0% |
| AACATCCAACCATAAAATTC+TGG | - | chr3_2:76064872-76064891 | None:intergenic | 30.0% | |
| ! | TTTTATGGTTGGATGTTATC+TGG | + | chr3_2:76064875-76064894 | Msa0425660:three_prime_UTR | 30.0% |
| AAACAGTTCATGACTACAAA+AGG | - | chr3_2:76064927-76064946 | None:intergenic | 30.0% | |
| GTAGTCATGAACTGTTTATT+TGG | + | chr3_2:76064930-76064949 | Msa0425660:three_prime_UTR | 30.0% | |
| ACTGCAATAACATGTTCATT+TGG | + | chr3_2:76065052-76065071 | Msa0425660:three_prime_UTR | 30.0% | |
| !! | ATTTCGCTGAACTGACTTTT+TGG | - | chr3_2:76060529-76060548 | None:intergenic | 35.0% |
| AAAAGTCAGTTCAGCGAAAT+CGG | + | chr3_2:76060529-76060548 | Msa0425660:five_prime_UTR | 35.0% | |
| !! | GAAATGAAAAGGGTGTTGTT+CGG | - | chr3_2:76060560-76060579 | None:intergenic | 35.0% |
| TACCTCAAGAGAAGTGATTA+TGG | + | chr3_2:76060916-76060935 | Msa0425660:exon | 35.0% | |
| !! | GAAAATGTTGGTGCCAAAAT+CGG | + | chr3_2:76060947-76060966 | Msa0425660:CDS | 35.0% |
| ! | GTTTTTGTTCACATCCTGAT+CGG | - | chr3_2:76061056-76061075 | None:intergenic | 35.0% |
| GATCAGGATGTGAACAAAAA+CGG | + | chr3_2:76061055-76061074 | Msa0425660:CDS | 35.0% | |
| TTCAACCATCAACACCAAAA+TGG | + | chr3_2:76061082-76061101 | Msa0425660:CDS | 35.0% | |
| AGCTTCAAGACTCATCAATT+GGG | + | chr3_2:76061112-76061131 | Msa0425660:CDS | 35.0% | |
| CAGTTTATGGTGAACAATGA+TGG | + | chr3_2:76061157-76061176 | Msa0425660:CDS | 35.0% | |
| GTGATGAATGGTATGAGAAA+TGG | + | chr3_2:76061184-76061203 | Msa0425660:CDS | 35.0% | |
| !!! | AGAGTTTTAAGCGTGAAATG+AGG | + | chr3_2:76061221-76061240 | Msa0425660:CDS | 35.0% |
| !!! | GAGTTTTAAGCGTGAAATGA+GGG | + | chr3_2:76061222-76061241 | Msa0425660:CDS | 35.0% |
| ! | CCATGATTATTTGTTAGCGA+CGG | - | chr3_2:76061301-76061320 | None:intergenic | 35.0% |
| !! | TGTGTTTTTCAGAGGAAGAA+TGG | + | chr3_2:76061506-76061525 | Msa0425660:intron | 35.0% |
| AAGAATGGCTACACTACTAA+TGG | + | chr3_2:76061521-76061540 | Msa0425660:CDS | 35.0% | |
| AGCGAATCATAAAGTGGATA+TGG | + | chr3_2:76061553-76061572 | Msa0425660:CDS | 35.0% | |
| AAAGAGAAGAGATGATTAGG+AGG | + | chr3_2:76061579-76061598 | Msa0425660:CDS | 35.0% | |
| !! | GTTGTTTTATGTCGGAATCT+AGG | + | chr3_2:76061720-76061739 | Msa0425660:intron | 35.0% |
| GCATCTCTCTTTCTTAATTG+CGG | + | chr3_2:76061760-76061779 | Msa0425660:CDS | 35.0% | |
| ! | GGTTTTCCCTTTCTTAATGA+TGG | + | chr3_2:76062059-76062078 | Msa0425660:intron | 35.0% |
| GCAAATCGGAGAATAGAATT+GGG | - | chr3_2:76062153-76062172 | None:intergenic | 35.0% | |
| ATTACCCTGGGTAAAAATGT+CGG | - | chr3_2:76062385-76062404 | None:intergenic | 35.0% | |
| !! | ACTAAGAAAAGCATTACCCT+GGG | - | chr3_2:76062397-76062416 | None:intergenic | 35.0% |
| !! | AACTAAGAAAAGCATTACCC+TGG | - | chr3_2:76062398-76062417 | None:intergenic | 35.0% |
| TGTTTCAGTCTGAAGATGAA+AGG | + | chr3_2:76062509-76062528 | Msa0425660:intron | 35.0% | |
| GTTTCAGTCTGAAGATGAAA+GGG | + | chr3_2:76062510-76062529 | Msa0425660:intron | 35.0% | |
| ! | CATTGACAAGAAGGTAGTTT+TGG | + | chr3_2:76062564-76062583 | Msa0425660:intron | 35.0% |
| CACTTCTTTGAATCTATCTG+TGG | + | chr3_2:76062725-76062744 | Msa0425660:CDS | 35.0% | |
| TGGCTTACAATGCTTATTGT+TGG | + | chr3_2:76062774-76062793 | Msa0425660:intron | 35.0% | |
| !! | AAACTCAAGCATTGAAACCA+TGG | - | chr3_2:76062848-76062867 | None:intergenic | 35.0% |
| ATAGGATGTAGTTATAGGGA+GGG | - | chr3_2:76063167-76063186 | None:intergenic | 35.0% | |
| AATAGGATGTAGTTATAGGG+AGG | - | chr3_2:76063168-76063187 | None:intergenic | 35.0% | |
| !! | TTTTCAGGACTTTTAGTAGG+CGG | - | chr3_2:76063237-76063256 | None:intergenic | 35.0% |
| CATGAAAAGCTAAGATGGAA+AGG | - | chr3_2:76063314-76063333 | None:intergenic | 35.0% | |
| !! | CTTTCCATCTTAGCTTTTCA+TGG | + | chr3_2:76063312-76063331 | Msa0425660:intron | 35.0% |
| TTTGCCATGAAAAGCTAAGA+TGG | - | chr3_2:76063319-76063338 | None:intergenic | 35.0% | |
| AGTTATTAGTCAGCTATGCT+TGG | + | chr3_2:76063675-76063694 | Msa0425660:intron | 35.0% | |
| !!! | GTGTTGCTTGCATATTCTTT+TGG | + | chr3_2:76063934-76063953 | Msa0425660:intron | 35.0% |
| ! | GTTGCTTGCATATTCTTTTG+GGG | + | chr3_2:76063936-76063955 | Msa0425660:intron | 35.0% |
| ! | GGGATGGAAATTAAAAGCAT+TGG | - | chr3_2:76063974-76063993 | None:intergenic | 35.0% |
| AGTATAAGTAAAGCAGCTAC+AGG | - | chr3_2:76064012-76064031 | None:intergenic | 35.0% | |
| !!! | TAAAGGAGTTTTTTACCAGG+AGG | - | chr3_2:76064138-76064157 | None:intergenic | 35.0% |
| !!! | TGCTAAAGGAGTTTTTTACC+AGG | - | chr3_2:76064141-76064160 | None:intergenic | 35.0% |
| CAGCCAAAAAAGAAAAGACA+TGG | - | chr3_2:76064367-76064386 | None:intergenic | 35.0% | |
| !!! | CATGTCTTTTCTTTTTTGGC+TGG | + | chr3_2:76064365-76064384 | Msa0425660:intron | 35.0% |
| TTTCTTTGCCTCATTCTTTC+AGG | + | chr3_2:76064396-76064415 | Msa0425660:intron | 35.0% | |
| TCAACTGTCCTAAAAACTTC+AGG | + | chr3_2:76064503-76064522 | Msa0425660:intron | 35.0% | |
| CAACTGTCCTAAAAACTTCA+GGG | + | chr3_2:76064504-76064523 | Msa0425660:intron | 35.0% | |
| ! | AACAGTTCCCTGAAGTTTTT+AGG | - | chr3_2:76064514-76064533 | None:intergenic | 35.0% |
| ATCTTAACCACTCTTATGTC+TGG | + | chr3_2:76064542-76064561 | Msa0425660:intron | 35.0% | |
| TATATGTTCCAAAGAACCTG+TGG | + | chr3_2:76064693-76064712 | Msa0425660:three_prime_UTR | 35.0% | |
| ! | CTTGCATGTCCAGAATTTTA+TGG | + | chr3_2:76064860-76064879 | Msa0425660:three_prime_UTR | 35.0% |
| ! | CATGTCCAGAATTTTATGGT+TGG | + | chr3_2:76064864-76064883 | Msa0425660:three_prime_UTR | 35.0% |
| CAATAACATGTTCATTTGGC+TGG | + | chr3_2:76065056-76065075 | Msa0425660:three_prime_UTR | 35.0% | |
| TAGTCACATTTCACAACCCA+AGG | + | chr3_2:76060471-76060490 | Msa0425660:five_prime_UTR | 40.0% | |
| ACAACCCAAGGACATCAAAT+TGG | + | chr3_2:76060483-76060502 | Msa0425660:five_prime_UTR | 40.0% | |
| CAACCCAAGGACATCAAATT+GGG | + | chr3_2:76060484-76060503 | Msa0425660:five_prime_UTR | 40.0% | |
| AGTGAAAGAGAGAAAGAGAG+TGG | - | chr3_2:76060617-76060636 | None:intergenic | 40.0% | |
| AGCCATAATCACTTCTCTTG+AGG | - | chr3_2:76060921-76060940 | None:intergenic | 40.0% | |
| ATGGCTGTTGCTGAAAATGT+TGG | + | chr3_2:76060935-76060954 | Msa0425660:CDS | 40.0% | |
| !! | CTGACTTGATGAACCGATTT+TGG | - | chr3_2:76060963-76060982 | None:intergenic | 40.0% |
| CGGTTCATCAAGTCAGAATT+TGG | + | chr3_2:76060967-76060986 | Msa0425660:CDS | 40.0% | |
| CAGCTTCAAGACTCATCAAT+TGG | + | chr3_2:76061111-76061130 | Msa0425660:CDS | 40.0% | |
| TGTTCAGAACCAGCAGTTTA+TGG | + | chr3_2:76061144-76061163 | Msa0425660:CDS | 40.0% | |
| CATTGTTCACCATAAACTGC+TGG | - | chr3_2:76061156-76061175 | None:intergenic | 40.0% | |
| GGTATGAGAAATGGTGAGAA+TGG | + | chr3_2:76061193-76061212 | Msa0425660:CDS | 40.0% | |
| ATGAGAAATGGTGAGAATGG+AGG | + | chr3_2:76061196-76061215 | Msa0425660:CDS | 40.0% | |
| TAAGCGTGAAATGAGGGATT+TGG | + | chr3_2:76061228-76061247 | Msa0425660:CDS | 40.0% | |
| ! | TGATTATTTGTTAGCGACGG+AGG | - | chr3_2:76061298-76061317 | None:intergenic | 40.0% |
| CCGTCGCTAACAAATAATCA+TGG | + | chr3_2:76061298-76061317 | Msa0425660:CDS | 40.0% | |
| TCTGATATTGATCAGCTGGT+AGG | + | chr3_2:76061614-76061633 | Msa0425660:intron | 40.0% | |
| ! | TACGAGTTGACACGATAAGA+TGG | - | chr3_2:76062089-76062108 | None:intergenic | 40.0% |
| GGCAAATCGGAGAATAGAAT+TGG | - | chr3_2:76062154-76062173 | None:intergenic | 40.0% | |
| ! | TTATACATGCAGAGAGTGCA+AGG | + | chr3_2:76062275-76062294 | Msa0425660:intron | 40.0% |
| ! | TATACATGCAGAGAGTGCAA+GGG | + | chr3_2:76062276-76062295 | Msa0425660:intron | 40.0% |
| GGTAAAAATGTCGGATTGAC+AGG | - | chr3_2:76062376-76062395 | None:intergenic | 40.0% | |
| ! | TCAATCCGACATTTTTACCC+AGG | + | chr3_2:76062377-76062396 | Msa0425660:CDS | 40.0% |
| ! | CAATCCGACATTTTTACCCA+GGG | + | chr3_2:76062378-76062397 | Msa0425660:CDS | 40.0% |
| CTTTCGTTTGTGATGACTGA+TGG | + | chr3_2:76062481-76062500 | Msa0425660:intron | 40.0% | |
| CTGCACAAACATTGACAAGA+AGG | + | chr3_2:76062555-76062574 | Msa0425660:CDS | 40.0% | |
| TCTTACTTGGAGGAAATGCT+TGG | + | chr3_2:76062607-76062626 | Msa0425660:intron | 40.0% | |
| CTTTGAATCTATCTGTGGAG+AGG | + | chr3_2:76062730-76062749 | Msa0425660:CDS | 40.0% | |
| !!! | AGTTTTTAGAGCTTGAGTCC+TGG | + | chr3_2:76064103-76064122 | Msa0425660:intron | 40.0% |
| !! | ACAGCTTGGTTTGTGAGTTA+GGG | - | chr3_2:76064166-76064185 | None:intergenic | 40.0% |
| TGAAATCCAGCGAACCTTAT+AGG | - | chr3_2:76064475-76064494 | None:intergenic | 40.0% | |
| ! | AGGACAGTTGATTCAGTTCA+TGG | - | chr3_2:76064624-76064643 | None:intergenic | 40.0% |
| AAGTATCAACTAAACGCCAC+AGG | - | chr3_2:76064712-76064731 | None:intergenic | 40.0% | |
| TTGTTCTCTGTCTTGCACTA+TGG | + | chr3_2:76064732-76064751 | Msa0425660:three_prime_UTR | 40.0% | |
| ! | GGTATCTTTGTTTCCCATTG+CGG | + | chr3_2:76064753-76064772 | Msa0425660:three_prime_UTR | 40.0% |
| TTTGTTTCCCATTGCGGTAA+TGG | + | chr3_2:76064759-76064778 | Msa0425660:three_prime_UTR | 40.0% | |
| TTGTTTCCCATTGCGGTAAT+GGG | + | chr3_2:76064760-76064779 | Msa0425660:three_prime_UTR | 40.0% | |
| !! | CGTTTAGCTTGTAGAGTTGA+TGG | + | chr3_2:76064788-76064807 | Msa0425660:three_prime_UTR | 40.0% |
| GAAGCAGCATCTACTTCATA+TGG | - | chr3_2:76065007-76065026 | None:intergenic | 40.0% | |
| GTTATTGCAGTCGCAATAAC+CGG | - | chr3_2:76065043-76065062 | None:intergenic | 40.0% | |
| CGTCCCAATTTGATGTCCTT+GGG | - | chr3_2:76060490-76060509 | None:intergenic | 45.0% | |
| ACGTCCCAATTTGATGTCCT+TGG | - | chr3_2:76060491-76060510 | None:intergenic | 45.0% | |
| CAAATTGGGACGTTCTTCTC+AGG | + | chr3_2:76060498-76060517 | Msa0425660:five_prime_UTR | 45.0% | |
| TTGAGTCAGATGATACGACG+TGG | - | chr3_2:76061006-76061025 | None:intergenic | 45.0% | |
| CGTATCATCTGACTCAACTG+AGG | + | chr3_2:76061009-76061028 | Msa0425660:CDS | 45.0% | |
| ATCATCTGACTCAACTGAGG+TGG | + | chr3_2:76061012-76061031 | Msa0425660:CDS | 45.0% | |
| GTTGTCAAAGCTGAATCCCA+TGG | + | chr3_2:76061258-76061277 | Msa0425660:CDS | 45.0% | |
| AATCATGGCTACTTAGCTGC+TGG | + | chr3_2:76061313-76061332 | Msa0425660:CDS | 45.0% | |
| TAACGGCCAAACTAACCGTA+GGG | + | chr3_2:76061396-76061415 | Msa0425660:CDS | 45.0% | |
| ! | TCCATACCCTACGGTTAGTT+TGG | - | chr3_2:76061405-76061424 | None:intergenic | 45.0% |
| GCGAAGAGCGAATCATAAAG+TGG | + | chr3_2:76061547-76061566 | Msa0425660:CDS | 45.0% | |
| CGTGTCTGATATTGATCAGC+TGG | + | chr3_2:76061610-76061629 | Msa0425660:CDS | 45.0% | |
| TCTCTTTCTTAATTGCGGCC+AGG | + | chr3_2:76061765-76061784 | Msa0425660:CDS | 45.0% | |
| !! | ATAGCGTATCGGTTACTACC+TGG | - | chr3_2:76061786-76061805 | None:intergenic | 45.0% |
| TCGTGTCAACTCGTATTTCC+TGG | + | chr3_2:76062094-76062113 | Msa0425660:intron | 45.0% | |
| AACTCGTATTTCCTGGCTGT+AGG | + | chr3_2:76062101-76062120 | Msa0425660:intron | 45.0% | |
| ACAATCAACAACCTACAGCC+AGG | - | chr3_2:76062115-76062134 | None:intergenic | 45.0% | |
| ! | GGCTGTAGGTTGTTGATTGT+CGG | + | chr3_2:76062115-76062134 | Msa0425660:intron | 45.0% |
| ! | GCTGTAGGTTGTTGATTGTC+GGG | + | chr3_2:76062116-76062135 | Msa0425660:intron | 45.0% |
| ! | GTTGTTGATTGTCGGGTATG+CGG | + | chr3_2:76062123-76062142 | Msa0425660:CDS | 45.0% |
| ! | AAGTCTGTCTGGAACTATGC+TGG | + | chr3_2:76062306-76062325 | Msa0425660:CDS | 45.0% |
| ! | AGTCTGTCTGGAACTATGCT+GGG | + | chr3_2:76062307-76062326 | Msa0425660:CDS | 45.0% |
| ! | TTATCTAGGTCCATCGACTG+AGG | + | chr3_2:76062926-76062945 | Msa0425660:intron | 45.0% |
| GGGATTACCAGCATTCAACT+CGG | + | chr3_2:76062956-76062975 | Msa0425660:CDS | 45.0% | |
| ! | ATGCAATCCGAGTTGAATGC+TGG | - | chr3_2:76062966-76062985 | None:intergenic | 45.0% |
| ! | TGCATTTGTTGAGTTCGCAG+TGG | + | chr3_2:76062981-76063000 | Msa0425660:CDS | 45.0% |
| CCGGCAGTAAACTAATCTCA+GGG | - | chr3_2:76063107-76063126 | None:intergenic | 45.0% | |
| !! | CCCTGAGATTAGTTTACTGC+CGG | + | chr3_2:76063104-76063123 | Msa0425660:intron | 45.0% |
| !! | CCTGAGATTAGTTTACTGCC+GGG | + | chr3_2:76063105-76063124 | Msa0425660:intron | 45.0% |
| GATGTAGTTATAGGGAGGGA+GGG | - | chr3_2:76063163-76063182 | None:intergenic | 45.0% | |
| ACAGGAGATGCGGAAAAAGT+GGG | - | chr3_2:76063994-76064013 | None:intergenic | 45.0% | |
| TACAGGAGATGCGGAAAAAG+TGG | - | chr3_2:76063995-76064014 | None:intergenic | 45.0% | |
| TAAAGCAGCTACAGGAGATG+CGG | - | chr3_2:76064004-76064023 | None:intergenic | 45.0% | |
| !!! | TTTTTTACCAGGAGGCAGGA+GGG | - | chr3_2:76064130-76064149 | None:intergenic | 45.0% |
| TGTGAGTTAGGGGATGCTAA+AGG | - | chr3_2:76064155-76064174 | None:intergenic | 45.0% | |
| !! | CAGCTTGGTTTGTGAGTTAG+GGG | - | chr3_2:76064165-76064184 | None:intergenic | 45.0% |
| !! | GACAGCTTGGTTTGTGAGTT+AGG | - | chr3_2:76064167-76064186 | None:intergenic | 45.0% |
| TTACTAAGGGGGAGAAGATC+AGG | - | chr3_2:76064259-76064278 | None:intergenic | 45.0% | |
| ACTCTCAGCCTGAAAGAATG+AGG | - | chr3_2:76064407-76064426 | None:intergenic | 45.0% | |
| ! | AAGCTGCAGTGGTGTGATTT+TGG | + | chr3_2:76064441-76064460 | Msa0425660:CDS | 45.0% |
| ! | AGCTGCAGTGGTGTGATTTT+GGG | + | chr3_2:76064442-76064461 | Msa0425660:CDS | 45.0% |
| ACTCTTATGTCTGGTGTGCA+GGG | + | chr3_2:76064551-76064570 | Msa0425660:intron | 45.0% | |
| ! | GATTCAGTTCATGGACTACG+AGG | - | chr3_2:76064615-76064634 | None:intergenic | 45.0% |
| AATCAACTGTCCTTGCTGCT+GGG | + | chr3_2:76064631-76064650 | Msa0425660:three_prime_UTR | 45.0% | |
| ACTAAACGCCACAGGTTCTT+TGG | - | chr3_2:76064704-76064723 | None:intergenic | 45.0% | |
| GAAGAACCCATTACCGCAAT+GGG | - | chr3_2:76064769-76064788 | None:intergenic | 45.0% | |
| !! | GTAGAGTTGATGGTACTTCG+AGG | + | chr3_2:76064798-76064817 | Msa0425660:three_prime_UTR | 45.0% |
| !!! | TTTTATTTATTTATTTTTTC+TGG | + | chr3_2:76060648-76060667 | Msa0425660:intron | 5.0% |
| !!! | TTTATTTATTTATTTTTTCT+GGG | + | chr3_2:76060649-76060668 | Msa0425660:intron | 5.0% |
| TTGGGACGTTCTTCTCAGGA+AGG | + | chr3_2:76060502-76060521 | Msa0425660:five_prime_UTR | 50.0% | |
| AGGTGGAGAAATCGAAACCG+AGG | + | chr3_2:76061029-76061048 | Msa0425660:CDS | 50.0% | |
| TTCACATCCTGATCGGTCCT+CGG | - | chr3_2:76061049-76061068 | None:intergenic | 50.0% | |
| AAAGCTGAATCCCATGGCTG+AGG | + | chr3_2:76061264-76061283 | Msa0425660:CDS | 50.0% | |
| GGCACAAATTCCTCAGCCAT+GGG | - | chr3_2:76061277-76061296 | None:intergenic | 50.0% | |
| AGGCACAAATTCCTCAGCCA+TGG | - | chr3_2:76061278-76061297 | None:intergenic | 50.0% | |
| CTAACGGCCAAACTAACCGT+AGG | + | chr3_2:76061395-76061414 | Msa0425660:CDS | 50.0% | |
| GCCAAACTAACCGTAGGGTA+TGG | + | chr3_2:76061401-76061420 | Msa0425660:intron | 50.0% | |
| ! | GTCTGTCTGGAACTATGCTG+GGG | + | chr3_2:76062308-76062327 | Msa0425660:CDS | 50.0% |
| TGGAAGGCAGCACTCTCAAT+GGG | - | chr3_2:76062339-76062358 | None:intergenic | 50.0% | |
| TTGGAAGGCAGCACTCTCAA+TGG | - | chr3_2:76062340-76062359 | None:intergenic | 50.0% | |
| !!! | GGTGCAATGGCAGTTTTGGA+AGG | - | chr3_2:76062355-76062374 | None:intergenic | 50.0% |
| ! | GACAGGTGCAATGGCAGTTT+TGG | - | chr3_2:76062359-76062378 | None:intergenic | 50.0% |
| TGTCGGATTGACAGGTGCAA+TGG | - | chr3_2:76062368-76062387 | None:intergenic | 50.0% | |
| ! | TCCATCGACTGAGGCTTCTT+GGG | + | chr3_2:76062935-76062954 | Msa0425660:CDS | 50.0% |
| CCCGGCAGTAAACTAATCTC+AGG | - | chr3_2:76063108-76063127 | None:intergenic | 50.0% | |
| GGATGTAGTTATAGGGAGGG+AGG | - | chr3_2:76063164-76063183 | None:intergenic | 50.0% | |
| ! | AGGACTTTTAGTAGGCGGTG+TGG | - | chr3_2:76063232-76063251 | None:intergenic | 50.0% |
| TCACTGCCAACCAAGGTAAG+CGG | - | chr3_2:76063910-76063929 | None:intergenic | 50.0% | |
| CACAAGTTCACTGCCAACCA+AGG | - | chr3_2:76063917-76063936 | None:intergenic | 50.0% | |
| GAGATGCGGAAAAAGTGGGA+TGG | - | chr3_2:76063990-76064009 | None:intergenic | 50.0% | |
| !!! | GTTTTTTACCAGGAGGCAGG+AGG | - | chr3_2:76064131-76064150 | None:intergenic | 50.0% |
| !!! | GGAGTTTTTTACCAGGAGGC+AGG | - | chr3_2:76064134-76064153 | None:intergenic | 50.0% |
| TGAGTCTCAAGCAGACAGCT+TGG | - | chr3_2:76064180-76064199 | None:intergenic | 50.0% | |
| !! | ATTGCAGCTCTAAGCTGCAG+TGG | + | chr3_2:76064430-76064449 | Msa0425660:CDS | 50.0% |
| !! | TTTTGGGTGCGCTGCCTATA+AGG | + | chr3_2:76064458-76064477 | Msa0425660:CDS | 50.0% |
| CTGCACACCAGACATAAGAG+TGG | - | chr3_2:76064552-76064571 | None:intergenic | 50.0% | |
| CACTCTTATGTCTGGTGTGC+AGG | + | chr3_2:76064550-76064569 | Msa0425660:intron | 50.0% | |
| TACGAGGAGAAGAACGAGCA+CGG | - | chr3_2:76064599-76064618 | None:intergenic | 50.0% | |
| GAATCAACTGTCCTTGCTGC+TGG | + | chr3_2:76064630-76064649 | Msa0425660:three_prime_UTR | 50.0% | |
| ATCAACTGTCCTTGCTGCTG+GGG | + | chr3_2:76064632-76064651 | Msa0425660:three_prime_UTR | 50.0% | |
| CGAAGAACCCATTACCGCAA+TGG | - | chr3_2:76064770-76064789 | None:intergenic | 50.0% | |
| ! | TGCTTCTCACCTTGCTATGC+CGG | + | chr3_2:76065021-76065040 | Msa0425660:three_prime_UTR | 50.0% |
| TCGCAATAACCGGCATAGCA+AGG | - | chr3_2:76065033-76065052 | None:intergenic | 50.0% | |
| ATCGAAACCGAGGACCGATC+AGG | + | chr3_2:76061039-76061058 | Msa0425660:CDS | 55.0% | |
| CTAGGTTACCGAAGAGCAGC+TGG | + | chr3_2:76061738-76061757 | Msa0425660:intron | 55.0% | |
| GAGAGATGCCAGCTGCTCTT+CGG | - | chr3_2:76061749-76061768 | None:intergenic | 55.0% | |
| AGGGCTGCTGTAAGTCTGTC+TGG | + | chr3_2:76062295-76062314 | Msa0425660:CDS | 55.0% | |
| ! | GTCCATCGACTGAGGCTTCT+TGG | + | chr3_2:76062934-76062953 | Msa0425660:CDS | 55.0% |
| ! | CCATCGACTGAGGCTTCTTG+GGG | + | chr3_2:76062936-76062955 | Msa0425660:CDS | 55.0% |
| ! | CAACCTTCTGCCGCTTACCT+TGG | + | chr3_2:76063897-76063916 | Msa0425660:intron | 55.0% |
| CAACCAAGGTAAGCGGCAGA+AGG | - | chr3_2:76063903-76063922 | None:intergenic | 55.0% | |
| ! | CTTCTGCCGCTTACCTTGGT+TGG | + | chr3_2:76063901-76063920 | Msa0425660:intron | 55.0% |
| !! | GCACGGACTGGTGTCTTTGA+CGG | - | chr3_2:76064582-76064601 | None:intergenic | 55.0% |
| TTAGCTGCTGGACCTGCTGC+TGG | + | chr3_2:76061325-76061344 | Msa0425660:CDS | 60.0% | |
| TAGCTGCTGGACCTGCTGCT+GGG | + | chr3_2:76061326-76061345 | Msa0425660:CDS | 60.0% | |
| GGGTAACCAAACCCAGCAGC+AGG | - | chr3_2:76061340-76061359 | None:intergenic | 60.0% | |
| CCCCAAGAAGCCTCAGTCGA+TGG | - | chr3_2:76062939-76062958 | None:intergenic | 60.0% | |
| GCGCTGCCTATAAGGTTCGC+TGG | + | chr3_2:76064466-76064485 | Msa0425660:intron | 60.0% | |
| GGAGAAGAACGAGCACGGAC+TGG | - | chr3_2:76064594-76064613 | None:intergenic | 60.0% | |
| GCAGTCAAACCCCAGCAGCA+AGG | - | chr3_2:76064644-76064663 | None:intergenic | 60.0% | |
| GCTGGACCTGCTGCTGGGTT+TGG | + | chr3_2:76061331-76061350 | Msa0425660:CDS | 65.0% | |
| TCCTGGACCCTCCTGCCTCC+TGG | + | chr3_2:76064120-76064139 | Msa0425660:intron | 70.0% | |
| ACCAGGAGGCAGGAGGGTCC+AGG | - | chr3_2:76064124-76064143 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 76060382 | 76065093 | 76060382 | ID=Msa0425660;Name=Msa0425660 |
| chr3_2 | mRNA | 76060382 | 76065093 | 76060382 | ID=Msa0425660-mRNA-1;Parent=Msa0425660;Name=Msa0425660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=286|1|1|1|0.9|0.81|11|467|373 |
| chr3_2 | exon | 76060382 | 76060603 | 76060382 | ID=Msa0425660-mRNA-1:exon:19541;Parent=Msa0425660-mRNA-1 |
| chr3_2 | exon | 76060871 | 76061417 | 76060871 | ID=Msa0425660-mRNA-1:exon:19542;Parent=Msa0425660-mRNA-1 |
| chr3_2 | exon | 76061518 | 76061631 | 76061518 | ID=Msa0425660-mRNA-1:exon:19543;Parent=Msa0425660-mRNA-1 |
| chr3_2 | exon | 76061742 | 76061786 | 76061742 | ID=Msa0425660-mRNA-1:exon:19544;Parent=Msa0425660-mRNA-1 |
| chr3_2 | exon | 76062123 | 76062195 | 76062123 | ID=Msa0425660-mRNA-1:exon:19545;Parent=Msa0425660-mRNA-1 |
| chr3_2 | exon | 76062287 | 76062399 | 76062287 | ID=Msa0425660-mRNA-1:exon:19546;Parent=Msa0425660-mRNA-1 |
| chr3_2 | exon | 76062517 | 76062576 | 76062517 | ID=Msa0425660-mRNA-1:exon:19547;Parent=Msa0425660-mRNA-1 |
| chr3_2 | exon | 76062704 | 76062751 | 76062704 | ID=Msa0425660-mRNA-1:exon:19548;Parent=Msa0425660-mRNA-1 |
| chr3_2 | exon | 76062934 | 76063002 | 76062934 | ID=Msa0425660-mRNA-1:exon:19549;Parent=Msa0425660-mRNA-1 |
| chr3_2 | exon | 76064418 | 76064479 | 76064418 | ID=Msa0425660-mRNA-1:exon:19550;Parent=Msa0425660-mRNA-1 |
| chr3_2 | exon | 76064572 | 76065093 | 76064572 | ID=Msa0425660-mRNA-1:exon:19551;Parent=Msa0425660-mRNA-1 |
| chr3_2 | five_prime_UTR | 76060382 | 76060603 | 76060382 | ID=Msa0425660-mRNA-1:five_prime_utr;Parent=Msa0425660-mRNA-1 |
| chr3_2 | five_prime_UTR | 76060871 | 76060934 | 76060871 | ID=Msa0425660-mRNA-1:five_prime_utr;Parent=Msa0425660-mRNA-1 |
| chr3_2 | CDS | 76060935 | 76061417 | 76060935 | ID=Msa0425660-mRNA-1:cds;Parent=Msa0425660-mRNA-1 |
| chr3_2 | CDS | 76061518 | 76061631 | 76061518 | ID=Msa0425660-mRNA-1:cds;Parent=Msa0425660-mRNA-1 |
| chr3_2 | CDS | 76061742 | 76061786 | 76061742 | ID=Msa0425660-mRNA-1:cds;Parent=Msa0425660-mRNA-1 |
| chr3_2 | CDS | 76062123 | 76062195 | 76062123 | ID=Msa0425660-mRNA-1:cds;Parent=Msa0425660-mRNA-1 |
| chr3_2 | CDS | 76062287 | 76062399 | 76062287 | ID=Msa0425660-mRNA-1:cds;Parent=Msa0425660-mRNA-1 |
| chr3_2 | CDS | 76062517 | 76062576 | 76062517 | ID=Msa0425660-mRNA-1:cds;Parent=Msa0425660-mRNA-1 |
| chr3_2 | CDS | 76062704 | 76062751 | 76062704 | ID=Msa0425660-mRNA-1:cds;Parent=Msa0425660-mRNA-1 |
| chr3_2 | CDS | 76062934 | 76063002 | 76062934 | ID=Msa0425660-mRNA-1:cds;Parent=Msa0425660-mRNA-1 |
| chr3_2 | CDS | 76064418 | 76064479 | 76064418 | ID=Msa0425660-mRNA-1:cds;Parent=Msa0425660-mRNA-1 |
| chr3_2 | CDS | 76064572 | 76064626 | 76064572 | ID=Msa0425660-mRNA-1:cds;Parent=Msa0425660-mRNA-1 |
| chr3_2 | three_prime_UTR | 76064627 | 76065093 | 76064627 | ID=Msa0425660-mRNA-1:three_prime_utr;Parent=Msa0425660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
