Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516790 | XP_003602357.2 | 97.872 | 376 | 5 | 1 | 1 | 373 | 1 | 376 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516790 | sp|Q9LPI5|CID11_ARATH | 70.833 | 288 | 78 | 3 | 90 | 373 | 71 | 356 | 6.19e-142 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516790 | G7J8B0 | 97.872 | 376 | 5 | 1 | 1 | 373 | 1 | 376 | 0.0 | 764 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028620 | Msa0516790 | 0.823311 | 1.483233e-53 | -8.615850e-47 |
| Msa0043980 | Msa0516790 | 0.819516 | 1.114762e-52 | -8.615850e-47 |
| Msa0079070 | Msa0516790 | 0.809035 | 2.308788e-50 | -8.615850e-47 |
| Msa0115790 | Msa0516790 | 0.835879 | 1.297707e-56 | -8.615850e-47 |
| Msa0127650 | Msa0516790 | 0.808399 | 3.157263e-50 | -8.615850e-47 |
| Msa0127800 | Msa0516790 | 0.808803 | 2.588505e-50 | -8.615850e-47 |
| Msa0218370 | Msa0516790 | 0.815216 | 1.035588e-51 | -8.615850e-47 |
| Msa0369950 | Msa0516790 | 0.815600 | 8.505837e-52 | -8.615850e-47 |
| Msa0417360 | Msa0516790 | 0.813974 | 1.950775e-51 | -8.615850e-47 |
| Msa0425660 | Msa0516790 | 0.964318 | 3.547595e-123 | -8.615850e-47 |
| Msa0428590 | Msa0516790 | 0.809351 | 1.975672e-50 | -8.615850e-47 |
| Msa0473190 | Msa0516790 | 0.803958 | 2.718614e-49 | -8.615850e-47 |
| Msa0260780 | Msa0516790 | 0.813049 | 3.116247e-51 | -8.615850e-47 |
| Msa0287870 | Msa0516790 | 0.834447 | 2.981834e-56 | -8.615850e-47 |
| Msa0363790 | Msa0516790 | 0.825137 | 5.522545e-54 | -8.615850e-47 |
| Msa0516790 | Msa0516800 | 0.800088 | 1.698338e-48 | -8.615850e-47 |
| Msa0516790 | Msa0861540 | 0.815530 | 8.819474e-52 | -8.615850e-47 |
| Msa0516790 | Msa0963270 | 0.800133 | 1.662665e-48 | -8.615850e-47 |
| Msa0516790 | Msa0965080 | 0.814924 | 1.202403e-51 | -8.615850e-47 |
| Msa0516790 | Msa0965290 | 0.807303 | 5.398739e-50 | -8.615850e-47 |
| Msa0516790 | Msa0999680 | 0.800313 | 1.527951e-48 | -8.615850e-47 |
| Msa0516790 | Msa1100050 | 0.808508 | 2.991782e-50 | -8.615850e-47 |
| Msa0516790 | Msa1102220 | 0.810117 | 1.352066e-50 | -8.615850e-47 |
| Msa0516790 | Msa1114410 | 0.803204 | 3.898330e-49 | -8.615850e-47 |
| Msa0516790 | Msa1122150 | 0.805260 | 1.454416e-49 | -8.615850e-47 |
| Msa0516790 | Msa1160560 | 0.803161 | 3.978687e-49 | -8.615850e-47 |
| Msa0516790 | Msa1174040 | 0.804474 | 2.122802e-49 | -8.615850e-47 |
| Msa0516790 | Msa1190920 | 0.811393 | 7.161866e-51 | -8.615850e-47 |
| Msa0516790 | Msa1234000 | 0.832466 | 9.304262e-56 | -8.615850e-47 |
| Msa0516790 | Msa1234070 | 0.828642 | 8.025524e-55 | -8.615850e-47 |
| Msa0516790 | Msa1250530 | 0.813976 | 1.948889e-51 | -8.615850e-47 |
| Msa0516790 | Msa1305810 | 0.800522 | 1.385401e-48 | -8.615850e-47 |
| Msa0516790 | Msa1458680 | 0.828525 | 8.565886e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516790 | MtrunA17_Chr3g0127761 | 97.872 | 376 | 5 | 1 | 1 | 373 | 1 | 376 | 0.0 | 764 |
| Msa0516790 | MtrunA17_Chr3g0127771 | 77.078 | 397 | 52 | 11 | 1 | 373 | 1 | 382 | 0.0 | 581 |
| Msa0516790 | MtrunA17_Chr2g0312971 | 63.534 | 266 | 95 | 1 | 102 | 367 | 28 | 291 | 1.21e-118 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516790 | AT1G32790.1 | 70.833 | 288 | 78 | 3 | 90 | 373 | 71 | 356 | 6.29e-143 | 410 |
| Msa0516790 | AT4G10610.1 | 70.357 | 280 | 78 | 3 | 93 | 371 | 57 | 332 | 7.26e-143 | 409 |
| Msa0516790 | AT3G49390.2 | 58.082 | 365 | 132 | 7 | 1 | 365 | 1 | 344 | 1.07e-140 | 404 |
| Msa0516790 | AT3G49390.2 | 46.465 | 99 | 47 | 4 | 181 | 278 | 258 | 351 | 4.61e-14 | 73.2 |
| Msa0516790 | AT3G49390.3 | 58.082 | 365 | 132 | 7 | 1 | 365 | 1 | 344 | 1.07e-140 | 404 |
| Msa0516790 | AT3G49390.3 | 46.465 | 99 | 47 | 4 | 181 | 278 | 258 | 351 | 4.61e-14 | 73.2 |
| Msa0516790 | AT3G49390.1 | 58.082 | 365 | 132 | 7 | 1 | 365 | 1 | 344 | 1.07e-140 | 404 |
| Msa0516790 | AT3G49390.1 | 46.465 | 99 | 47 | 4 | 181 | 278 | 258 | 351 | 4.61e-14 | 73.2 |
| Msa0516790 | AT1G32790.2 | 69.963 | 273 | 77 | 2 | 90 | 358 | 71 | 342 | 9.94e-134 | 388 |
| Msa0516790 | AT1G32790.2 | 40.000 | 90 | 50 | 2 | 286 | 372 | 173 | 261 | 6.41e-12 | 67.0 |
| Msa0516790 | AT4G10610.2 | 69.811 | 265 | 75 | 3 | 93 | 356 | 57 | 317 | 2.79e-133 | 384 |
| Msa0516790 | AT1G53650.2 | 60.806 | 273 | 91 | 3 | 101 | 373 | 49 | 305 | 7.46e-117 | 342 |
| Msa0516790 | AT3G14450.1 | 54.194 | 310 | 121 | 4 | 70 | 367 | 19 | 319 | 1.45e-115 | 339 |
| Msa0516790 | AT1G53650.1 | 59.498 | 279 | 91 | 4 | 101 | 373 | 49 | 311 | 2.26e-110 | 325 |
| Msa0516790 | AT5G24440.1 | 48.387 | 372 | 134 | 6 | 1 | 369 | 1 | 317 | 3.21e-110 | 325 |
Find 129 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGACTTGATGAACCGATTT+TGG | 0.114098 | 3_4:+68319461 | None:intergenic |
| AAGCTGCAGTGGTGTGATTT+TGG | 0.171226 | 3_4:-68315972 | Msa0516790:CDS |
| CGGTTCATCAAGTCAGAATT+TGG | 0.175529 | 3_4:-68319454 | Msa0516790:CDS |
| TGAAGCTGTAATTACCATTT+TGG | 0.185564 | 3_4:+68319325 | None:intergenic |
| TGTTCAGAACCAGCAGTTTA+TGG | 0.209925 | 3_4:-68319277 | Msa0516790:CDS |
| ACAACCCAAGGACATCAAAT+TGG | 0.224436 | 3_4:-68319934 | Msa0516790:five_prime_UTR |
| TTAGTCATGAACTGTTTATT+TGG | 0.228973 | 3_4:-68315483 | Msa0516790:three_prime_UTR |
| TTAAGAAGTATAAAATTGTT+AGG | 0.257529 | 3_4:+68319063 | None:intergenic |
| TGAAATCCAGCGAACCTTAT+AGG | 0.263840 | 3_4:+68315941 | None:intergenic |
| ACTAAACGCCACAGGTTCTT+TGG | 0.289502 | 3_4:+68315712 | None:intergenic |
| GACAGGTGCAATGGCAGTTT+TGG | 0.297685 | 3_4:+68318057 | None:intergenic |
| TACCTCAAGAGAAGTGATTA+TGG | 0.298628 | 3_4:-68319505 | Msa0516790:exon |
| GTCCATCGACTGAGGCTTCT+TGG | 0.311133 | 3_4:-68317479 | Msa0516790:CDS |
| CGTTTAGCTTGTAGAGTTGA+TGG | 0.312684 | 3_4:-68315625 | Msa0516790:three_prime_UTR |
| TTTGTTTCCCATTGCGGTAA+TGG | 0.315893 | 3_4:-68315654 | Msa0516790:three_prime_UTR |
| TTAGCTGCTGGACCTGCTGC+TGG | 0.319582 | 3_4:-68319096 | Msa0516790:CDS |
| TTGTTTCCCATTGCGGTAAT+GGG | 0.324018 | 3_4:-68315653 | Msa0516790:three_prime_UTR |
| AAAAGTCAGTTCAGCGAAAT+CGG | 0.324233 | 3_4:-68319888 | Msa0516790:five_prime_UTR |
| TCCATACCCTACGGTTAGTT+TGG | 0.330085 | 3_4:+68319019 | None:intergenic |
| GGCAAATCGGAGAATAGAAT+TGG | 0.332888 | 3_4:+68318262 | None:intergenic |
| AACATCCAACCATAAAATTC+TGG | 0.333607 | 3_4:+68315544 | None:intergenic |
| AGCGAATCATAAAGTGGATA+TGG | 0.334771 | 3_4:-68318868 | Msa0516790:CDS |
| TTGTTCTCTGTCTTGCACTA+TGG | 0.337113 | 3_4:-68315681 | Msa0516790:three_prime_UTR |
| GCTGGACCTGCTGCTGGGTT+TGG | 0.337646 | 3_4:-68319090 | Msa0516790:CDS |
| TCCATCGACTGAGGCTTCTT+GGG | 0.338255 | 3_4:-68317478 | Msa0516790:CDS |
| TTCATTGAGTTTACAGATGA+AGG | 0.345676 | 3_4:-68318239 | Msa0516790:intron |
| TAAGCGTGAAATGAGGGATT+TGG | 0.349931 | 3_4:-68319193 | Msa0516790:CDS |
| TTCAACCATCAACACCAAAA+TGG | 0.363787 | 3_4:-68319339 | Msa0516790:CDS |
| CGTCCCAATTTGATGTCCTT+GGG | 0.376502 | 3_4:+68319930 | None:intergenic |
| AGAAAAGAGAAGAGATGATT+AGG | 0.382555 | 3_4:-68318845 | Msa0516790:CDS |
| AGGACAGTTGATTCAGTTCA+TGG | 0.388261 | 3_4:+68315792 | None:intergenic |
| GGCTGTAGGTTGTTGATTGT+CGG | 0.389761 | 3_4:-68318298 | Msa0516790:intron |
| GAATCAACTGTCCTTGCTGC+TGG | 0.399371 | 3_4:-68315783 | Msa0516790:three_prime_UTR |
| ACGTCCCAATTTGATGTCCT+TGG | 0.409430 | 3_4:+68319929 | None:intergenic |
| CAGCTTCAAGACTCATCAAA+TGG | 0.409609 | 3_4:-68319310 | Msa0516790:CDS |
| AAGTCTGTCTGGAACTATGC+TGG | 0.410248 | 3_4:-68318107 | Msa0516790:CDS |
| CATACTTGAATGGGTAGTTA+TGG | 0.425149 | 3_4:-68320054 | None:intergenic |
| CAAATTGGGACGTTCTTCTC+AGG | 0.425979 | 3_4:-68319919 | Msa0516790:five_prime_UTR |
| TGCTTCTCACCTTGCTATGC+CGG | 0.432154 | 3_4:-68315392 | Msa0516790:three_prime_UTR |
| AATCAACTGTCCTTGCTGCT+GGG | 0.435554 | 3_4:-68315782 | Msa0516790:three_prime_UTR |
| AAGAATGGCTACACTACTAA+TGG | 0.438109 | 3_4:-68318900 | Msa0516790:CDS |
| ATCGAAACCGAGGACCGATC+AGG | 0.441198 | 3_4:-68319382 | Msa0516790:CDS |
| TAAGAAGTATAAAATTGTTA+GGG | 0.444999 | 3_4:+68319064 | None:intergenic |
| TATTGTGAAGAGAAATGAAA+AGG | 0.445580 | 3_4:+68319849 | None:intergenic |
| AGGGCTGCTGTAAGTCTGTC+TGG | 0.447364 | 3_4:-68318118 | Msa0516790:CDS |
| TTCACATCCTGATCGGTCCT+CGG | 0.451129 | 3_4:+68319375 | None:intergenic |
| CGTGTCTGATATTGATCAGC+TGG | 0.452007 | 3_4:-68318811 | Msa0516790:intron |
| CAATAACATGTTCATTTGGC+TGG | 0.453807 | 3_4:-68315357 | Msa0516790:three_prime_UTR |
| GTTATTGCAGTCGCAATAAC+CGG | 0.455061 | 3_4:+68315373 | None:intergenic |
| GAAAATGTTGGTGCCAAAAT+CGG | 0.469626 | 3_4:-68319474 | Msa0516790:CDS |
| TAGCTGCTGGACCTGCTGCT+GGG | 0.473262 | 3_4:-68319095 | Msa0516790:CDS |
| ACTGCAATAACATGTTCATT+TGG | 0.476366 | 3_4:-68315361 | Msa0516790:three_prime_UTR |
| TTGGAAGGCAGCACTCTCAA+TGG | 0.478989 | 3_4:+68318076 | None:intergenic |
| TAAACTCAATGAAGGCAAAT+CGG | 0.481637 | 3_4:+68318249 | None:intergenic |
| CAACCCAAGGACATCAAATT+GGG | 0.481848 | 3_4:-68319933 | Msa0516790:five_prime_UTR |
| AATCTGATATTAGAGAATAA+AGG | 0.482329 | 3_4:-68319539 | Msa0516790:five_prime_UTR |
| CTAGGTTACCGAAGAGCAGC+TGG | 0.486453 | 3_4:-68318683 | Msa0516790:intron |
| GGTATGAGAAATGGTGAGAA+TGG | 0.491432 | 3_4:-68319228 | Msa0516790:CDS |
| TTCATCTGTAAACTCAATGA+AGG | 0.492617 | 3_4:+68318241 | None:intergenic |
| TGGAAGGCAGCACTCTCAAT+GGG | 0.493363 | 3_4:+68318077 | None:intergenic |
| CAGTTTATGGTGAACAATGA+TGG | 0.493578 | 3_4:-68319264 | Msa0516790:CDS |
| GCTGTAGGTTGTTGATTGTC+GGG | 0.497702 | 3_4:-68318297 | Msa0516790:intron |
| GAAATGAAAAGGGTGTTGTT+CGG | 0.503257 | 3_4:+68319860 | None:intergenic |
| GAGAGATGCCAGCTGCTCTT+CGG | 0.503624 | 3_4:+68318675 | None:intergenic |
| GAAGAACCCATTACCGCAAT+GGG | 0.504665 | 3_4:+68315647 | None:intergenic |
| GAAGCAGCATCTACTTCATA+TGG | 0.505199 | 3_4:+68315409 | None:intergenic |
| GTGATGAATGGTATGAGAAA+TGG | 0.508297 | 3_4:-68319237 | Msa0516790:CDS |
| GCATCTCTCTTTCTTAATTG+CGG | 0.509572 | 3_4:-68318661 | Msa0516790:CDS |
| AATAATTATGCTAATGCTAA+CGG | 0.512676 | 3_4:-68319042 | Msa0516790:CDS |
| ATTGTGAAGAGAAATGAAAA+GGG | 0.512927 | 3_4:+68319850 | None:intergenic |
| GTTTCAGTCTGAAGATGAAA+GGG | 0.512987 | 3_4:-68317903 | Msa0516790:intron |
| GCAGTCAAACCCCAGCAGCA+AGG | 0.514919 | 3_4:+68315772 | None:intergenic |
| TGTTTCAGTCTGAAGATGAA+AGG | 0.515245 | 3_4:-68317904 | Msa0516790:intron |
| GCAAATCGGAGAATAGAATT+GGG | 0.516838 | 3_4:+68318263 | None:intergenic |
| AAAGAGAAGAGATGATTAGG+AGG | 0.524216 | 3_4:-68318842 | Msa0516790:CDS |
| AATCATGGCTACTTAGCTGC+TGG | 0.525224 | 3_4:-68319108 | Msa0516790:CDS |
| GGTATCTTTGTTTCCCATTG+CGG | 0.527623 | 3_4:-68315660 | Msa0516790:three_prime_UTR |
| GCACGGACTGGTGTCTTTGA+CGG | 0.529105 | 3_4:+68315834 | None:intergenic |
| CATTGTTCACCATAAACTGC+TGG | 0.530549 | 3_4:+68319268 | None:intergenic |
| GTAGAGTTGATGGTACTTCG+AGG | 0.532448 | 3_4:-68315615 | Msa0516790:three_prime_UTR |
| TTATACATGCAGAGAGTGCA+AGG | 0.533976 | 3_4:-68318138 | Msa0516790:intron |
| AGTCTGTCTGGAACTATGCT+GGG | 0.535887 | 3_4:-68318106 | Msa0516790:CDS |
| GGGTAACCAAACCCAGCAGC+AGG | 0.537106 | 3_4:+68319084 | None:intergenic |
| AGGCACAAATTCCTCAGCCA+TGG | 0.537373 | 3_4:+68319146 | None:intergenic |
| AGCTTCAAGACTCATCAAAT+GGG | 0.539915 | 3_4:-68319309 | Msa0516790:CDS |
| CTGCACAAACATTGACAAGA+AGG | 0.541546 | 3_4:-68317858 | Msa0516790:intron |
| CCATCGACTGAGGCTTCTTG+GGG | 0.542498 | 3_4:-68317477 | Msa0516790:CDS |
| ATGCAATCCGAGTTGAATGC+TGG | 0.545014 | 3_4:+68317450 | None:intergenic |
| ATCAACTGTCCTTGCTGCTG+GGG | 0.545550 | 3_4:-68315781 | Msa0516790:three_prime_UTR |
| CCCCAAGAAGCCTCAGTCGA+TGG | 0.545706 | 3_4:+68317477 | None:intergenic |
| GGAGAAGAACGAGCACGGAC+TGG | 0.546895 | 3_4:+68315822 | None:intergenic |
| GCGAAGAGCGAATCATAAAG+TGG | 0.552369 | 3_4:-68318874 | Msa0516790:CDS |
| CCGTCGCTAACAAATAATCA+TGG | 0.562558 | 3_4:-68319123 | Msa0516790:CDS |
| TCTCTTTCTTAATTGCGGCC+AGG | 0.567558 | 3_4:-68318656 | Msa0516790:intron |
| CTTTGAATCTATCTGTGGAG+AGG | 0.569385 | 3_4:-68317683 | Msa0516790:intron |
| CGAAGAACCCATTACCGCAA+TGG | 0.569551 | 3_4:+68315646 | None:intergenic |
| AATGATGGATATGTGATGAA+TGG | 0.569689 | 3_4:-68319249 | Msa0516790:CDS |
| GTTGTTGTTCACATCCTGAT+CGG | 0.571533 | 3_4:+68319368 | None:intergenic |
| TGATTATTTGTTAGCGACGG+AGG | 0.572810 | 3_4:+68319126 | None:intergenic |
| CACTTCTTTGAATCTATCTG+TGG | 0.573834 | 3_4:-68317688 | Msa0516790:CDS |
| GGCACAAATTCCTCAGCCAT+GGG | 0.576547 | 3_4:+68319147 | None:intergenic |
| ATGGCTGTTGCTGAAAATGT+TGG | 0.578892 | 3_4:-68319486 | Msa0516790:CDS |
| TGTCGGATTGACAGGTGCAA+TGG | 0.579326 | 3_4:+68318048 | None:intergenic |
| AGCCATAATCACTTCTCTTG+AGG | 0.582137 | 3_4:+68319503 | None:intergenic |
| TCGCAATAACCGGCATAGCA+AGG | 0.583350 | 3_4:+68315383 | None:intergenic |
| CCATGATTATTTGTTAGCGA+CGG | 0.584715 | 3_4:+68319123 | None:intergenic |
| GTTGTTGATTGTCGGGTATG+CGG | 0.593806 | 3_4:-68318290 | Msa0516790:CDS |
| TAGTCACATTTCACAACCCA+AGG | 0.594675 | 3_4:-68319946 | Msa0516790:five_prime_UTR |
| AAAGCTGAATCCCATGGCTG+AGG | 0.595003 | 3_4:-68319157 | Msa0516790:CDS |
| GGGATTACCAGCATTCAACT+CGG | 0.596095 | 3_4:-68317457 | Msa0516790:CDS |
| ATCATCTGACTCAACTGAGG+TGG | 0.609851 | 3_4:-68319409 | Msa0516790:CDS |
| TTGGGACGTTCTTCTCAGGA+AGG | 0.612224 | 3_4:-68319915 | Msa0516790:five_prime_UTR |
| AAGTATCAACTAAACGCCAC+AGG | 0.617637 | 3_4:+68315704 | None:intergenic |
| ATTGCAGCTCTAAGCTGCAG+TGG | 0.625007 | 3_4:-68315983 | Msa0516790:CDS |
| TACGAGGAGAAGAACGAGCA+CGG | 0.626781 | 3_4:+68315817 | None:intergenic |
| CTAACGGCCAAACTAACCGT+AGG | 0.628743 | 3_4:-68319026 | Msa0516790:CDS |
| GTCTGTCTGGAACTATGCTG+GGG | 0.640656 | 3_4:-68318105 | Msa0516790:CDS |
| TGCATTTGTTGAGTTCGCAG+TGG | 0.641475 | 3_4:-68317432 | Msa0516790:intron |
| ATGAGAAATGGTGAGAATGG+AGG | 0.651521 | 3_4:-68319225 | Msa0516790:CDS |
| TAACGGCCAAACTAACCGTA+GGG | 0.656336 | 3_4:-68319025 | Msa0516790:intron |
| TTATCTAGGTCCATCGACTG+AGG | 0.678332 | 3_4:-68317487 | Msa0516790:intron |
| TATATGTTCCAAAGAACCTG+TGG | 0.697100 | 3_4:-68315720 | Msa0516790:three_prime_UTR |
| GTTGTCAAAGCTGAATCCCA+TGG | 0.699172 | 3_4:-68319163 | Msa0516790:CDS |
| CGTATCATCTGACTCAACTG+AGG | 0.701261 | 3_4:-68319412 | Msa0516790:CDS |
| AGGTGGAGAAATCGAAACCG+AGG | 0.703142 | 3_4:-68319392 | Msa0516790:CDS |
| TATACATGCAGAGAGTGCAA+GGG | 0.703869 | 3_4:-68318137 | Msa0516790:intron |
| GATTCAGTTCATGGACTACG+AGG | 0.724532 | 3_4:+68315801 | None:intergenic |
| GATCAGGATGTGAACAACAA+CGG | 0.735570 | 3_4:-68319366 | Msa0516790:CDS |
| TTGAGTCAGATGATACGACG+TGG | 0.773827 | 3_4:+68319418 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTTAATTAAAAATAT+TGG | + | chr3_4:68315382-68315401 | None:intergenic | 0.0% |
| !!! | TTATTTATTTATTTTTTCTG+GGG | - | chr3_4:68315618-68315637 | Msa0516790:three_prime_UTR | 10.0% |
| !!! | TAAAATATTTTTCATTGTTT+TGG | - | chr3_4:68317875-68317894 | Msa0516790:CDS | 10.0% |
| !! | ATGGAAATTAAATGAAAAAT+TGG | - | chr3_4:68315354-68315373 | Msa0516790:three_prime_UTR | 15.0% |
| !! | TGGAAATTAAATGAAAAATT+GGG | - | chr3_4:68315355-68315374 | Msa0516790:three_prime_UTR | 15.0% |
| !!! | TAAGAAGTATAAAATTGTTA+GGG | + | chr3_4:68316328-68316347 | None:intergenic | 15.0% |
| !!! | TTAAGAAGTATAAAATTGTT+AGG | + | chr3_4:68316329-68316348 | None:intergenic | 15.0% |
| !! | ACTAATTTAATCATATACAA+AGG | - | chr3_4:68316892-68316911 | Msa0516790:intron | 15.0% |
| !! | TGTTTATATAATCTATTCTA+AGG | + | chr3_4:68318508-68318527 | None:intergenic | 15.0% |
| !! | ATTTAGTAAACTTACTTTAA+TGG | - | chr3_4:68318841-68318860 | Msa0516790:CDS | 15.0% |
| !!! | ATATTTTAGCATTTTACTAA+GGG | + | chr3_4:68319248-68319267 | None:intergenic | 15.0% |
| !!! | TATATTTTAGCATTTTACTA+AGG | + | chr3_4:68319249-68319268 | None:intergenic | 15.0% |
| !!! | AAACAAACATGAAGATTTTA+AGG | + | chr3_4:68315666-68315685 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTATGATGTTTTG+TGG | - | chr3_4:68315765-68315784 | Msa0516790:three_prime_UTR | 20.0% |
| !!! | TTTTTCTTATGATGTTTTGT+GGG | - | chr3_4:68315766-68315785 | Msa0516790:three_prime_UTR | 20.0% |
| !!! | ATTTTTTGATACAGATTTGA+AGG | - | chr3_4:68315825-68315844 | Msa0516790:CDS | 20.0% |
| !!! | TTTTTTGATACAGATTTGAA+GGG | - | chr3_4:68315826-68315845 | Msa0516790:CDS | 20.0% |
| !! | AATCTGATATTAGAGAATAA+AGG | - | chr3_4:68315850-68315869 | Msa0516790:intron | 20.0% |
| !! | AATAATTATGCTAATGCTAA+CGG | - | chr3_4:68316347-68316366 | Msa0516790:intron | 20.0% |
| !!! | TAATGATTGTTGTTTTATGT+CGG | - | chr3_4:68316680-68316699 | Msa0516790:intron | 20.0% |
| !!! | ATTGTCATTTGTACTATTTA+GGG | - | chr3_4:68317014-68317033 | Msa0516790:intron | 20.0% |
| !! | CATGGAATATATCAATATAA+TGG | + | chr3_4:68317806-68317825 | None:intergenic | 20.0% |
| !! | CATTATATTGATATATTCCA+TGG | - | chr3_4:68317804-68317823 | Msa0516790:intron | 20.0% |
| !! | AAAAATAGGATGTAGTTATA+GGG | + | chr3_4:68318147-68318166 | None:intergenic | 20.0% |
| !! | TAAAAATAGGATGTAGTTAT+AGG | + | chr3_4:68318148-68318167 | None:intergenic | 20.0% |
| !! | TTATTGACAGAAGTAAAAAT+AGG | + | chr3_4:68318161-68318180 | None:intergenic | 20.0% |
| !!! | TCCTTGTTTATTTATGAATT+TGG | - | chr3_4:68318329-68318348 | Msa0516790:intron | 20.0% |
| !! | TCCAAATTCATAAATAAACA+AGG | + | chr3_4:68318333-68318352 | None:intergenic | 20.0% |
| !! | TAGTGAAGTTATTAATTCTA+AGG | - | chr3_4:68318691-68318710 | Msa0516790:intron | 20.0% |
| !!! | TGGTTTTGTTCTTAATTAAT+TGG | - | chr3_4:68319203-68319222 | Msa0516790:CDS | 20.0% |
| !!! | TATTTTAGCATTTTACTAAG+GGG | + | chr3_4:68319247-68319266 | None:intergenic | 20.0% |
| !! | TGCTAAAATATATGAAGTAT+TGG | - | chr3_4:68319257-68319276 | Msa0516790:CDS | 20.0% |
| ! | ATTGTGAAGAGAAATGAAAA+GGG | + | chr3_4:68315542-68315561 | None:intergenic | 25.0% |
| ! | TATTGTGAAGAGAAATGAAA+AGG | + | chr3_4:68315543-68315562 | None:intergenic | 25.0% |
| !!! | TTATTTTTTCTGGGGTTTTA+AGG | - | chr3_4:68315626-68315645 | Msa0516790:three_prime_UTR | 25.0% |
| ! | TTTGTTTGATCTTATGTCAT+TGG | - | chr3_4:68315679-68315698 | Msa0516790:three_prime_UTR | 25.0% |
| !!! | TGTTTTTTTTGTTTACTTCC+TGG | - | chr3_4:68315792-68315811 | Msa0516790:exon | 25.0% |
| ! | CAAAAAATTGTTATCAAACC+AGG | + | chr3_4:68315813-68315832 | None:intergenic | 25.0% |
| ! | AAAAAAACATCATAGCGTAT+CGG | + | chr3_4:68316765-68316784 | None:intergenic | 25.0% |
| ! | ACGCATAATTTACTATTGTT+TGG | + | chr3_4:68316919-68316938 | None:intergenic | 25.0% |
| ! | AACAATAGTAAATTATGCGT+CGG | - | chr3_4:68316919-68316938 | Msa0516790:intron | 25.0% |
| !!! | CAAATCATTTTAGTATTGCT+TGG | + | chr3_4:68316972-68316991 | None:intergenic | 25.0% |
| !! | GCAATACTAAAATGATTTGT+CGG | - | chr3_4:68316973-68316992 | Msa0516790:intron | 25.0% |
| ! | TAGTACAAATGACAATGTAA+CGG | + | chr3_4:68317010-68317029 | None:intergenic | 25.0% |
| !! | CATTGTCATTTGTACTATTT+AGG | - | chr3_4:68317013-68317032 | Msa0516790:intron | 25.0% |
| ! | GCATATGAACAACAAATATT+TGG | + | chr3_4:68317187-68317206 | None:intergenic | 25.0% |
| ! | AGGTAAATTATTATTCACTC+TGG | + | chr3_4:68317428-68317447 | None:intergenic | 25.0% |
| ! | ACAAACGAAAAAAAGAAAAG+AGG | + | chr3_4:68317448-68317467 | None:intergenic | 25.0% |
| ! | CACTTTCATTTAATCTTACT+TGG | - | chr3_4:68317570-68317589 | Msa0516790:intron | 25.0% |
| ! | TTTCATTTAATCTTACTTGG+AGG | - | chr3_4:68317573-68317592 | Msa0516790:intron | 25.0% |
| !!! | TAGTAGTTTTTAATGGATCT+TGG | - | chr3_4:68317730-68317749 | Msa0516790:intron | 25.0% |
| !!! | ATTGTTTTGGTGTATTATCT+AGG | - | chr3_4:68317888-68317907 | Msa0516790:CDS | 25.0% |
| ! | TTGAGCAAATAAAAGTAAGA+AGG | + | chr3_4:68318005-68318024 | None:intergenic | 25.0% |
| ! | ATAACTTCACAAAGCAATAT+AGG | + | chr3_4:68318058-68318077 | None:intergenic | 25.0% |
| !!! | TTTTCTCTTGATTGTTTTTC+AGG | + | chr3_4:68318228-68318247 | None:intergenic | 25.0% |
| !! | ATTTATTATGTTAGCTCTTG+TGG | - | chr3_4:68318253-68318272 | Msa0516790:CDS | 25.0% |
| !! | TTTATTATGTTAGCTCTTGT+GGG | - | chr3_4:68318254-68318273 | Msa0516790:CDS | 25.0% |
| !! | ATTTGCTGAAATTAGCTTAT+GGG | + | chr3_4:68318474-68318493 | None:intergenic | 25.0% |
| !!! | AATTTGCTGAAATTAGCTTA+TGG | + | chr3_4:68318475-68318494 | None:intergenic | 25.0% |
| ! | TACAATTGAAGAGTTGAATA+AGG | + | chr3_4:68318567-68318586 | None:intergenic | 25.0% |
| ! | AACTTCACTAATTCAAACTA+AGG | + | chr3_4:68318681-68318700 | None:intergenic | 25.0% |
| !!! | ATGTTTTGTTTGTTTAAGAG+AGG | + | chr3_4:68318823-68318842 | None:intergenic | 25.0% |
| !! | AAGAGAGAATTTGAAATTGA+CGG | + | chr3_4:68319026-68319045 | None:intergenic | 25.0% |
| !!! | TTTTTAGTTATCTTTGCAGT+TGG | - | chr3_4:68319183-68319202 | Msa0516790:CDS | 25.0% |
| !!! | ATTTTAGCATTTTACTAAGG+GGG | + | chr3_4:68319246-68319265 | None:intergenic | 25.0% |
| ! | AAACAGTTCATGACTAAAAA+AGG | + | chr3_4:68319903-68319922 | None:intergenic | 25.0% |
| ! | TTAGTCATGAACTGTTTATT+TGG | - | chr3_4:68319906-68319925 | Msa0516790:five_prime_UTR | 25.0% |
| !!! | AATTACCATTTTGGTGTTGA+TGG | + | chr3_4:68316058-68316077 | None:intergenic | 30.0% |
| ! | TGAAGCTGTAATTACCATTT+TGG | + | chr3_4:68316067-68316086 | None:intergenic | 30.0% |
| !! | AATGATGGATATGTGATGAA+TGG | - | chr3_4:68316140-68316159 | Msa0516790:intron | 30.0% |
| AACAAAATATCCATACCCTA+CGG | + | chr3_4:68316382-68316401 | None:intergenic | 30.0% | |
| ! | CTCTTTCATTATTTTCGTGT+TGG | - | chr3_4:68316407-68316426 | Msa0516790:intron | 30.0% |
| !! | TACAATGATGTGTTTTTCAG+AGG | - | chr3_4:68316466-68316485 | Msa0516790:intron | 30.0% |
| AGAAAAGAGAAGAGATGATT+AGG | - | chr3_4:68316544-68316563 | Msa0516790:intron | 30.0% | |
| CAGATCATATAGATTCATCA+TGG | + | chr3_4:68316848-68316867 | None:intergenic | 30.0% | |
| ATATGATCTGATATCATCGA+AGG | - | chr3_4:68316858-68316877 | Msa0516790:intron | 30.0% | |
| GGTAAACCATCATTAAGAAA+GGG | + | chr3_4:68317044-68317063 | None:intergenic | 30.0% | |
| TGGTAAACCATCATTAAGAA+AGG | + | chr3_4:68317045-68317064 | None:intergenic | 30.0% | |
| TAAACTCAATGAAGGCAAAT+CGG | + | chr3_4:68317143-68317162 | None:intergenic | 30.0% | |
| TTCATCTGTAAACTCAATGA+AGG | + | chr3_4:68317151-68317170 | None:intergenic | 30.0% | |
| TTCATTGAGTTTACAGATGA+AGG | - | chr3_4:68317150-68317169 | Msa0516790:intron | 30.0% | |
| ! | ATTGACAAGAAGGTAGTTTT+GGG | - | chr3_4:68317541-68317560 | Msa0516790:intron | 30.0% |
| TGATTGCTACAAATCAGATA+CGG | + | chr3_4:68317616-68317635 | None:intergenic | 30.0% | |
| ! | TATCTGATTTGTAGCAATCA+AGG | - | chr3_4:68317616-68317635 | Msa0516790:intron | 30.0% |
| ! | GAGAGGTTAGTAGTTTTTAA+TGG | - | chr3_4:68317723-68317742 | Msa0516790:intron | 30.0% |
| GCAAATAAAAGTAAGAAGGT+TGG | + | chr3_4:68318001-68318020 | None:intergenic | 30.0% | |
| !! | TACTTTTATTTGCTCAACTC+TGG | - | chr3_4:68318008-68318027 | Msa0516790:intron | 30.0% |
| ACAAATGATAACTACAAACC+CGG | + | chr3_4:68318102-68318121 | None:intergenic | 30.0% | |
| !!! | TGTTTTTCAGGACTTTTAGT+AGG | + | chr3_4:68318216-68318235 | None:intergenic | 30.0% |
| GCAGTGAAAATATGTTGTAA+TGG | - | chr3_4:68318377-68318396 | Msa0516790:intron | 30.0% | |
| GTGAAAATATGTTGTAATGG+TGG | - | chr3_4:68318380-68318399 | Msa0516790:intron | 30.0% | |
| TGAGCTTACAAATTTCAACT+TGG | - | chr3_4:68318730-68318749 | Msa0516790:intron | 30.0% | |
| !! | TTTTGTTTGTTTAAGAGAGG+AGG | + | chr3_4:68318820-68318839 | None:intergenic | 30.0% |
| !! | TGTTGCTTGCATATTCTTTT+GGG | - | chr3_4:68318911-68318930 | Msa0516790:intron | 30.0% |
| !! | GGATGGAAATTAAAAGCATT+GGG | + | chr3_4:68318949-68318968 | None:intergenic | 30.0% |
| ! | TTGCCATGTCTTTTCTTTTT+TGG | - | chr3_4:68319337-68319356 | Msa0516790:CDS | 30.0% |
| AACATCCAACCATAAAATTC+TGG | + | chr3_4:68319848-68319867 | None:intergenic | 30.0% | |
| ! | TTTTATGGTTGGATGTTATC+TGG | - | chr3_4:68319851-68319870 | Msa0516790:five_prime_UTR | 30.0% |
| ACTGCAATAACATGTTCATT+TGG | - | chr3_4:68320028-68320047 | Msa0516790:five_prime_UTR | 30.0% | |
| !! | ATTTCGCTGAACTGACTTTT+TGG | + | chr3_4:68315501-68315520 | None:intergenic | 35.0% |
| AAAAGTCAGTTCAGCGAAAT+CGG | - | chr3_4:68315501-68315520 | Msa0516790:three_prime_UTR | 35.0% | |
| !! | GAAATGAAAAGGGTGTTGTT+CGG | + | chr3_4:68315532-68315551 | None:intergenic | 35.0% |
| AATTAGTGAAAGAGAGAGAG+TGG | + | chr3_4:68315589-68315608 | None:intergenic | 35.0% | |
| TACCTCAAGAGAAGTGATTA+TGG | - | chr3_4:68315884-68315903 | Msa0516790:intron | 35.0% | |
| !! | GAAAATGTTGGTGCCAAAAT+CGG | - | chr3_4:68315915-68315934 | Msa0516790:intron | 35.0% |
| TTCAACCATCAACACCAAAA+TGG | - | chr3_4:68316050-68316069 | Msa0516790:intron | 35.0% | |
| AGCTTCAAGACTCATCAAAT+GGG | - | chr3_4:68316080-68316099 | Msa0516790:intron | 35.0% | |
| CAGTTTATGGTGAACAATGA+TGG | - | chr3_4:68316125-68316144 | Msa0516790:intron | 35.0% | |
| GTGATGAATGGTATGAGAAA+TGG | - | chr3_4:68316152-68316171 | Msa0516790:intron | 35.0% | |
| !!! | AGAGTTTTAAGCGTGAAATG+AGG | - | chr3_4:68316189-68316208 | Msa0516790:intron | 35.0% |
| !!! | GAGTTTTAAGCGTGAAATGA+GGG | - | chr3_4:68316190-68316209 | Msa0516790:intron | 35.0% |
| ! | CCATGATTATTTGTTAGCGA+CGG | + | chr3_4:68316269-68316288 | None:intergenic | 35.0% |
| !! | TGTGTTTTTCAGAGGAAGAA+TGG | - | chr3_4:68316474-68316493 | Msa0516790:intron | 35.0% |
| AAGAATGGCTACACTACTAA+TGG | - | chr3_4:68316489-68316508 | Msa0516790:intron | 35.0% | |
| AGCGAATCATAAAGTGGATA+TGG | - | chr3_4:68316521-68316540 | Msa0516790:intron | 35.0% | |
| AAAGAGAAGAGATGATTAGG+AGG | - | chr3_4:68316547-68316566 | Msa0516790:intron | 35.0% | |
| !! | GTTGTTTTATGTCGGAATCT+AGG | - | chr3_4:68316688-68316707 | Msa0516790:intron | 35.0% |
| GCATCTCTCTTTCTTAATTG+CGG | - | chr3_4:68316728-68316747 | Msa0516790:intron | 35.0% | |
| ! | GGTTTTCCCTTTCTTAATGA+TGG | - | chr3_4:68317035-68317054 | Msa0516790:intron | 35.0% |
| GCAAATCGGAGAATAGAATT+GGG | + | chr3_4:68317129-68317148 | None:intergenic | 35.0% | |
| ATTACCCTGGGTAAAAATGT+CGG | + | chr3_4:68317361-68317380 | None:intergenic | 35.0% | |
| !! | ACTAAGAAAAGCATTACCCT+GGG | + | chr3_4:68317373-68317392 | None:intergenic | 35.0% |
| !! | AACTAAGAAAAGCATTACCC+TGG | + | chr3_4:68317374-68317393 | None:intergenic | 35.0% |
| TGTTTCAGTCTGAAGATGAA+AGG | - | chr3_4:68317485-68317504 | Msa0516790:intron | 35.0% | |
| GTTTCAGTCTGAAGATGAAA+GGG | - | chr3_4:68317486-68317505 | Msa0516790:intron | 35.0% | |
| ! | CATTGACAAGAAGGTAGTTT+TGG | - | chr3_4:68317540-68317559 | Msa0516790:intron | 35.0% |
| CACTTCTTTGAATCTATCTG+TGG | - | chr3_4:68317701-68317720 | Msa0516790:CDS | 35.0% | |
| TGGCTTACAATGCTTATTGT+TGG | - | chr3_4:68317750-68317769 | Msa0516790:intron | 35.0% | |
| !! | AAACTCAAGCATTGAAACCA+TGG | + | chr3_4:68317824-68317843 | None:intergenic | 35.0% |
| ATAGGATGTAGTTATAGGGA+GGG | + | chr3_4:68318143-68318162 | None:intergenic | 35.0% | |
| AATAGGATGTAGTTATAGGG+AGG | + | chr3_4:68318144-68318163 | None:intergenic | 35.0% | |
| !! | TTTTCAGGACTTTTAGTAGG+CGG | + | chr3_4:68318213-68318232 | None:intergenic | 35.0% |
| CATGAAAAGCTAAGATGGAA+AGG | + | chr3_4:68318290-68318309 | None:intergenic | 35.0% | |
| !! | CTTTCCATCTTAGCTTTTCA+TGG | - | chr3_4:68318288-68318307 | Msa0516790:CDS | 35.0% |
| TTTGCCATGAAAAGCTAAGA+TGG | + | chr3_4:68318295-68318314 | None:intergenic | 35.0% | |
| AGTTATTAGTCAGCTATGCT+TGG | - | chr3_4:68318651-68318670 | Msa0516790:intron | 35.0% | |
| !!! | GTGTTGCTTGCATATTCTTT+TGG | - | chr3_4:68318910-68318929 | Msa0516790:intron | 35.0% |
| ! | GTTGCTTGCATATTCTTTTG+GGG | - | chr3_4:68318912-68318931 | Msa0516790:intron | 35.0% |
| ! | GGGATGGAAATTAAAAGCAT+TGG | + | chr3_4:68318950-68318969 | None:intergenic | 35.0% |
| AGTATAAGTAAAGCAGCTAC+AGG | + | chr3_4:68318988-68319007 | None:intergenic | 35.0% | |
| !!! | TAAAGGAGTTTTTTACCAGG+AGG | + | chr3_4:68319114-68319133 | None:intergenic | 35.0% |
| !!! | TGCTAAAGGAGTTTTTTACC+AGG | + | chr3_4:68319117-68319136 | None:intergenic | 35.0% |
| CAGCCAAAAAAGAAAAGACA+TGG | + | chr3_4:68319343-68319362 | None:intergenic | 35.0% | |
| !!! | CATGTCTTTTCTTTTTTGGC+TGG | - | chr3_4:68319341-68319360 | Msa0516790:CDS | 35.0% |
| TTTCTTTGCCTCATTCTTTC+AGG | - | chr3_4:68319372-68319391 | Msa0516790:CDS | 35.0% | |
| TCAACTGTCCTAAAAACTTC+AGG | - | chr3_4:68319479-68319498 | Msa0516790:CDS | 35.0% | |
| CAACTGTCCTAAAAACTTCA+GGG | - | chr3_4:68319480-68319499 | Msa0516790:CDS | 35.0% | |
| ! | AACAGTTCCCTGAAGTTTTT+AGG | + | chr3_4:68319490-68319509 | None:intergenic | 35.0% |
| ATCTTAACCACTCTTATGTC+TGG | - | chr3_4:68319518-68319537 | Msa0516790:five_prime_UTR | 35.0% | |
| TATATGTTCCAAAGAACCTG+TGG | - | chr3_4:68319669-68319688 | Msa0516790:intron | 35.0% | |
| ! | CTTGCATGTCCAGAATTTTA+TGG | - | chr3_4:68319836-68319855 | Msa0516790:five_prime_UTR | 35.0% |
| ! | CATGTCCAGAATTTTATGGT+TGG | - | chr3_4:68319840-68319859 | Msa0516790:five_prime_UTR | 35.0% |
| CAATAACATGTTCATTTGGC+TGG | - | chr3_4:68320032-68320051 | Msa0516790:five_prime_UTR | 35.0% | |
| TAGTCACATTTCACAACCCA+AGG | - | chr3_4:68315443-68315462 | Msa0516790:three_prime_UTR | 40.0% | |
| ACAACCCAAGGACATCAAAT+TGG | - | chr3_4:68315455-68315474 | Msa0516790:three_prime_UTR | 40.0% | |
| CAACCCAAGGACATCAAATT+GGG | - | chr3_4:68315456-68315475 | Msa0516790:three_prime_UTR | 40.0% | |
| AGCCATAATCACTTCTCTTG+AGG | + | chr3_4:68315889-68315908 | None:intergenic | 40.0% | |
| ATGGCTGTTGCTGAAAATGT+TGG | - | chr3_4:68315903-68315922 | Msa0516790:intron | 40.0% | |
| !! | CTGACTTGATGAACCGATTT+TGG | + | chr3_4:68315931-68315950 | None:intergenic | 40.0% |
| CGGTTCATCAAGTCAGAATT+TGG | - | chr3_4:68315935-68315954 | Msa0516790:intron | 40.0% | |
| ! | GTTGTTGTTCACATCCTGAT+CGG | + | chr3_4:68316024-68316043 | None:intergenic | 40.0% |
| GATCAGGATGTGAACAACAA+CGG | - | chr3_4:68316023-68316042 | Msa0516790:intron | 40.0% | |
| CAGCTTCAAGACTCATCAAA+TGG | - | chr3_4:68316079-68316098 | Msa0516790:intron | 40.0% | |
| TGTTCAGAACCAGCAGTTTA+TGG | - | chr3_4:68316112-68316131 | Msa0516790:intron | 40.0% | |
| CATTGTTCACCATAAACTGC+TGG | + | chr3_4:68316124-68316143 | None:intergenic | 40.0% | |
| GGTATGAGAAATGGTGAGAA+TGG | - | chr3_4:68316161-68316180 | Msa0516790:intron | 40.0% | |
| ATGAGAAATGGTGAGAATGG+AGG | - | chr3_4:68316164-68316183 | Msa0516790:intron | 40.0% | |
| TAAGCGTGAAATGAGGGATT+TGG | - | chr3_4:68316196-68316215 | Msa0516790:intron | 40.0% | |
| ! | TGATTATTTGTTAGCGACGG+AGG | + | chr3_4:68316266-68316285 | None:intergenic | 40.0% |
| CCGTCGCTAACAAATAATCA+TGG | - | chr3_4:68316266-68316285 | Msa0516790:intron | 40.0% | |
| TCTGATATTGATCAGCTGGT+AGG | - | chr3_4:68316582-68316601 | Msa0516790:intron | 40.0% | |
| GGCAAATCGGAGAATAGAAT+TGG | + | chr3_4:68317130-68317149 | None:intergenic | 40.0% | |
| ! | TTATACATGCAGAGAGTGCA+AGG | - | chr3_4:68317251-68317270 | Msa0516790:intron | 40.0% |
| ! | TATACATGCAGAGAGTGCAA+GGG | - | chr3_4:68317252-68317271 | Msa0516790:intron | 40.0% |
| GGTAAAAATGTCGGATTGAC+AGG | + | chr3_4:68317352-68317371 | None:intergenic | 40.0% | |
| ! | TCAATCCGACATTTTTACCC+AGG | - | chr3_4:68317353-68317372 | Msa0516790:intron | 40.0% |
| ! | CAATCCGACATTTTTACCCA+GGG | - | chr3_4:68317354-68317373 | Msa0516790:intron | 40.0% |
| CTGCACAAACATTGACAAGA+AGG | - | chr3_4:68317531-68317550 | Msa0516790:intron | 40.0% | |
| TCTTACTTGGAGGAAATGCT+TGG | - | chr3_4:68317583-68317602 | Msa0516790:intron | 40.0% | |
| CTTTGAATCTATCTGTGGAG+AGG | - | chr3_4:68317706-68317725 | Msa0516790:CDS | 40.0% | |
| !!! | AGTTTTTAGAGCTTGAGTCC+TGG | - | chr3_4:68319079-68319098 | Msa0516790:CDS | 40.0% |
| !! | ACAGCTTGGTTTGTGAGTTA+GGG | + | chr3_4:68319142-68319161 | None:intergenic | 40.0% |
| TGAAATCCAGCGAACCTTAT+AGG | + | chr3_4:68319451-68319470 | None:intergenic | 40.0% | |
| ! | AGGACAGTTGATTCAGTTCA+TGG | + | chr3_4:68319600-68319619 | None:intergenic | 40.0% |
| AAGTATCAACTAAACGCCAC+AGG | + | chr3_4:68319688-68319707 | None:intergenic | 40.0% | |
| TTGTTCTCTGTCTTGCACTA+TGG | - | chr3_4:68319708-68319727 | Msa0516790:intron | 40.0% | |
| ! | GGTATCTTTGTTTCCCATTG+CGG | - | chr3_4:68319729-68319748 | Msa0516790:intron | 40.0% |
| TTTGTTTCCCATTGCGGTAA+TGG | - | chr3_4:68319735-68319754 | Msa0516790:intron | 40.0% | |
| TTGTTTCCCATTGCGGTAAT+GGG | - | chr3_4:68319736-68319755 | Msa0516790:intron | 40.0% | |
| !! | CGTTTAGCTTGTAGAGTTGA+TGG | - | chr3_4:68319764-68319783 | Msa0516790:intron | 40.0% |
| GAAGCAGCATCTACTTCATA+TGG | + | chr3_4:68319983-68320002 | None:intergenic | 40.0% | |
| GTTATTGCAGTCGCAATAAC+CGG | + | chr3_4:68320019-68320038 | None:intergenic | 40.0% | |
| CGTCCCAATTTGATGTCCTT+GGG | + | chr3_4:68315462-68315481 | None:intergenic | 45.0% | |
| ACGTCCCAATTTGATGTCCT+TGG | + | chr3_4:68315463-68315482 | None:intergenic | 45.0% | |
| CAAATTGGGACGTTCTTCTC+AGG | - | chr3_4:68315470-68315489 | Msa0516790:three_prime_UTR | 45.0% | |
| TTGAGTCAGATGATACGACG+TGG | + | chr3_4:68315974-68315993 | None:intergenic | 45.0% | |
| CGTATCATCTGACTCAACTG+AGG | - | chr3_4:68315977-68315996 | Msa0516790:CDS | 45.0% | |
| ATCATCTGACTCAACTGAGG+TGG | - | chr3_4:68315980-68315999 | Msa0516790:CDS | 45.0% | |
| GTTGTCAAAGCTGAATCCCA+TGG | - | chr3_4:68316226-68316245 | Msa0516790:intron | 45.0% | |
| AATCATGGCTACTTAGCTGC+TGG | - | chr3_4:68316281-68316300 | Msa0516790:intron | 45.0% | |
| TAACGGCCAAACTAACCGTA+GGG | - | chr3_4:68316364-68316383 | Msa0516790:intron | 45.0% | |
| ! | TCCATACCCTACGGTTAGTT+TGG | + | chr3_4:68316373-68316392 | None:intergenic | 45.0% |
| GCGAAGAGCGAATCATAAAG+TGG | - | chr3_4:68316515-68316534 | Msa0516790:intron | 45.0% | |
| CGTGTCTGATATTGATCAGC+TGG | - | chr3_4:68316578-68316597 | Msa0516790:intron | 45.0% | |
| TCTCTTTCTTAATTGCGGCC+AGG | - | chr3_4:68316733-68316752 | Msa0516790:intron | 45.0% | |
| !! | ATAGCGTATCGGTTACTACC+TGG | + | chr3_4:68316754-68316773 | None:intergenic | 45.0% |
| ! | TACGAGTTGACACGGTAACA+TGG | + | chr3_4:68317065-68317084 | None:intergenic | 45.0% |
| ! | CCAGGAAATACGAGTTGACA+CGG | + | chr3_4:68317073-68317092 | None:intergenic | 45.0% |
| AACTCGTATTTCCTGGCTGT+AGG | - | chr3_4:68317077-68317096 | Msa0516790:intron | 45.0% | |
| ACAATCAACAACCTACAGCC+AGG | + | chr3_4:68317091-68317110 | None:intergenic | 45.0% | |
| ! | GGCTGTAGGTTGTTGATTGT+CGG | - | chr3_4:68317091-68317110 | Msa0516790:intron | 45.0% |
| ! | GCTGTAGGTTGTTGATTGTC+GGG | - | chr3_4:68317092-68317111 | Msa0516790:intron | 45.0% |
| ! | GTTGTTGATTGTCGGGTATG+CGG | - | chr3_4:68317099-68317118 | Msa0516790:intron | 45.0% |
| ! | AAGTCTGTCTGGAACTATGC+TGG | - | chr3_4:68317282-68317301 | Msa0516790:intron | 45.0% |
| ! | AGTCTGTCTGGAACTATGCT+GGG | - | chr3_4:68317283-68317302 | Msa0516790:intron | 45.0% |
| ! | TTATCTAGGTCCATCGACTG+AGG | - | chr3_4:68317902-68317921 | Msa0516790:intron | 45.0% |
| GGGATTACCAGCATTCAACT+CGG | - | chr3_4:68317932-68317951 | Msa0516790:intron | 45.0% | |
| ! | ATGCAATCCGAGTTGAATGC+TGG | + | chr3_4:68317942-68317961 | None:intergenic | 45.0% |
| ! | TGCATTTGTTGAGTTCGCAG+TGG | - | chr3_4:68317957-68317976 | Msa0516790:intron | 45.0% |
| CCGGCAGTAAACTAATCTCA+GGG | + | chr3_4:68318083-68318102 | None:intergenic | 45.0% | |
| !! | CCCTGAGATTAGTTTACTGC+CGG | - | chr3_4:68318080-68318099 | Msa0516790:CDS | 45.0% |
| !! | CCTGAGATTAGTTTACTGCC+GGG | - | chr3_4:68318081-68318100 | Msa0516790:CDS | 45.0% |
| GATGTAGTTATAGGGAGGGA+GGG | + | chr3_4:68318139-68318158 | None:intergenic | 45.0% | |
| ACAGGAGATGCGGAAAAAGT+GGG | + | chr3_4:68318970-68318989 | None:intergenic | 45.0% | |
| TACAGGAGATGCGGAAAAAG+TGG | + | chr3_4:68318971-68318990 | None:intergenic | 45.0% | |
| TAAAGCAGCTACAGGAGATG+CGG | + | chr3_4:68318980-68318999 | None:intergenic | 45.0% | |
| !!! | TTTTTTACCAGGAGGCAGGA+GGG | + | chr3_4:68319106-68319125 | None:intergenic | 45.0% |
| TGTGAGTTAGGGGATGCTAA+AGG | + | chr3_4:68319131-68319150 | None:intergenic | 45.0% | |
| !! | CAGCTTGGTTTGTGAGTTAG+GGG | + | chr3_4:68319141-68319160 | None:intergenic | 45.0% |
| !! | GACAGCTTGGTTTGTGAGTT+AGG | + | chr3_4:68319143-68319162 | None:intergenic | 45.0% |
| TTACTAAGGGGGAGAAGATC+AGG | + | chr3_4:68319235-68319254 | None:intergenic | 45.0% | |
| ACTCTCAGCCTGAAAGAATG+AGG | + | chr3_4:68319383-68319402 | None:intergenic | 45.0% | |
| ! | AAGCTGCAGTGGTGTGATTT+TGG | - | chr3_4:68319417-68319436 | Msa0516790:CDS | 45.0% |
| ! | AGCTGCAGTGGTGTGATTTT+GGG | - | chr3_4:68319418-68319437 | Msa0516790:CDS | 45.0% |
| ACTCTTATGTCTGGTGTGCA+GGG | - | chr3_4:68319527-68319546 | Msa0516790:five_prime_UTR | 45.0% | |
| ! | GATTCAGTTCATGGACTACG+AGG | + | chr3_4:68319591-68319610 | None:intergenic | 45.0% |
| AATCAACTGTCCTTGCTGCT+GGG | - | chr3_4:68319607-68319626 | Msa0516790:intron | 45.0% | |
| ACTAAACGCCACAGGTTCTT+TGG | + | chr3_4:68319680-68319699 | None:intergenic | 45.0% | |
| GAAGAACCCATTACCGCAAT+GGG | + | chr3_4:68319745-68319764 | None:intergenic | 45.0% | |
| !! | GTAGAGTTGATGGTACTTCG+AGG | - | chr3_4:68319774-68319793 | Msa0516790:intron | 45.0% |
| !!! | ATTTATTTATTTATTTTTTC+TGG | - | chr3_4:68315616-68315635 | Msa0516790:three_prime_UTR | 5.0% |
| !!! | TTTATTTATTTATTTTTTCT+GGG | - | chr3_4:68315617-68315636 | Msa0516790:three_prime_UTR | 5.0% |
| TTGGGACGTTCTTCTCAGGA+AGG | - | chr3_4:68315474-68315493 | Msa0516790:three_prime_UTR | 50.0% | |
| AGGTGGAGAAATCGAAACCG+AGG | - | chr3_4:68315997-68316016 | Msa0516790:CDS | 50.0% | |
| TTCACATCCTGATCGGTCCT+CGG | + | chr3_4:68316017-68316036 | None:intergenic | 50.0% | |
| AAAGCTGAATCCCATGGCTG+AGG | - | chr3_4:68316232-68316251 | Msa0516790:intron | 50.0% | |
| GGCACAAATTCCTCAGCCAT+GGG | + | chr3_4:68316245-68316264 | None:intergenic | 50.0% | |
| AGGCACAAATTCCTCAGCCA+TGG | + | chr3_4:68316246-68316265 | None:intergenic | 50.0% | |
| CTAACGGCCAAACTAACCGT+AGG | - | chr3_4:68316363-68316382 | Msa0516790:intron | 50.0% | |
| GCCAAACTAACCGTAGGGTA+TGG | - | chr3_4:68316369-68316388 | Msa0516790:intron | 50.0% | |
| CCGTGTCAACTCGTATTTCC+TGG | - | chr3_4:68317070-68317089 | Msa0516790:intron | 50.0% | |
| ! | GTCTGTCTGGAACTATGCTG+GGG | - | chr3_4:68317284-68317303 | Msa0516790:intron | 50.0% |
| TGGAAGGCAGCACTCTCAAT+GGG | + | chr3_4:68317315-68317334 | None:intergenic | 50.0% | |
| TTGGAAGGCAGCACTCTCAA+TGG | + | chr3_4:68317316-68317335 | None:intergenic | 50.0% | |
| !!! | GGTGCAATGGCAGTTTTGGA+AGG | + | chr3_4:68317331-68317350 | None:intergenic | 50.0% |
| ! | GACAGGTGCAATGGCAGTTT+TGG | + | chr3_4:68317335-68317354 | None:intergenic | 50.0% |
| TGTCGGATTGACAGGTGCAA+TGG | + | chr3_4:68317344-68317363 | None:intergenic | 50.0% | |
| ! | TCCATCGACTGAGGCTTCTT+GGG | - | chr3_4:68317911-68317930 | Msa0516790:intron | 50.0% |
| CCCGGCAGTAAACTAATCTC+AGG | + | chr3_4:68318084-68318103 | None:intergenic | 50.0% | |
| GGATGTAGTTATAGGGAGGG+AGG | + | chr3_4:68318140-68318159 | None:intergenic | 50.0% | |
| ! | AGGACTTTTAGTAGGCGGTG+TGG | + | chr3_4:68318208-68318227 | None:intergenic | 50.0% |
| TCACTGCCAACCAAGGTAAG+CGG | + | chr3_4:68318886-68318905 | None:intergenic | 50.0% | |
| CACAAGTTCACTGCCAACCA+AGG | + | chr3_4:68318893-68318912 | None:intergenic | 50.0% | |
| GAGATGCGGAAAAAGTGGGA+TGG | + | chr3_4:68318966-68318985 | None:intergenic | 50.0% | |
| !!! | GTTTTTTACCAGGAGGCAGG+AGG | + | chr3_4:68319107-68319126 | None:intergenic | 50.0% |
| !!! | GGAGTTTTTTACCAGGAGGC+AGG | + | chr3_4:68319110-68319129 | None:intergenic | 50.0% |
| TGAGTCTCAAGCAGACAGCT+TGG | + | chr3_4:68319156-68319175 | None:intergenic | 50.0% | |
| !! | ATTGCAGCTCTAAGCTGCAG+TGG | - | chr3_4:68319406-68319425 | Msa0516790:CDS | 50.0% |
| !! | TTTTGGGTGCGCTGCCTATA+AGG | - | chr3_4:68319434-68319453 | Msa0516790:CDS | 50.0% |
| CTGCACACCAGACATAAGAG+TGG | + | chr3_4:68319528-68319547 | None:intergenic | 50.0% | |
| CACTCTTATGTCTGGTGTGC+AGG | - | chr3_4:68319526-68319545 | Msa0516790:five_prime_UTR | 50.0% | |
| TACGAGGAGAAGAACGAGCA+CGG | + | chr3_4:68319575-68319594 | None:intergenic | 50.0% | |
| GAATCAACTGTCCTTGCTGC+TGG | - | chr3_4:68319606-68319625 | Msa0516790:intron | 50.0% | |
| ATCAACTGTCCTTGCTGCTG+GGG | - | chr3_4:68319608-68319627 | Msa0516790:intron | 50.0% | |
| CGAAGAACCCATTACCGCAA+TGG | + | chr3_4:68319746-68319765 | None:intergenic | 50.0% | |
| ! | TGCTTCTCACCTTGCTATGC+CGG | - | chr3_4:68319997-68320016 | Msa0516790:five_prime_UTR | 50.0% |
| TCGCAATAACCGGCATAGCA+AGG | + | chr3_4:68320009-68320028 | None:intergenic | 50.0% | |
| ATCGAAACCGAGGACCGATC+AGG | - | chr3_4:68316007-68316026 | Msa0516790:intron | 55.0% | |
| CTAGGTTACCGAAGAGCAGC+TGG | - | chr3_4:68316706-68316725 | Msa0516790:intron | 55.0% | |
| GAGAGATGCCAGCTGCTCTT+CGG | + | chr3_4:68316717-68316736 | None:intergenic | 55.0% | |
| AGGGCTGCTGTAAGTCTGTC+TGG | - | chr3_4:68317271-68317290 | Msa0516790:intron | 55.0% | |
| ! | GTCCATCGACTGAGGCTTCT+TGG | - | chr3_4:68317910-68317929 | Msa0516790:intron | 55.0% |
| ! | CCATCGACTGAGGCTTCTTG+GGG | - | chr3_4:68317912-68317931 | Msa0516790:intron | 55.0% |
| ! | CAACCTTCTGCCGCTTACCT+TGG | - | chr3_4:68318873-68318892 | Msa0516790:CDS | 55.0% |
| CAACCAAGGTAAGCGGCAGA+AGG | + | chr3_4:68318879-68318898 | None:intergenic | 55.0% | |
| ! | CTTCTGCCGCTTACCTTGGT+TGG | - | chr3_4:68318877-68318896 | Msa0516790:CDS | 55.0% |
| !! | GCACGGACTGGTGTCTTTGA+CGG | + | chr3_4:68319558-68319577 | None:intergenic | 55.0% |
| TTAGCTGCTGGACCTGCTGC+TGG | - | chr3_4:68316293-68316312 | Msa0516790:intron | 60.0% | |
| TAGCTGCTGGACCTGCTGCT+GGG | - | chr3_4:68316294-68316313 | Msa0516790:intron | 60.0% | |
| GGGTAACCAAACCCAGCAGC+AGG | + | chr3_4:68316308-68316327 | None:intergenic | 60.0% | |
| CCCCAAGAAGCCTCAGTCGA+TGG | + | chr3_4:68317915-68317934 | None:intergenic | 60.0% | |
| GCGCTGCCTATAAGGTTCGC+TGG | - | chr3_4:68319442-68319461 | Msa0516790:CDS | 60.0% | |
| GGAGAAGAACGAGCACGGAC+TGG | + | chr3_4:68319570-68319589 | None:intergenic | 60.0% | |
| GCAGTCAAACCCCAGCAGCA+AGG | + | chr3_4:68319620-68319639 | None:intergenic | 60.0% | |
| GCTGGACCTGCTGCTGGGTT+TGG | - | chr3_4:68316299-68316318 | Msa0516790:intron | 65.0% | |
| TCCTGGACCCTCCTGCCTCC+TGG | - | chr3_4:68319096-68319115 | Msa0516790:CDS | 70.0% | |
| ACCAGGAGGCAGGAGGGTCC+AGG | + | chr3_4:68319100-68319119 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 68315342 | 68320069 | 68315342 | ID=Msa0516790;Name=Msa0516790 |
| chr3_4 | mRNA | 68315342 | 68320069 | 68315342 | ID=Msa0516790-mRNA-1;Parent=Msa0516790;Name=Msa0516790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=298|1|1|1|0.9|0.81|11|467|373 |
| chr3_4 | exon | 68315342 | 68315863 | 68315342 | ID=Msa0516790-mRNA-1:exon:17989;Parent=Msa0516790-mRNA-1 |
| chr3_4 | exon | 68315956 | 68316017 | 68315956 | ID=Msa0516790-mRNA-1:exon:17988;Parent=Msa0516790-mRNA-1 |
| chr3_4 | exon | 68317433 | 68317501 | 68317433 | ID=Msa0516790-mRNA-1:exon:17987;Parent=Msa0516790-mRNA-1 |
| chr3_4 | exon | 68317684 | 68317731 | 68317684 | ID=Msa0516790-mRNA-1:exon:17986;Parent=Msa0516790-mRNA-1 |
| chr3_4 | exon | 68317859 | 68317918 | 68317859 | ID=Msa0516790-mRNA-1:exon:17985;Parent=Msa0516790-mRNA-1 |
| chr3_4 | exon | 68318036 | 68318148 | 68318036 | ID=Msa0516790-mRNA-1:exon:17984;Parent=Msa0516790-mRNA-1 |
| chr3_4 | exon | 68318240 | 68318312 | 68318240 | ID=Msa0516790-mRNA-1:exon:17983;Parent=Msa0516790-mRNA-1 |
| chr3_4 | exon | 68318657 | 68318701 | 68318657 | ID=Msa0516790-mRNA-1:exon:17982;Parent=Msa0516790-mRNA-1 |
| chr3_4 | exon | 68318812 | 68318925 | 68318812 | ID=Msa0516790-mRNA-1:exon:17981;Parent=Msa0516790-mRNA-1 |
| chr3_4 | exon | 68319026 | 68319572 | 68319026 | ID=Msa0516790-mRNA-1:exon:17980;Parent=Msa0516790-mRNA-1 |
| chr3_4 | exon | 68319836 | 68320069 | 68319836 | ID=Msa0516790-mRNA-1:exon:17979;Parent=Msa0516790-mRNA-1 |
| chr3_4 | five_prime_UTR | 68319836 | 68320069 | 68319836 | ID=Msa0516790-mRNA-1:five_prime_utr;Parent=Msa0516790-mRNA-1 |
| chr3_4 | five_prime_UTR | 68319509 | 68319572 | 68319509 | ID=Msa0516790-mRNA-1:five_prime_utr;Parent=Msa0516790-mRNA-1 |
| chr3_4 | CDS | 68319026 | 68319508 | 68319026 | ID=Msa0516790-mRNA-1:cds;Parent=Msa0516790-mRNA-1 |
| chr3_4 | CDS | 68318812 | 68318925 | 68318812 | ID=Msa0516790-mRNA-1:cds;Parent=Msa0516790-mRNA-1 |
| chr3_4 | CDS | 68318657 | 68318701 | 68318657 | ID=Msa0516790-mRNA-1:cds;Parent=Msa0516790-mRNA-1 |
| chr3_4 | CDS | 68318240 | 68318312 | 68318240 | ID=Msa0516790-mRNA-1:cds;Parent=Msa0516790-mRNA-1 |
| chr3_4 | CDS | 68318036 | 68318148 | 68318036 | ID=Msa0516790-mRNA-1:cds;Parent=Msa0516790-mRNA-1 |
| chr3_4 | CDS | 68317859 | 68317918 | 68317859 | ID=Msa0516790-mRNA-1:cds;Parent=Msa0516790-mRNA-1 |
| chr3_4 | CDS | 68317684 | 68317731 | 68317684 | ID=Msa0516790-mRNA-1:cds;Parent=Msa0516790-mRNA-1 |
| chr3_4 | CDS | 68317433 | 68317501 | 68317433 | ID=Msa0516790-mRNA-1:cds;Parent=Msa0516790-mRNA-1 |
| chr3_4 | CDS | 68315956 | 68316017 | 68315956 | ID=Msa0516790-mRNA-1:cds;Parent=Msa0516790-mRNA-1 |
| chr3_4 | CDS | 68315809 | 68315863 | 68315809 | ID=Msa0516790-mRNA-1:cds;Parent=Msa0516790-mRNA-1 |
| chr3_4 | three_prime_UTR | 68315342 | 68315808 | 68315342 | ID=Msa0516790-mRNA-1:three_prime_utr;Parent=Msa0516790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
