Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428610 | XP_003602789.1 | 96.899 | 387 | 11 | 1 | 1 | 386 | 1 | 387 | 0.0 | 772 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428610 | sp|Q9SJE2|FATB_ARATH | 55.872 | 281 | 116 | 3 | 102 | 382 | 130 | 402 | 8.74e-107 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428610 | G7J3D9 | 96.899 | 387 | 11 | 1 | 1 | 386 | 1 | 387 | 0.0 | 772 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0428610 | Msa0474970 | 0.843372 | 1.459368e-58 | -8.615850e-47 |
| Msa0307740 | Msa0428610 | 0.807552 | 4.781286e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428610 | MtrunA17_Chr3g0132041 | 96.899 | 387 | 11 | 1 | 1 | 386 | 1 | 387 | 0.0 | 772 |
| Msa0428610 | MtrunA17_Chr2g0306391 | 56.228 | 281 | 114 | 4 | 102 | 382 | 128 | 399 | 5.86e-107 | 320 |
| Msa0428610 | MtrunA17_Chr4g0062811 | 52.313 | 281 | 126 | 3 | 102 | 382 | 126 | 398 | 5.29e-103 | 310 |
| Msa0428610 | MtrunA17_Chr7g0235761 | 39.423 | 312 | 171 | 5 | 88 | 382 | 56 | 366 | 1.09e-76 | 241 |
| Msa0428610 | MtrunA17_Chr1g0208941 | 38.736 | 364 | 177 | 10 | 53 | 382 | 12 | 363 | 1.47e-73 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428610 | AT1G08510.1 | 55.872 | 281 | 116 | 3 | 102 | 382 | 130 | 402 | 8.88e-108 | 323 |
| Msa0428610 | AT3G25110.1 | 41.608 | 286 | 161 | 3 | 102 | 382 | 75 | 359 | 2.51e-77 | 243 |
| Msa0428610 | AT4G13050.1 | 40.339 | 295 | 164 | 5 | 102 | 385 | 74 | 367 | 5.74e-76 | 240 |
Find 67 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTGATTGAATTATTAT+TGG | 0.200403 | 3_2:-79573140 | None:intergenic |
| CATAAAGTGGACACAATTAA+TGG | 0.213280 | 3_2:+79570787 | Msa0428610:CDS |
| GTTATTAGGTCCTATGAAAT+TGG | 0.286137 | 3_2:+79570937 | Msa0428610:CDS |
| GCAATCTTGTGAAGGTAAAA+AGG | 0.290395 | 3_2:-79571737 | None:intergenic |
| CTAAATCATGTTACAAGCTC+TGG | 0.322289 | 3_2:+79571235 | Msa0428610:CDS |
| CAAGCTTGACATTAGAGTTT+AGG | 0.339075 | 3_2:+79573050 | Msa0428610:CDS |
| TGAGCCTAAGGAAACTCATT+TGG | 0.347394 | 3_2:+79571293 | Msa0428610:CDS |
| GATGTTGCTCTTGTTACAAA+TGG | 0.353240 | 3_2:+79570874 | Msa0428610:CDS |
| ACATTAGCTTACAAGGGAAT+TGG | 0.354573 | 3_2:+79570608 | Msa0428610:CDS |
| GGGATAGGAGGAGATGGATT+TGG | 0.362524 | 3_2:+79571256 | Msa0428610:CDS |
| TCCATGGTAGCAGTTCTATC+TGG | 0.363190 | 3_2:-79570961 | None:intergenic |
| TTGAAGGAAGGTTTGTGTTT+AGG | 0.363251 | 3_2:+79570905 | Msa0428610:CDS |
| TCTATCTGGACCAATTTCAT+AGG | 0.414482 | 3_2:-79570947 | None:intergenic |
| GTGATTACAAATTGTAATCA+TGG | 0.416314 | 3_2:+79570754 | Msa0428610:CDS |
| GATCAACACAAAGAAGGCTT+TGG | 0.438422 | 3_2:+79570660 | Msa0428610:CDS |
| AAGAAATTGAAATTGATACT+TGG | 0.442643 | 3_2:+79571458 | Msa0428610:CDS |
| GAGCCTAAGGAAACTCATTT+GGG | 0.450636 | 3_2:+79571294 | Msa0428610:CDS |
| TGCCTTAGTTATGATCTCCT+TGG | 0.455238 | 3_2:-79571539 | None:intergenic |
| TCACCAATCACTCTTTCTGT+TGG | 0.465994 | 3_2:-79573115 | None:intergenic |
| ATTAATGGAACAAAGGTGAA+TGG | 0.467763 | 3_2:+79570802 | Msa0428610:CDS |
| ATCAGCAACATTAGCTTACA+AGG | 0.469830 | 3_2:+79570601 | Msa0428610:CDS |
| AGAAATTGAAATTGATACTT+GGG | 0.473173 | 3_2:+79571459 | Msa0428610:CDS |
| CAACCCAAATGAGTTTCCTT+AGG | 0.476925 | 3_2:-79571297 | None:intergenic |
| ATGGGAGATTTGTTGAAGGA+AGG | 0.479142 | 3_2:+79570893 | Msa0428610:CDS |
| AGATGTGTGTATTGCTGATC+GGG | 0.482567 | 3_2:-79573166 | None:intergenic |
| TTTCCTTAGGCTCATCTCGC+GGG | 0.490176 | 3_2:-79571284 | None:intergenic |
| GAATGTGAGCAATGCAAAGA+AGG | 0.493810 | 3_2:+79570630 | Msa0428610:CDS |
| GTGGATGCAGCAGGAAAGAA+TGG | 0.503767 | 3_2:+79571481 | Msa0428610:CDS |
| ATGTTGCTCTTGTTACAAAT+GGG | 0.508572 | 3_2:+79570875 | Msa0428610:CDS |
| GATACTTGGGTGGATGCAGC+AGG | 0.512312 | 3_2:+79571472 | Msa0428610:CDS |
| TGTCCAACAGAAAGAGTGAT+TGG | 0.513252 | 3_2:+79573112 | Msa0428610:CDS |
| TGAGAGAATACAATCTGGTT+TGG | 0.514880 | 3_2:+79571817 | Msa0428610:CDS |
| TCTTTCTGTTGGACATGTCA+AGG | 0.515470 | 3_2:-79573104 | None:intergenic |
| AGAATGGAATGCGAAGAGAT+TGG | 0.516352 | 3_2:+79571497 | Msa0428610:CDS |
| TCCAGATAGAACTGCTACCA+TGG | 0.517690 | 3_2:+79570960 | Msa0428610:CDS |
| CAACACAAAGAAGGCTTTGG+AGG | 0.518895 | 3_2:+79570663 | Msa0428610:CDS |
| ATTTCACATTGTTCACATGC+TGG | 0.522323 | 3_2:-79572796 | None:intergenic |
| ATGAAAATCTTCGTTTGTTG+TGG | 0.528344 | 3_2:-79570729 | None:intergenic |
| AAGTACAGAGATATAACAAA+TGG | 0.530589 | 3_2:+79571338 | Msa0428610:CDS |
| TACCAAGGAGATCATAACTA+AGG | 0.534432 | 3_2:+79571537 | Msa0428610:CDS |
| TAAATCATGTTACAAGCTCT+GGG | 0.534439 | 3_2:+79571236 | Msa0428610:CDS |
| AGCTCTGGGATAGGAGGAGA+TGG | 0.547009 | 3_2:+79571250 | Msa0428610:CDS |
| CATGTTACAAGCTCTGGGAT+AGG | 0.551503 | 3_2:+79571241 | Msa0428610:CDS |
| GTTTCCTTAGGCTCATCTCG+CGG | 0.551859 | 3_2:-79571285 | None:intergenic |
| TTGTTCGAGCTAGATCTGAA+TGG | 0.554018 | 3_2:+79573218 | Msa0428610:CDS |
| GAATGGTTTACTAGTGGCAG+AGG | 0.556582 | 3_2:+79570819 | Msa0428610:CDS |
| AAATATGATCAACACAAAGA+AGG | 0.557480 | 3_2:+79570654 | Msa0428610:CDS |
| GTGAACAATGTGAAATACAT+TGG | 0.558503 | 3_2:+79572803 | Msa0428610:CDS |
| AAAATTCATGAGTGTCTCCA+TGG | 0.562904 | 3_2:-79570977 | None:intergenic |
| GTTACAAGCTCTGGGATAGG+AGG | 0.564203 | 3_2:+79571244 | Msa0428610:CDS |
| ACAAATGGGAGATTTGTTGA+AGG | 0.566686 | 3_2:+79570889 | Msa0428610:CDS |
| ACAATGTGAAATACATTGGA+TGG | 0.571892 | 3_2:+79572807 | Msa0428610:CDS |
| AATTGAAATTGATACTTGGG+TGG | 0.581420 | 3_2:+79571462 | Msa0428610:CDS |
| CAGATGTGTGTATTGCTGAT+CGG | 0.582381 | 3_2:-79573167 | None:intergenic |
| CTACCCGCGAGATGAGCCTA+AGG | 0.586466 | 3_2:+79571281 | Msa0428610:CDS |
| ACTGCTGAGAGAATACAATC+TGG | 0.588100 | 3_2:+79571812 | Msa0428610:CDS |
| ACATCCATGTCATTCCACCT+TGG | 0.618207 | 3_2:-79572770 | None:intergenic |
| GGACACAATTAATGGAACAA+AGG | 0.619362 | 3_2:+79570795 | Msa0428610:CDS |
| TAGCTACTGCAATCTTGTGA+AGG | 0.624182 | 3_2:-79571745 | None:intergenic |
| AAAGGTGAATGGTTTACTAG+TGG | 0.638305 | 3_2:+79570813 | Msa0428610:CDS |
| TCTATGTATTACAGCCAAGG+TGG | 0.638940 | 3_2:+79572756 | Msa0428610:intron |
| ATGTACACAATCAAATACGT+TGG | 0.641412 | 3_2:+79573078 | Msa0428610:CDS |
| ACAGCCAAGGTGGAATGACA+TGG | 0.650706 | 3_2:+79572766 | Msa0428610:intron |
| AGATCATAACTAAGGCAACA+AGG | 0.652831 | 3_2:+79571545 | Msa0428610:CDS |
| TTGTCTTTGATTCAGCACAT+GGG | 0.654833 | 3_2:+79571649 | Msa0428610:intron |
| AATCAGAGATCGTTGTACCA+AGG | 0.681451 | 3_2:+79571522 | Msa0428610:CDS |
| TCAGCAACATTAGCTTACAA+GGG | 0.699612 | 3_2:+79570602 | Msa0428610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTATTAACATATTATT+TGG | - | chr3_2:79571627-79571646 | None:intergenic | 10.0% |
| !!! | AGAAATGGAAAATATTTTAT+AGG | + | chr3_2:79571204-79571223 | Msa0428610:intron | 15.0% |
| !!! | TCTATTGATTGAATTATTAT+TGG | - | chr3_2:79573143-79573162 | None:intergenic | 15.0% |
| !!! | TTTTCATTTAGCAATTTTCT+AGG | - | chr3_2:79570847-79570866 | None:intergenic | 20.0% |
| !!! | TTTATTTTATTTTTTCGAGC+CGG | + | chr3_2:79571142-79571161 | Msa0428610:intron | 20.0% |
| !! | CAATTATGTATAATTATGCA+AGG | - | chr3_2:79571396-79571415 | None:intergenic | 20.0% |
| !! | AAGAAATTGAAATTGATACT+TGG | + | chr3_2:79571458-79571477 | Msa0428610:CDS | 20.0% |
| !! | AGAAATTGAAATTGATACTT+GGG | + | chr3_2:79571459-79571478 | Msa0428610:CDS | 20.0% |
| !! | CCTTAATAACATAATGAAAA+TGG | - | chr3_2:79572165-79572184 | None:intergenic | 20.0% |
| !!! | CCATTTTCATTATGTTATTA+AGG | + | chr3_2:79572162-79572181 | Msa0428610:intron | 20.0% |
| !!! | GTATCAAATGTGTTATTTAA+GGG | - | chr3_2:79572246-79572265 | None:intergenic | 20.0% |
| !!! | TGTATCAAATGTGTTATTTA+AGG | - | chr3_2:79572247-79572266 | None:intergenic | 20.0% |
| !!! | TAATCTTCTAGTACTTTTAT+TGG | - | chr3_2:79573022-79573041 | None:intergenic | 20.0% |
| ! | AAATATGATCAACACAAAGA+AGG | + | chr3_2:79570654-79570673 | Msa0428610:CDS | 25.0% |
| ! | GTGATTACAAATTGTAATCA+TGG | + | chr3_2:79570754-79570773 | Msa0428610:CDS | 25.0% |
| !!! | TTAGGCAGATTTTTGTTATT+AGG | + | chr3_2:79570923-79570942 | Msa0428610:CDS | 25.0% |
| ! | AAGTACAGAGATATAACAAA+TGG | + | chr3_2:79571338-79571357 | Msa0428610:CDS | 25.0% |
| ! | ATGTATAATTATGCAAGGTA+GGG | - | chr3_2:79571391-79571410 | None:intergenic | 25.0% |
| ! | TATGTATAATTATGCAAGGT+AGG | - | chr3_2:79571392-79571411 | None:intergenic | 25.0% |
| ! | TTGAAAAATAAACTTGAACC+AGG | - | chr3_2:79571861-79571880 | None:intergenic | 25.0% |
| ! | TTGATTGTTACACATAATCA+CGG | + | chr3_2:79571945-79571964 | Msa0428610:intron | 25.0% |
| !!! | TGAAAAGTAAAACTGATTTG+AGG | + | chr3_2:79572311-79572330 | Msa0428610:intron | 25.0% |
| !!! | ATCTCTTTAGTTTTTTGTTC+AGG | - | chr3_2:79572677-79572696 | None:intergenic | 25.0% |
| ! | ATGAAAATCTTCGTTTGTTG+TGG | - | chr3_2:79570732-79570751 | None:intergenic | 30.0% |
| ! | CAACAAACGAAGATTTTCAT+TGG | + | chr3_2:79570732-79570751 | Msa0428610:CDS | 30.0% |
| ! | TGGTAGTACTTTTCATAAAG+TGG | + | chr3_2:79570774-79570793 | Msa0428610:CDS | 30.0% |
| CATAAAGTGGACACAATTAA+TGG | + | chr3_2:79570787-79570806 | Msa0428610:CDS | 30.0% | |
| ATTAATGGAACAAAGGTGAA+TGG | + | chr3_2:79570802-79570821 | Msa0428610:CDS | 30.0% | |
| ATGTTGCTCTTGTTACAAAT+GGG | + | chr3_2:79570875-79570894 | Msa0428610:CDS | 30.0% | |
| GTTATTAGGTCCTATGAAAT+TGG | + | chr3_2:79570937-79570956 | Msa0428610:CDS | 30.0% | |
| CAAGTTTCATGTTATACTTG+TGG | - | chr3_2:79571035-79571054 | None:intergenic | 30.0% | |
| AACACAACTATTGATCATGT+GGG | - | chr3_2:79571098-79571117 | None:intergenic | 30.0% | |
| GTTAGTTAGAACAACAAATC+CGG | - | chr3_2:79571164-79571183 | None:intergenic | 30.0% | |
| GTTCTAACTAACATAAAGCA+TGG | + | chr3_2:79571172-79571191 | Msa0428610:intron | 30.0% | |
| TAAATCATGTTACAAGCTCT+GGG | + | chr3_2:79571236-79571255 | Msa0428610:CDS | 30.0% | |
| GCACAATGATAAATTTGACA+GGG | + | chr3_2:79571432-79571451 | Msa0428610:intron | 30.0% | |
| CACAATGATAAATTTGACAG+GGG | + | chr3_2:79571433-79571452 | Msa0428610:intron | 30.0% | |
| AATTGAAATTGATACTTGGG+TGG | + | chr3_2:79571462-79571481 | Msa0428610:CDS | 30.0% | |
| CTGTAAGTTTATTTCATACC+TGG | + | chr3_2:79571840-79571859 | Msa0428610:intron | 30.0% | |
| AAAATTAGGAAGCGACTAAT+CGG | - | chr3_2:79571903-79571922 | None:intergenic | 30.0% | |
| ACAATCAAGTTTCATAGAAG+TGG | - | chr3_2:79571933-79571952 | None:intergenic | 30.0% | |
| GAACAATTGTGTTGTACTTT+CGG | + | chr3_2:79572034-79572053 | Msa0428610:intron | 30.0% | |
| ! | TTTAAAGTGAGTCATTTCGA+TGG | - | chr3_2:79572139-79572158 | None:intergenic | 30.0% |
| !! | AAAGTAAAACTGATTTGAGG+TGG | + | chr3_2:79572314-79572333 | Msa0428610:intron | 30.0% |
| GGATGAGATGTTTAACATAA+TGG | + | chr3_2:79572450-79572469 | Msa0428610:intron | 30.0% | |
| TCAACATAAGATGTTGATCT+GGG | - | chr3_2:79572569-79572588 | None:intergenic | 30.0% | |
| ATCAACATAAGATGTTGATC+TGG | - | chr3_2:79572570-79572589 | None:intergenic | 30.0% | |
| !! | ATTATGTGCTGATTGATTGT+TGG | + | chr3_2:79572588-79572607 | Msa0428610:intron | 30.0% |
| GTGAACAATGTGAAATACAT+TGG | + | chr3_2:79572803-79572822 | Msa0428610:CDS | 30.0% | |
| ACAATGTGAAATACATTGGA+TGG | + | chr3_2:79572807-79572826 | Msa0428610:CDS | 30.0% | |
| !! | ATACATTGGATGGATTTTAG+AGG | + | chr3_2:79572817-79572836 | Msa0428610:CDS | 30.0% |
| ATGTACACAATCAAATACGT+TGG | + | chr3_2:79573078-79573097 | Msa0428610:CDS | 30.0% | |
| ! | ATCAGCAACATTAGCTTACA+AGG | + | chr3_2:79570601-79570620 | Msa0428610:CDS | 35.0% |
| ! | TCAGCAACATTAGCTTACAA+GGG | + | chr3_2:79570602-79570621 | Msa0428610:CDS | 35.0% |
| ! | ACATTAGCTTACAAGGGAAT+TGG | + | chr3_2:79570608-79570627 | Msa0428610:CDS | 35.0% |
| GGACACAATTAATGGAACAA+AGG | + | chr3_2:79570795-79570814 | Msa0428610:CDS | 35.0% | |
| AAAGGTGAATGGTTTACTAG+TGG | + | chr3_2:79570813-79570832 | Msa0428610:CDS | 35.0% | |
| GATGTTGCTCTTGTTACAAA+TGG | + | chr3_2:79570874-79570893 | Msa0428610:CDS | 35.0% | |
| !! | ACAAATGGGAGATTTGTTGA+AGG | + | chr3_2:79570889-79570908 | Msa0428610:CDS | 35.0% |
| TTGAAGGAAGGTTTGTGTTT+AGG | + | chr3_2:79570905-79570924 | Msa0428610:CDS | 35.0% | |
| TCTATCTGGACCAATTTCAT+AGG | - | chr3_2:79570950-79570969 | None:intergenic | 35.0% | |
| AAAATTCATGAGTGTCTCCA+TGG | - | chr3_2:79570980-79570999 | None:intergenic | 35.0% | |
| ! | GACACTCATGAATTTTCTTC+AGG | + | chr3_2:79570984-79571003 | Msa0428610:CDS | 35.0% |
| GAACACAACTATTGATCATG+TGG | - | chr3_2:79571099-79571118 | None:intergenic | 35.0% | |
| GCATGGATGAACTAAAGAAA+TGG | + | chr3_2:79571189-79571208 | Msa0428610:intron | 35.0% | |
| CTAAATCATGTTACAAGCTC+TGG | + | chr3_2:79571235-79571254 | Msa0428610:CDS | 35.0% | |
| TACATCCATAAGATGCTTCT+AGG | + | chr3_2:79571365-79571384 | Msa0428610:intron | 35.0% | |
| CGCACAATGATAAATTTGAC+AGG | + | chr3_2:79571431-79571450 | Msa0428610:intron | 35.0% | |
| TACCAAGGAGATCATAACTA+AGG | + | chr3_2:79571537-79571556 | Msa0428610:CDS | 35.0% | |
| AGATCATAACTAAGGCAACA+AGG | + | chr3_2:79571545-79571564 | Msa0428610:CDS | 35.0% | |
| TTTGTCTTTGATTCAGCACA+TGG | + | chr3_2:79571648-79571667 | Msa0428610:intron | 35.0% | |
| TTGTCTTTGATTCAGCACAT+GGG | + | chr3_2:79571649-79571668 | Msa0428610:intron | 35.0% | |
| ! | AGCTCTTTTCTAACTTCTTC+AGG | - | chr3_2:79571713-79571732 | None:intergenic | 35.0% |
| GCAATCTTGTGAAGGTAAAA+AGG | - | chr3_2:79571740-79571759 | None:intergenic | 35.0% | |
| TGAGAGAATACAATCTGGTT+TGG | + | chr3_2:79571817-79571836 | Msa0428610:CDS | 35.0% | |
| GAAGTGGAGAAAGCAAAATT+AGG | - | chr3_2:79571917-79571936 | None:intergenic | 35.0% | |
| AAACACTCTAACACTCAAGT+CGG | + | chr3_2:79572413-79572432 | Msa0428610:intron | 35.0% | |
| CTTCGTAGTAGACTTCATTA+AGG | + | chr3_2:79572633-79572652 | Msa0428610:intron | 35.0% | |
| ACTTCATTAAGGATTGAGCT+TGG | + | chr3_2:79572644-79572663 | Msa0428610:intron | 35.0% | |
| CTTCATTAAGGATTGAGCTT+GGG | + | chr3_2:79572645-79572664 | Msa0428610:intron | 35.0% | |
| TTCTCTATGTATTACAGCCA+AGG | + | chr3_2:79572753-79572772 | Msa0428610:intron | 35.0% | |
| ATTTCACATTGTTCACATGC+TGG | - | chr3_2:79572799-79572818 | None:intergenic | 35.0% | |
| CAAGCTTGACATTAGAGTTT+AGG | + | chr3_2:79573050-79573069 | Msa0428610:CDS | 35.0% | |
| GAATGTGAGCAATGCAAAGA+AGG | + | chr3_2:79570630-79570649 | Msa0428610:CDS | 40.0% | |
| GATCAACACAAAGAAGGCTT+TGG | + | chr3_2:79570660-79570679 | Msa0428610:CDS | 40.0% | |
| !! | ATGGGAGATTTGTTGAAGGA+AGG | + | chr3_2:79570893-79570912 | Msa0428610:CDS | 40.0% |
| TGAGCCTAAGGAAACTCATT+TGG | + | chr3_2:79571293-79571312 | Msa0428610:CDS | 40.0% | |
| GAGCCTAAGGAAACTCATTT+GGG | + | chr3_2:79571294-79571313 | Msa0428610:CDS | 40.0% | |
| CAACCCAAATGAGTTTCCTT+AGG | - | chr3_2:79571300-79571319 | None:intergenic | 40.0% | |
| AGAATGGAATGCGAAGAGAT+TGG | + | chr3_2:79571497-79571516 | Msa0428610:CDS | 40.0% | |
| AATCAGAGATCGTTGTACCA+AGG | + | chr3_2:79571522-79571541 | Msa0428610:CDS | 40.0% | |
| TGCCTTAGTTATGATCTCCT+TGG | - | chr3_2:79571542-79571561 | None:intergenic | 40.0% | |
| TAGCTACTGCAATCTTGTGA+AGG | - | chr3_2:79571748-79571767 | None:intergenic | 40.0% | |
| ACTGCTGAGAGAATACAATC+TGG | + | chr3_2:79571812-79571831 | Msa0428610:CDS | 40.0% | |
| ! | TGGAATGTGTACTTTTCTCC+TGG | + | chr3_2:79572470-79572489 | Msa0428610:intron | 40.0% |
| ! | AATGTGTACTTTTCTCCTGG+TGG | + | chr3_2:79572473-79572492 | Msa0428610:intron | 40.0% |
| GGCAGAGTTTCAAGAGAATT+TGG | + | chr3_2:79572511-79572530 | Msa0428610:intron | 40.0% | |
| CCACGAAGATAATCTCTCAA+CGG | - | chr3_2:79572544-79572563 | None:intergenic | 40.0% | |
| TCTATGTATTACAGCCAAGG+TGG | + | chr3_2:79572756-79572775 | Msa0428610:intron | 40.0% | |
| TCTTTCTGTTGGACATGTCA+AGG | - | chr3_2:79573107-79573126 | None:intergenic | 40.0% | |
| TGTCCAACAGAAAGAGTGAT+TGG | + | chr3_2:79573112-79573131 | Msa0428610:CDS | 40.0% | |
| TCACCAATCACTCTTTCTGT+TGG | - | chr3_2:79573118-79573137 | None:intergenic | 40.0% | |
| AGATGTGTGTATTGCTGATC+GGG | - | chr3_2:79573169-79573188 | None:intergenic | 40.0% | |
| CAGATGTGTGTATTGCTGAT+CGG | - | chr3_2:79573170-79573189 | None:intergenic | 40.0% | |
| TTGTTCGAGCTAGATCTGAA+TGG | + | chr3_2:79573218-79573237 | Msa0428610:CDS | 40.0% | |
| ! | CAACACAAAGAAGGCTTTGG+AGG | + | chr3_2:79570663-79570682 | Msa0428610:CDS | 45.0% |
| GAATGGTTTACTAGTGGCAG+AGG | + | chr3_2:79570819-79570838 | Msa0428610:CDS | 45.0% | |
| TCCAGATAGAACTGCTACCA+TGG | + | chr3_2:79570960-79570979 | Msa0428610:CDS | 45.0% | |
| TCCATGGTAGCAGTTCTATC+TGG | - | chr3_2:79570964-79570983 | None:intergenic | 45.0% | |
| !! | CATGTTACAAGCTCTGGGAT+AGG | + | chr3_2:79571241-79571260 | Msa0428610:CDS | 45.0% |
| !! | TAGGGCCTAGAAGCATCTTA+TGG | - | chr3_2:79571373-79571392 | None:intergenic | 45.0% |
| !! | GAGTTGATGAAACGCAACTG+AGG | + | chr3_2:79572354-79572373 | Msa0428610:intron | 45.0% |
| !!! | CTCAAGTCGGTTTTTGAGTG+AGG | + | chr3_2:79572426-79572445 | Msa0428610:intron | 45.0% |
| !!! | AAGTCGGTTTTTGAGTGAGG+TGG | + | chr3_2:79572429-79572448 | Msa0428610:intron | 45.0% |
| ! | TATAAAAGTACACCGCCACC+AGG | - | chr3_2:79572491-79572510 | None:intergenic | 45.0% |
| !!! | TGGTGGCGGTGTACTTTTAT+AGG | + | chr3_2:79572490-79572509 | Msa0428610:intron | 45.0% |
| CCGTTGAGAGATTATCTTCG+TGG | + | chr3_2:79572541-79572560 | Msa0428610:intron | 45.0% | |
| TTAAGGATTGAGCTTGGGTC+TGG | + | chr3_2:79572650-79572669 | Msa0428610:intron | 45.0% | |
| ACATCCATGTCATTCCACCT+TGG | - | chr3_2:79572773-79572792 | None:intergenic | 45.0% | |
| !! | ATAAAAATAAATAAATATGA+TGG | + | chr3_2:79572870-79572889 | Msa0428610:intron | 5.0% |
| !! | GTTACAAGCTCTGGGATAGG+AGG | + | chr3_2:79571244-79571263 | Msa0428610:CDS | 50.0% |
| ! | GGGATAGGAGGAGATGGATT+TGG | + | chr3_2:79571256-79571275 | Msa0428610:CDS | 50.0% |
| TTTCCTTAGGCTCATCTCGC+GGG | - | chr3_2:79571287-79571306 | None:intergenic | 50.0% | |
| GTTTCCTTAGGCTCATCTCG+CGG | - | chr3_2:79571288-79571307 | None:intergenic | 50.0% | |
| GTGGATGCAGCAGGAAAGAA+TGG | + | chr3_2:79571481-79571500 | Msa0428610:CDS | 50.0% | |
| TGAAACGCAACTGAGGACGA+TGG | + | chr3_2:79572361-79572380 | Msa0428610:intron | 50.0% | |
| ! | GTGTACTTTTCTCCTGGTGG+CGG | + | chr3_2:79572476-79572495 | Msa0428610:intron | 50.0% |
| ACAGCCAAGGTGGAATGACA+TGG | + | chr3_2:79572766-79572785 | Msa0428610:intron | 50.0% | |
| !! | AGCTCTGGGATAGGAGGAGA+TGG | + | chr3_2:79571250-79571269 | Msa0428610:CDS | 55.0% |
| GATACTTGGGTGGATGCAGC+AGG | + | chr3_2:79571472-79571491 | Msa0428610:CDS | 55.0% | |
| TTGAGGTGGACCGAGATCGA+CGG | + | chr3_2:79572328-79572347 | Msa0428610:intron | 55.0% | |
| TCAACTCCGACCGTCGATCT+CGG | - | chr3_2:79572341-79572360 | None:intergenic | 55.0% | |
| AGGACGATGGCTGAGCTCTT+TGG | + | chr3_2:79572374-79572393 | Msa0428610:intron | 55.0% | |
| CTACCCGCGAGATGAGCCTA+AGG | + | chr3_2:79571281-79571300 | Msa0428610:CDS | 60.0% | |
| CGATGGCTGAGCTCTTTGGC+AGG | + | chr3_2:79572378-79572397 | Msa0428610:intron | 60.0% | |
| GGTGGACCGAGATCGACGGT+CGG | + | chr3_2:79572332-79572351 | Msa0428610:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 79570592 | 79573264 | 79570592 | ID=Msa0428610;Name=Msa0428610 |
| chr3_2 | mRNA | 79570592 | 79573264 | 79570592 | ID=Msa0428610-mRNA-1;Parent=Msa0428610;Name=Msa0428610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.6|0.33|1|1|1|6|0|386 |
| chr3_2 | exon | 79570592 | 79571005 | 79570592 | ID=Msa0428610-mRNA-1:exon:21460;Parent=Msa0428610-mRNA-1 |
| chr3_2 | exon | 79571226 | 79571359 | 79571226 | ID=Msa0428610-mRNA-1:exon:21461;Parent=Msa0428610-mRNA-1 |
| chr3_2 | exon | 79571453 | 79571566 | 79571453 | ID=Msa0428610-mRNA-1:exon:21462;Parent=Msa0428610-mRNA-1 |
| chr3_2 | exon | 79571664 | 79571841 | 79571664 | ID=Msa0428610-mRNA-1:exon:21463;Parent=Msa0428610-mRNA-1 |
| chr3_2 | exon | 79572770 | 79572838 | 79572770 | ID=Msa0428610-mRNA-1:exon:21464;Parent=Msa0428610-mRNA-1 |
| chr3_2 | exon | 79573013 | 79573264 | 79573013 | ID=Msa0428610-mRNA-1:exon:21465;Parent=Msa0428610-mRNA-1 |
| chr3_2 | CDS | 79570592 | 79571005 | 79570592 | ID=Msa0428610-mRNA-1:cds;Parent=Msa0428610-mRNA-1 |
| chr3_2 | CDS | 79571226 | 79571359 | 79571226 | ID=Msa0428610-mRNA-1:cds;Parent=Msa0428610-mRNA-1 |
| chr3_2 | CDS | 79571453 | 79571566 | 79571453 | ID=Msa0428610-mRNA-1:cds;Parent=Msa0428610-mRNA-1 |
| chr3_2 | CDS | 79571664 | 79571841 | 79571664 | ID=Msa0428610-mRNA-1:cds;Parent=Msa0428610-mRNA-1 |
| chr3_2 | CDS | 79572770 | 79572838 | 79572770 | ID=Msa0428610-mRNA-1:cds;Parent=Msa0428610-mRNA-1 |
| chr3_2 | CDS | 79573013 | 79573264 | 79573013 | ID=Msa0428610-mRNA-1:cds;Parent=Msa0428610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
