Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474970 | XP_003602789.1 | 96.899 | 387 | 11 | 1 | 1 | 386 | 1 | 387 | 0.0 | 774 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474970 | sp|Q9SJE2|FATB_ARATH | 55.872 | 281 | 116 | 3 | 102 | 382 | 130 | 402 | 1.62e-106 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474970 | G7J3D9 | 96.899 | 387 | 11 | 1 | 1 | 386 | 1 | 387 | 0.0 | 774 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0428610 | Msa0474970 | 0.843372 | 1.459368e-58 | -8.615850e-47 |
| Msa0474970 | Msa1094410 | 0.807088 | 5.996443e-50 | -8.615850e-47 |
| Msa0474970 | Msa1131270 | 0.835267 | 1.853066e-56 | -8.615850e-47 |
| Msa0474970 | Msa1203440 | 0.813736 | 2.200700e-51 | -8.615850e-47 |
| Msa0474970 | Msa1255690 | 0.804015 | 2.645675e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474970 | MtrunA17_Chr3g0132041 | 96.899 | 387 | 11 | 1 | 1 | 386 | 1 | 387 | 0.0 | 774 |
| Msa0474970 | MtrunA17_Chr2g0306391 | 57.092 | 282 | 110 | 5 | 102 | 382 | 128 | 399 | 2.77e-107 | 321 |
| Msa0474970 | MtrunA17_Chr4g0062811 | 52.313 | 281 | 126 | 3 | 102 | 382 | 126 | 398 | 9.59e-103 | 310 |
| Msa0474970 | MtrunA17_Chr7g0235761 | 39.423 | 312 | 171 | 5 | 88 | 382 | 56 | 366 | 1.55e-76 | 241 |
| Msa0474970 | MtrunA17_Chr1g0208941 | 38.736 | 364 | 177 | 10 | 53 | 382 | 12 | 363 | 1.62e-73 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0474970 | AT1G08510.1 | 55.872 | 281 | 116 | 3 | 102 | 382 | 130 | 402 | 1.65e-107 | 322 |
| Msa0474970 | AT3G25110.1 | 41.608 | 286 | 161 | 3 | 102 | 382 | 75 | 359 | 2.41e-77 | 243 |
| Msa0474970 | AT4G13050.1 | 37.318 | 343 | 183 | 8 | 55 | 385 | 45 | 367 | 6.39e-76 | 239 |
Find 66 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAAGTGGACACAGTTAA+TGG | 0.236515 | 3_3:+78033369 | Msa0474970:CDS |
| GTTATTAGGTCCTATGAAAT+TGG | 0.286137 | 3_3:+78033519 | Msa0474970:CDS |
| GCAATCTTGTGAAGGTAAAA+AGG | 0.290395 | 3_3:-78034350 | None:intergenic |
| TCTATTGACTGAATTATTAT+CGG | 0.310808 | 3_3:-78035765 | None:intergenic |
| CAAGCTTAACATTAGAGTTT+AGG | 0.318368 | 3_3:+78035675 | Msa0474970:CDS |
| CTAAATCATGTTACAAGCTC+TGG | 0.322289 | 3_3:+78033854 | Msa0474970:CDS |
| TGAGCCTAAGGAAACTCATT+TGG | 0.347394 | 3_3:+78033912 | Msa0474970:CDS |
| GATGTTGCTCTTGTTACAAA+TGG | 0.353240 | 3_3:+78033456 | Msa0474970:CDS |
| ACATTAGCTTACAAGGGAAT+TGG | 0.354573 | 3_3:+78033190 | Msa0474970:CDS |
| GGGATAGGAGGAGATGGATT+TGG | 0.362524 | 3_3:+78033875 | Msa0474970:CDS |
| TCCATGGTAGCAGTTCTATC+TGG | 0.363190 | 3_3:-78033543 | None:intergenic |
| TTGAAGGAAGGTTTGTGTTT+AGG | 0.363251 | 3_3:+78033487 | Msa0474970:CDS |
| TCTATCTGGACCAATTTCAT+AGG | 0.414482 | 3_3:-78033529 | None:intergenic |
| GTGATTACAAATTGTAATCA+TGG | 0.416314 | 3_3:+78033336 | Msa0474970:CDS |
| GATCAACACAAAGAAGGCTT+TGG | 0.438422 | 3_3:+78033242 | Msa0474970:CDS |
| AAGAAATTGAAATTGATACT+TGG | 0.442643 | 3_3:+78034075 | Msa0474970:CDS |
| GAGCCTAAGGAAACTCATTT+GGG | 0.450636 | 3_3:+78033913 | Msa0474970:CDS |
| TGCCTTAGTTATGATCTCCT+TGG | 0.462334 | 3_3:-78034156 | None:intergenic |
| TCACCAATCACTCTTTCTGT+TGG | 0.465994 | 3_3:-78035740 | None:intergenic |
| ATCAGCAACATTAGCTTACA+AGG | 0.469830 | 3_3:+78033183 | Msa0474970:CDS |
| AGAAATTGAAATTGATACTT+GGG | 0.473173 | 3_3:+78034076 | Msa0474970:CDS |
| CAACCCAAATGAGTTTCCTT+AGG | 0.476925 | 3_3:-78033916 | None:intergenic |
| GTTAATGGAACAAAGGTGAA+TGG | 0.477738 | 3_3:+78033384 | Msa0474970:CDS |
| ATGGGAGATTTGTTGAAGGA+AGG | 0.479142 | 3_3:+78033475 | Msa0474970:CDS |
| AGATGTGTGTATTGCTGATC+GGG | 0.482567 | 3_3:-78035791 | None:intergenic |
| GAATGTGAGCAATGCAAAGA+AGG | 0.493810 | 3_3:+78033212 | Msa0474970:CDS |
| GTGGATGCAGCAGGAAAGAA+TGG | 0.503767 | 3_3:+78034098 | Msa0474970:CDS |
| ATGTTGCTCTTGTTACAAAT+GGG | 0.508572 | 3_3:+78033457 | Msa0474970:CDS |
| TCTCCTTGGTGCAACGATCT+CGG | 0.511116 | 3_3:-78034142 | None:intergenic |
| GATACTTGGGTGGATGCAGC+AGG | 0.512312 | 3_3:+78034089 | Msa0474970:CDS |
| TGTCCAACAGAAAGAGTGAT+TGG | 0.513252 | 3_3:+78035737 | Msa0474970:CDS |
| TGAGAGAATACAATCTGGTT+TGG | 0.514880 | 3_3:+78034430 | Msa0474970:CDS |
| TCTTTCTGTTGGACATGTCA+AGG | 0.515470 | 3_3:-78035729 | None:intergenic |
| TCCAGATAGAACTGCTACCA+TGG | 0.517690 | 3_3:+78033542 | Msa0474970:CDS |
| CAACACAAAGAAGGCTTTGG+AGG | 0.518895 | 3_3:+78033245 | Msa0474970:CDS |
| ATTTCACATTGTTCACATGC+TGG | 0.522323 | 3_3:-78035421 | None:intergenic |
| ATGAAAATCTTCGTTTGTTG+TGG | 0.528344 | 3_3:-78033311 | None:intergenic |
| TAAATCATGTTACAAGCTCT+GGG | 0.534439 | 3_3:+78033855 | Msa0474970:CDS |
| CACCAAGGAGATCATAACTA+AGG | 0.539519 | 3_3:+78034154 | Msa0474970:CDS |
| AAGTACAGAGATACAACAAA+TGG | 0.541558 | 3_3:+78033957 | Msa0474970:CDS |
| AGAATGGAATGAGAAGAGAT+TGG | 0.544970 | 3_3:+78034114 | Msa0474970:CDS |
| AGCTCTGGGATAGGAGGAGA+TGG | 0.547009 | 3_3:+78033869 | Msa0474970:CDS |
| CATGTTACAAGCTCTGGGAT+AGG | 0.551503 | 3_3:+78033860 | Msa0474970:CDS |
| TTGTTCGAGCTAGATCTGAA+TGG | 0.554018 | 3_3:+78035843 | Msa0474970:CDS |
| GAATGGTTTACTAGTGGCAG+AGG | 0.556582 | 3_3:+78033401 | Msa0474970:CDS |
| AAATATGATCAACACAAAGA+AGG | 0.557480 | 3_3:+78033236 | Msa0474970:CDS |
| GTGAACAATGTGAAATACAT+TGG | 0.558503 | 3_3:+78035428 | Msa0474970:CDS |
| AAAATTCATGAGTGTCTCCA+TGG | 0.562904 | 3_3:-78033559 | None:intergenic |
| GTTACAAGCTCTGGGATAGG+AGG | 0.564203 | 3_3:+78033863 | Msa0474970:CDS |
| ACAAATGGGAGATTTGTTGA+AGG | 0.566686 | 3_3:+78033471 | Msa0474970:CDS |
| ACAATGTGAAATACATTGGA+TGG | 0.571892 | 3_3:+78035432 | Msa0474970:CDS |
| AATTGAAATTGATACTTGGG+TGG | 0.581420 | 3_3:+78034079 | Msa0474970:CDS |
| CAGATGTGTGTATTGCTGAT+CGG | 0.582381 | 3_3:-78035792 | None:intergenic |
| CAACTCGCGAGATGAGCCTA+AGG | 0.586466 | 3_3:+78033900 | Msa0474970:CDS |
| ACTGCTGAGAGAATACAATC+TGG | 0.588100 | 3_3:+78034425 | Msa0474970:CDS |
| ACATCCATGTCATTCCACCT+TGG | 0.618207 | 3_3:-78035395 | None:intergenic |
| TAGCTACTGCAATCTTGTGA+AGG | 0.624182 | 3_3:-78034358 | None:intergenic |
| AAAGGTGAATGGTTTACTAG+TGG | 0.638305 | 3_3:+78033395 | Msa0474970:CDS |
| TCTATGTATTACAGCCAAGG+TGG | 0.638940 | 3_3:+78035381 | Msa0474970:intron |
| ACAGCCAAGGTGGAATGACA+TGG | 0.650706 | 3_3:+78035391 | Msa0474970:intron |
| AGATCATAACTAAGGCAACA+AGG | 0.652831 | 3_3:+78034162 | Msa0474970:CDS |
| GGACACAGTTAATGGAACAA+AGG | 0.657244 | 3_3:+78033377 | Msa0474970:CDS |
| ATGTACACAATCGAATACGT+TGG | 0.681585 | 3_3:+78035703 | Msa0474970:CDS |
| TCAGCAACATTAGCTTACAA+GGG | 0.699612 | 3_3:+78033184 | Msa0474970:CDS |
| AATCCGAGATCGTTGCACCA+AGG | 0.699826 | 3_3:+78034139 | Msa0474970:CDS |
| CTGTGTTTGATGCAGCACAT+GGG | 0.722970 | 3_3:+78034262 | Msa0474970:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAAAAAAAAAAAATGA+TGG | + | chr3_3:78035493-78035512 | Msa0474970:intron | 10.0% |
| !!! | TTTATTTTATTTTTTTGAGC+CGG | + | chr3_3:78033761-78033780 | Msa0474970:intron | 15.0% |
| !!! | TTTTCTCTTAACATATTATT+TGG | - | chr3_3:78034242-78034261 | None:intergenic | 15.0% |
| !!! | TTATCTAATGTGTTATTTAA+GGG | - | chr3_3:78034859-78034878 | None:intergenic | 15.0% |
| !!! | TTTATCTAATGTGTTATTTA+AGG | - | chr3_3:78034860-78034879 | None:intergenic | 15.0% |
| !!! | TTTTCATTTAGCAATTTTCT+AGG | - | chr3_3:78033429-78033448 | None:intergenic | 20.0% |
| !!! | GGAAATGGAAAATATTTTTT+AGG | + | chr3_3:78033823-78033842 | Msa0474970:intron | 20.0% |
| !! | CAATTATGTATAATTATGCA+AGG | - | chr3_3:78034015-78034034 | None:intergenic | 20.0% |
| !! | AAGAAATTGAAATTGATACT+TGG | + | chr3_3:78034075-78034094 | Msa0474970:CDS | 20.0% |
| !! | AGAAATTGAAATTGATACTT+GGG | + | chr3_3:78034076-78034095 | Msa0474970:CDS | 20.0% |
| !!! | CTATTTTCTCTATGTTATTA+AGG | + | chr3_3:78034775-78034794 | Msa0474970:intron | 20.0% |
| !!! | TAATCTTCTAGTACTTTTAT+TGG | - | chr3_3:78035647-78035666 | None:intergenic | 20.0% |
| !!! | TCTATTGACTGAATTATTAT+CGG | - | chr3_3:78035768-78035787 | None:intergenic | 20.0% |
| ! | AAATATGATCAACACAAAGA+AGG | + | chr3_3:78033236-78033255 | Msa0474970:CDS | 25.0% |
| ! | GTGATTACAAATTGTAATCA+TGG | + | chr3_3:78033336-78033355 | Msa0474970:CDS | 25.0% |
| !!! | TTAGGCAGATTTTTGTTATT+AGG | + | chr3_3:78033505-78033524 | Msa0474970:CDS | 25.0% |
| !!! | GTTTTAACTAACATAAAGCA+TGG | + | chr3_3:78033791-78033810 | Msa0474970:intron | 25.0% |
| ! | ATGTATAATTATGCAAGGTA+GGG | - | chr3_3:78034010-78034029 | None:intergenic | 25.0% |
| ! | TATGTATAATTATGCAAGGT+AGG | - | chr3_3:78034011-78034030 | None:intergenic | 25.0% |
| ! | TGAAAATGATAAGTTTGACA+GGG | + | chr3_3:78034049-78034068 | Msa0474970:intron | 25.0% |
| ! | TTGAAAAATAAACTTGAACC+AGG | - | chr3_3:78034474-78034493 | None:intergenic | 25.0% |
| !!! | ACAATCAAGTTTTATAGAAG+TGG | - | chr3_3:78034546-78034565 | None:intergenic | 25.0% |
| ! | TTGATTGTTACACATAATCA+CGG | + | chr3_3:78034558-78034577 | Msa0474970:intron | 25.0% |
| !!! | ATCTCTTTAGTTTTTTGTTC+CGG | - | chr3_3:78035301-78035320 | None:intergenic | 25.0% |
| ! | ATGAAAATCTTCGTTTGTTG+TGG | - | chr3_3:78033314-78033333 | None:intergenic | 30.0% |
| ! | CAACAAACGAAGATTTTCAT+TGG | + | chr3_3:78033314-78033333 | Msa0474970:CDS | 30.0% |
| ! | TGGTAGTACTTTTCATAAAG+TGG | + | chr3_3:78033356-78033375 | Msa0474970:CDS | 30.0% |
| ATGTTGCTCTTGTTACAAAT+GGG | + | chr3_3:78033457-78033476 | Msa0474970:CDS | 30.0% | |
| GTTATTAGGTCCTATGAAAT+TGG | + | chr3_3:78033519-78033538 | Msa0474970:CDS | 30.0% | |
| CATGAAACTTGATTCACATT+TGG | + | chr3_3:78033665-78033684 | Msa0474970:intron | 30.0% | |
| GTTAGTTAAAACAGCAAATC+CGG | - | chr3_3:78033783-78033802 | None:intergenic | 30.0% | |
| TAAATCATGTTACAAGCTCT+GGG | + | chr3_3:78033855-78033874 | Msa0474970:CDS | 30.0% | |
| AAGTACAGAGATACAACAAA+TGG | + | chr3_3:78033957-78033976 | Msa0474970:CDS | 30.0% | |
| CTGAAAATGATAAGTTTGAC+AGG | + | chr3_3:78034048-78034067 | Msa0474970:intron | 30.0% | |
| GAAAATGATAAGTTTGACAG+GGG | + | chr3_3:78034050-78034069 | Msa0474970:intron | 30.0% | |
| AATTGAAATTGATACTTGGG+TGG | + | chr3_3:78034079-78034098 | Msa0474970:CDS | 30.0% | |
| CTGTAAGTTTATTTCATACC+TGG | + | chr3_3:78034453-78034472 | Msa0474970:intron | 30.0% | |
| AAATTTAGGAAGCGACTAAT+CGG | - | chr3_3:78034516-78034535 | None:intergenic | 30.0% | |
| GAACAATTGTGTTGTACTTT+CGG | + | chr3_3:78034647-78034666 | Msa0474970:intron | 30.0% | |
| ! | AAATCTTTTCTACGTCGAAA+TGG | + | chr3_3:78034738-78034757 | Msa0474970:intron | 30.0% |
| !! | TGAAAAGCAAAACTGATTTG+AGG | + | chr3_3:78034924-78034943 | Msa0474970:intron | 30.0% |
| !! | AAGTCAGATTTTGAGTAAGA+TGG | + | chr3_3:78035044-78035063 | Msa0474970:intron | 30.0% |
| GGATGAGACATTTAACATAA+TGG | + | chr3_3:78035065-78035084 | Msa0474970:intron | 30.0% | |
| TCAACATAAGATGTTGATCT+GGG | - | chr3_3:78035193-78035212 | None:intergenic | 30.0% | |
| ATCAACATAAGATGTTGATC+TGG | - | chr3_3:78035194-78035213 | None:intergenic | 30.0% | |
| !! | ATTATGTGCTGATTGATTGT+TGG | + | chr3_3:78035212-78035231 | Msa0474970:intron | 30.0% |
| GTGAACAATGTGAAATACAT+TGG | + | chr3_3:78035428-78035447 | Msa0474970:CDS | 30.0% | |
| ACAATGTGAAATACATTGGA+TGG | + | chr3_3:78035432-78035451 | Msa0474970:CDS | 30.0% | |
| !! | ATACATTGGATGGATTTTAG+AGG | + | chr3_3:78035442-78035461 | Msa0474970:CDS | 30.0% |
| CAAGCTTAACATTAGAGTTT+AGG | + | chr3_3:78035675-78035694 | Msa0474970:CDS | 30.0% | |
| ! | ATCAGCAACATTAGCTTACA+AGG | + | chr3_3:78033183-78033202 | Msa0474970:CDS | 35.0% |
| ! | TCAGCAACATTAGCTTACAA+GGG | + | chr3_3:78033184-78033203 | Msa0474970:CDS | 35.0% |
| ! | ACATTAGCTTACAAGGGAAT+TGG | + | chr3_3:78033190-78033209 | Msa0474970:CDS | 35.0% |
| CATAAAGTGGACACAGTTAA+TGG | + | chr3_3:78033369-78033388 | Msa0474970:CDS | 35.0% | |
| GTTAATGGAACAAAGGTGAA+TGG | + | chr3_3:78033384-78033403 | Msa0474970:CDS | 35.0% | |
| AAAGGTGAATGGTTTACTAG+TGG | + | chr3_3:78033395-78033414 | Msa0474970:CDS | 35.0% | |
| GATGTTGCTCTTGTTACAAA+TGG | + | chr3_3:78033456-78033475 | Msa0474970:CDS | 35.0% | |
| !! | ACAAATGGGAGATTTGTTGA+AGG | + | chr3_3:78033471-78033490 | Msa0474970:CDS | 35.0% |
| TTGAAGGAAGGTTTGTGTTT+AGG | + | chr3_3:78033487-78033506 | Msa0474970:CDS | 35.0% | |
| TCTATCTGGACCAATTTCAT+AGG | - | chr3_3:78033532-78033551 | None:intergenic | 35.0% | |
| AAAATTCATGAGTGTCTCCA+TGG | - | chr3_3:78033562-78033581 | None:intergenic | 35.0% | |
| ! | GACACTCATGAATTTTCTTC+AGG | + | chr3_3:78033566-78033585 | Msa0474970:CDS | 35.0% |
| CAAGTTTCATGTTATACGTG+TGG | - | chr3_3:78033656-78033675 | None:intergenic | 35.0% | |
| AACACAACGATTGATCATGT+GGG | - | chr3_3:78033718-78033737 | None:intergenic | 35.0% | |
| CATAAAGCATGGATGAACTA+AGG | + | chr3_3:78033802-78033821 | Msa0474970:intron | 35.0% | |
| CTAAATCATGTTACAAGCTC+TGG | + | chr3_3:78033854-78033873 | Msa0474970:CDS | 35.0% | |
| AGAATGGAATGAGAAGAGAT+TGG | + | chr3_3:78034114-78034133 | Msa0474970:CDS | 35.0% | |
| AGATCATAACTAAGGCAACA+AGG | + | chr3_3:78034162-78034181 | Msa0474970:CDS | 35.0% | |
| ! | AGCTCTTTTCTAACTTCTTC+AGG | - | chr3_3:78034326-78034345 | None:intergenic | 35.0% |
| GCAATCTTGTGAAGGTAAAA+AGG | - | chr3_3:78034353-78034372 | None:intergenic | 35.0% | |
| TGAGAGAATACAATCTGGTT+TGG | + | chr3_3:78034430-78034449 | Msa0474970:CDS | 35.0% | |
| GAAGTGGAGAAAGCAAATTT+AGG | - | chr3_3:78034530-78034549 | None:intergenic | 35.0% | |
| !! | AAAGCAAAACTGATTTGAGG+TGG | + | chr3_3:78034927-78034946 | Msa0474970:intron | 35.0% |
| AATTTGGCAAAAATCCGTTG+AGG | + | chr3_3:78035142-78035161 | Msa0474970:intron | 35.0% | |
| CTTCGTAGTAGACTTCATTA+AGG | + | chr3_3:78035257-78035276 | Msa0474970:intron | 35.0% | |
| ACTTCATTAAGGATTGAGCT+TGG | + | chr3_3:78035268-78035287 | Msa0474970:intron | 35.0% | |
| CTTCATTAAGGATTGAGCTT+GGG | + | chr3_3:78035269-78035288 | Msa0474970:intron | 35.0% | |
| TTCTCTATGTATTACAGCCA+AGG | + | chr3_3:78035378-78035397 | Msa0474970:intron | 35.0% | |
| ATTTCACATTGTTCACATGC+TGG | - | chr3_3:78035424-78035443 | None:intergenic | 35.0% | |
| ATGTACACAATCGAATACGT+TGG | + | chr3_3:78035703-78035722 | Msa0474970:CDS | 35.0% | |
| GAATGTGAGCAATGCAAAGA+AGG | + | chr3_3:78033212-78033231 | Msa0474970:CDS | 40.0% | |
| GATCAACACAAAGAAGGCTT+TGG | + | chr3_3:78033242-78033261 | Msa0474970:CDS | 40.0% | |
| GGACACAGTTAATGGAACAA+AGG | + | chr3_3:78033377-78033396 | Msa0474970:CDS | 40.0% | |
| !! | ATGGGAGATTTGTTGAAGGA+AGG | + | chr3_3:78033475-78033494 | Msa0474970:CDS | 40.0% |
| GAACACAACGATTGATCATG+TGG | - | chr3_3:78033719-78033738 | None:intergenic | 40.0% | |
| GCATGGATGAACTAAGGAAA+TGG | + | chr3_3:78033808-78033827 | Msa0474970:intron | 40.0% | |
| TGAGCCTAAGGAAACTCATT+TGG | + | chr3_3:78033912-78033931 | Msa0474970:CDS | 40.0% | |
| GAGCCTAAGGAAACTCATTT+GGG | + | chr3_3:78033913-78033932 | Msa0474970:CDS | 40.0% | |
| CAACCCAAATGAGTTTCCTT+AGG | - | chr3_3:78033919-78033938 | None:intergenic | 40.0% | |
| CACCAAGGAGATCATAACTA+AGG | + | chr3_3:78034154-78034173 | Msa0474970:CDS | 40.0% | |
| TGCCTTAGTTATGATCTCCT+TGG | - | chr3_3:78034159-78034178 | None:intergenic | 40.0% | |
| TAGCTACTGCAATCTTGTGA+AGG | - | chr3_3:78034361-78034380 | None:intergenic | 40.0% | |
| ACTGCTGAGAGAATACAATC+TGG | + | chr3_3:78034425-78034444 | Msa0474970:CDS | 40.0% | |
| ! | GGCAGAGTTTCTAGAGAATT+TGG | + | chr3_3:78035126-78035145 | Msa0474970:intron | 40.0% |
| CCACGAAGATAATCTCTCAA+CGG | - | chr3_3:78035168-78035187 | None:intergenic | 40.0% | |
| TCTATGTATTACAGCCAAGG+TGG | + | chr3_3:78035381-78035400 | Msa0474970:intron | 40.0% | |
| TCTTTCTGTTGGACATGTCA+AGG | - | chr3_3:78035732-78035751 | None:intergenic | 40.0% | |
| TGTCCAACAGAAAGAGTGAT+TGG | + | chr3_3:78035737-78035756 | Msa0474970:CDS | 40.0% | |
| TCACCAATCACTCTTTCTGT+TGG | - | chr3_3:78035743-78035762 | None:intergenic | 40.0% | |
| AGATGTGTGTATTGCTGATC+GGG | - | chr3_3:78035794-78035813 | None:intergenic | 40.0% | |
| CAGATGTGTGTATTGCTGAT+CGG | - | chr3_3:78035795-78035814 | None:intergenic | 40.0% | |
| TTGTTCGAGCTAGATCTGAA+TGG | + | chr3_3:78035843-78035862 | Msa0474970:CDS | 40.0% | |
| ! | CAACACAAAGAAGGCTTTGG+AGG | + | chr3_3:78033245-78033264 | Msa0474970:CDS | 45.0% |
| GAATGGTTTACTAGTGGCAG+AGG | + | chr3_3:78033401-78033420 | Msa0474970:CDS | 45.0% | |
| TCCAGATAGAACTGCTACCA+TGG | + | chr3_3:78033542-78033561 | Msa0474970:CDS | 45.0% | |
| TCCATGGTAGCAGTTCTATC+TGG | - | chr3_3:78033546-78033565 | None:intergenic | 45.0% | |
| !! | CATGTTACAAGCTCTGGGAT+AGG | + | chr3_3:78033860-78033879 | Msa0474970:CDS | 45.0% |
| ACTGTGTTTGATGCAGCACA+TGG | + | chr3_3:78034261-78034280 | Msa0474970:intron | 45.0% | |
| CTGTGTTTGATGCAGCACAT+GGG | + | chr3_3:78034262-78034281 | Msa0474970:intron | 45.0% | |
| !! | GAGTTGATGAAACGCAACTG+AGG | + | chr3_3:78034967-78034986 | Msa0474970:intron | 45.0% |
| TGTTTGCATGTACAACACCC+GGG | - | chr3_3:78035013-78035032 | None:intergenic | 45.0% | |
| GTGTTTGCATGTACAACACC+CGG | - | chr3_3:78035014-78035033 | None:intergenic | 45.0% | |
| TGGAATGTGTACGTTTCTCC+TGG | + | chr3_3:78035085-78035104 | Msa0474970:intron | 45.0% | |
| AATGTGTACGTTTCTCCTGG+TGG | + | chr3_3:78035088-78035107 | Msa0474970:intron | 45.0% | |
| ! | TATAAAAGTACACCGCCACC+AGG | - | chr3_3:78035106-78035125 | None:intergenic | 45.0% |
| !!! | TGGTGGCGGTGTACTTTTAT+AGG | + | chr3_3:78035105-78035124 | Msa0474970:intron | 45.0% |
| TAATCTCTCAACGGCCTCAA+CGG | - | chr3_3:78035159-78035178 | None:intergenic | 45.0% | |
| CCGTTGAGAGATTATCTTCG+TGG | + | chr3_3:78035165-78035184 | Msa0474970:intron | 45.0% | |
| TTAAGGATTGAGCTTGGGTC+TGG | + | chr3_3:78035274-78035293 | Msa0474970:intron | 45.0% | |
| ACATCCATGTCATTCCACCT+TGG | - | chr3_3:78035398-78035417 | None:intergenic | 45.0% | |
| !! | GTTACAAGCTCTGGGATAGG+AGG | + | chr3_3:78033863-78033882 | Msa0474970:CDS | 50.0% |
| ! | GGGATAGGAGGAGATGGATT+TGG | + | chr3_3:78033875-78033894 | Msa0474970:CDS | 50.0% |
| GTGGATGCAGCAGGAAAGAA+TGG | + | chr3_3:78034098-78034117 | Msa0474970:CDS | 50.0% | |
| AATCCGAGATCGTTGCACCA+AGG | + | chr3_3:78034139-78034158 | Msa0474970:CDS | 50.0% | |
| ! | TCTCCTTGGTGCAACGATCT+CGG | - | chr3_3:78034145-78034164 | None:intergenic | 50.0% |
| !! | GGTGGACTGAGATCGACAAT+CGG | + | chr3_3:78034945-78034964 | Msa0474970:intron | 50.0% |
| TGAAACGCAACTGAGGACGA+TGG | + | chr3_3:78034974-78034993 | Msa0474970:intron | 50.0% | |
| ACAGCCAAGGTGGAATGACA+TGG | + | chr3_3:78035391-78035410 | Msa0474970:intron | 50.0% | |
| !! | AGCTCTGGGATAGGAGGAGA+TGG | + | chr3_3:78033869-78033888 | Msa0474970:CDS | 55.0% |
| CAACTCGCGAGATGAGCCTA+AGG | + | chr3_3:78033900-78033919 | Msa0474970:CDS | 55.0% | |
| GATACTTGGGTGGATGCAGC+AGG | + | chr3_3:78034089-78034108 | Msa0474970:CDS | 55.0% | |
| AGGACGATGGCTGAGCTCTT+CGG | + | chr3_3:78034987-78035006 | Msa0474970:intron | 55.0% | |
| GTGTACGTTTCTCCTGGTGG+CGG | + | chr3_3:78035091-78035110 | Msa0474970:intron | 55.0% | |
| GATTGAGCTTGGGTCTGGTC+CGG | + | chr3_3:78035279-78035298 | Msa0474970:intron | 55.0% | |
| GATGGCTGAGCTCTTCGGCC+CGG | + | chr3_3:78034992-78035011 | Msa0474970:intron | 65.0% | |
| ATGGCTGAGCTCTTCGGCCC+GGG | + | chr3_3:78034993-78035012 | Msa0474970:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 78033174 | 78035889 | 78033174 | ID=Msa0474970;Name=Msa0474970 |
| chr3_3 | mRNA | 78033174 | 78035889 | 78033174 | ID=Msa0474970-mRNA-1;Parent=Msa0474970;Name=Msa0474970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.6|0.33|1|1|1|6|0|386 |
| chr3_3 | exon | 78033174 | 78033587 | 78033174 | ID=Msa0474970-mRNA-1:exon:20948;Parent=Msa0474970-mRNA-1 |
| chr3_3 | exon | 78033845 | 78033978 | 78033845 | ID=Msa0474970-mRNA-1:exon:20949;Parent=Msa0474970-mRNA-1 |
| chr3_3 | exon | 78034070 | 78034183 | 78034070 | ID=Msa0474970-mRNA-1:exon:20950;Parent=Msa0474970-mRNA-1 |
| chr3_3 | exon | 78034277 | 78034454 | 78034277 | ID=Msa0474970-mRNA-1:exon:20951;Parent=Msa0474970-mRNA-1 |
| chr3_3 | exon | 78035395 | 78035463 | 78035395 | ID=Msa0474970-mRNA-1:exon:20952;Parent=Msa0474970-mRNA-1 |
| chr3_3 | exon | 78035638 | 78035889 | 78035638 | ID=Msa0474970-mRNA-1:exon:20953;Parent=Msa0474970-mRNA-1 |
| chr3_3 | CDS | 78033174 | 78033587 | 78033174 | ID=Msa0474970-mRNA-1:cds;Parent=Msa0474970-mRNA-1 |
| chr3_3 | CDS | 78033845 | 78033978 | 78033845 | ID=Msa0474970-mRNA-1:cds;Parent=Msa0474970-mRNA-1 |
| chr3_3 | CDS | 78034070 | 78034183 | 78034070 | ID=Msa0474970-mRNA-1:cds;Parent=Msa0474970-mRNA-1 |
| chr3_3 | CDS | 78034277 | 78034454 | 78034277 | ID=Msa0474970-mRNA-1:cds;Parent=Msa0474970-mRNA-1 |
| chr3_3 | CDS | 78035395 | 78035463 | 78035395 | ID=Msa0474970-mRNA-1:cds;Parent=Msa0474970-mRNA-1 |
| chr3_3 | CDS | 78035638 | 78035889 | 78035638 | ID=Msa0474970-mRNA-1:cds;Parent=Msa0474970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
