AlfalfaGEDB | Msa0429260

M. sativa cultivar zhongmu-4 / Msa0429260

KEGG: K11807
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031974 GO:0031981 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564
PFAM: PF00400.35

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429260	XP_003602948.2	98.158	760	13	1	1	760	1	759	0.0	1557

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429260	sp\|Q94BQ3\|ASG2_ARATH	67.890	763	236	7	1	760	1	757	0.0	1063

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429260	G7J574	98.158	760	13	1	1	760	1	759	0.0	1557

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0387210	Msa0429260	0.805673	1.191426e-49	-8.615850e-47
Msa0429260	Msa0468120	0.803105	4.085113e-49	-8.615850e-47
Msa0429260	Msa0982280	0.808688	2.738210e-50	-8.615850e-47
Msa0429260	Msa1307750	0.808233	3.425755e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429260	MtrunA17_Chr3g0133201	98.158	760	13	1	1	760	1	759	0.0	1557
Msa0429260	MtrunA17_Chr2g0325981	33.670	297	168	7	14	310	14	281	6.90e-38	147
Msa0429260	MtrunA17_Chr2g0325981	34.848	132	76	3	612	742	303	425	4.52e-15	78.6
Msa0429260	MtrunA17_Chr1g0211421	30.576	278	161	7	31	307	33	279	8.04e-31	127
Msa0429260	MtrunA17_Chr1g0211421	43.860	114	60	2	585	695	296	408	6.64e-20	94.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0429260	AT5G10940.2	68.200	761	234	7	1	760	1	754	0.0	1066
Msa0429260	AT5G10940.1	67.890	763	236	7	1	760	1	757	0.0	1063
Msa0429260	AT3G45620.1	33.893	298	173	7	13	310	17	290	2.49e-38	149
Msa0429260	AT3G45620.1	43.750	96	51	2	600	693	298	392	4.37e-17	85.5
Msa0429260	AT3G45620.2	35.870	276	153	7	35	310	73	324	5.21e-37	146
Msa0429260	AT3G45620.2	43.750	96	51	2	600	693	332	426	5.35e-17	85.5
Msa0429260	AT4G38480.2	31.985	272	151	7	37	308	8	245	7.31e-32	129
Msa0429260	AT4G38480.2	48.810	84	42	1	612	695	268	350	5.34e-17	84.7
Msa0429260	AT4G38480.1	29.315	365	200	11	37	392	41	356	7.73e-32	130
Msa0429260	AT4G38480.1	48.810	84	42	1	612	695	301	383	5.05e-17	85.1

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Find 206 sgRNAs with CRISPR-Local

Find 919 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATTTGTGAAGACAT+TGG	0.566595	3_2:-80568123	None:intergenic
AAAATATGCTAAGAAGTCAT+TGG	0.444166	3_2:+80568322	Msa0429260:CDS
AAACAACATCGATTCTTCAA+TGG	0.446663	3_2:+80562598	Msa0429260:exon
AAACATGGAAAGTAAATTAT+GGG	0.407287	3_2:+80575470	Msa0429260:three_prime_UTR
AAAGAGAATAAGTTGAAACA+TGG	0.551263	3_2:+80575455	Msa0429260:three_prime_UTR
AAAGCAAGAACTTGTTTAGG+AGG	0.489555	3_2:-80565796	None:intergenic
AAAGGTTCATTATTGGTATC+CGG	0.412483	3_2:+80563478	Msa0429260:CDS
AAATAATTAACACAAGGAGG+TGG	0.612689	3_2:-80566025	None:intergenic
AAATGCTGAAGCAAGTGGCT+CGG	0.603472	3_2:+80570126	Msa0429260:CDS
AAATGGTTCTAAGAGCTCAA+AGG	0.570232	3_2:-80574184	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGAAAATCGGAATGAGAA+GGG	-	chr3_2:80562725-80562744	None:intergenic	30.0%
AATTGAAAATCGGAATGAGA+AGG	-	chr3_2:80562726-80562745	None:intergenic	30.0%
TTCTCAAGAAAAAGAGTTAG+AGG	+	chr3_2:80562898-80562917	Msa0429260:CDS	30.0%
GTATATTGCAATCTATGGAA+AGG	-	chr3_2:80563293-80563312	None:intergenic	30.0%
AAGCAAGATTTAAGAAACAC+TGG	-	chr3_2:80563324-80563343	None:intergenic	30.0%
TCAAAAGGCAACAAACAAAA+CGG	-	chr3_2:80563389-80563408	None:intergenic	30.0%
TCTTGCTCATGATTTGAATA+GGG	+	chr3_2:80563418-80563437	Msa0429260:intron	30.0%
AAAGGTTCATTATTGGTATC+CGG	+	chr3_2:80563478-80563497	Msa0429260:CDS	30.0%
AAATTCTGCAGATCAATGTT+TGG	+	chr3_2:80563660-80563679	Msa0429260:intron	30.0%
GAATATATTTGCAGTATGTC+CGG	-	chr3_2:80563723-80563742	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	80562456	80575760	80562456	ID=Msa0429260;Name=Msa0429260
chr3_2	mRNA	80562456	80575760	80562456	ID=Msa0429260-mRNA-1;Parent=Msa0429260;Name=Msa0429260-mRNA-1;_AED=0.09;_eAED=0.09;_QI=161\|1\|1\|1\|0.94\|0.9\|20\|404\|760
chr3_2	exon	80562456	80562688	80562456	ID=Msa0429260-mRNA-1:exon:22057;Parent=Msa0429260-mRNA-1
chr3_2	exon	80562848	80562919	80562848	ID=Msa0429260-mRNA-1:exon:22058;Parent=Msa0429260-mRNA-1
chr3_2	exon	80563439	80563516	80563439	ID=Msa0429260-mRNA-1:exon:22059;Parent=Msa0429260-mRNA-1
chr3_2	exon	80563671	80563805	80563671	ID=Msa0429260-mRNA-1:exon:22060;Parent=Msa0429260-mRNA-1
chr3_2	exon	80563882	80563989	80563882	ID=Msa0429260-mRNA-1:exon:22061;Parent=Msa0429260-mRNA-1
chr3_2	exon	80564104	80564232	80564104	ID=Msa0429260-mRNA-1:exon:22062;Parent=Msa0429260-mRNA-1
chr3_2	exon	80565757	80565872	80565757	ID=Msa0429260-mRNA-1:exon:22063;Parent=Msa0429260-mRNA-1
chr3_2	exon	80565955	80566072	80565955	ID=Msa0429260-mRNA-1:exon:22064;Parent=Msa0429260-mRNA-1
chr3_2	exon	80566911	80567016	80566911	ID=Msa0429260-mRNA-1:exon:22065;Parent=Msa0429260-mRNA-1
chr3_2	exon	80568027	80568172	80568027	ID=Msa0429260-mRNA-1:exon:22066;Parent=Msa0429260-mRNA-1
chr3_2	exon	80568299	80568466	80568299	ID=Msa0429260-mRNA-1:exon:22067;Parent=Msa0429260-mRNA-1
chr3_2	exon	80568582	80568692	80568582	ID=Msa0429260-mRNA-1:exon:22068;Parent=Msa0429260-mRNA-1
chr3_2	exon	80569454	80569565	80569454	ID=Msa0429260-mRNA-1:exon:22069;Parent=Msa0429260-mRNA-1
chr3_2	exon	80569864	80570201	80569864	ID=Msa0429260-mRNA-1:exon:22070;Parent=Msa0429260-mRNA-1
chr3_2	exon	80571485	80571575	80571485	ID=Msa0429260-mRNA-1:exon:22071;Parent=Msa0429260-mRNA-1
chr3_2	exon	80573186	80573281	80573186	ID=Msa0429260-mRNA-1:exon:22072;Parent=Msa0429260-mRNA-1
chr3_2	exon	80573362	80573432	80573362	ID=Msa0429260-mRNA-1:exon:22073;Parent=Msa0429260-mRNA-1
chr3_2	exon	80573514	80573641	80573514	ID=Msa0429260-mRNA-1:exon:22074;Parent=Msa0429260-mRNA-1
chr3_2	exon	80574182	80574293	80574182	ID=Msa0429260-mRNA-1:exon:22075;Parent=Msa0429260-mRNA-1
chr3_2	exon	80575381	80575760	80575381	ID=Msa0429260-mRNA-1:exon:22076;Parent=Msa0429260-mRNA-1
chr3_2	five_prime_UTR	80562456	80562616	80562456	ID=Msa0429260-mRNA-1:five_prime_utr;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80562617	80562688	80562617	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80562848	80562919	80562848	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80563439	80563516	80563439	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80563671	80563805	80563671	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80563882	80563989	80563882	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80564104	80564232	80564104	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80565757	80565872	80565757	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80565955	80566072	80565955	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80566911	80567016	80566911	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80568027	80568172	80568027	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80568299	80568466	80568299	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80568582	80568692	80568582	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80569454	80569565	80569454	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80569864	80570201	80569864	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80571485	80571575	80571485	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80573186	80573281	80573186	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80573362	80573432	80573362	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80573514	80573641	80573514	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	CDS	80574182	80574269	80574182	ID=Msa0429260-mRNA-1:cds;Parent=Msa0429260-mRNA-1
chr3_2	three_prime_UTR	80574270	80574293	80574270	ID=Msa0429260-mRNA-1:three_prime_utr;Parent=Msa0429260-mRNA-1
chr3_2	three_prime_UTR	80575381	80575760	80575381	ID=Msa0429260-mRNA-1:three_prime_utr;Parent=Msa0429260-mRNA-1

Gene Sequence

>Msa0429260

ATGGATTCCACTCCCTTTCTCGACGGAAACATACACAAAATTCTCGATTCCAGATACCTTCACTCTCGCCCTGATGTTGTTAATCAGAGTTTGCAGACACACTCCTCTTTGATTCGCAGACTTTCTCAAGAAAAAGAGTTAGAGGGACATCTTGGTTGTGTCAATGCTATTGCTTGGAATTCAAAAGGTTCATTATTGGTATCCGGATCAGATGATACGCGGATCAATGTTTGGAGCTATGCTGGTCAGAAACTAGTGCATTCAATTGACACCGGACATACTGCAAATATATTCTGTACTAAGTTCATACCAGAAACATCTGATGAGCTTGTAGCCTCTGGGGCTGGAGATGCTGAAGTTCGGTTATTCAACAGGTCTCGCGTAAGTGGGAATGGACTTAATGATAATCCCATTACTCCATCAGCACTTTACCAGTGCCACACTCGCAGGGTCAAGAAATTGGCTGTTGAAAATGGAAACCCCAATGTGGTATGGAGTGCCAGTGAAGATGGAACCTTAAGACAACATGATTTTCGGGAAGGCACCTCTTGTCCTCCTGCAGGATCTCCACGCCAAGAGTGTCACAATGTTCTACTTGACTTACGGAATGGAGCTAAAAGATCCCTTGGTGATCCTCCTAAACAAGTTCTTGCTTTAAAATCTTTCGATATTAGTTCAACTAGACCTCATTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGTCTGTATGATAGAAGGATGCTACCACCTCTAAGCTCCTGTGGAAAAAGAATGCCTCCACCTCCTTGTGTTAATTATTTTTGTCCAATGCACCTTTCTGATCGTGGACATCCAAGTTTGCACTTAACTCATGTTACATTTAGTCCTGATGGATCTGAGGTTCTCCTGAGCTATAGCGGAGAGCATGTTTACTTGATGAATGTAAATCATGCTGGTGTGAATGAGGTGCAATATACTTCAGGAGATGTTTCAAAGCTGATGACTTACTCTCCAAGCGTTAATGGGGTAGAATTACAGCCTTTTGTTTCCAATGTCTTCACAAATGGTTTTCACACTAAAAATAACATCACTGCCAAGCTTGACAAGTGTAGGAAACTAATAAAATATGCTAAGAAGTCATTGGACGAGGGGGCACCCTATTATGGAATTGAGGCATGCAATGAAGTTTTGAATGGCTACAATCATATCATTGGACCTGCACTAAAACAGGAATGCTTGTGTACTCGTGCTGCACTATTGCTTAAGAGGAAGTGGAAAAACGATGCTCATATGGCTATAAGAGACTGCCATGCTGCTAGGAAATTTGATAAATCCGCATATAAACCACTTTACTACATGTCAGAAGCATTGTCTCAGTTGGGAAAACACAAAGAAGCTTTGGATTTTGCTGTTGCTTCCCACTCGCTGGCCCCATCCAAATCTGAAGTTGCTGAAAGAGTGGAGAATGTGAAAAAGGATATGGTTTTAGCTGAAACTGAGAAAAATAGCAAGACAAATAATGGAAGAGGTGGAAGAATGTTATCATTAAGTGACATTCTCTACCGGACAGAGGCTAATAGTGATACTTCACAAGATGGTCAGAGATCTGACAGGGATGATTCTGATTATGACGAGGAAATGGAGTTGGACTTCGAAACATCAGTGTCTGGTGACGAGGAACATGATTCTGATTCAAATATTCTTCACCGGAGTATGAATCTTAGAATTCATCGAAGAGGTGACTCAAGAGAAAATGCTGAAGCAAGTGGCTCGGACGAATCACCCTCATCATCATCATCATCACAGAATGGCAGAGCTTCATACCAGCCCGAAGCAGCTATTGATATGAAGCAGAGGTTTATTGGGCACTGCAATGTGGGGACTGATATAAAACAGGCTAATTTTCTTGGTCAAAAAGGTGAATATGTTGCCAGTGGTAGTGATGATGGCAGATGGTTTATTTGGGAAAAGCGGACTGGAAGACTCATGAAATTGCTGAGTGGCGATGAATCTGTTGTAAATTGCGTACAATGTCATCCATTTGATTTTGTTGTGGCAACAAGTGGGATTGATAACACGATAAAGATATGGACTCCAAGTGCTCCTGTTGCATCTTCTGTAGCTGGTGGTTCTGCAGGACCAGAAACTGGTGATGTGTTGGGTGCTATGGAGAACAATCAACAAAAGTTATCCCGTAATAGGGATTCAATGCTGCCCTTTGAGCTCTTAGAACCATTTAGAATGCATGAGTTTCCTGAAGGATCACTACGCTTGCGACCTTTTGAATGTGCCCAAACCTAA

Protein sequence

>Msa0429260

MDSTPFLDGNIHKILDSRYLHSRPDVVNQSLQTHSSLIRRLSQEKELEGHLGCVNAIAWNSKGSLLVSGSDDTRINVWSYAGQKLVHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVRLFNRSRVSGNGLNDNPITPSALYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSPRQECHNVLLDLRNGAKRSLGDPPKQVLALKSFDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCGKRMPPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGSEVLLSYSGEHVYLMNVNHAGVNEVQYTSGDVSKLMTYSPSVNGVELQPFVSNVFTNGFHTKNNITAKLDKCRKLIKYAKKSLDEGAPYYGIEACNEVLNGYNHIIGPALKQECLCTRAALLLKRKWKNDAHMAIRDCHAARKFDKSAYKPLYYMSEALSQLGKHKEALDFAVASHSLAPSKSEVAERVENVKKDMVLAETEKNSKTNNGRGGRMLSLSDILYRTEANSDTSQDGQRSDRDDSDYDEEMELDFETSVSGDEEHDSDSNILHRSMNLRIHRRGDSRENAEASGSDESPSSSSSSQNGRASYQPEAAIDMKQRFIGHCNVGTDIKQANFLGQKGEYVASGSDDGRWFIWEKRTGRLMKLLSGDESVVNCVQCHPFDFVVATSGIDNTIKIWTPSAPVASSVAGGSAGPETGDVLGAMENNQQKLSRNRDSMLPFELLEPFRMHEFPEGSLRLRPFECAQT*