AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0430350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430350 MtrunA17_Chr3g0141901 100.000 292 0 0 1 292 108 399 0.0 600
Msa0430350 MtrunA17_Chr3g0145011 97.260 292 8 0 1 292 111 402 0.0 589
Msa0430350 MtrunA17_Chr8g0345461 52.347 277 131 1 10 285 146 422 9.11e-107 317
Msa0430350 MtrunA17_Chr1g0200081 51.228 285 137 2 2 285 148 431 7.62e-105 312
Msa0430350 MtrunA17_Chr4g0050561 54.887 266 119 1 9 273 136 401 6.01e-99 296
Msa0430350 MtrunA17_Chr1g0182711 51.449 276 134 0 3 278 162 437 1.24e-95 289
Msa0430350 MtrunA17_Chr7g0262801 51.449 276 134 0 3 278 161 436 2.11e-95 288
Msa0430350 MtrunA17_Chr1g0192151 49.643 280 140 1 6 285 144 422 3.23e-95 287
Msa0430350 MtrunA17_Chr4g0014731 49.643 280 140 1 6 285 145 423 4.31e-95 287
Msa0430350 MtrunA17_Chr3g0108321 53.695 203 94 0 6 208 136 338 1.94e-76 237
Msa0430350 MtrunA17_Chr1g0180791 42.745 255 138 3 28 280 477 725 6.94e-63 212
Msa0430350 MtrunA17_Chr1g0180791 43.882 237 130 2 29 265 205 438 1.49e-59 202
Msa0430350 MtrunA17_Chr7g0264521 45.217 230 122 2 28 255 478 705 1.50e-61 208
Msa0430350 MtrunA17_Chr7g0264521 43.882 237 130 2 29 265 206 439 3.87e-59 201
Msa0430350 MtrunA17_Chr2g0327121 45.217 230 122 2 28 255 479 706 2.74e-61 207
Msa0430350 MtrunA17_Chr2g0327121 43.038 237 132 1 29 265 207 440 2.17e-56 194
Msa0430350 MtrunA17_Chr8g0388371 42.248 258 140 3 29 278 404 660 2.38e-58 200
Msa0430350 MtrunA17_Chr7g0217421 38.367 245 150 1 29 273 39 282 1.46e-56 187
Msa0430350 MtrunA17_Chr3g0143721 37.959 245 151 1 29 273 249 492 2.83e-55 190
Msa0430350 MtrunA17_Chr2g0331161 40.164 244 145 1 28 271 414 656 3.84e-54 188
Msa0430350 MtrunA17_Chr4g0052411 40.870 230 135 1 29 258 229 457 4.92e-54 186
Msa0430350 MtrunA17_Chr2g0297281 40.969 227 133 1 29 255 286 511 1.51e-53 186
Msa0430350 MtrunA17_Chr8g0362771 40.650 246 143 2 28 273 236 478 1.55e-53 185
Msa0430350 MtrunA17_Chr6g0476861 41.935 248 140 3 29 273 197 443 1.90e-53 184
Msa0430350 MtrunA17_Chr7g0255651 37.190 242 152 0 14 255 267 508 8.00e-53 181
Msa0430350 MtrunA17_Chr7g0255651 30.288 208 139 3 52 255 36 241 3.94e-24 102
Msa0430350 MtrunA17_Chr7g0260601 41.129 248 142 3 29 273 240 486 8.59e-53 183
Msa0430350 MtrunA17_Chr3g0094871 37.903 248 151 2 28 273 10 256 9.99e-52 175
Msa0430350 MtrunA17_Chr7g0248361 41.129 248 142 3 29 273 192 438 1.57e-51 179
Msa0430350 MtrunA17_Chr5g0429571 40.000 250 142 4 28 272 312 558 6.93e-51 179
Msa0430350 MtrunA17_Chr6g0456351 41.475 217 122 2 58 272 345 558 2.14e-50 175
Msa0430350 MtrunA17_Chr1g0158881 43.111 225 121 3 30 253 330 548 2.91e-50 177
Msa0430350 MtrunA17_Chr7g0255721 35.472 265 167 3 29 291 685 947 3.46e-50 177
Msa0430350 MtrunA17_Chr7g0255721 35.931 231 130 4 32 255 389 608 1.93e-32 126
Msa0430350 MtrunA17_Chr3g0135721 42.035 226 127 2 28 253 223 444 3.80e-50 176
Msa0430350 MtrunA17_Chr3g0104211 38.889 252 142 5 28 272 303 549 9.29e-50 176
Msa0430350 MtrunA17_Chr3g0135761 40.249 241 133 3 13 253 213 442 1.27e-48 171
Msa0430350 MtrunA17_Chr4g0033451 40.650 246 133 5 28 265 379 619 2.29e-48 172
Msa0430350 MtrunA17_Chr3g0129971 38.911 257 146 5 24 272 291 544 2.34e-48 172
Msa0430350 MtrunA17_Chr4g0004121 39.844 256 131 9 15 255 224 471 2.50e-48 168
Msa0430350 MtrunA17_Chr4g0031821 39.113 248 147 3 29 273 320 566 5.45e-48 171
Msa0430350 MtrunA17_Chr7g0255691 34.058 276 180 1 14 287 271 546 5.45e-48 168
Msa0430350 MtrunA17_Chr7g0255691 39.111 225 131 3 34 254 22 244 1.27e-38 142
Msa0430350 MtrunA17_Chr7g0255641 35.628 247 156 2 29 273 658 903 1.89e-47 169
Msa0430350 MtrunA17_Chr7g0255641 37.089 213 118 5 68 269 432 639 1.30e-29 118
Msa0430350 MtrunA17_Chr2g0277831 39.301 229 134 2 28 254 532 757 2.56e-47 169
Msa0430350 MtrunA17_Chr2g0277831 38.367 245 146 3 27 267 241 484 1.12e-43 158
Msa0430350 MtrunA17_Chr2g0316851 38.750 240 136 4 31 264 596 830 3.65e-47 169
Msa0430350 MtrunA17_Chr4g0052271 33.566 286 165 7 28 292 118 399 4.06e-47 162
Msa0430350 MtrunA17_Chr4g0043381 36.614 254 148 2 25 268 833 1083 7.25e-47 168
Msa0430350 MtrunA17_Chr4g0043381 24.675 231 148 6 66 271 588 817 9.24e-11 62.4
Msa0430350 MtrunA17_Chr7g0255901 38.095 231 138 5 28 255 638 866 2.36e-46 166
Msa0430350 MtrunA17_Chr3g0127401 38.115 244 143 4 15 255 67 305 3.20e-46 159
Msa0430350 MtrunA17_Chr5g0432631 40.773 233 129 4 28 259 228 452 1.80e-45 164
Msa0430350 MtrunA17_Chr1g0204031 39.506 243 132 7 26 260 551 786 2.72e-45 163
Msa0430350 MtrunA17_Chr1g0202371 38.696 230 132 5 29 255 397 620 4.17e-45 162
Msa0430350 MtrunA17_Chr5g0397121 36.047 258 150 6 26 277 507 755 4.52e-45 162
Msa0430350 MtrunA17_Chr3g0127431 37.295 244 145 4 15 255 70 308 5.86e-45 157
Msa0430350 MtrunA17_Chr2g0321241 39.485 233 126 10 21 248 125 347 9.72e-45 157
Msa0430350 MtrunA17_Chr6g0459561 36.111 252 148 8 11 257 365 608 1.49e-44 160
Msa0430350 MtrunA17_Chr4g0026631 37.705 244 138 9 21 259 120 354 1.96e-44 156
Msa0430350 MtrunA17_Chr8g0387641 35.827 254 151 5 28 278 520 764 2.55e-44 160
Msa0430350 MtrunA17_Chr2g0327231 44.643 168 93 0 22 189 339 506 1.40e-43 155
Msa0430350 MtrunA17_Chr2g0327231 45.556 90 45 1 29 118 153 238 4.13e-19 87.0
Msa0430350 MtrunA17_Chr4g0038101 37.288 236 137 6 26 255 716 946 1.99e-43 158
Msa0430350 MtrunA17_Chr1g0195741 36.797 231 137 5 29 255 938 1163 9.94e-43 156
Msa0430350 MtrunA17_Chr1g0195731 37.118 229 139 4 29 255 934 1159 1.08e-42 156
Msa0430350 MtrunA17_Chr7g0246111 39.744 234 126 7 28 255 211 435 2.52e-42 152
Msa0430350 MtrunA17_Chr3g0116131 36.889 225 133 5 29 249 902 1121 7.60e-42 154
Msa0430350 MtrunA17_Chr6g0462581 38.397 237 132 8 26 255 494 723 1.24e-41 152
Msa0430350 MtrunA17_Chr1g0202381 37.815 238 133 7 26 255 462 692 1.47e-41 152
Msa0430350 MtrunA17_Chr5g0432641 37.719 228 135 3 32 259 194 414 8.29e-41 149
Msa0430350 MtrunA17_Chr3g0086411 35.918 245 136 4 28 254 214 455 2.20e-40 146
Msa0430350 MtrunA17_Chr3g0086411 33.750 160 97 3 117 267 7 166 7.78e-18 83.2
Msa0430350 MtrunA17_Chr6g0459541 32.117 274 150 8 11 255 25 291 1.94e-38 138
Msa0430350 MtrunA17_Chr3g0086401 37.247 247 132 4 28 254 384 627 3.57e-38 142
Msa0430350 MtrunA17_Chr3g0086401 39.151 212 111 6 41 242 106 309 4.82e-34 130
Msa0430350 MtrunA17_Chr8g0357301 34.694 245 146 4 37 272 477 716 3.74e-38 143
Msa0430350 MtrunA17_Chr3g0135781 44.512 164 87 2 28 191 54 213 1.07e-37 132
Msa0430350 MtrunA17_Chr4g0047411 33.579 271 158 7 20 274 166 430 1.10e-36 138
Msa0430350 MtrunA17_Chr2g0289231 36.910 233 130 6 29 252 297 521 9.06e-35 132
Msa0430350 MtrunA17_Chr1g0168321 40.936 171 98 2 106 273 203 373 9.55e-32 123
Msa0430350 MtrunA17_Chr6g0459551 32.759 232 141 7 11 238 85 305 3.68e-30 117
Msa0430350 MtrunA17_Chr5g0432391 32.955 176 114 2 107 282 81 252 5.99e-26 106
Msa0430350 MtrunA17_Chr1g0190401 30.918 207 138 2 30 235 681 883 2.49e-24 102
Msa0430350 MtrunA17_Chr4g0062081 53.165 79 36 1 32 109 10 88 1.03e-23 92.8
Msa0430350 MtrunA17_Chr6g0459531 26.333 300 168 11 11 290 50 316 1.85e-21 92.4
Msa0430350 MtrunA17_Chr5g0404651 36.810 163 84 7 46 200 231 382 5.72e-16 77.8
Msa0430350 MtrunA17_Chr6g0450161 33.553 152 93 5 65 215 362 506 1.76e-15 76.6
Msa0430350 MtrunA17_Chr2g0315911 26.690 281 184 9 19 290 190 457 1.85e-15 76.3
Msa0430350 MtrunA17_Chr5g0404291 35.172 145 86 5 65 208 387 524 1.60e-14 73.6
Msa0430350 MtrunA17_Chr4g0039781 32.237 152 95 5 65 215 368 512 5.40e-14 72.0
Msa0430350 MtrunA17_Chr2g0315971 31.414 191 116 7 42 226 484 665 6.31e-14 72.0
Msa0430350 MtrunA17_Chr2g0315971 30.952 168 103 5 42 204 208 367 7.31e-14 71.6
Msa0430350 MtrunA17_Chr2g0315921 31.977 172 101 7 56 222 236 396 2.63e-13 69.7
Msa0430350 MtrunA17_Chr6g0452361 31.053 190 114 7 56 238 21 200 6.92e-13 67.4
Msa0430350 MtrunA17_Chr2g0316041 29.787 188 116 7 42 222 153 331 2.15e-12 67.0
Msa0430350 MtrunA17_Chr8g0372701 32.828 198 98 11 46 226 239 418 6.11e-12 65.9
Msa0430350 MtrunA17_Chr2g0315981 26.022 269 181 8 29 292 202 457 1.92e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430350 AT1G45000.1 96.575 292 10 0 1 292 108 399 0.0 583
Msa0430350 AT5G43010.1 96.575 292 10 0 1 292 108 399 0.0 582
Msa0430350 AT1G45000.2 66.096 292 35 4 1 292 108 335 7.74e-124 357
Msa0430350 AT1G53750.1 52.347 277 131 1 10 285 146 422 1.15e-106 317
Msa0430350 AT1G53780.1 51.613 279 134 1 10 287 318 596 5.28e-100 305
Msa0430350 AT1G53780.4 51.613 279 134 1 10 287 318 596 5.28e-100 305
Msa0430350 AT1G53780.3 51.613 279 134 1 10 287 317 595 5.79e-100 305
Msa0430350 AT5G19990.2 54.887 266 119 1 9 273 80 345 6.90e-100 297
Msa0430350 AT1G53780.2 51.246 281 136 1 10 289 339 619 7.54e-100 305
Msa0430350 AT5G19990.1 54.887 266 119 1 9 273 138 403 2.73e-99 298
Msa0430350 AT5G19990.3 54.887 266 119 1 9 273 138 403 2.73e-99 298
Msa0430350 AT5G20000.1 55.094 265 118 1 10 273 139 403 3.47e-99 297
Msa0430350 AT4G29040.1 51.449 276 134 0 3 278 159 434 5.66e-96 290
Msa0430350 AT2G20140.1 51.449 276 134 0 3 278 159 434 6.44e-96 290
Msa0430350 AT3G05530.1 49.286 280 141 1 6 285 145 423 2.69e-94 285
Msa0430350 AT1G09100.1 49.286 280 141 1 6 285 144 422 8.59e-94 284
Msa0430350 AT5G58290.1 47.744 266 139 0 6 271 129 394 3.80e-89 271
Msa0430350 AT3G53230.1 44.348 230 124 2 28 255 477 704 7.50e-62 209
Msa0430350 AT3G53230.1 43.882 237 130 2 29 265 205 438 3.44e-58 199
Msa0430350 AT5G03340.1 44.783 230 123 2 28 255 476 703 9.57e-62 209
Msa0430350 AT5G03340.1 43.882 237 130 2 29 265 204 437 4.87e-59 202
Msa0430350 AT3G09840.1 42.578 256 138 4 28 280 476 725 8.71e-60 204
Msa0430350 AT3G09840.1 43.697 238 131 2 28 265 203 437 4.02e-59 202
Msa0430350 AT5G42270.1 40.000 245 146 1 29 273 247 490 2.26e-57 196
Msa0430350 AT1G50250.1 39.184 245 148 1 29 273 259 502 3.52e-56 192
Msa0430350 AT4G23940.1 40.551 254 142 3 29 274 427 679 5.53e-55 191
Msa0430350 AT2G30950.4 38.367 245 150 1 29 273 228 471 1.70e-54 188
Msa0430350 AT2G30950.1 38.367 245 150 1 29 273 224 467 1.92e-54 187
Msa0430350 AT2G30950.2 38.367 245 150 1 29 273 224 467 1.92e-54 187
Msa0430350 AT2G30950.3 38.367 245 150 1 29 273 224 467 1.92e-54 187
Msa0430350 AT3G47060.1 40.000 250 142 4 28 272 321 567 5.27e-54 187
Msa0430350 AT3G16290.1 40.164 244 145 1 28 271 406 648 2.19e-53 186
Msa0430350 AT1G06430.1 40.088 227 135 1 29 255 217 442 5.56e-53 184
Msa0430350 AT1G06430.3 40.088 227 135 1 29 255 217 442 5.56e-53 184
Msa0430350 AT1G06430.2 40.088 227 135 1 29 255 217 442 5.56e-53 184
Msa0430350 AT5G58870.1 39.921 253 144 4 25 272 322 571 6.05e-53 185
Msa0430350 AT3G56690.1 41.228 228 129 2 29 254 721 945 9.17e-53 185
Msa0430350 AT3G56690.1 40.870 230 129 4 32 259 385 609 1.04e-43 159
Msa0430350 AT5G15250.1 40.773 233 137 1 29 261 221 452 7.13e-52 181
Msa0430350 AT5G53170.1 43.556 225 120 3 30 253 360 578 2.33e-51 180
Msa0430350 AT3G02450.1 42.857 217 119 2 58 272 359 572 5.78e-50 174
Msa0430350 AT2G34560.1 35.600 250 151 4 28 270 99 345 1.49e-49 169
Msa0430350 AT2G34560.2 36.327 245 146 4 28 265 108 349 2.18e-49 168
Msa0430350 AT2G26140.1 40.928 237 131 3 22 253 212 444 4.01e-49 173
Msa0430350 AT5G64580.1 39.689 257 144 5 24 272 308 561 1.12e-48 173
Msa0430350 AT1G05910.1 40.000 250 139 4 28 270 377 622 2.51e-48 172
Msa0430350 AT5G15250.2 37.109 256 137 2 29 261 221 475 4.01e-48 168
Msa0430350 AT1G80350.1 36.424 302 153 10 20 290 228 521 7.65e-48 167
Msa0430350 AT5G53540.1 39.834 241 134 5 18 255 76 308 7.87e-48 164
Msa0430350 AT5G08470.1 35.106 282 155 3 6 265 796 1071 8.17e-48 171
Msa0430350 AT5G08470.3 35.106 282 155 3 6 265 787 1062 8.38e-48 171
Msa0430350 AT1G07510.1 40.726 248 143 3 29 273 324 570 1.27e-47 170
Msa0430350 AT2G29080.1 40.891 247 143 2 29 273 319 564 3.68e-47 169
Msa0430350 AT4G27680.1 38.115 244 143 4 15 255 67 305 2.40e-46 160
Msa0430350 AT2G03670.1 33.206 262 172 2 29 287 283 544 2.42e-46 164
Msa0430350 AT2G03670.1 35.341 249 151 4 27 266 14 261 7.98e-42 152
Msa0430350 AT3G01610.1 39.662 237 128 3 30 255 231 463 2.59e-46 166
Msa0430350 AT3G01610.1 40.175 229 130 5 28 254 524 747 1.58e-42 155
Msa0430350 AT3G01610.2 39.662 237 128 3 30 255 231 463 2.94e-46 166
Msa0430350 AT3G01610.2 40.175 229 130 5 28 254 524 747 1.80e-42 155
Msa0430350 AT1G03000.1 38.095 231 138 5 28 255 654 882 1.01e-44 162
Msa0430350 AT1G50140.2 37.712 236 136 6 26 255 684 914 6.20e-44 160
Msa0430350 AT1G50140.5 37.712 236 136 6 26 255 684 914 6.20e-44 160
Msa0430350 AT2G27600.1 38.017 242 140 8 21 259 122 356 6.35e-44 155
Msa0430350 AT1G50140.3 37.712 236 136 6 26 255 706 936 6.47e-44 160
Msa0430350 AT1G50140.1 37.712 236 136 6 26 255 706 936 6.47e-44 160
Msa0430350 AT1G50140.4 37.712 236 136 6 26 255 706 936 6.47e-44 160
Msa0430350 AT3G15120.2 36.585 246 143 5 31 269 728 967 1.89e-43 159
Msa0430350 AT3G15120.1 36.585 246 143 5 31 269 718 957 1.92e-43 159
Msa0430350 AT3G27120.1 35.600 250 148 8 11 255 383 624 3.22e-43 157
Msa0430350 AT1G02890.1 38.095 231 134 5 29 255 941 1166 4.43e-43 157
Msa0430350 AT2G45500.4 35.315 286 150 11 28 290 79 352 6.12e-43 150
Msa0430350 AT2G45500.3 35.315 286 150 11 28 290 79 352 6.12e-43 150
Msa0430350 AT2G03670.2 35.341 249 151 4 27 266 14 261 8.41e-43 152
Msa0430350 AT2G03670.2 36.170 141 89 1 29 168 283 423 5.31e-24 101
Msa0430350 AT1G64110.5 36.803 269 153 9 28 292 515 770 1.28e-42 156
Msa0430350 AT1G64110.3 36.803 269 153 9 28 292 515 770 1.28e-42 156
Msa0430350 AT1G64110.2 36.803 269 153 9 28 292 517 772 1.34e-42 156
Msa0430350 AT1G64110.4 36.803 269 153 9 28 292 517 772 1.34e-42 156
Msa0430350 AT1G64110.1 36.803 269 153 9 28 292 512 767 1.44e-42 155
Msa0430350 AT4G02480.1 37.555 229 138 4 29 255 960 1185 4.35e-42 155
Msa0430350 AT2G45500.1 35.315 286 150 11 28 290 216 489 1.10e-41 150
Msa0430350 AT2G45500.2 35.315 286 150 11 28 290 212 485 1.16e-41 150
Msa0430350 AT2G45500.5 35.315 286 150 11 28 290 222 495 1.70e-41 150
Msa0430350 AT4G28000.1 35.249 261 151 8 26 278 509 759 2.11e-41 152
Msa0430350 AT4G28000.3 35.249 261 151 8 26 278 511 761 2.30e-41 152
Msa0430350 AT4G28000.2 35.249 261 151 8 26 278 511 761 2.31e-41 152
Msa0430350 AT3G19740.1 36.017 236 140 6 26 255 696 926 4.96e-41 152
Msa0430350 AT4G24860.1 36.207 232 139 5 28 255 816 1042 2.60e-40 149
Msa0430350 AT4G24860.3 36.207 232 139 5 28 255 814 1040 2.62e-40 149
Msa0430350 AT4G24860.2 36.207 232 139 5 28 255 812 1038 3.33e-40 149
Msa0430350 AT4G24860.4 36.207 232 139 5 28 255 789 1015 3.61e-40 149
Msa0430350 AT5G52882.1 36.328 256 148 8 26 275 508 754 7.39e-40 148
Msa0430350 AT1G79560.2 34.201 269 152 4 37 285 497 760 1.09e-38 145
Msa0430350 AT1G79560.3 34.201 269 152 4 37 285 497 760 1.11e-38 145
Msa0430350 AT1G79560.1 34.201 269 152 4 37 285 497 760 1.24e-38 145
Msa0430350 AT4G04910.1 32.168 286 162 7 20 276 203 485 7.97e-37 139
Msa0430350 AT4G04180.2 39.130 230 123 6 29 249 311 532 5.10e-35 133
Msa0430350 AT4G04180.1 39.130 230 123 6 29 249 316 537 5.82e-35 133
Msa0430350 AT1G62130.1 30.894 246 144 6 29 264 750 979 2.87e-30 120
Msa0430350 AT1G62130.2 30.894 246 144 6 29 264 743 972 3.12e-30 120
Msa0430350 AT1G02890.2 34.199 231 115 6 29 255 941 1138 4.61e-30 120
Msa0430350 AT5G08470.2 32.308 195 107 2 6 178 796 987 1.19e-24 104
Msa0430350 AT3G04340.1 36.420 162 102 1 52 212 803 964 1.19e-23 101
Msa0430350 AT2G18330.1 34.247 146 88 5 65 209 384 522 1.32e-14 74.3
Msa0430350 AT5G16930.1 30.412 194 121 8 27 215 357 541 3.64e-14 73.2
Msa0430350 AT2G18193.1 32.927 164 97 5 42 200 219 374 4.87e-14 72.4
Msa0430350 AT3G03060.1 31.579 152 96 5 65 215 385 529 1.23e-13 71.6
Msa0430350 AT4G36580.1 32.877 146 90 5 65 209 381 519 4.66e-13 69.7
Msa0430350 AT2G18190.1 31.156 199 97 7 16 200 206 378 3.28e-12 67.0
Msa0430350 AT5G17730.1 35.762 151 83 6 56 200 235 377 9.83e-12 65.5
Msa0430350 AT3G50940.1 33.133 166 94 6 42 200 223 378 1.74e-11 64.7
Msa0430350 AT5G40000.1 31.447 159 88 6 56 201 231 381 2.15e-11 64.3
Msa0430350 AT3G50930.1 29.121 182 110 6 30 200 263 436 5.28e-11 63.5

Find 86 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAGGGTGTTCTCCTTTA+TGG 0.093291 3_2:+82153019 Msa0430350:intron
GCACACTACAATGCTGATTT+TGG 0.166045 3_2:+82154708 Msa0430350:CDS
TCCAATGTACTTATCAATTA+TGG 0.190993 3_2:-82153213 None:intergenic
TTCAGGGTGTTCTCCTTTAT+GGG 0.205114 3_2:+82153020 Msa0430350:intron
CTCAGAGCCATGGATGTTTA+TGG 0.223405 3_2:+82154757 Msa0430350:three_prime_UTR
CAAAATTGTCAGGGGTTTAA+TGG 0.239298 3_2:+82154465 Msa0430350:intron
AAACTTGGCTGAGGTATTTC+TGG 0.278084 3_2:-82154796 None:intergenic
TCCATCCTCGATTGTTCATT+TGG 0.279398 3_2:-82154301 None:intergenic
TGAGATTCAGAGAACGTTAA+TGG 0.286158 3_2:+82153444 Msa0430350:CDS
GAAGTTAGCATCTATATTAC+TGG 0.300744 3_2:-82153083 None:intergenic
CAGCTTCAGTGCACACATTT+CGG 0.314090 3_2:-82154497 None:intergenic
AATCATCGAGTTAAGCATTA+TGG 0.336788 3_2:+82154823 Msa0430350:three_prime_UTR
CTTGATGGCTTTGATCAACT+TGG 0.337954 3_2:+82153481 Msa0430350:CDS
GAGCTGCTTAATCAACTTGA+TGG 0.364985 3_2:+82153466 Msa0430350:CDS
GGTTAATTAGAGAGATGTTT+GGG 0.391291 3_2:+82153246 Msa0430350:CDS
ACGAGGAAGAGCCCGCATTA+TGG 0.402274 3_2:-82151906 None:intergenic
CCTTTATGGGCCTCCTGGTA+CGG 0.402765 3_2:+82153033 Msa0430350:CDS
GTGGTTTATCTGATCAGATC+AGG 0.404868 3_2:+82152149 Msa0430350:CDS
CCTGAGCTCTTTCTTAGAGT+TGG 0.404934 3_2:+82152208 Msa0430350:CDS
CGAAATGTGTGCACTGAAGC+TGG 0.406372 3_2:+82154498 Msa0430350:CDS
AGCAGAGTAACTAATATTAC+CGG 0.407884 3_2:-82152122 None:intergenic
TGCAACATATTGTACACAAC+TGG 0.415415 3_2:-82152091 None:intergenic
GTTCTCCTTTATGGGCCTCC+TGG 0.416124 3_2:+82153028 Msa0430350:CDS
TACTTTGGTACCAGGCTGTA+AGG 0.428624 3_2:+82154652 Msa0430350:intron
ACTCGATGATTTGACAAACT+TGG 0.432155 3_2:-82154811 None:intergenic
AGGTTAATTAGAGAGATGTT+TGG 0.434118 3_2:+82153245 Msa0430350:CDS
CGGGTAAAACATTGTTGGCT+AGG 0.437652 3_2:+82153053 Msa0430350:CDS
AGAGCAGGGTCAAGTACATC+AGG 0.451101 3_2:-82154235 None:intergenic
CCCATATTAAAACTAGAATC+TGG 0.451876 3_2:-82154874 None:intergenic
CTTCCAGGACGTAGGAGAGC+AGG 0.453187 3_2:-82154250 None:intergenic
ATTAGTTACTCTGCTGTTGG+TGG 0.454165 3_2:+82152130 Msa0430350:CDS
AAGAGCTCAGGATTCATTAG+AGG 0.454617 3_2:-82152196 None:intergenic
TAAGCATTATGGCAGCCGTC+CGG 0.460975 3_2:+82154834 Msa0430350:three_prime_UTR
CTCGATTGTTCATTTGGCAA+TGG 0.462098 3_2:-82154295 None:intergenic
CTGATCAGATCAGGGAATTG+AGG 0.465892 3_2:+82152158 Msa0430350:CDS
CCGTACCAGGAGGCCCATAA+AGG 0.466426 3_2:-82153033 None:intergenic
TCTCCTACGTCCTGGAAGAT+TGG 0.473304 3_2:+82154255 Msa0430350:CDS
TGATCAGATCAGGGAATTGA+GGG 0.474976 3_2:+82152159 Msa0430350:CDS
CTTTATGGGCCTCCTGGTAC+GGG 0.478620 3_2:+82153034 Msa0430350:CDS
AAGCATTATGGCAGCCGTCC+GGG 0.486326 3_2:+82154835 Msa0430350:three_prime_UTR
ATTCTTAAGATCCATGCTGC+TGG 0.497593 3_2:+82154325 Msa0430350:CDS
GGATAGTACATGCCATTGCC+CGG 0.506832 3_2:-82154853 None:intergenic
TATGGCAGCCGTCCGGGCAA+TGG 0.509453 3_2:+82154841 Msa0430350:three_prime_UTR
AGTACATTGGAGAAAGTGCC+AGG 0.511018 3_2:+82153225 Msa0430350:CDS
GTTGTAGGTTAAAATGATCA+TGG 0.511658 3_2:+82154201 Msa0430350:intron
AATATTAGTTACTCTGCTGT+TGG 0.513513 3_2:+82152127 Msa0430350:CDS
ACTGAAACGGCGACCACCAA+TGG 0.525549 3_2:-82153401 None:intergenic
GCCATAATTGATAAGTACAT+TGG 0.529655 3_2:+82153212 Msa0430350:CDS
TATAGATGCTAACTTCCTAA+AGG 0.531647 3_2:+82153090 Msa0430350:CDS
GGTGGTCGCCGTTTCAGTGA+GGG 0.532776 3_2:+82153406 Msa0430350:CDS
CACTTGTTCCCTCACTGAAA+CGG 0.538183 3_2:-82153414 None:intergenic
ATACCTTCATAAAATCTTCG+TGG 0.538695 3_2:-82154557 None:intergenic
GGAACTTGGCGAACGTAAAG+AGG 0.539825 3_2:+82154895 Msa0430350:three_prime_UTR
GACCCTGCTCTCCTACGTCC+TGG 0.540855 3_2:+82154247 Msa0430350:CDS
TGGCTTTGATCAACTTGGAA+AGG 0.541904 3_2:+82153486 Msa0430350:CDS
GACAACACTCACCATAATGC+GGG 0.561526 3_2:+82151895 Msa0430350:CDS
ATGGATGAGATCGATGCCAT+TGG 0.561839 3_2:+82153385 Msa0430350:CDS
AGTTGGAATTAAACCTCCCA+AGG 0.562840 3_2:+82152225 Msa0430350:CDS
TTGTGAAATTCTCAGAGCCA+TGG 0.563523 3_2:+82154747 Msa0430350:three_prime_UTR
TGGTACGGGTAAAACATTGT+TGG 0.568472 3_2:+82153048 Msa0430350:CDS
AGTACATGCCATTGCCCGGA+CGG 0.573872 3_2:-82154849 None:intergenic
CTCTGATAACTTACTTCACG+AGG 0.574369 3_2:-82151923 None:intergenic
CCAACTCTAAGAAAGAGCTC+AGG 0.578764 3_2:-82152208 None:intergenic
TGATTTGACAAACTTGGCTG+AGG 0.578779 3_2:-82154805 None:intergenic
TGGGTATGCACGTGATCACC+AGG 0.579889 3_2:+82153265 Msa0430350:CDS
GGGTAAAACATTGTTGGCTA+GGG 0.581451 3_2:+82153054 Msa0430350:CDS
GCCAAATGAACAATCGAGGA+TGG 0.587953 3_2:+82154300 Msa0430350:CDS
TTCCAGGACGTAGGAGAGCA+GGG 0.588103 3_2:-82154249 None:intergenic
GATGAGATCGATGCCATTGG+TGG 0.588964 3_2:+82153388 Msa0430350:CDS
GCTTAGCAATTCCAGCAGCA+TGG 0.593716 3_2:-82154336 None:intergenic
GGCTGTAAGGAAATTGAATG+AGG 0.596802 3_2:+82154665 Msa0430350:intron
TGGTTTATCTGATCAGATCA+GGG 0.600189 3_2:+82152150 Msa0430350:CDS
TGCACTGCCATAAACATCCA+TGG 0.606653 3_2:-82154764 None:intergenic
GAAAAGTTGATTACCTTGGG+AGG 0.627342 3_2:-82152238 None:intergenic
AATATGTTGCATGAAGATCC+CGG 0.628998 3_2:+82152103 Msa0430350:CDS
TGACAACACTCACCATAATG+CGG 0.639866 3_2:+82151894 Msa0430350:CDS
AAACATCTCTCTAATTAACC+TGG 0.642963 3_2:-82153243 None:intergenic
TGGTGGTCGCCGTTTCAGTG+AGG 0.645352 3_2:+82153405 Msa0430350:CDS
GCTGCTGGAATTGCTAAGCA+TGG 0.645633 3_2:+82154340 Msa0430350:CDS
CATTGCCAAATGAACAATCG+AGG 0.663453 3_2:+82154296 Msa0430350:CDS
GCAGAGTAACTAATATTACC+GGG 0.676463 3_2:-82152121 None:intergenic
TATCCAATCTTCCAGGACGT+AGG 0.685964 3_2:-82154258 None:intergenic
CAGGGTCAAGTACATCAGGT+CGG 0.686390 3_2:-82154231 None:intergenic
TGAAGCGGTTGTGAAGCTTG+CGG 0.692552 3_2:+82154375 Msa0430350:CDS
TGGTGAAATAGACTATGAAG+CGG 0.697649 3_2:+82154360 Msa0430350:CDS
AGCGGTTGTGAAGCTTGCGG+AGG 0.703737 3_2:+82154378 Msa0430350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGAATAACATTATAAAA+AGG + chr3_2:82152742-82152761 Msa0430350:intron 10.0%
!!! TGAAAATAAAAAAGTATGAA+AGG - chr3_2:82152285-82152304 None:intergenic 15.0%
!!! TTTCATACTTTTTTATTTTC+AGG + chr3_2:82152284-82152303 Msa0430350:intron 15.0%
!!! ATCATTTTAATTATTTCAGA+CGG + chr3_2:82152352-82152371 Msa0430350:intron 15.0%
!!! AGATTTGACTTTTTTAATTA+GGG + chr3_2:82152525-82152544 Msa0430350:intron 15.0%
!! AAATAAAATTGTTTAGATGA+AGG + chr3_2:82152775-82152794 Msa0430350:intron 15.0%
!! AATAAAATTGTTTAGATGAA+GGG + chr3_2:82152776-82152795 Msa0430350:intron 15.0%
!!! CTTTTATACTAATCTATAAA+GGG - chr3_2:82152840-82152859 None:intergenic 15.0%
!! AAATGTTAAAGTTAAAAGTA+TGG - chr3_2:82152977-82152996 None:intergenic 15.0%
!! ATTTGATTATATAAACCTAT+AGG - chr3_2:82153316-82153335 None:intergenic 15.0%
!!! TTCTTTTTTCTAAAAACACT+TGG + chr3_2:82152018-82152037 Msa0430350:intron 20.0%
!! TTGATTTCAAAGATTTGTAT+TGG + chr3_2:82152322-82152341 Msa0430350:intron 20.0%
!!! AAGTCAAATCTCTTTAAAAT+AGG - chr3_2:82152516-82152535 None:intergenic 20.0%
!!! GAGATTTGACTTTTTTAATT+AGG + chr3_2:82152524-82152543 Msa0430350:intron 20.0%
!!! GCTTTTATACTAATCTATAA+AGG - chr3_2:82152841-82152860 None:intergenic 20.0%
!! TTATTTCCAAAATACAAACA+TGG - chr3_2:82153557-82153576 None:intergenic 20.0%
!! ATAGATTTACAAAGAAAAGT+AGG - chr3_2:82153762-82153781 None:intergenic 20.0%
!!! TACTTTTCTTTGTAAATCTA+TGG + chr3_2:82153761-82153780 Msa0430350:intron 20.0%
!!! ATCAACTTTTTTGAAAGATA+TGG + chr3_2:82153997-82154016 Msa0430350:intron 20.0%
!!! TCAACTTTTTTGAAAGATAT+GGG + chr3_2:82153998-82154017 Msa0430350:intron 20.0%
!! TTCTTTTATGTTTTCATTGC+TGG + chr3_2:82151952-82151971 Msa0430350:intron 25.0%
!!! TGTTTTAGTTTGTCTCTTTT+TGG + chr3_2:82151979-82151998 Msa0430350:intron 25.0%
!!! GTTTTAGTTTGTCTCTTTTT+GGG + chr3_2:82151980-82151999 Msa0430350:intron 25.0%
!! ATAAAGGGAATACATCTTTT+CGG - chr3_2:82152825-82152844 None:intergenic 25.0%
! CATTTCAAGATACATTGAAT+AGG - chr3_2:82153135-82153154 None:intergenic 25.0%
! ACAACCTATATTAGAGAAAA+GGG - chr3_2:82153185-82153204 None:intergenic 25.0%
! AACAACCTATATTAGAGAAA+AGG - chr3_2:82153186-82153205 None:intergenic 25.0%
! TCCAATGTACTTATCAATTA+TGG - chr3_2:82153216-82153235 None:intergenic 25.0%
! ATCTTATAACAAATTCCTCA+TGG + chr3_2:82153583-82153602 Msa0430350:intron 25.0%
! TTACAAAGAAAAGTAGGTAT+TGG - chr3_2:82153756-82153775 None:intergenic 25.0%
! AACCATTTCTGACAATTTAT+GGG - chr3_2:82153791-82153810 None:intergenic 25.0%
! GATATGGAATTTAATTGTAG+AGG - chr3_2:82153828-82153847 None:intergenic 25.0%
! TTTGAACTTCACAAAAGAAA+AGG - chr3_2:82153977-82153996 None:intergenic 25.0%
!!! TATCATTGATGTAGTCTTAT+CGG + chr3_2:82154093-82154112 Msa0430350:intron 25.0%
! TCATAGACAAATCAATACAA+AGG - chr3_2:82154608-82154627 None:intergenic 25.0%
! AAAGTAAAAGAGATACAGTA+AGG - chr3_2:82154638-82154657 None:intergenic 25.0%
!! TTACTGTATCTCTTTTACTT+TGG + chr3_2:82154637-82154656 Msa0430350:intron 25.0%
!!! TCCAGATTCTAGTTTTAATA+TGG + chr3_2:82154873-82154892 Msa0430350:three_prime_UTR 25.0%
!!! CCAGATTCTAGTTTTAATAT+GGG + chr3_2:82154874-82154893 Msa0430350:three_prime_UTR 25.0%
AGCAGAGTAACTAATATTAC+CGG - chr3_2:82152125-82152144 None:intergenic 30.0%
AATATTAGTTACTCTGCTGT+TGG + chr3_2:82152127-82152146 Msa0430350:CDS 30.0%
!! TTTCTTAATTTGTGCCCTAA+GGG + chr3_2:82152689-82152708 Msa0430350:intron 30.0%
GTTTAGATGAAGGGTAAATT+TGG + chr3_2:82152785-82152804 Msa0430350:intron 30.0%
CAGAAACATTGAAAACAACA+TGG + chr3_2:82152881-82152900 Msa0430350:intron 30.0%
GAAGTTAGCATCTATATTAC+TGG - chr3_2:82153086-82153105 None:intergenic 30.0%
TATAGATGCTAACTTCCTAA+AGG + chr3_2:82153090-82153109 Msa0430350:CDS 30.0%
! CATTCCCTTTTCTCTAATAT+AGG + chr3_2:82153178-82153197 Msa0430350:intron 30.0%
GCCATAATTGATAAGTACAT+TGG + chr3_2:82153212-82153231 Msa0430350:CDS 30.0%
AAACATCTCTCTAATTAACC+TGG - chr3_2:82153246-82153265 None:intergenic 30.0%
AGGTTAATTAGAGAGATGTT+TGG + chr3_2:82153245-82153264 Msa0430350:CDS 30.0%
GGTTAATTAGAGAGATGTTT+GGG + chr3_2:82153246-82153265 Msa0430350:CDS 30.0%
CTAAACACAAAAATATCACC+TGG - chr3_2:82153286-82153305 None:intergenic 30.0%
!! TTAGCCATGCATCATTTTTA+TGG + chr3_2:82153366-82153385 Msa0430350:intron 30.0%
TCATCCATAAAAATGATGCA+TGG - chr3_2:82153373-82153392 None:intergenic 30.0%
TTTCCAAAATACAAACATGG+TGG - chr3_2:82153554-82153573 None:intergenic 30.0%
TTATAACAAATTCCTCATGG+TGG + chr3_2:82153586-82153605 Msa0430350:intron 30.0%
TCACAAAAGTTGTCACAAAA+TGG - chr3_2:82153671-82153690 None:intergenic 30.0%
CAACCATTTCTGACAATTTA+TGG - chr3_2:82153792-82153811 None:intergenic 30.0%
TCTTTGAACTTTCAAAGATG+CGG + chr3_2:82153897-82153916 Msa0430350:intron 30.0%
TTGAACAAAAACATCAATCG+CGG - chr3_2:82154121-82154140 None:intergenic 30.0%
AAGTCATAATCAATCAACCA+TGG - chr3_2:82154165-82154184 None:intergenic 30.0%
GTTGTAGGTTAAAATGATCA+TGG + chr3_2:82154201-82154220 Msa0430350:intron 30.0%
! ATTTTTCTATCCAATCTTCC+AGG - chr3_2:82154268-82154287 None:intergenic 30.0%
TTATCTGTTGCAAAATTGTC+AGG + chr3_2:82154455-82154474 Msa0430350:intron 30.0%
TATCTGTTGCAAAATTGTCA+GGG + chr3_2:82154456-82154475 Msa0430350:intron 30.0%
ATACCTTCATAAAATCTTCG+TGG - chr3_2:82154560-82154579 None:intergenic 30.0%
AATCATCGAGTTAAGCATTA+TGG + chr3_2:82154823-82154842 Msa0430350:three_prime_UTR 30.0%
CCCATATTAAAACTAGAATC+TGG - chr3_2:82154877-82154896 None:intergenic 30.0%
!!! CTAGTTTTAATATGGGAACT+TGG + chr3_2:82154881-82154900 Msa0430350:three_prime_UTR 30.0%
! TTTCTATCGATTGTGTTGCT+AGG + chr3_2:82152063-82152082 Msa0430350:intron 35.0%
TGCAACATATTGTACACAAC+TGG - chr3_2:82152094-82152113 None:intergenic 35.0%
AATATGTTGCATGAAGATCC+CGG + chr3_2:82152103-82152122 Msa0430350:CDS 35.0%
GCAGAGTAACTAATATTACC+GGG - chr3_2:82152124-82152143 None:intergenic 35.0%
TGGTTTATCTGATCAGATCA+GGG + chr3_2:82152150-82152169 Msa0430350:CDS 35.0%
! GGTGAAAAGTTGATTACCTT+GGG - chr3_2:82152244-82152263 None:intergenic 35.0%
! TGGTGAAAAGTTGATTACCT+TGG - chr3_2:82152245-82152264 None:intergenic 35.0%
AAGTATGAAAGGACAGATAC+TGG - chr3_2:82152274-82152293 None:intergenic 35.0%
CAATTAGTGCAGTAGAAAAG+CGG - chr3_2:82152404-82152423 None:intergenic 35.0%
TAAAAGAGACATCAATCGTG+TGG + chr3_2:82152434-82152453 Msa0430350:intron 35.0%
CACTACAATAGAAACACTAG+TGG - chr3_2:82152485-82152504 None:intergenic 35.0%
!! GTTTCTTAATTTGTGCCCTA+AGG + chr3_2:82152688-82152707 Msa0430350:intron 35.0%
TCTTCTATTCCTCATCTTTC+AGG + chr3_2:82153003-82153022 Msa0430350:intron 35.0%
CTTCTATTCCTCATCTTTCA+GGG + chr3_2:82153004-82153023 Msa0430350:intron 35.0%
GTGTTTAGTTGTCTTCCTAT+AGG + chr3_2:82153298-82153317 Msa0430350:intron 35.0%
TGAGATTCAGAGAACGTTAA+TGG + chr3_2:82153444-82153463 Msa0430350:CDS 35.0%
! TAGCCACCATGTTTGTATTT+TGG + chr3_2:82153548-82153567 Msa0430350:intron 35.0%
!! ACTTTTTCTCTCTGTTGCTT+TGG + chr3_2:82153722-82153741 Msa0430350:intron 35.0%
GTCCCATAAATTGTCAGAAA+TGG + chr3_2:82153786-82153805 Msa0430350:intron 35.0%
TGGTGAAATAGACTATGAAG+CGG + chr3_2:82154360-82154379 Msa0430350:CDS 35.0%
ATCTGTTGCAAAATTGTCAG+GGG + chr3_2:82154457-82154476 Msa0430350:intron 35.0%
CAAAATTGTCAGGGGTTTAA+TGG + chr3_2:82154465-82154484 Msa0430350:intron 35.0%
! GATCCACGAAGATTTTATGA+AGG + chr3_2:82154554-82154573 Msa0430350:CDS 35.0%
! TGAAGGTATGCTCTTTGTTT+AGG + chr3_2:82154571-82154590 Msa0430350:intron 35.0%
! ATCTCTTTTACTTTGGTACC+AGG + chr3_2:82154644-82154663 Msa0430350:intron 35.0%
ACTCGATGATTTGACAAACT+TGG - chr3_2:82154814-82154833 None:intergenic 35.0%
TGACAACACTCACCATAATG+CGG + chr3_2:82151894-82151913 Msa0430350:CDS 40.0%
CTCTGATAACTTACTTCACG+AGG - chr3_2:82151926-82151945 None:intergenic 40.0%
ATTAGTTACTCTGCTGTTGG+TGG + chr3_2:82152130-82152149 Msa0430350:CDS 40.0%
GTGGTTTATCTGATCAGATC+AGG + chr3_2:82152149-82152168 Msa0430350:CDS 40.0%
TGATCAGATCAGGGAATTGA+GGG + chr3_2:82152159-82152178 Msa0430350:CDS 40.0%
AAGAGCTCAGGATTCATTAG+AGG - chr3_2:82152199-82152218 None:intergenic 40.0%
AGTTGGAATTAAACCTCCCA+AGG + chr3_2:82152225-82152244 Msa0430350:CDS 40.0%
! GAAAAGTTGATTACCTTGGG+AGG - chr3_2:82152241-82152260 None:intergenic 40.0%
!! AAATGTTAACTTGTGCCCCT+TGG + chr3_2:82152548-82152567 Msa0430350:intron 40.0%
!! AATGTTAACTTGTGCCCCTT+GGG + chr3_2:82152549-82152568 Msa0430350:intron 40.0%
! TTTTTAAACCTGTGCCCCAA+GGG - chr3_2:82152567-82152586 None:intergenic 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG - chr3_2:82152706-82152725 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG - chr3_2:82152707-82152726 None:intergenic 40.0%
! TTTCAGGGTGTTCTCCTTTA+TGG + chr3_2:82153019-82153038 Msa0430350:intron 40.0%
! TTCAGGGTGTTCTCCTTTAT+GGG + chr3_2:82153020-82153039 Msa0430350:intron 40.0%
! AACAATGTTTTACCCGTACC+AGG - chr3_2:82153049-82153068 None:intergenic 40.0%
TGGTACGGGTAAAACATTGT+TGG + chr3_2:82153048-82153067 Msa0430350:CDS 40.0%
! GGGTAAAACATTGTTGGCTA+GGG + chr3_2:82153054-82153073 Msa0430350:CDS 40.0%
AGATGCATAAGCTGACCTTT+AGG - chr3_2:82153108-82153127 None:intergenic 40.0%
ATGCATGGCTAAGAAAACAG+AGG - chr3_2:82153358-82153377 None:intergenic 40.0%
GAGCTGCTTAATCAACTTGA+TGG + chr3_2:82153466-82153485 Msa0430350:CDS 40.0%
!! CTTGATGGCTTTGATCAACT+TGG + chr3_2:82153481-82153500 Msa0430350:CDS 40.0%
!! TGGCTTTGATCAACTTGGAA+AGG + chr3_2:82153486-82153505 Msa0430350:CDS 40.0%
AACAAATTCCTCATGGTGGT+AGG + chr3_2:82153590-82153609 Msa0430350:intron 40.0%
CCATCTGAGCGTATAAGATA+TGG - chr3_2:82153844-82153863 None:intergenic 40.0%
CCATATCTTATACGCTCAGA+TGG + chr3_2:82153841-82153860 Msa0430350:intron 40.0%
TCAATCAACCATGGAGAGTT+TGG - chr3_2:82154156-82154175 None:intergenic 40.0%
GCTCTCTGAATATCTGTTGT+AGG + chr3_2:82154186-82154205 Msa0430350:intron 40.0%
CTCGATTGTTCATTTGGCAA+TGG - chr3_2:82154298-82154317 None:intergenic 40.0%
CATTGCCAAATGAACAATCG+AGG + chr3_2:82154296-82154315 Msa0430350:CDS 40.0%
TCCATCCTCGATTGTTCATT+TGG - chr3_2:82154304-82154323 None:intergenic 40.0%
ATTCTTAAGATCCATGCTGC+TGG + chr3_2:82154325-82154344 Msa0430350:CDS 40.0%
CATTCAATTTCCTTACAGCC+TGG - chr3_2:82154665-82154684 None:intergenic 40.0%
GGCTGTAAGGAAATTGAATG+AGG + chr3_2:82154665-82154684 Msa0430350:intron 40.0%
!!! GCACACTACAATGCTGATTT+TGG + chr3_2:82154708-82154727 Msa0430350:CDS 40.0%
TTGTGAAATTCTCAGAGCCA+TGG + chr3_2:82154747-82154766 Msa0430350:three_prime_UTR 40.0%
! AAACTTGGCTGAGGTATTTC+TGG - chr3_2:82154799-82154818 None:intergenic 40.0%
TGATTTGACAAACTTGGCTG+AGG - chr3_2:82154808-82154827 None:intergenic 40.0%
GACAACACTCACCATAATGC+GGG + chr3_2:82151895-82151914 Msa0430350:CDS 45.0%
CTGATCAGATCAGGGAATTG+AGG + chr3_2:82152158-82152177 Msa0430350:CDS 45.0%
! CCAACTCTAAGAAAGAGCTC+AGG - chr3_2:82152211-82152230 None:intergenic 45.0%
CCTGAGCTCTTTCTTAGAGT+TGG + chr3_2:82152208-82152227 Msa0430350:CDS 45.0%
AGGACAGATACTGGAAAGTG+TGG - chr3_2:82152265-82152284 None:intergenic 45.0%
!! ATGTTAACTTGTGCCCCTTG+GGG + chr3_2:82152550-82152569 Msa0430350:intron 45.0%
! TTTTAAACCTGTGCCCCAAG+GGG - chr3_2:82152566-82152585 None:intergenic 45.0%
! GTTTTTAAACCTGTGCCCCA+AGG - chr3_2:82152568-82152587 None:intergenic 45.0%
! AGGGAATACATCTTTTCGGC+TGG - chr3_2:82152821-82152840 None:intergenic 45.0%
! AATGTTTTACCCGTACCAGG+AGG - chr3_2:82153046-82153065 None:intergenic 45.0%
! CGGGTAAAACATTGTTGGCT+AGG + chr3_2:82153053-82153072 Msa0430350:CDS 45.0%
!! AGTACATTGGAGAAAGTGCC+AGG + chr3_2:82153225-82153244 Msa0430350:CDS 45.0%
ATGGATGAGATCGATGCCAT+TGG + chr3_2:82153385-82153404 Msa0430350:CDS 45.0%
CACTTGTTCCCTCACTGAAA+CGG - chr3_2:82153417-82153436 None:intergenic 45.0%
CATATACACCTACCACCATG+AGG - chr3_2:82153601-82153620 None:intergenic 45.0%
TATCCAATCTTCCAGGACGT+AGG - chr3_2:82154261-82154280 None:intergenic 45.0%
GCCAAATGAACAATCGAGGA+TGG + chr3_2:82154300-82154319 Msa0430350:CDS 45.0%
CAGCTTCAGTGCACACATTT+CGG - chr3_2:82154500-82154519 None:intergenic 45.0%
TACTTTGGTACCAGGCTGTA+AGG + chr3_2:82154652-82154671 Msa0430350:intron 45.0%
CTCAGAGCCATGGATGTTTA+TGG + chr3_2:82154757-82154776 Msa0430350:three_prime_UTR 45.0%
TGCACTGCCATAAACATCCA+TGG - chr3_2:82154767-82154786 None:intergenic 45.0%
!! ATTCAAATTATTAATTAAAA+GGG - chr3_2:82152730-82152749 None:intergenic 5.0%
!! TATTCAAATTATTAATTAAA+AGG - chr3_2:82152731-82152750 None:intergenic 5.0%
GGAGAACACCCTGAAAGATG+AGG - chr3_2:82153015-82153034 None:intergenic 50.0%
GATGAGATCGATGCCATTGG+TGG + chr3_2:82153388-82153407 Msa0430350:CDS 50.0%
GATGCGGTTGCTAAGCGTAA+TGG + chr3_2:82153913-82153932 Msa0430350:intron 50.0%
CAGTTCTGCCAAACTCTCCA+TGG + chr3_2:82154145-82154164 Msa0430350:intron 50.0%
CAGGGTCAAGTACATCAGGT+CGG - chr3_2:82154234-82154253 None:intergenic 50.0%
AGAGCAGGGTCAAGTACATC+AGG - chr3_2:82154238-82154257 None:intergenic 50.0%
TCTCCTACGTCCTGGAAGAT+TGG + chr3_2:82154255-82154274 Msa0430350:CDS 50.0%
GCTTAGCAATTCCAGCAGCA+TGG - chr3_2:82154339-82154358 None:intergenic 50.0%
GCTGCTGGAATTGCTAAGCA+TGG + chr3_2:82154340-82154359 Msa0430350:CDS 50.0%
TGAAGCGGTTGTGAAGCTTG+CGG + chr3_2:82154375-82154394 Msa0430350:CDS 50.0%
AAGCTTGCGGAGGTAAGTCT+TGG + chr3_2:82154388-82154407 Msa0430350:intron 50.0%
CGAAATGTGTGCACTGAAGC+TGG + chr3_2:82154498-82154517 Msa0430350:CDS 50.0%
TAAGCATTATGGCAGCCGTC+CGG + chr3_2:82154834-82154853 Msa0430350:three_prime_UTR 50.0%
GGATAGTACATGCCATTGCC+CGG - chr3_2:82154856-82154875 None:intergenic 50.0%
ACGAGGAAGAGCCCGCATTA+TGG - chr3_2:82151909-82151928 None:intergenic 55.0%
GTTCTCCTTTATGGGCCTCC+TGG + chr3_2:82153028-82153047 Msa0430350:CDS 55.0%
CCTTTATGGGCCTCCTGGTA+CGG + chr3_2:82153033-82153052 Msa0430350:CDS 55.0%
CTTTATGGGCCTCCTGGTAC+GGG + chr3_2:82153034-82153053 Msa0430350:CDS 55.0%
TGGGTATGCACGTGATCACC+AGG + chr3_2:82153265-82153284 Msa0430350:CDS 55.0%
ACTGAAACGGCGACCACCAA+TGG - chr3_2:82153404-82153423 None:intergenic 55.0%
TTCCAGGACGTAGGAGAGCA+GGG - chr3_2:82154252-82154271 None:intergenic 55.0%
CTTGCGGAGGTAAGTCTTGG+TGG + chr3_2:82154391-82154410 Msa0430350:intron 55.0%
! GGAGGTAAGTCTTGGTGGCT+TGG + chr3_2:82154396-82154415 Msa0430350:intron 55.0%
AAGCATTATGGCAGCCGTCC+GGG + chr3_2:82154835-82154854 Msa0430350:three_prime_UTR 55.0%
AGTACATGCCATTGCCCGGA+CGG - chr3_2:82154852-82154871 None:intergenic 55.0%
CCGTACCAGGAGGCCCATAA+AGG - chr3_2:82153036-82153055 None:intergenic 60.0%
TGGTGGTCGCCGTTTCAGTG+AGG + chr3_2:82153405-82153424 Msa0430350:CDS 60.0%
GGTGGTCGCCGTTTCAGTGA+GGG + chr3_2:82153406-82153425 Msa0430350:CDS 60.0%
CTTCCAGGACGTAGGAGAGC+AGG - chr3_2:82154253-82154272 None:intergenic 60.0%
AGCGGTTGTGAAGCTTGCGG+AGG + chr3_2:82154378-82154397 Msa0430350:CDS 60.0%
ACTTGTGCCCCTTGGGGCAC+AGG + chr3_2:82152556-82152575 Msa0430350:intron 65.0%
GACCCTGCTCTCCTACGTCC+TGG + chr3_2:82154247-82154266 Msa0430350:CDS 65.0%
TATGGCAGCCGTCCGGGCAA+TGG + chr3_2:82154841-82154860 Msa0430350:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 82151868 82154914 82151868 ID=Msa0430350;Name=Msa0430350
chr3_2 mRNA 82151868 82154914 82151868 ID=Msa0430350-mRNA-1;Parent=Msa0430350;Name=Msa0430350-mRNA-1;_AED=0.19;_eAED=0.19;_QI=25|1|1|1|1|1|8|174|292
chr3_2 exon 82151868 82151931 82151868 ID=Msa0430350-mRNA-1:exon:22757;Parent=Msa0430350-mRNA-1
chr3_2 exon 82152085 82152246 82152085 ID=Msa0430350-mRNA-1:exon:22758;Parent=Msa0430350-mRNA-1
chr3_2 exon 82153025 82153111 82153025 ID=Msa0430350-mRNA-1:exon:22759;Parent=Msa0430350-mRNA-1
chr3_2 exon 82153200 82153286 82153200 ID=Msa0430350-mRNA-1:exon:22760;Parent=Msa0430350-mRNA-1
chr3_2 exon 82153370 82153507 82153370 ID=Msa0430350-mRNA-1:exon:22761;Parent=Msa0430350-mRNA-1
chr3_2 exon 82154208 82154399 82154208 ID=Msa0430350-mRNA-1:exon:22762;Parent=Msa0430350-mRNA-1
chr3_2 exon 82154477 82154575 82154477 ID=Msa0430350-mRNA-1:exon:22763;Parent=Msa0430350-mRNA-1
chr3_2 exon 82154666 82154914 82154666 ID=Msa0430350-mRNA-1:exon:22764;Parent=Msa0430350-mRNA-1
chr3_2 five_prime_UTR 82151868 82151892 82151868 ID=Msa0430350-mRNA-1:five_prime_utr;Parent=Msa0430350-mRNA-1
chr3_2 CDS 82151893 82151931 82151893 ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2 CDS 82152085 82152246 82152085 ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2 CDS 82153025 82153111 82153025 ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2 CDS 82153200 82153286 82153200 ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2 CDS 82153370 82153507 82153370 ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2 CDS 82154208 82154399 82154208 ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2 CDS 82154477 82154575 82154477 ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2 CDS 82154666 82154740 82154666 ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2 three_prime_UTR 82154741 82154914 82154741 ID=Msa0430350-mRNA-1:three_prime_utr;Parent=Msa0430350-mRNA-1
Gene Sequence

>Msa0430350

ATGACAACACTCACCATAATGCGGGCTCTTCCTCGTGAAGTTGATCCAGTTGTGTACAATATGTTGCATGAAGATCCCGGTAATATTAGTTACTCTGCTGTTGGTGGTTTATCTGATCAGATCAGGGAATTGAGGGAATCAATTGAATTACCTCTAATGAATCCTGAGCTCTTTCTTAGAGTTGGAATTAAACCTCCCAAGGGTGTTCTCCTTTATGGGCCTCCTGGTACGGGTAAAACATTGTTGGCTAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAGGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTAATTAGAGAGATGTTTGGGTATGCACGTGATCACCAGCCATGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGCCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACGTTAATGGAGCTGCTTAATCAACTTGATGGCTTTGATCAACTTGGAAAGGTTAAAATGATCATGGCAACAAACCGACCTGATGTACTTGACCCTGCTCTCCTACGTCCTGGAAGATTGGATAGAAAAATTGAAATTCCATTGCCAAATGAACAATCGAGGATGGAAATTCTTAAGATCCATGCTGCTGGAATTGCTAAGCATGGTGAAATAGACTATGAAGCGGTTGTGAAGCTTGCGGAGGGGTTTAATGGAGCTGATCTCCGAAATGTGTGCACTGAAGCTGGAATGTCAGCAATTCGAGCAGAGCGTGACTATGTGATCCACGAAGATTTTATGAAGGCTGTAAGGAAATTGAATGAGGCAAAGAAACTTGAATCTAGTGCACACTACAATGCTGATTTTGGAAAAGAATAA
Protein sequence

>Msa0430350

MTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKE*