AlfalfaGEDB | Msa0430350

M. sativa cultivar zhongmu-4 / Msa0430350

KEGG: K03064
GO: GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
PFAM: PF00004.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0430350	XP_013462160.1	100.000	292	0	0	1	292	108	399	0.0	600

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0430350	sp\|Q9MAK9\|PS10B_ARATH	96.575	292	10	0	1	292	108	399	0.0	583

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0430350	A0A072VDE6	100.000	292	0	0	1	292	108	399	0.0	600

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0384470	Msa0430350	0.849384	3.347465e-60	-8.615850e-47
Msa0430350	Msa0435080	0.909580	4.868402e-82	-8.615850e-47
Msa0430350	Msa0479150	0.894834	1.697902e-75	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0430350	MtrunA17_Chr3g0141901	100.000	292	0	0	1	292	108	399	0.0	600
Msa0430350	MtrunA17_Chr3g0145011	97.260	292	8	0	1	292	111	402	0.0	589
Msa0430350	MtrunA17_Chr8g0345461	52.347	277	131	1	10	285	146	422	9.11e-107	317
Msa0430350	MtrunA17_Chr1g0200081	51.228	285	137	2	2	285	148	431	7.62e-105	312
Msa0430350	MtrunA17_Chr4g0050561	54.887	266	119	1	9	273	136	401	6.01e-99	296
Msa0430350	MtrunA17_Chr1g0182711	51.449	276	134	0	3	278	162	437	1.24e-95	289
Msa0430350	MtrunA17_Chr7g0262801	51.449	276	134	0	3	278	161	436	2.11e-95	288
Msa0430350	MtrunA17_Chr1g0192151	49.643	280	140	1	6	285	144	422	3.23e-95	287
Msa0430350	MtrunA17_Chr4g0014731	49.643	280	140	1	6	285	145	423	4.31e-95	287
Msa0430350	MtrunA17_Chr3g0108321	53.695	203	94	0	6	208	136	338	1.94e-76	237

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0430350	AT1G45000.1	96.575	292	10	0	1	292	108	399	0.0	583
Msa0430350	AT5G43010.1	96.575	292	10	0	1	292	108	399	0.0	582
Msa0430350	AT1G45000.2	66.096	292	35	4	1	292	108	335	7.74e-124	357
Msa0430350	AT1G53750.1	52.347	277	131	1	10	285	146	422	1.15e-106	317
Msa0430350	AT1G53780.1	51.613	279	134	1	10	287	318	596	5.28e-100	305
Msa0430350	AT1G53780.4	51.613	279	134	1	10	287	318	596	5.28e-100	305
Msa0430350	AT1G53780.3	51.613	279	134	1	10	287	317	595	5.79e-100	305
Msa0430350	AT5G19990.2	54.887	266	119	1	9	273	80	345	6.90e-100	297
Msa0430350	AT1G53780.2	51.246	281	136	1	10	289	339	619	7.54e-100	305
Msa0430350	AT5G19990.1	54.887	266	119	1	9	273	138	403	2.73e-99	298

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Find 86 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCTCTCTAATTAACC+TGG	0.642963	3_2:-82153243	None:intergenic
AAACTTGGCTGAGGTATTTC+TGG	0.278084	3_2:-82154796	None:intergenic
AAGAGCTCAGGATTCATTAG+AGG	0.454617	3_2:-82152196	None:intergenic
AAGCATTATGGCAGCCGTCC+GGG	0.486326	3_2:+82154835	Msa0430350:three_prime_UTR
AATATGTTGCATGAAGATCC+CGG	0.628998	3_2:+82152103	Msa0430350:CDS
AATATTAGTTACTCTGCTGT+TGG	0.513513	3_2:+82152127	Msa0430350:CDS
AATCATCGAGTTAAGCATTA+TGG	0.336788	3_2:+82154823	Msa0430350:three_prime_UTR
ACGAGGAAGAGCCCGCATTA+TGG	0.402274	3_2:-82151906	None:intergenic
ACTCGATGATTTGACAAACT+TGG	0.432155	3_2:-82154811	None:intergenic
ACTGAAACGGCGACCACCAA+TGG	0.525549	3_2:-82153401	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCAGAGTAACTAATATTAC+CGG	-	chr3_2:82152125-82152144	None:intergenic	30.0%
AATATTAGTTACTCTGCTGT+TGG	+	chr3_2:82152127-82152146	Msa0430350:CDS	30.0%
GTTTAGATGAAGGGTAAATT+TGG	+	chr3_2:82152785-82152804	Msa0430350:intron	30.0%
CAGAAACATTGAAAACAACA+TGG	+	chr3_2:82152881-82152900	Msa0430350:intron	30.0%
GAAGTTAGCATCTATATTAC+TGG	-	chr3_2:82153086-82153105	None:intergenic	30.0%
TATAGATGCTAACTTCCTAA+AGG	+	chr3_2:82153090-82153109	Msa0430350:CDS	30.0%
GCCATAATTGATAAGTACAT+TGG	+	chr3_2:82153212-82153231	Msa0430350:CDS	30.0%
AAACATCTCTCTAATTAACC+TGG	-	chr3_2:82153246-82153265	None:intergenic	30.0%
AGGTTAATTAGAGAGATGTT+TGG	+	chr3_2:82153245-82153264	Msa0430350:CDS	30.0%
GGTTAATTAGAGAGATGTTT+GGG	+	chr3_2:82153246-82153265	Msa0430350:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	82151868	82154914	82151868	ID=Msa0430350;Name=Msa0430350
chr3_2	mRNA	82151868	82154914	82151868	ID=Msa0430350-mRNA-1;Parent=Msa0430350;Name=Msa0430350-mRNA-1;_AED=0.19;_eAED=0.19;_QI=25\|1\|1\|1\|1\|1\|8\|174\|292
chr3_2	exon	82151868	82151931	82151868	ID=Msa0430350-mRNA-1:exon:22757;Parent=Msa0430350-mRNA-1
chr3_2	exon	82152085	82152246	82152085	ID=Msa0430350-mRNA-1:exon:22758;Parent=Msa0430350-mRNA-1
chr3_2	exon	82153025	82153111	82153025	ID=Msa0430350-mRNA-1:exon:22759;Parent=Msa0430350-mRNA-1
chr3_2	exon	82153200	82153286	82153200	ID=Msa0430350-mRNA-1:exon:22760;Parent=Msa0430350-mRNA-1
chr3_2	exon	82153370	82153507	82153370	ID=Msa0430350-mRNA-1:exon:22761;Parent=Msa0430350-mRNA-1
chr3_2	exon	82154208	82154399	82154208	ID=Msa0430350-mRNA-1:exon:22762;Parent=Msa0430350-mRNA-1
chr3_2	exon	82154477	82154575	82154477	ID=Msa0430350-mRNA-1:exon:22763;Parent=Msa0430350-mRNA-1
chr3_2	exon	82154666	82154914	82154666	ID=Msa0430350-mRNA-1:exon:22764;Parent=Msa0430350-mRNA-1
chr3_2	five_prime_UTR	82151868	82151892	82151868	ID=Msa0430350-mRNA-1:five_prime_utr;Parent=Msa0430350-mRNA-1
chr3_2	CDS	82151893	82151931	82151893	ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2	CDS	82152085	82152246	82152085	ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2	CDS	82153025	82153111	82153025	ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2	CDS	82153200	82153286	82153200	ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2	CDS	82153370	82153507	82153370	ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2	CDS	82154208	82154399	82154208	ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2	CDS	82154477	82154575	82154477	ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2	CDS	82154666	82154740	82154666	ID=Msa0430350-mRNA-1:cds;Parent=Msa0430350-mRNA-1
chr3_2	three_prime_UTR	82154741	82154914	82154741	ID=Msa0430350-mRNA-1:three_prime_utr;Parent=Msa0430350-mRNA-1

Gene Sequence

>Msa0430350

ATGACAACACTCACCATAATGCGGGCTCTTCCTCGTGAAGTTGATCCAGTTGTGTACAATATGTTGCATGAAGATCCCGGTAATATTAGTTACTCTGCTGTTGGTGGTTTATCTGATCAGATCAGGGAATTGAGGGAATCAATTGAATTACCTCTAATGAATCCTGAGCTCTTTCTTAGAGTTGGAATTAAACCTCCCAAGGGTGTTCTCCTTTATGGGCCTCCTGGTACGGGTAAAACATTGTTGGCTAGGGCTATTGCCAGTAATATAGATGCTAACTTCCTAAAGGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTAATTAGAGAGATGTTTGGGTATGCACGTGATCACCAGCCATGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGCCGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACGTTAATGGAGCTGCTTAATCAACTTGATGGCTTTGATCAACTTGGAAAGGTTAAAATGATCATGGCAACAAACCGACCTGATGTACTTGACCCTGCTCTCCTACGTCCTGGAAGATTGGATAGAAAAATTGAAATTCCATTGCCAAATGAACAATCGAGGATGGAAATTCTTAAGATCCATGCTGCTGGAATTGCTAAGCATGGTGAAATAGACTATGAAGCGGTTGTGAAGCTTGCGGAGGGGTTTAATGGAGCTGATCTCCGAAATGTGTGCACTGAAGCTGGAATGTCAGCAATTCGAGCAGAGCGTGACTATGTGATCCACGAAGATTTTATGAAGGCTGTAAGGAAATTGAATGAGGCAAAGAAACTTGAATCTAGTGCACACTACAATGCTGATTTTGGAAAAGAATAA

Protein sequence

>Msa0430350

MTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKE*