Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431280 | XP_003603204.2 | 92.937 | 269 | 18 | 1 | 1 | 268 | 1 | 269 | 4.76e-174 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431280 | A0A396J0V3 | 92.937 | 269 | 18 | 1 | 1 | 268 | 1 | 269 | 2.27e-174 | 491 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0431280 | Msa0520510 | 0.806959 | 6.386023e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431280 | MtrunA17_Chr3g0136271 | 92.937 | 269 | 18 | 1 | 1 | 268 | 1 | 269 | 4.38e-178 | 491 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431280 | AT1G76880.1 | 39.474 | 76 | 46 | 0 | 187 | 262 | 256 | 331 | 6.99e-11 | 62.8 |
Find 57 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTTGGGGTTAAGATATT+TGG | 0.163691 | 3_2:-83346704 | None:intergenic |
| ACAACAACAAACACATTCTT+TGG | 0.164595 | 3_2:+83346868 | Msa0431280:CDS |
| GATGCGAAAGAAGAGATTTA+AGG | 0.234830 | 3_2:+83347610 | Msa0431280:CDS |
| GGATACAGAGGGAAGAAAAT+TGG | 0.293718 | 3_2:+83347747 | Msa0431280:CDS |
| TTCTTGATAAAGGATGTTAT+TGG | 0.304540 | 3_2:-83346639 | None:intergenic |
| TGAGTTTCTGTTCTTGATAA+AGG | 0.309215 | 3_2:-83346649 | None:intergenic |
| TAGGGTGATGAATGTGGTTT+GGG | 0.329828 | 3_2:-83346718 | None:intergenic |
| TCCAGCATTGAGAAAATAAC+TGG | 0.347658 | 3_2:+83347860 | Msa0431280:CDS |
| AAATGGACTAATAGTATGTT+TGG | 0.347915 | 3_2:-83346474 | None:intergenic |
| GACTAATAGTATGTTTGGTT+TGG | 0.351660 | 3_2:-83346469 | None:intergenic |
| AAACATACTATTAGTCCATT+TGG | 0.360178 | 3_2:+83346476 | Msa0431280:five_prime_UTR |
| AATGATAGTGTTGGAGAATA+GGG | 0.371956 | 3_2:-83346736 | None:intergenic |
| ATTTGGAGGGTTGTTGAGAA+TGG | 0.405149 | 3_2:-83346687 | None:intergenic |
| TTGGTGATTAACCACAGTTT+TGG | 0.419669 | 3_2:-83347672 | None:intergenic |
| GGTAAACAACGAGAGATGTT+TGG | 0.420148 | 3_2:+83347487 | Msa0431280:CDS |
| TAATAGTATGTTTGGTTTGG+CGG | 0.420398 | 3_2:-83346466 | None:intergenic |
| TAATGATAGTGTTGGAGAAT+AGG | 0.423149 | 3_2:-83346737 | None:intergenic |
| GGTTCTTCAGAAGAAATTGT+TGG | 0.438181 | 3_2:+83347697 | Msa0431280:CDS |
| CTAGATGATACAAGAAAGAA+TGG | 0.440306 | 3_2:-83346543 | None:intergenic |
| CAACAACAAACACATTCTTT+GGG | 0.448951 | 3_2:+83346869 | Msa0431280:CDS |
| TGAGAATGGAACCATCATCT+AGG | 0.456014 | 3_2:-83346673 | None:intergenic |
| TTGGTTTCCGACAACAACTT+TGG | 0.462012 | 3_2:+83347506 | Msa0431280:CDS |
| ATAGGGTGATGAATGTGGTT+TGG | 0.467705 | 3_2:-83346719 | None:intergenic |
| GTTGGAGGTGATTGATAGAA+TGG | 0.468582 | 3_2:+83347715 | Msa0431280:CDS |
| GTGATGGTTGAAATTTATGT+TGG | 0.470837 | 3_2:-83346844 | None:intergenic |
| ATTTCTTCTGAAGAACCTCT+TGG | 0.473081 | 3_2:-83347691 | None:intergenic |
| AAGCTCACCAAAGTTGTTGT+CGG | 0.473825 | 3_2:-83347513 | None:intergenic |
| TGTGTTTGTTGTTGTTGTGA+TGG | 0.481062 | 3_2:-83346860 | None:intergenic |
| TAGTATGTTTGGTTTGGCGG+TGG | 0.485599 | 3_2:-83346463 | None:intergenic |
| AGTATGTTTGGTTTGGCGGT+GGG | 0.497095 | 3_2:-83346462 | None:intergenic |
| CTTGAAGCTGTGTACAAACT+TGG | 0.499197 | 3_2:+83347533 | Msa0431280:CDS |
| TTTGGGGTTAAGATATTTGG+AGG | 0.499198 | 3_2:-83346701 | None:intergenic |
| GATGCAGCCTTGCAATGAAA+TGG | 0.512442 | 3_2:+83346616 | Msa0431280:exon |
| ACACTTAAGATTCAATGCTC+TGG | 0.534328 | 3_2:-83346590 | None:intergenic |
| AGGAACATGATTCGAAGAGA+AGG | 0.540619 | 3_2:+83347576 | Msa0431280:CDS |
| CAGAAACTCACCCTAGATGA+TGG | 0.541007 | 3_2:+83346662 | Msa0431280:CDS |
| GGAAGACTGAAAGAACCAAA+TGG | 0.541750 | 3_2:-83346491 | None:intergenic |
| GGAAGAAATGAGTTTGATGA+GGG | 0.542238 | 3_2:+83347631 | Msa0431280:CDS |
| TTATTGGCCATTTCATTGCA+AGG | 0.547535 | 3_2:-83346623 | None:intergenic |
| ATGATTCGAAGAGAAGGGCT+AGG | 0.550539 | 3_2:+83347582 | Msa0431280:CDS |
| AGGAAGAAATGAGTTTGATG+AGG | 0.562603 | 3_2:+83347630 | Msa0431280:CDS |
| TCTTCAGAAGAAATTGTTGG+AGG | 0.567079 | 3_2:+83347700 | Msa0431280:CDS |
| GTATGTTTGGTTTGGCGGTG+GGG | 0.569259 | 3_2:-83346461 | None:intergenic |
| GAGAATGGAACCATCATCTA+GGG | 0.574060 | 3_2:-83346672 | None:intergenic |
| GGAACATGATTCGAAGAGAA+GGG | 0.586343 | 3_2:+83347577 | Msa0431280:CDS |
| GGAGAATAGGGTGATGAATG+TGG | 0.595952 | 3_2:-83346724 | None:intergenic |
| TTGGGGTTAAGATATTTGGA+GGG | 0.596919 | 3_2:-83346700 | None:intergenic |
| TAGATGATACAAGAAAGAAT+GGG | 0.601225 | 3_2:-83346542 | None:intergenic |
| TAAAAGATTGACCAAAACTG+TGG | 0.602456 | 3_2:+83347661 | Msa0431280:CDS |
| TACAGAGGGAAGAAAATTGG+AGG | 0.605765 | 3_2:+83347750 | Msa0431280:CDS |
| CAGGAAAGCATTCAACAACA+CGG | 0.615004 | 3_2:+83347427 | Msa0431280:intron |
| AATCGTTACATCGAATGCGA+AGG | 0.628296 | 3_2:+83346905 | Msa0431280:CDS |
| ACACACAACAACAGAAAGAA+CGG | 0.629520 | 3_2:+83346777 | Msa0431280:CDS |
| ATTGTGAGTAATGATAGTGT+TGG | 0.653355 | 3_2:-83346745 | None:intergenic |
| AACTGTGGTTAATCACCAAG+AGG | 0.665729 | 3_2:+83347676 | Msa0431280:CDS |
| AGGGTGATGAATGTGGTTTG+GGG | 0.692532 | 3_2:-83346717 | None:intergenic |
| TCAGAATCAAGCGTTCACTG+AGG | 0.786263 | 3_2:+83347556 | Msa0431280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTTTTTTTTTTTTT+TGG | + | chr3_2:83346978-83346997 | Msa0431280:intron | 0.0% |
| !!! | TTATTATTTTTTTTTTTTTT+TGG | + | chr3_2:83346978-83346997 | Msa0431280:intron | 0.0% |
| !! | GTCATTAAAAATATTTATCA+AGG | - | chr3_2:83347321-83347340 | None:intergenic | 15.0% |
| !! | GTCATTAAAAATATTTATCA+AGG | - | chr3_2:83347321-83347340 | None:intergenic | 15.0% |
| !!! | ACATTTTTATCAATCATATG+AGG | + | chr3_2:83346817-83346836 | Msa0431280:CDS | 20.0% |
| !!! | GGTGTTAATTTTATAAAGAA+AGG | - | chr3_2:83347089-83347108 | None:intergenic | 20.0% |
| !! | AATATTTATCAAGGATTGAT+AGG | - | chr3_2:83347312-83347331 | None:intergenic | 20.0% |
| !!! | ACATTTTTATCAATCATATG+AGG | + | chr3_2:83346817-83346836 | Msa0431280:CDS | 20.0% |
| !!! | GGTGTTAATTTTATAAAGAA+AGG | - | chr3_2:83347089-83347108 | None:intergenic | 20.0% |
| !! | AATATTTATCAAGGATTGAT+AGG | - | chr3_2:83347312-83347331 | None:intergenic | 20.0% |
| !!! | AAATGGACTAATAGTATGTT+TGG | - | chr3_2:83346477-83346496 | None:intergenic | 25.0% |
| ! | AAACATACTATTAGTCCATT+TGG | + | chr3_2:83346476-83346495 | Msa0431280:five_prime_UTR | 25.0% |
| !! | AAATAGTGAATTTGCGTTTT+TGG | - | chr3_2:83346515-83346534 | None:intergenic | 25.0% |
| ! | TAGATGATACAAGAAAGAAT+GGG | - | chr3_2:83346545-83346564 | None:intergenic | 25.0% |
| ! | TTCTTGATAAAGGATGTTAT+TGG | - | chr3_2:83346642-83346661 | None:intergenic | 25.0% |
| ! | GAATTACCAAAAAGATACTT+TGG | - | chr3_2:83346939-83346958 | None:intergenic | 25.0% |
| ! | CAGAACATGTTATATAATGT+GGG | - | chr3_2:83347122-83347141 | None:intergenic | 25.0% |
| ! | TCAGAACATGTTATATAATG+TGG | - | chr3_2:83347123-83347142 | None:intergenic | 25.0% |
| ! | ACAAACATACATAATGTGAT+AGG | - | chr3_2:83347396-83347415 | None:intergenic | 25.0% |
| ! | AGAAAAACAACAACATGAAA+AGG | + | chr3_2:83347466-83347485 | Msa0431280:CDS | 25.0% |
| ! | TTGATAGAATGGAAAAAGAA+AGG | + | chr3_2:83347726-83347745 | Msa0431280:CDS | 25.0% |
| !!! | AAATGGACTAATAGTATGTT+TGG | - | chr3_2:83346477-83346496 | None:intergenic | 25.0% |
| ! | AAACATACTATTAGTCCATT+TGG | + | chr3_2:83346476-83346495 | Msa0431280:five_prime_UTR | 25.0% |
| !! | AAATAGTGAATTTGCGTTTT+TGG | - | chr3_2:83346515-83346534 | None:intergenic | 25.0% |
| ! | TAGATGATACAAGAAAGAAT+GGG | - | chr3_2:83346545-83346564 | None:intergenic | 25.0% |
| ! | TTCTTGATAAAGGATGTTAT+TGG | - | chr3_2:83346642-83346661 | None:intergenic | 25.0% |
| ! | GAATTACCAAAAAGATACTT+TGG | - | chr3_2:83346939-83346958 | None:intergenic | 25.0% |
| ! | CAGAACATGTTATATAATGT+GGG | - | chr3_2:83347122-83347141 | None:intergenic | 25.0% |
| ! | TCAGAACATGTTATATAATG+TGG | - | chr3_2:83347123-83347142 | None:intergenic | 25.0% |
| ! | ACAAACATACATAATGTGAT+AGG | - | chr3_2:83347396-83347415 | None:intergenic | 25.0% |
| ! | AGAAAAACAACAACATGAAA+AGG | + | chr3_2:83347466-83347485 | Msa0431280:CDS | 25.0% |
| ! | TTGATAGAATGGAAAAAGAA+AGG | + | chr3_2:83347726-83347745 | Msa0431280:CDS | 25.0% |
| !! | TAATAGTATGTTTGGTTTGG+CGG | - | chr3_2:83346469-83346488 | None:intergenic | 30.0% |
| GACTAATAGTATGTTTGGTT+TGG | - | chr3_2:83346472-83346491 | None:intergenic | 30.0% | |
| CTAGATGATACAAGAAAGAA+TGG | - | chr3_2:83346546-83346565 | None:intergenic | 30.0% | |
| TGAGTTTCTGTTCTTGATAA+AGG | - | chr3_2:83346652-83346671 | None:intergenic | 30.0% | |
| ! | AATGATAGTGTTGGAGAATA+GGG | - | chr3_2:83346739-83346758 | None:intergenic | 30.0% |
| ! | TAATGATAGTGTTGGAGAAT+AGG | - | chr3_2:83346740-83346759 | None:intergenic | 30.0% |
| ! | ATTGTGAGTAATGATAGTGT+TGG | - | chr3_2:83346748-83346767 | None:intergenic | 30.0% |
| GTGATGGTTGAAATTTATGT+TGG | - | chr3_2:83346847-83346866 | None:intergenic | 30.0% | |
| ACAACAACAAACACATTCTT+TGG | + | chr3_2:83346868-83346887 | Msa0431280:CDS | 30.0% | |
| CAACAACAAACACATTCTTT+GGG | + | chr3_2:83346869-83346888 | Msa0431280:CDS | 30.0% | |
| CAGATTTGTACATTTATTCC+GGG | - | chr3_2:83347161-83347180 | None:intergenic | 30.0% | |
| CCAGATTTGTACATTTATTC+CGG | - | chr3_2:83347162-83347181 | None:intergenic | 30.0% | |
| TTGATAGGCAAATAGATCAT+TGG | - | chr3_2:83347297-83347316 | None:intergenic | 30.0% | |
| CACATTATGTATGTTTGTGT+TGG | + | chr3_2:83347398-83347417 | Msa0431280:intron | 30.0% | |
| TAAAAGATTGACCAAAACTG+TGG | + | chr3_2:83347661-83347680 | Msa0431280:CDS | 30.0% | |
| !! | TAATAGTATGTTTGGTTTGG+CGG | - | chr3_2:83346469-83346488 | None:intergenic | 30.0% |
| GACTAATAGTATGTTTGGTT+TGG | - | chr3_2:83346472-83346491 | None:intergenic | 30.0% | |
| CTAGATGATACAAGAAAGAA+TGG | - | chr3_2:83346546-83346565 | None:intergenic | 30.0% | |
| TGAGTTTCTGTTCTTGATAA+AGG | - | chr3_2:83346652-83346671 | None:intergenic | 30.0% | |
| ! | AATGATAGTGTTGGAGAATA+GGG | - | chr3_2:83346739-83346758 | None:intergenic | 30.0% |
| ! | TAATGATAGTGTTGGAGAAT+AGG | - | chr3_2:83346740-83346759 | None:intergenic | 30.0% |
| ! | ATTGTGAGTAATGATAGTGT+TGG | - | chr3_2:83346748-83346767 | None:intergenic | 30.0% |
| GTGATGGTTGAAATTTATGT+TGG | - | chr3_2:83346847-83346866 | None:intergenic | 30.0% | |
| ACAACAACAAACACATTCTT+TGG | + | chr3_2:83346868-83346887 | Msa0431280:CDS | 30.0% | |
| CAACAACAAACACATTCTTT+GGG | + | chr3_2:83346869-83346888 | Msa0431280:CDS | 30.0% | |
| CAGATTTGTACATTTATTCC+GGG | - | chr3_2:83347161-83347180 | None:intergenic | 30.0% | |
| CCAGATTTGTACATTTATTC+CGG | - | chr3_2:83347162-83347181 | None:intergenic | 30.0% | |
| TTGATAGGCAAATAGATCAT+TGG | - | chr3_2:83347297-83347316 | None:intergenic | 30.0% | |
| CACATTATGTATGTTTGTGT+TGG | + | chr3_2:83347398-83347417 | Msa0431280:intron | 30.0% | |
| TAAAAGATTGACCAAAACTG+TGG | + | chr3_2:83347661-83347680 | Msa0431280:CDS | 30.0% | |
| ACACTTAAGATTCAATGCTC+TGG | - | chr3_2:83346593-83346612 | None:intergenic | 35.0% | |
| TTATTGGCCATTTCATTGCA+AGG | - | chr3_2:83346626-83346645 | None:intergenic | 35.0% | |
| TTGGGGTTAAGATATTTGGA+GGG | - | chr3_2:83346703-83346722 | None:intergenic | 35.0% | |
| ! | TTTGGGGTTAAGATATTTGG+AGG | - | chr3_2:83346704-83346723 | None:intergenic | 35.0% |
| ! | TGGTTTGGGGTTAAGATATT+TGG | - | chr3_2:83346707-83346726 | None:intergenic | 35.0% |
| ACACACAACAACAGAAAGAA+CGG | + | chr3_2:83346777-83346796 | Msa0431280:CDS | 35.0% | |
| !! | TGTGTTTGTTGTTGTTGTGA+TGG | - | chr3_2:83346863-83346882 | None:intergenic | 35.0% |
| CCAAAAAGATACTTTGGCAT+TGG | - | chr3_2:83346933-83346952 | None:intergenic | 35.0% | |
| !! | CCAATGCCAAAGTATCTTTT+TGG | + | chr3_2:83346930-83346949 | Msa0431280:CDS | 35.0% |
| TATAATGTGGGTGTATATGC+TGG | - | chr3_2:83347110-83347129 | None:intergenic | 35.0% | |
| CCGGAATAAATGTACAAATC+TGG | + | chr3_2:83347159-83347178 | Msa0431280:intron | 35.0% | |
| TACTACCCATCTTGATGTAT+TGG | + | chr3_2:83347214-83347233 | Msa0431280:intron | 35.0% | |
| CAAGACCAATACATCAAGAT+GGG | - | chr3_2:83347222-83347241 | None:intergenic | 35.0% | |
| TTTGCTTTCGCAATTAGTAC+AGG | + | chr3_2:83347262-83347281 | Msa0431280:intron | 35.0% | |
| GCAATTAGTACAGGTGATAT+AGG | + | chr3_2:83347271-83347290 | Msa0431280:intron | 35.0% | |
| !! | ATGTTTGTGTTGGCATTTTC+AGG | + | chr3_2:83347408-83347427 | Msa0431280:intron | 35.0% |
| GATGCGAAAGAAGAGATTTA+AGG | + | chr3_2:83347610-83347629 | Msa0431280:CDS | 35.0% | |
| AGGAAGAAATGAGTTTGATG+AGG | + | chr3_2:83347630-83347649 | Msa0431280:CDS | 35.0% | |
| GGAAGAAATGAGTTTGATGA+GGG | + | chr3_2:83347631-83347650 | Msa0431280:CDS | 35.0% | |
| !! | TTGGTGATTAACCACAGTTT+TGG | - | chr3_2:83347675-83347694 | None:intergenic | 35.0% |
| ! | ATTTCTTCTGAAGAACCTCT+TGG | - | chr3_2:83347694-83347713 | None:intergenic | 35.0% |
| GGTTCTTCAGAAGAAATTGT+TGG | + | chr3_2:83347697-83347716 | Msa0431280:CDS | 35.0% | |
| TCTTCAGAAGAAATTGTTGG+AGG | + | chr3_2:83347700-83347719 | Msa0431280:CDS | 35.0% | |
| TGGAAAAAGAAAGGATACAG+AGG | + | chr3_2:83347735-83347754 | Msa0431280:CDS | 35.0% | |
| GGAAAAAGAAAGGATACAGA+GGG | + | chr3_2:83347736-83347755 | Msa0431280:CDS | 35.0% | |
| ! | TCCAGCATTGAGAAAATAAC+TGG | + | chr3_2:83347860-83347879 | Msa0431280:CDS | 35.0% |
| !! | ACCAGTTATTTTCTCAATGC+TGG | - | chr3_2:83347864-83347883 | None:intergenic | 35.0% |
| ACACTTAAGATTCAATGCTC+TGG | - | chr3_2:83346593-83346612 | None:intergenic | 35.0% | |
| TTATTGGCCATTTCATTGCA+AGG | - | chr3_2:83346626-83346645 | None:intergenic | 35.0% | |
| TTGGGGTTAAGATATTTGGA+GGG | - | chr3_2:83346703-83346722 | None:intergenic | 35.0% | |
| ! | TTTGGGGTTAAGATATTTGG+AGG | - | chr3_2:83346704-83346723 | None:intergenic | 35.0% |
| ! | TGGTTTGGGGTTAAGATATT+TGG | - | chr3_2:83346707-83346726 | None:intergenic | 35.0% |
| ACACACAACAACAGAAAGAA+CGG | + | chr3_2:83346777-83346796 | Msa0431280:CDS | 35.0% | |
| !! | TGTGTTTGTTGTTGTTGTGA+TGG | - | chr3_2:83346863-83346882 | None:intergenic | 35.0% |
| CCAAAAAGATACTTTGGCAT+TGG | - | chr3_2:83346933-83346952 | None:intergenic | 35.0% | |
| !! | CCAATGCCAAAGTATCTTTT+TGG | + | chr3_2:83346930-83346949 | Msa0431280:CDS | 35.0% |
| TATAATGTGGGTGTATATGC+TGG | - | chr3_2:83347110-83347129 | None:intergenic | 35.0% | |
| CCGGAATAAATGTACAAATC+TGG | + | chr3_2:83347159-83347178 | Msa0431280:intron | 35.0% | |
| TACTACCCATCTTGATGTAT+TGG | + | chr3_2:83347214-83347233 | Msa0431280:intron | 35.0% | |
| CAAGACCAATACATCAAGAT+GGG | - | chr3_2:83347222-83347241 | None:intergenic | 35.0% | |
| TTTGCTTTCGCAATTAGTAC+AGG | + | chr3_2:83347262-83347281 | Msa0431280:intron | 35.0% | |
| GCAATTAGTACAGGTGATAT+AGG | + | chr3_2:83347271-83347290 | Msa0431280:intron | 35.0% | |
| !! | ATGTTTGTGTTGGCATTTTC+AGG | + | chr3_2:83347408-83347427 | Msa0431280:intron | 35.0% |
| GATGCGAAAGAAGAGATTTA+AGG | + | chr3_2:83347610-83347629 | Msa0431280:CDS | 35.0% | |
| AGGAAGAAATGAGTTTGATG+AGG | + | chr3_2:83347630-83347649 | Msa0431280:CDS | 35.0% | |
| GGAAGAAATGAGTTTGATGA+GGG | + | chr3_2:83347631-83347650 | Msa0431280:CDS | 35.0% | |
| !! | TTGGTGATTAACCACAGTTT+TGG | - | chr3_2:83347675-83347694 | None:intergenic | 35.0% |
| ! | ATTTCTTCTGAAGAACCTCT+TGG | - | chr3_2:83347694-83347713 | None:intergenic | 35.0% |
| GGTTCTTCAGAAGAAATTGT+TGG | + | chr3_2:83347697-83347716 | Msa0431280:CDS | 35.0% | |
| TCTTCAGAAGAAATTGTTGG+AGG | + | chr3_2:83347700-83347719 | Msa0431280:CDS | 35.0% | |
| TGGAAAAAGAAAGGATACAG+AGG | + | chr3_2:83347735-83347754 | Msa0431280:CDS | 35.0% | |
| GGAAAAAGAAAGGATACAGA+GGG | + | chr3_2:83347736-83347755 | Msa0431280:CDS | 35.0% | |
| ! | TCCAGCATTGAGAAAATAAC+TGG | + | chr3_2:83347860-83347879 | Msa0431280:CDS | 35.0% |
| !! | ACCAGTTATTTTCTCAATGC+TGG | - | chr3_2:83347864-83347883 | None:intergenic | 35.0% |
| GGAAGACTGAAAGAACCAAA+TGG | - | chr3_2:83346494-83346513 | None:intergenic | 40.0% | |
| GAGAATGGAACCATCATCTA+GGG | - | chr3_2:83346675-83346694 | None:intergenic | 40.0% | |
| TGAGAATGGAACCATCATCT+AGG | - | chr3_2:83346676-83346695 | None:intergenic | 40.0% | |
| ATTTGGAGGGTTGTTGAGAA+TGG | - | chr3_2:83346690-83346709 | None:intergenic | 40.0% | |
| TAGGGTGATGAATGTGGTTT+GGG | - | chr3_2:83346721-83346740 | None:intergenic | 40.0% | |
| ATAGGGTGATGAATGTGGTT+TGG | - | chr3_2:83346722-83346741 | None:intergenic | 40.0% | |
| AATCGTTACATCGAATGCGA+AGG | + | chr3_2:83346905-83346924 | Msa0431280:CDS | 40.0% | |
| TTTATTCCGGGCTCATTGTA+CGG | - | chr3_2:83347149-83347168 | None:intergenic | 40.0% | |
| ! | GTACAAATCTGGTTAGCTCA+TGG | + | chr3_2:83347170-83347189 | Msa0431280:intron | 40.0% |
| GCAAGACCAATACATCAAGA+TGG | - | chr3_2:83347223-83347242 | None:intergenic | 40.0% | |
| !! | CAGGAAAGCATTCAACAACA+CGG | + | chr3_2:83347427-83347446 | Msa0431280:intron | 40.0% |
| GGTAAACAACGAGAGATGTT+TGG | + | chr3_2:83347487-83347506 | Msa0431280:CDS | 40.0% | |
| TTGGTTTCCGACAACAACTT+TGG | + | chr3_2:83347506-83347525 | Msa0431280:CDS | 40.0% | |
| AAGCTCACCAAAGTTGTTGT+CGG | - | chr3_2:83347516-83347535 | None:intergenic | 40.0% | |
| CTTGAAGCTGTGTACAAACT+TGG | + | chr3_2:83347533-83347552 | Msa0431280:CDS | 40.0% | |
| AGGAACATGATTCGAAGAGA+AGG | + | chr3_2:83347576-83347595 | Msa0431280:CDS | 40.0% | |
| GGAACATGATTCGAAGAGAA+GGG | + | chr3_2:83347577-83347596 | Msa0431280:CDS | 40.0% | |
| AACTGTGGTTAATCACCAAG+AGG | + | chr3_2:83347676-83347695 | Msa0431280:CDS | 40.0% | |
| GTTGGAGGTGATTGATAGAA+TGG | + | chr3_2:83347715-83347734 | Msa0431280:CDS | 40.0% | |
| GGATACAGAGGGAAGAAAAT+TGG | + | chr3_2:83347747-83347766 | Msa0431280:CDS | 40.0% | |
| TACAGAGGGAAGAAAATTGG+AGG | + | chr3_2:83347750-83347769 | Msa0431280:CDS | 40.0% | |
| ! | GTGAGCGTGATTTTGCTAAA+CGG | + | chr3_2:83347819-83347838 | Msa0431280:CDS | 40.0% |
| GGAAGACTGAAAGAACCAAA+TGG | - | chr3_2:83346494-83346513 | None:intergenic | 40.0% | |
| GAGAATGGAACCATCATCTA+GGG | - | chr3_2:83346675-83346694 | None:intergenic | 40.0% | |
| TGAGAATGGAACCATCATCT+AGG | - | chr3_2:83346676-83346695 | None:intergenic | 40.0% | |
| ATTTGGAGGGTTGTTGAGAA+TGG | - | chr3_2:83346690-83346709 | None:intergenic | 40.0% | |
| TAGGGTGATGAATGTGGTTT+GGG | - | chr3_2:83346721-83346740 | None:intergenic | 40.0% | |
| ATAGGGTGATGAATGTGGTT+TGG | - | chr3_2:83346722-83346741 | None:intergenic | 40.0% | |
| AATCGTTACATCGAATGCGA+AGG | + | chr3_2:83346905-83346924 | Msa0431280:CDS | 40.0% | |
| TTTATTCCGGGCTCATTGTA+CGG | - | chr3_2:83347149-83347168 | None:intergenic | 40.0% | |
| ! | GTACAAATCTGGTTAGCTCA+TGG | + | chr3_2:83347170-83347189 | Msa0431280:intron | 40.0% |
| GCAAGACCAATACATCAAGA+TGG | - | chr3_2:83347223-83347242 | None:intergenic | 40.0% | |
| !! | CAGGAAAGCATTCAACAACA+CGG | + | chr3_2:83347427-83347446 | Msa0431280:intron | 40.0% |
| GGTAAACAACGAGAGATGTT+TGG | + | chr3_2:83347487-83347506 | Msa0431280:CDS | 40.0% | |
| TTGGTTTCCGACAACAACTT+TGG | + | chr3_2:83347506-83347525 | Msa0431280:CDS | 40.0% | |
| AAGCTCACCAAAGTTGTTGT+CGG | - | chr3_2:83347516-83347535 | None:intergenic | 40.0% | |
| CTTGAAGCTGTGTACAAACT+TGG | + | chr3_2:83347533-83347552 | Msa0431280:CDS | 40.0% | |
| AGGAACATGATTCGAAGAGA+AGG | + | chr3_2:83347576-83347595 | Msa0431280:CDS | 40.0% | |
| GGAACATGATTCGAAGAGAA+GGG | + | chr3_2:83347577-83347596 | Msa0431280:CDS | 40.0% | |
| AACTGTGGTTAATCACCAAG+AGG | + | chr3_2:83347676-83347695 | Msa0431280:CDS | 40.0% | |
| GTTGGAGGTGATTGATAGAA+TGG | + | chr3_2:83347715-83347734 | Msa0431280:CDS | 40.0% | |
| GGATACAGAGGGAAGAAAAT+TGG | + | chr3_2:83347747-83347766 | Msa0431280:CDS | 40.0% | |
| TACAGAGGGAAGAAAATTGG+AGG | + | chr3_2:83347750-83347769 | Msa0431280:CDS | 40.0% | |
| ! | GTGAGCGTGATTTTGCTAAA+CGG | + | chr3_2:83347819-83347838 | Msa0431280:CDS | 40.0% |
| !! | AGTATGTTTGGTTTGGCGGT+GGG | - | chr3_2:83346465-83346484 | None:intergenic | 45.0% |
| !! | TAGTATGTTTGGTTTGGCGG+TGG | - | chr3_2:83346466-83346485 | None:intergenic | 45.0% |
| GATGCAGCCTTGCAATGAAA+TGG | + | chr3_2:83346616-83346635 | Msa0431280:exon | 45.0% | |
| CAGAAACTCACCCTAGATGA+TGG | + | chr3_2:83346662-83346681 | Msa0431280:CDS | 45.0% | |
| AGGGTGATGAATGTGGTTTG+GGG | - | chr3_2:83346720-83346739 | None:intergenic | 45.0% | |
| GGAGAATAGGGTGATGAATG+TGG | - | chr3_2:83346727-83346746 | None:intergenic | 45.0% | |
| TGATAACCGTACAATGAGCC+CGG | + | chr3_2:83347140-83347159 | Msa0431280:intron | 45.0% | |
| TCAGAATCAAGCGTTCACTG+AGG | + | chr3_2:83347556-83347575 | Msa0431280:CDS | 45.0% | |
| ATGATTCGAAGAGAAGGGCT+AGG | + | chr3_2:83347582-83347601 | Msa0431280:CDS | 45.0% | |
| !! | AGTATGTTTGGTTTGGCGGT+GGG | - | chr3_2:83346465-83346484 | None:intergenic | 45.0% |
| !! | TAGTATGTTTGGTTTGGCGG+TGG | - | chr3_2:83346466-83346485 | None:intergenic | 45.0% |
| GATGCAGCCTTGCAATGAAA+TGG | + | chr3_2:83346616-83346635 | Msa0431280:exon | 45.0% | |
| CAGAAACTCACCCTAGATGA+TGG | + | chr3_2:83346662-83346681 | Msa0431280:CDS | 45.0% | |
| AGGGTGATGAATGTGGTTTG+GGG | - | chr3_2:83346720-83346739 | None:intergenic | 45.0% | |
| GGAGAATAGGGTGATGAATG+TGG | - | chr3_2:83346727-83346746 | None:intergenic | 45.0% | |
| TGATAACCGTACAATGAGCC+CGG | + | chr3_2:83347140-83347159 | Msa0431280:intron | 45.0% | |
| TCAGAATCAAGCGTTCACTG+AGG | + | chr3_2:83347556-83347575 | Msa0431280:CDS | 45.0% | |
| ATGATTCGAAGAGAAGGGCT+AGG | + | chr3_2:83347582-83347601 | Msa0431280:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 83346462 | 83347901 | 83346462 | ID=Msa0431280;Name=Msa0431280 |
| chr3_2 | mRNA | 83346462 | 83347901 | 83346462 | ID=Msa0431280-mRNA-1;Parent=Msa0431280;Name=Msa0431280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=155|1|0.5|1|1|1|2|0|268 |
| chr3_2 | exon | 83346462 | 83346951 | 83346462 | ID=Msa0431280-mRNA-1:exon:23202;Parent=Msa0431280-mRNA-1 |
| chr3_2 | exon | 83347430 | 83347901 | 83347430 | ID=Msa0431280-mRNA-1:exon:23203;Parent=Msa0431280-mRNA-1 |
| chr3_2 | five_prime_UTR | 83346462 | 83346616 | 83346462 | ID=Msa0431280-mRNA-1:five_prime_utr;Parent=Msa0431280-mRNA-1 |
| chr3_2 | CDS | 83346617 | 83346951 | 83346617 | ID=Msa0431280-mRNA-1:cds;Parent=Msa0431280-mRNA-1 |
| chr3_2 | CDS | 83347430 | 83347901 | 83347430 | ID=Msa0431280-mRNA-1:cds;Parent=Msa0431280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
