AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0520510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520510 MtrunA17_Chr3g0136271 93.680 269 16 1 1 268 1 269 0.0 499
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520510 AT1G76880.1 39.474 76 46 0 187 262 256 331 8.49e-11 62.4

Find 55 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTTGGGGTTAAGATATT+TGG 0.163691 3_4:+73052422 None:intergenic
ACAACAACAAACACATTCTT+TGG 0.164595 3_4:-73052258 Msa0520510:CDS
GATGCGAAAGAAGAGATTTA+AGG 0.234830 3_4:-73051533 Msa0520510:CDS
GGATACAGAGGGAAGAAAAT+TGG 0.293718 3_4:-73051396 Msa0520510:CDS
TTCTTGATAAAGGATGTTAT+TGG 0.304540 3_4:+73052487 None:intergenic
TGAGTTTCTGTTCTTGATAA+AGG 0.309215 3_4:+73052477 None:intergenic
TAGGGTGATGAATGTGGTTT+GGG 0.329828 3_4:+73052408 None:intergenic
TCCAGCATTGAGAAAATAAC+TGG 0.347658 3_4:-73051283 Msa0520510:CDS
AAATGGACTAATAGCCTGTT+TGG 0.354835 3_4:+73052652 None:intergenic
GACTAATAGCCTGTTTGGTT+TGG 0.357432 3_4:+73052657 None:intergenic
AAACAGGCTATTAGTCCATT+TGG 0.367088 3_4:-73052650 Msa0520510:five_prime_UTR
AATGATAGTGTTGGAGAATA+GGG 0.371956 3_4:+73052390 None:intergenic
TTATTGGCCATTTCATTGTA+AGG 0.397080 3_4:+73052503 None:intergenic
GGAAAACAACGAGAGATGTT+TGG 0.402412 3_4:-73051656 Msa0520510:CDS
ATTTGGAGGGTTGTTGAGAA+TGG 0.405149 3_4:+73052439 None:intergenic
TAATAGCCTGTTTGGTTTGG+CGG 0.416227 3_4:+73052660 None:intergenic
TTGGTGATTAACCACAGTTT+TGG 0.419669 3_4:+73051471 None:intergenic
TAATGATAGTGTTGGAGAAT+AGG 0.423149 3_4:+73052389 None:intergenic
GGTTCTTCAGAAGAAATTGT+TGG 0.438181 3_4:-73051446 Msa0520510:CDS
CTAGATGATACAAGAAAGAA+TGG 0.440306 3_4:+73052583 None:intergenic
CAACAACAAACACATTCTTT+GGG 0.448951 3_4:-73052257 Msa0520510:CDS
TGAGAATGGAACCATCATCT+AGG 0.456014 3_4:+73052453 None:intergenic
TTGGTTTCCGACAACAACTT+TGG 0.462012 3_4:-73051637 Msa0520510:CDS
ATAGGGTGATGAATGTGGTT+TGG 0.467705 3_4:+73052407 None:intergenic
GTTGGAGGTGATTGATAGAA+TGG 0.468582 3_4:-73051428 Msa0520510:CDS
GTGATGGTTGAAATTTATGT+TGG 0.470837 3_4:+73052282 None:intergenic
ATTTCTTCTGAAGAACCTCT+TGG 0.473081 3_4:+73051452 None:intergenic
AAGCTCACCAAAGTTGTTGT+CGG 0.473825 3_4:+73051630 None:intergenic
TAGCCTGTTTGGTTTGGCGG+TGG 0.477929 3_4:+73052663 None:intergenic
TGTGTTTGTTGTTGTTGTGA+TGG 0.481062 3_4:+73052266 None:intergenic
ATCCCACCGCCAAACCAAAC+AGG 0.482802 3_4:-73052666 Msa0520510:five_prime_UTR
CTTGAAGCTGTGTACAAACT+TGG 0.499197 3_4:-73051610 Msa0520510:CDS
TTTGGGGTTAAGATATTTGG+AGG 0.499198 3_4:+73052425 None:intergenic
AGCCTGTTTGGTTTGGCGGT+GGG 0.513846 3_4:+73052664 None:intergenic
GATGCAGCCTTACAATGAAA+TGG 0.518773 3_4:-73052510 Msa0520510:CDS
ACACTTAAGATTCAATGCTC+TGG 0.534328 3_4:+73052536 None:intergenic
AGGAACATGATTCGAAGAGA+AGG 0.540619 3_4:-73051567 Msa0520510:CDS
CAGAAACTCACCCTAGATGA+TGG 0.541007 3_4:-73052464 Msa0520510:CDS
GGAAGACTGAAAGAACCAAA+TGG 0.541750 3_4:+73052635 None:intergenic
ATGATTCGAAGAGAAGGGCT+AGG 0.550539 3_4:-73051561 Msa0520510:CDS
TCTTCAGAAGAAATTGTTGG+AGG 0.567079 3_4:-73051443 Msa0520510:CDS
GAGAATGGAACCATCATCTA+GGG 0.574060 3_4:+73052454 None:intergenic
GGAACATGATTCGAAGAGAA+GGG 0.586343 3_4:-73051566 Msa0520510:CDS
GGAGAATAGGGTGATGAATG+TGG 0.595952 3_4:+73052402 None:intergenic
TTGGGGTTAAGATATTTGGA+GGG 0.596919 3_4:+73052426 None:intergenic
TAGATGATACAAGAAAGAAT+GGG 0.601225 3_4:+73052584 None:intergenic
TAAAAGATTGACCAAAACTG+TGG 0.602456 3_4:-73051482 Msa0520510:CDS
AATCGTTACATCAAATGCGA+AGG 0.602958 3_4:-73052221 Msa0520510:CDS
TACAGAGGGAAGAAAATTGG+AGG 0.605765 3_4:-73051393 Msa0520510:CDS
CAGGAAAGCATTCAACAACA+CGG 0.615004 3_4:-73051716 Msa0520510:CDS
ACACACAACAACAGAAAGAA+CGG 0.629520 3_4:-73052349 Msa0520510:CDS
ATTGTGAGTAATGATAGTGT+TGG 0.653355 3_4:+73052381 None:intergenic
AACTGTGGTTAATCACCAAG+AGG 0.665729 3_4:-73051467 Msa0520510:CDS
AGGGTGATGAATGTGGTTTG+GGG 0.692532 3_4:+73052409 None:intergenic
TCAGAATCAAGCGTTCACTG+AGG 0.786263 3_4:-73051587 Msa0520510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTCATTAAAAATATTTATCA+AGG + chr3_4:73052106-73052125 None:intergenic 15.0%
!! GTCATTAAAAATATTTATCA+AGG + chr3_4:73052106-73052125 None:intergenic 15.0%
!!! ACATTTTTATCAATCATATG+AGG - chr3_4:73051619-73051638 Msa0520510:CDS 20.0%
!! AATATTTATCAAGGATTGAT+AGG + chr3_4:73052097-73052116 None:intergenic 20.0%
!!! ACATTTTTATCAATCATATG+AGG - chr3_4:73051619-73051638 Msa0520510:CDS 20.0%
!! AATATTTATCAAGGATTGAT+AGG + chr3_4:73052097-73052116 None:intergenic 20.0%
!! AAATAGTACATTTGCGTTTT+TGG + chr3_4:73051317-73051336 None:intergenic 25.0%
! TAGATGATACAAGAAAGAAT+GGG + chr3_4:73051347-73051366 None:intergenic 25.0%
! TTCTTGATAAAGGATGTTAT+TGG + chr3_4:73051444-73051463 None:intergenic 25.0%
! GAATTACCAAAAAGATACTT+TGG + chr3_4:73051741-73051760 None:intergenic 25.0%
!!! GGTGTTAGTTTTATAAAGAA+AGG + chr3_4:73051874-73051893 None:intergenic 25.0%
! CAGAACATGTTATATAATGT+GGG + chr3_4:73051907-73051926 None:intergenic 25.0%
! TCAGAACATGTTATATAATG+TGG + chr3_4:73051908-73051927 None:intergenic 25.0%
! ACAAACATACATAATGTGAT+AGG + chr3_4:73052181-73052200 None:intergenic 25.0%
! AGAAAAACAACAACATGAAA+AGG - chr3_4:73052251-73052270 Msa0520510:CDS 25.0%
! TTGATAGAATGGAAAAAGAA+AGG - chr3_4:73052511-73052530 Msa0520510:CDS 25.0%
!! AAATAGTACATTTGCGTTTT+TGG + chr3_4:73051317-73051336 None:intergenic 25.0%
! TAGATGATACAAGAAAGAAT+GGG + chr3_4:73051347-73051366 None:intergenic 25.0%
! TTCTTGATAAAGGATGTTAT+TGG + chr3_4:73051444-73051463 None:intergenic 25.0%
! GAATTACCAAAAAGATACTT+TGG + chr3_4:73051741-73051760 None:intergenic 25.0%
!!! GGTGTTAGTTTTATAAAGAA+AGG + chr3_4:73051874-73051893 None:intergenic 25.0%
! CAGAACATGTTATATAATGT+GGG + chr3_4:73051907-73051926 None:intergenic 25.0%
! TCAGAACATGTTATATAATG+TGG + chr3_4:73051908-73051927 None:intergenic 25.0%
! ACAAACATACATAATGTGAT+AGG + chr3_4:73052181-73052200 None:intergenic 25.0%
! AGAAAAACAACAACATGAAA+AGG - chr3_4:73052251-73052270 Msa0520510:CDS 25.0%
! TTGATAGAATGGAAAAAGAA+AGG - chr3_4:73052511-73052530 Msa0520510:CDS 25.0%
CTAGATGATACAAGAAAGAA+TGG + chr3_4:73051348-73051367 None:intergenic 30.0%
TTATTGGCCATTTCATTGTA+AGG + chr3_4:73051428-73051447 None:intergenic 30.0%
TGAGTTTCTGTTCTTGATAA+AGG + chr3_4:73051454-73051473 None:intergenic 30.0%
! AATGATAGTGTTGGAGAATA+GGG + chr3_4:73051541-73051560 None:intergenic 30.0%
! TAATGATAGTGTTGGAGAAT+AGG + chr3_4:73051542-73051561 None:intergenic 30.0%
! ATTGTGAGTAATGATAGTGT+TGG + chr3_4:73051550-73051569 None:intergenic 30.0%
GTGATGGTTGAAATTTATGT+TGG + chr3_4:73051649-73051668 None:intergenic 30.0%
ACAACAACAAACACATTCTT+TGG - chr3_4:73051670-73051689 Msa0520510:CDS 30.0%
CAACAACAAACACATTCTTT+GGG - chr3_4:73051671-73051690 Msa0520510:CDS 30.0%
CAGATTTGTACATTTATTCC+GGG + chr3_4:73051946-73051965 None:intergenic 30.0%
CCAGATTTGTACATTTATTC+CGG + chr3_4:73051947-73051966 None:intergenic 30.0%
TACTACCCATATTGATGTAT+TGG - chr3_4:73051999-73052018 Msa0520510:intron 30.0%
CAAGACCAATACATCAATAT+GGG + chr3_4:73052007-73052026 None:intergenic 30.0%
TTGATAGGCAAATAGATCAT+TGG + chr3_4:73052082-73052101 None:intergenic 30.0%
CACATTATGTATGTTTGTGT+TGG - chr3_4:73052183-73052202 Msa0520510:intron 30.0%
TAAAAGATTGACCAAAACTG+TGG - chr3_4:73052446-73052465 Msa0520510:CDS 30.0%
CTAGATGATACAAGAAAGAA+TGG + chr3_4:73051348-73051367 None:intergenic 30.0%
TTATTGGCCATTTCATTGTA+AGG + chr3_4:73051428-73051447 None:intergenic 30.0%
TGAGTTTCTGTTCTTGATAA+AGG + chr3_4:73051454-73051473 None:intergenic 30.0%
! AATGATAGTGTTGGAGAATA+GGG + chr3_4:73051541-73051560 None:intergenic 30.0%
! TAATGATAGTGTTGGAGAAT+AGG + chr3_4:73051542-73051561 None:intergenic 30.0%
! ATTGTGAGTAATGATAGTGT+TGG + chr3_4:73051550-73051569 None:intergenic 30.0%
GTGATGGTTGAAATTTATGT+TGG + chr3_4:73051649-73051668 None:intergenic 30.0%
ACAACAACAAACACATTCTT+TGG - chr3_4:73051670-73051689 Msa0520510:CDS 30.0%
CAACAACAAACACATTCTTT+GGG - chr3_4:73051671-73051690 Msa0520510:CDS 30.0%
CAGATTTGTACATTTATTCC+GGG + chr3_4:73051946-73051965 None:intergenic 30.0%
CCAGATTTGTACATTTATTC+CGG + chr3_4:73051947-73051966 None:intergenic 30.0%
TACTACCCATATTGATGTAT+TGG - chr3_4:73051999-73052018 Msa0520510:intron 30.0%
CAAGACCAATACATCAATAT+GGG + chr3_4:73052007-73052026 None:intergenic 30.0%
TTGATAGGCAAATAGATCAT+TGG + chr3_4:73052082-73052101 None:intergenic 30.0%
CACATTATGTATGTTTGTGT+TGG - chr3_4:73052183-73052202 Msa0520510:intron 30.0%
TAAAAGATTGACCAAAACTG+TGG - chr3_4:73052446-73052465 Msa0520510:CDS 30.0%
!! AAATGGACTAATAGCCTGTT+TGG + chr3_4:73051279-73051298 None:intergenic 35.0%
AAACAGGCTATTAGTCCATT+TGG - chr3_4:73051278-73051297 Msa0520510:CDS 35.0%
ACACTTAAGATTCAATGCTC+TGG + chr3_4:73051395-73051414 None:intergenic 35.0%
TTGGGGTTAAGATATTTGGA+GGG + chr3_4:73051505-73051524 None:intergenic 35.0%
! TTTGGGGTTAAGATATTTGG+AGG + chr3_4:73051506-73051525 None:intergenic 35.0%
! TGGTTTGGGGTTAAGATATT+TGG + chr3_4:73051509-73051528 None:intergenic 35.0%
ACACACAACAACAGAAAGAA+CGG - chr3_4:73051579-73051598 Msa0520510:CDS 35.0%
!! TGTGTTTGTTGTTGTTGTGA+TGG + chr3_4:73051665-73051684 None:intergenic 35.0%
AATCGTTACATCAAATGCGA+AGG - chr3_4:73051707-73051726 Msa0520510:CDS 35.0%
CCAAAAAGATACTTTGGCAT+TGG + chr3_4:73051735-73051754 None:intergenic 35.0%
!! CCAATGCCAAAGTATCTTTT+TGG - chr3_4:73051732-73051751 Msa0520510:intron 35.0%
TATAATGTGGGTGTATATGC+TGG + chr3_4:73051895-73051914 None:intergenic 35.0%
CCGGAATAAATGTACAAATC+TGG - chr3_4:73051944-73051963 Msa0520510:intron 35.0%
GCAAGACCAATACATCAATA+TGG + chr3_4:73052008-73052027 None:intergenic 35.0%
GCAATTAGTACAGGTGATAT+AGG - chr3_4:73052056-73052075 Msa0520510:intron 35.0%
!! ATGTTTGTGTTGGCATTTTC+AGG - chr3_4:73052193-73052212 Msa0520510:intron 35.0%
GATGCGAAAGAAGAGATTTA+AGG - chr3_4:73052395-73052414 Msa0520510:CDS 35.0%
!! TTGGTGATTAACCACAGTTT+TGG + chr3_4:73052460-73052479 None:intergenic 35.0%
! ATTTCTTCTGAAGAACCTCT+TGG + chr3_4:73052479-73052498 None:intergenic 35.0%
GGTTCTTCAGAAGAAATTGT+TGG - chr3_4:73052482-73052501 Msa0520510:CDS 35.0%
TCTTCAGAAGAAATTGTTGG+AGG - chr3_4:73052485-73052504 Msa0520510:CDS 35.0%
TGGAAAAAGAAAGGATACAG+AGG - chr3_4:73052520-73052539 Msa0520510:exon 35.0%
GGAAAAAGAAAGGATACAGA+GGG - chr3_4:73052521-73052540 Msa0520510:exon 35.0%
! TCCAGCATTGAGAAAATAAC+TGG - chr3_4:73052645-73052664 Msa0520510:five_prime_UTR 35.0%
!! ACCAGTTATTTTCTCAATGC+TGG + chr3_4:73052649-73052668 None:intergenic 35.0%
!! AAATGGACTAATAGCCTGTT+TGG + chr3_4:73051279-73051298 None:intergenic 35.0%
AAACAGGCTATTAGTCCATT+TGG - chr3_4:73051278-73051297 Msa0520510:CDS 35.0%
ACACTTAAGATTCAATGCTC+TGG + chr3_4:73051395-73051414 None:intergenic 35.0%
TTGGGGTTAAGATATTTGGA+GGG + chr3_4:73051505-73051524 None:intergenic 35.0%
! TTTGGGGTTAAGATATTTGG+AGG + chr3_4:73051506-73051525 None:intergenic 35.0%
! TGGTTTGGGGTTAAGATATT+TGG + chr3_4:73051509-73051528 None:intergenic 35.0%
ACACACAACAACAGAAAGAA+CGG - chr3_4:73051579-73051598 Msa0520510:CDS 35.0%
!! TGTGTTTGTTGTTGTTGTGA+TGG + chr3_4:73051665-73051684 None:intergenic 35.0%
AATCGTTACATCAAATGCGA+AGG - chr3_4:73051707-73051726 Msa0520510:CDS 35.0%
CCAAAAAGATACTTTGGCAT+TGG + chr3_4:73051735-73051754 None:intergenic 35.0%
!! CCAATGCCAAAGTATCTTTT+TGG - chr3_4:73051732-73051751 Msa0520510:intron 35.0%
TATAATGTGGGTGTATATGC+TGG + chr3_4:73051895-73051914 None:intergenic 35.0%
CCGGAATAAATGTACAAATC+TGG - chr3_4:73051944-73051963 Msa0520510:intron 35.0%
GCAAGACCAATACATCAATA+TGG + chr3_4:73052008-73052027 None:intergenic 35.0%
GCAATTAGTACAGGTGATAT+AGG - chr3_4:73052056-73052075 Msa0520510:intron 35.0%
!! ATGTTTGTGTTGGCATTTTC+AGG - chr3_4:73052193-73052212 Msa0520510:intron 35.0%
GATGCGAAAGAAGAGATTTA+AGG - chr3_4:73052395-73052414 Msa0520510:CDS 35.0%
!! TTGGTGATTAACCACAGTTT+TGG + chr3_4:73052460-73052479 None:intergenic 35.0%
! ATTTCTTCTGAAGAACCTCT+TGG + chr3_4:73052479-73052498 None:intergenic 35.0%
GGTTCTTCAGAAGAAATTGT+TGG - chr3_4:73052482-73052501 Msa0520510:CDS 35.0%
TCTTCAGAAGAAATTGTTGG+AGG - chr3_4:73052485-73052504 Msa0520510:CDS 35.0%
TGGAAAAAGAAAGGATACAG+AGG - chr3_4:73052520-73052539 Msa0520510:exon 35.0%
GGAAAAAGAAAGGATACAGA+GGG - chr3_4:73052521-73052540 Msa0520510:exon 35.0%
! TCCAGCATTGAGAAAATAAC+TGG - chr3_4:73052645-73052664 Msa0520510:five_prime_UTR 35.0%
!! ACCAGTTATTTTCTCAATGC+TGG + chr3_4:73052649-73052668 None:intergenic 35.0%
!! TAATAGCCTGTTTGGTTTGG+CGG + chr3_4:73051271-73051290 None:intergenic 40.0%
GACTAATAGCCTGTTTGGTT+TGG + chr3_4:73051274-73051293 None:intergenic 40.0%
GGAAGACTGAAAGAACCAAA+TGG + chr3_4:73051296-73051315 None:intergenic 40.0%
GATGCAGCCTTACAATGAAA+TGG - chr3_4:73051418-73051437 Msa0520510:CDS 40.0%
GAGAATGGAACCATCATCTA+GGG + chr3_4:73051477-73051496 None:intergenic 40.0%
TGAGAATGGAACCATCATCT+AGG + chr3_4:73051478-73051497 None:intergenic 40.0%
ATTTGGAGGGTTGTTGAGAA+TGG + chr3_4:73051492-73051511 None:intergenic 40.0%
TAGGGTGATGAATGTGGTTT+GGG + chr3_4:73051523-73051542 None:intergenic 40.0%
ATAGGGTGATGAATGTGGTT+TGG + chr3_4:73051524-73051543 None:intergenic 40.0%
TTTATTCCGGGCTCATTGTA+CGG + chr3_4:73051934-73051953 None:intergenic 40.0%
! GTACAAATCTGGTTAGCTCA+TGG - chr3_4:73051955-73051974 Msa0520510:intron 40.0%
TTCGCTTTCGCAATTAGTAC+AGG - chr3_4:73052047-73052066 Msa0520510:intron 40.0%
!! CAGGAAAGCATTCAACAACA+CGG - chr3_4:73052212-73052231 Msa0520510:CDS 40.0%
GGAAAACAACGAGAGATGTT+TGG - chr3_4:73052272-73052291 Msa0520510:CDS 40.0%
TTGGTTTCCGACAACAACTT+TGG - chr3_4:73052291-73052310 Msa0520510:CDS 40.0%
AAGCTCACCAAAGTTGTTGT+CGG + chr3_4:73052301-73052320 None:intergenic 40.0%
CTTGAAGCTGTGTACAAACT+TGG - chr3_4:73052318-73052337 Msa0520510:CDS 40.0%
AGGAACATGATTCGAAGAGA+AGG - chr3_4:73052361-73052380 Msa0520510:CDS 40.0%
GGAACATGATTCGAAGAGAA+GGG - chr3_4:73052362-73052381 Msa0520510:CDS 40.0%
AACTGTGGTTAATCACCAAG+AGG - chr3_4:73052461-73052480 Msa0520510:CDS 40.0%
GTTGGAGGTGATTGATAGAA+TGG - chr3_4:73052500-73052519 Msa0520510:CDS 40.0%
GGATACAGAGGGAAGAAAAT+TGG - chr3_4:73052532-73052551 Msa0520510:five_prime_UTR 40.0%
TACAGAGGGAAGAAAATTGG+AGG - chr3_4:73052535-73052554 Msa0520510:five_prime_UTR 40.0%
! GTGAGCGTGATTTTGCTAAA+CGG - chr3_4:73052604-73052623 Msa0520510:five_prime_UTR 40.0%
!! TAATAGCCTGTTTGGTTTGG+CGG + chr3_4:73051271-73051290 None:intergenic 40.0%
GACTAATAGCCTGTTTGGTT+TGG + chr3_4:73051274-73051293 None:intergenic 40.0%
GGAAGACTGAAAGAACCAAA+TGG + chr3_4:73051296-73051315 None:intergenic 40.0%
GATGCAGCCTTACAATGAAA+TGG - chr3_4:73051418-73051437 Msa0520510:CDS 40.0%
GAGAATGGAACCATCATCTA+GGG + chr3_4:73051477-73051496 None:intergenic 40.0%
TGAGAATGGAACCATCATCT+AGG + chr3_4:73051478-73051497 None:intergenic 40.0%
ATTTGGAGGGTTGTTGAGAA+TGG + chr3_4:73051492-73051511 None:intergenic 40.0%
TAGGGTGATGAATGTGGTTT+GGG + chr3_4:73051523-73051542 None:intergenic 40.0%
ATAGGGTGATGAATGTGGTT+TGG + chr3_4:73051524-73051543 None:intergenic 40.0%
TTTATTCCGGGCTCATTGTA+CGG + chr3_4:73051934-73051953 None:intergenic 40.0%
! GTACAAATCTGGTTAGCTCA+TGG - chr3_4:73051955-73051974 Msa0520510:intron 40.0%
TTCGCTTTCGCAATTAGTAC+AGG - chr3_4:73052047-73052066 Msa0520510:intron 40.0%
!! CAGGAAAGCATTCAACAACA+CGG - chr3_4:73052212-73052231 Msa0520510:CDS 40.0%
GGAAAACAACGAGAGATGTT+TGG - chr3_4:73052272-73052291 Msa0520510:CDS 40.0%
TTGGTTTCCGACAACAACTT+TGG - chr3_4:73052291-73052310 Msa0520510:CDS 40.0%
AAGCTCACCAAAGTTGTTGT+CGG + chr3_4:73052301-73052320 None:intergenic 40.0%
CTTGAAGCTGTGTACAAACT+TGG - chr3_4:73052318-73052337 Msa0520510:CDS 40.0%
AGGAACATGATTCGAAGAGA+AGG - chr3_4:73052361-73052380 Msa0520510:CDS 40.0%
GGAACATGATTCGAAGAGAA+GGG - chr3_4:73052362-73052381 Msa0520510:CDS 40.0%
AACTGTGGTTAATCACCAAG+AGG - chr3_4:73052461-73052480 Msa0520510:CDS 40.0%
GTTGGAGGTGATTGATAGAA+TGG - chr3_4:73052500-73052519 Msa0520510:CDS 40.0%
GGATACAGAGGGAAGAAAAT+TGG - chr3_4:73052532-73052551 Msa0520510:five_prime_UTR 40.0%
TACAGAGGGAAGAAAATTGG+AGG - chr3_4:73052535-73052554 Msa0520510:five_prime_UTR 40.0%
! GTGAGCGTGATTTTGCTAAA+CGG - chr3_4:73052604-73052623 Msa0520510:five_prime_UTR 40.0%
CAGAAACTCACCCTAGATGA+TGG - chr3_4:73051464-73051483 Msa0520510:CDS 45.0%
AGGGTGATGAATGTGGTTTG+GGG + chr3_4:73051522-73051541 None:intergenic 45.0%
GGAGAATAGGGTGATGAATG+TGG + chr3_4:73051529-73051548 None:intergenic 45.0%
TGATAACCGTACAATGAGCC+CGG - chr3_4:73051925-73051944 Msa0520510:intron 45.0%
TCAGAATCAAGCGTTCACTG+AGG - chr3_4:73052341-73052360 Msa0520510:CDS 45.0%
ATGATTCGAAGAGAAGGGCT+AGG - chr3_4:73052367-73052386 Msa0520510:CDS 45.0%
CAGAAACTCACCCTAGATGA+TGG - chr3_4:73051464-73051483 Msa0520510:CDS 45.0%
AGGGTGATGAATGTGGTTTG+GGG + chr3_4:73051522-73051541 None:intergenic 45.0%
GGAGAATAGGGTGATGAATG+TGG + chr3_4:73051529-73051548 None:intergenic 45.0%
TGATAACCGTACAATGAGCC+CGG - chr3_4:73051925-73051944 Msa0520510:intron 45.0%
TCAGAATCAAGCGTTCACTG+AGG - chr3_4:73052341-73052360 Msa0520510:CDS 45.0%
ATGATTCGAAGAGAAGGGCT+AGG - chr3_4:73052367-73052386 Msa0520510:CDS 45.0%
!! AGCCTGTTTGGTTTGGCGGT+GGG + chr3_4:73051267-73051286 None:intergenic 55.0%
!! TAGCCTGTTTGGTTTGGCGG+TGG + chr3_4:73051268-73051287 None:intergenic 55.0%
!! AGCCTGTTTGGTTTGGCGGT+GGG + chr3_4:73051267-73051286 None:intergenic 55.0%
!! TAGCCTGTTTGGTTTGGCGG+TGG + chr3_4:73051268-73051287 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 73051264 73052686 73051264 ID=Msa0520510;Name=Msa0520510
chr3_4 mRNA 73051264 73052686 73051264 ID=Msa0520510-mRNA-1;Parent=Msa0520510;Name=Msa0520510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=155|1|0.5|1|1|1|2|0|268
chr3_4 exon 73051264 73051735 73051264 ID=Msa0520510-mRNA-1:exon:20329;Parent=Msa0520510-mRNA-1
chr3_4 exon 73052197 73052686 73052197 ID=Msa0520510-mRNA-1:exon:20328;Parent=Msa0520510-mRNA-1
chr3_4 five_prime_UTR 73052532 73052686 73052532 ID=Msa0520510-mRNA-1:five_prime_utr;Parent=Msa0520510-mRNA-1
chr3_4 CDS 73052197 73052531 73052197 ID=Msa0520510-mRNA-1:cds;Parent=Msa0520510-mRNA-1
chr3_4 CDS 73051264 73051735 73051264 ID=Msa0520510-mRNA-1:cds;Parent=Msa0520510-mRNA-1
Gene Sequence

>Msa0520510

ATGCAGCCTTACAATGAAATGGCCAATAACATCCTTTATCAAGAACAGAAACTCACCCTAGATGATGGTTCCATTCTCAACAACCCTCCAAATATCTTAACCCCAAACCACATTCATCACCCTATTCTCCAACACTATCATTACTCACAATCTTCACAGAACACACAACAACAGAAAGAACGGTGTCACGAAGAATATCAACATTTTTATCAATCATATGAGGTGCACCAACATAAATTTCAACCATCACAACAACAACAAACACATTCTTTGGGTGACATTATTGTAAATCGTTACATCAAATGCGAAGGATCCAATGCCAAAGTATCTTTTTGGAAAGCATTCAACAACACGGTGCTATGTGATGCAACAGAAAAACAACAACATGAAAAGGAAAACAACGAGAGATGTTTGGTTTCCGACAACAACTTTGGTGAGCTTGAAGCTGTGTACAAACTTGGTCAGAATCAAGCGTTCACTGAGGAACATGATTCGAAGAGAAGGGCTAGGAAGAAGATGCGAAAGAAGAGATTTAAGGAAGAAATGAGTTTGATGAGAGTGTTCTTTAAAAGATTGACCAAAACTGTGGTTAATCACCAAGAGGTTCTTCAGAAGAAATTGTTGGAGGTGATTGATAGAATGGAAAAAGAAAGGATACAGAGGGAAGAAAATTGGAGGCGTGAAGAAAGTGAAATATACGAAAGAGAAGCTGTTGTTAAAGCACGTGAGCGTGATTTTGCTAAACGGAGAGAGTCTTCTATTGTTTCCAGCATTGAGAAAATAACTGGTCGAAGATTTTCTAGTTAG

Protein sequence

>Msa0520510

MQPYNEMANNILYQEQKLTLDDGSILNNPPNILTPNHIHHPILQHYHYSQSSQNTQQQKERCHEEYQHFYQSYEVHQHKFQPSQQQQTHSLGDIIVNRYIKCEGSNAKVSFWKAFNNTVLCDATEKQQHEKENNERCLVSDNNFGELEAVYKLGQNQAFTEEHDSKRRARKKMRKKRFKEEMSLMRVFFKRLTKTVVNHQEVLQKKLLEVIDRMEKERIQREENWRREESEIYEREAVVKARERDFAKRRESSIVSSIEKITGRRFSS*