Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0520510 | XP_003603204.2 | 93.680 | 269 | 16 | 1 | 1 | 268 | 1 | 269 | 1.95e-177 | 499 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0520510 | A0A396J0V3 | 93.680 | 269 | 16 | 1 | 1 | 268 | 1 | 269 | 9.33e-178 | 499 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012440 | Msa0520510 | 0.803655 | 3.143565e-49 | -8.615850e-47 |
Msa0022640 | Msa0520510 | 0.812853 | 3.439337e-51 | -8.615850e-47 |
Msa0036430 | Msa0520510 | 0.850648 | 1.482052e-60 | -8.615850e-47 |
Msa0050040 | Msa0520510 | 0.832370 | 9.829470e-56 | -8.615850e-47 |
Msa0057240 | Msa0520510 | 0.808263 | 3.374890e-50 | -8.615850e-47 |
Msa0084500 | Msa0520510 | 0.863873 | 1.824361e-64 | -8.615850e-47 |
Msa0098440 | Msa0520510 | 0.806096 | 9.708708e-50 | -8.615850e-47 |
Msa0102990 | Msa0520510 | 0.832274 | 1.037846e-55 | -8.615850e-47 |
Msa0106790 | Msa0520510 | 0.810827 | 9.499447e-51 | -8.615850e-47 |
Msa0130570 | Msa0520510 | 0.847859 | 8.857161e-60 | -8.615850e-47 |
Msa0141100 | Msa0520510 | 0.808488 | 3.021837e-50 | -8.615850e-47 |
Msa0149560 | Msa0520510 | 0.811885 | 5.596122e-51 | -8.615850e-47 |
Msa0153420 | Msa0520510 | 0.842845 | 2.016746e-58 | -8.615850e-47 |
Msa0161680 | Msa0520510 | 0.816657 | 4.939678e-52 | -8.615850e-47 |
Msa0176470 | Msa0520510 | 0.884131 | 2.490843e-71 | -8.615850e-47 |
Msa0191040 | Msa0520510 | 0.857513 | 1.550813e-62 | -8.615850e-47 |
Msa0194380 | Msa0520510 | 0.854190 | 1.451858e-61 | -8.615850e-47 |
Msa0203030 | Msa0520510 | 0.863474 | 2.426815e-64 | -8.615850e-47 |
Msa0206800 | Msa0520510 | 0.848601 | 5.525269e-60 | -8.615850e-47 |
Msa0219190 | Msa0520510 | 0.839966 | 1.154499e-57 | -8.615850e-47 |
Msa0220300 | Msa0520510 | 0.818169 | 2.254688e-52 | -8.615850e-47 |
Msa0233340 | Msa0520510 | 0.856992 | 2.210952e-62 | -8.615850e-47 |
Msa0236110 | Msa0520510 | 0.851325 | 9.550518e-61 | -8.615850e-47 |
Msa0373960 | Msa0520510 | 0.857697 | 1.368368e-62 | -8.615850e-47 |
Msa0374850 | Msa0520510 | 0.811467 | 6.898464e-51 | -8.615850e-47 |
Msa0382010 | Msa0520510 | 0.912401 | 2.031148e-83 | -8.615850e-47 |
Msa0413930 | Msa0520510 | 0.825370 | 4.864296e-54 | -8.615850e-47 |
Msa0423100 | Msa0520510 | 0.864356 | 1.289718e-64 | -8.615850e-47 |
Msa0431280 | Msa0520510 | 0.806959 | 6.386023e-50 | -8.615850e-47 |
Msa0436500 | Msa0520510 | 0.829247 | 5.728605e-55 | -8.615850e-47 |
Msa0441590 | Msa0520510 | 0.829639 | 4.600636e-55 | -8.615850e-47 |
Msa0464540 | Msa0520510 | 0.810934 | 9.002369e-51 | -8.615850e-47 |
Msa0469260 | Msa0520510 | 0.851568 | 8.151808e-61 | -8.615850e-47 |
Msa0476590 | Msa0520510 | 0.901907 | 1.664766e-78 | -8.615850e-47 |
Msa0481110 | Msa0520510 | 0.803228 | 3.852570e-49 | -8.615850e-47 |
Msa0251240 | Msa0520510 | 0.825265 | 5.149577e-54 | -8.615850e-47 |
Msa0252630 | Msa0520510 | 0.812706 | 3.704601e-51 | -8.615850e-47 |
Msa0273990 | Msa0520510 | 0.843256 | 1.566658e-58 | -8.615850e-47 |
Msa0277290 | Msa0520510 | 0.835282 | 1.837277e-56 | -8.615850e-47 |
Msa0288190 | Msa0520510 | 0.841037 | 6.057264e-58 | -8.615850e-47 |
Msa0288200 | Msa0520510 | 0.842377 | 2.684155e-58 | -8.615850e-47 |
Msa0298240 | Msa0520510 | 0.837073 | 6.443190e-57 | -8.615850e-47 |
Msa0311690 | Msa0520510 | 0.856246 | 3.663698e-62 | -8.615850e-47 |
Msa0314630 | Msa0520510 | 0.857298 | 1.795715e-62 | -8.615850e-47 |
Msa0315250 | Msa0520510 | 0.813536 | 2.436009e-51 | -8.615850e-47 |
Msa0322830 | Msa0520510 | 0.821220 | 4.534197e-53 | -8.615850e-47 |
Msa0322840 | Msa0520510 | 0.823033 | 1.722261e-53 | -8.615850e-47 |
Msa0322860 | Msa0520510 | 0.837101 | 6.338965e-57 | -8.615850e-47 |
Msa0326540 | Msa0520510 | 0.835002 | 2.161911e-56 | -8.615850e-47 |
Msa0331530 | Msa0520510 | 0.814658 | 1.377012e-51 | -8.615850e-47 |
Msa0331540 | Msa0520510 | 0.807331 | 5.326500e-50 | -8.615850e-47 |
Msa0334500 | Msa0520510 | 0.826752 | 2.282800e-54 | -8.615850e-47 |
Msa0351770 | Msa0520510 | 0.825647 | 4.183394e-54 | -8.615850e-47 |
Msa0520510 | Msa0531430 | 0.824574 | 7.498309e-54 | -8.615850e-47 |
Msa0520510 | Msa0534570 | 0.836919 | 7.056797e-57 | -8.615850e-47 |
Msa0520510 | Msa0534590 | 0.829732 | 4.365412e-55 | -8.615850e-47 |
Msa0520510 | Msa0535040 | 0.803619 | 3.197661e-49 | -8.615850e-47 |
Msa0520510 | Msa0560070 | 0.809433 | 1.896626e-50 | -8.615850e-47 |
Msa0520510 | Msa0575740 | 0.817013 | 4.110197e-52 | -8.615850e-47 |
Msa0520510 | Msa0590800 | 0.815583 | 8.580742e-52 | -8.615850e-47 |
Msa0520510 | Msa0591800 | 0.829861 | 4.061204e-55 | -8.615850e-47 |
Msa0520510 | Msa0611380 | 0.833351 | 5.607502e-56 | -8.615850e-47 |
Msa0520510 | Msa0622410 | 0.841032 | 6.074736e-58 | -8.615850e-47 |
Msa0520510 | Msa0628640 | 0.813485 | 2.499667e-51 | -8.615850e-47 |
Msa0520510 | Msa0631120 | 0.830611 | 2.663312e-55 | -8.615850e-47 |
Msa0520510 | Msa0663680 | 0.800357 | 1.497048e-48 | -8.615850e-47 |
Msa0520510 | Msa0666030 | 0.821806 | 3.319081e-53 | -8.615850e-47 |
Msa0520510 | Msa0667850 | 0.860854 | 1.544869e-63 | -8.615850e-47 |
Msa0520510 | Msa0669340 | 0.820730 | 5.878875e-53 | -8.615850e-47 |
Msa0520510 | Msa0669840 | 0.842223 | 2.948816e-58 | -8.615850e-47 |
Msa0520510 | Msa0691160 | 0.829405 | 5.242553e-55 | -8.615850e-47 |
Msa0520510 | Msa0707220 | 0.822583 | 2.192080e-53 | -8.615850e-47 |
Msa0520510 | Msa0716450 | 0.823164 | 1.605014e-53 | -8.615850e-47 |
Msa0520510 | Msa0717260 | 0.817683 | 2.903286e-52 | -8.615850e-47 |
Msa0520510 | Msa0739480 | 0.806748 | 7.074254e-50 | -8.615850e-47 |
Msa0520510 | Msa0741900 | 0.844639 | 6.675526e-59 | -8.615850e-47 |
Msa0520510 | Msa0742180 | 0.825610 | 4.267789e-54 | -8.615850e-47 |
Msa0520510 | Msa0754370 | 0.803493 | 3.394921e-49 | -8.615850e-47 |
Msa0520510 | Msa0758320 | 0.802593 | 5.211992e-49 | -8.615850e-47 |
Msa0520510 | Msa0764820 | 0.816424 | 5.569825e-52 | -8.615850e-47 |
Msa0520510 | Msa0786040 | 0.808122 | 3.616536e-50 | -8.615850e-47 |
Msa0520510 | Msa0799030 | 0.813319 | 2.718151e-51 | -8.615850e-47 |
Msa0520510 | Msa0799700 | 0.802281 | 6.043806e-49 | -8.615850e-47 |
Msa0520510 | Msa0810020 | 0.813003 | 3.189329e-51 | -8.615850e-47 |
Msa0520510 | Msa0822990 | 0.826226 | 3.047050e-54 | -8.615850e-47 |
Msa0520510 | Msa0823400 | 0.860432 | 2.074182e-63 | -8.615850e-47 |
Msa0520510 | Msa0837440 | 0.806397 | 8.391347e-50 | -8.615850e-47 |
Msa0520510 | Msa0837980 | 0.805079 | 1.586989e-49 | -8.615850e-47 |
Msa0520510 | Msa0840500 | 0.801350 | 9.384206e-49 | -8.615850e-47 |
Msa0520510 | Msa0853320 | 0.806943 | 6.435878e-50 | -8.615850e-47 |
Msa0520510 | Msa0858840 | 0.815298 | 9.930585e-52 | -8.615850e-47 |
Msa0520510 | Msa0860170 | 0.844901 | 5.672820e-59 | -8.615850e-47 |
Msa0520510 | Msa0862100 | 0.825264 | 5.154368e-54 | -8.615850e-47 |
Msa0520510 | Msa0862310 | 0.814342 | 1.617379e-51 | -8.615850e-47 |
Msa0520510 | Msa0873190 | 0.803171 | 3.958903e-49 | -8.615850e-47 |
Msa0520510 | Msa0880710 | 0.830112 | 3.527154e-55 | -8.615850e-47 |
Msa0520510 | Msa0885060 | 0.868968 | 4.400638e-66 | -8.615850e-47 |
Msa0520510 | Msa0929870 | 0.820318 | 7.306346e-53 | -8.615850e-47 |
Msa0520510 | Msa0965310 | 0.803907 | 2.785864e-49 | -8.615850e-47 |
Msa0520510 | Msa0973250 | 0.806680 | 7.314833e-50 | -8.615850e-47 |
Msa0520510 | Msa0979030 | 0.803604 | 3.220026e-49 | -8.615850e-47 |
Msa0520510 | Msa0979510 | 0.849548 | 3.012192e-60 | -8.615850e-47 |
Msa0520510 | Msa0996270 | 0.804018 | 2.642141e-49 | -8.615850e-47 |
Msa0520510 | Msa0999340 | 0.862872 | 3.726157e-64 | -8.615850e-47 |
Msa0520510 | Msa0999350 | 0.845249 | 4.568121e-59 | -8.615850e-47 |
Msa0520510 | Msa0999360 | 0.822041 | 2.928348e-53 | -8.615850e-47 |
Msa0520510 | Msa0999390 | 0.841316 | 5.116438e-58 | -8.615850e-47 |
Msa0520510 | Msa0999400 | 0.837317 | 5.581359e-57 | -8.615850e-47 |
Msa0520510 | Msa0999410 | 0.814373 | 1.592199e-51 | -8.615850e-47 |
Msa0520510 | Msa1002620 | 0.807179 | 5.734698e-50 | -8.615850e-47 |
Msa0520510 | Msa1010110 | 0.817589 | 3.049320e-52 | -8.615850e-47 |
Msa0520510 | Msa1033560 | 0.880808 | 4.045135e-70 | -8.615850e-47 |
Msa0520510 | Msa1034680 | 0.817677 | 2.913505e-52 | -8.615850e-47 |
Msa0520510 | Msa1037900 | 0.804204 | 2.416806e-49 | -8.615850e-47 |
Msa0520510 | Msa1042670 | 0.813843 | 2.084747e-51 | -8.615850e-47 |
Msa0520510 | Msa1073340 | 0.919917 | 2.470918e-87 | -8.615850e-47 |
Msa0520510 | Msa1073350 | 0.855874 | 4.705816e-62 | -8.615850e-47 |
Msa0520510 | Msa1081570 | 0.813391 | 2.621112e-51 | -8.615850e-47 |
Msa0520510 | Msa1113850 | 0.895302 | 1.090584e-75 | -8.615850e-47 |
Msa0520510 | Msa1127140 | 0.814768 | 1.301787e-51 | -8.615850e-47 |
Msa0520510 | Msa1139810 | 0.800140 | 1.657534e-48 | -8.615850e-47 |
Msa0520510 | Msa1145020 | 0.840287 | 9.519698e-58 | -8.615850e-47 |
Msa0520510 | Msa1160400 | 0.876250 | 1.621803e-68 | -8.615850e-47 |
Msa0520510 | Msa1166400 | 0.810294 | 1.238200e-50 | -8.615850e-47 |
Msa0520510 | Msa1179520 | 0.805893 | 1.071592e-49 | -8.615850e-47 |
Msa0520510 | Msa1183430 | 0.806320 | 8.709181e-50 | -8.615850e-47 |
Msa0520510 | Msa1201160 | 0.829368 | 5.354246e-55 | -8.615850e-47 |
Msa0520510 | Msa1218480 | 0.818944 | 1.504766e-52 | -8.615850e-47 |
Msa0520510 | Msa1227970 | 0.802985 | 4.326441e-49 | -8.615850e-47 |
Msa0520510 | Msa1228190 | 0.824150 | 9.435440e-54 | -8.615850e-47 |
Msa0520510 | Msa1258050 | 0.812159 | 4.876721e-51 | -8.615850e-47 |
Msa0520510 | Msa1271260 | 0.825086 | 5.678500e-54 | -8.615850e-47 |
Msa0520510 | Msa1289280 | 0.800946 | 1.135514e-48 | -8.615850e-47 |
Msa0520510 | Msa1292040 | 0.800075 | 1.708399e-48 | -8.615850e-47 |
Msa0520510 | Msa1294290 | 0.834063 | 3.722327e-56 | -8.615850e-47 |
Msa0520510 | Msa1345420 | 0.844619 | 6.756581e-59 | -8.615850e-47 |
Msa0520510 | Msa1379990 | 0.802371 | 5.791000e-49 | -8.615850e-47 |
Msa0520510 | Msa1420060 | 0.853491 | 2.307016e-61 | -8.615850e-47 |
Msa0520510 | Msa1421550 | 0.847600 | 1.043930e-59 | -8.615850e-47 |
Msa0520510 | Msa1429420 | 0.805922 | 1.056264e-49 | -8.615850e-47 |
Msa0520510 | Msa1435480 | 0.864312 | 1.331328e-64 | -8.615850e-47 |
Msa0520510 | Msa1440340 | 0.824294 | 8.723879e-54 | -8.615850e-47 |
Msa0520510 | Msa1442630 | 0.816852 | 4.466937e-52 | -8.615850e-47 |
Msa0520510 | Msa1456730 | 0.805633 | 1.215030e-49 | -8.615850e-47 |
Msa0520510 | Msa1458910 | 0.849361 | 3.398226e-60 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0520510 | MtrunA17_Chr3g0136271 | 93.680 | 269 | 16 | 1 | 1 | 268 | 1 | 269 | 0.0 | 499 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0520510 | AT1G76880.1 | 39.474 | 76 | 46 | 0 | 187 | 262 | 256 | 331 | 8.49e-11 | 62.4 |
Find 55 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTTTGGGGTTAAGATATT+TGG | 0.163691 | 3_4:+73052422 | None:intergenic |
ACAACAACAAACACATTCTT+TGG | 0.164595 | 3_4:-73052258 | Msa0520510:CDS |
GATGCGAAAGAAGAGATTTA+AGG | 0.234830 | 3_4:-73051533 | Msa0520510:CDS |
GGATACAGAGGGAAGAAAAT+TGG | 0.293718 | 3_4:-73051396 | Msa0520510:CDS |
TTCTTGATAAAGGATGTTAT+TGG | 0.304540 | 3_4:+73052487 | None:intergenic |
TGAGTTTCTGTTCTTGATAA+AGG | 0.309215 | 3_4:+73052477 | None:intergenic |
TAGGGTGATGAATGTGGTTT+GGG | 0.329828 | 3_4:+73052408 | None:intergenic |
TCCAGCATTGAGAAAATAAC+TGG | 0.347658 | 3_4:-73051283 | Msa0520510:CDS |
AAATGGACTAATAGCCTGTT+TGG | 0.354835 | 3_4:+73052652 | None:intergenic |
GACTAATAGCCTGTTTGGTT+TGG | 0.357432 | 3_4:+73052657 | None:intergenic |
AAACAGGCTATTAGTCCATT+TGG | 0.367088 | 3_4:-73052650 | Msa0520510:five_prime_UTR |
AATGATAGTGTTGGAGAATA+GGG | 0.371956 | 3_4:+73052390 | None:intergenic |
TTATTGGCCATTTCATTGTA+AGG | 0.397080 | 3_4:+73052503 | None:intergenic |
GGAAAACAACGAGAGATGTT+TGG | 0.402412 | 3_4:-73051656 | Msa0520510:CDS |
ATTTGGAGGGTTGTTGAGAA+TGG | 0.405149 | 3_4:+73052439 | None:intergenic |
TAATAGCCTGTTTGGTTTGG+CGG | 0.416227 | 3_4:+73052660 | None:intergenic |
TTGGTGATTAACCACAGTTT+TGG | 0.419669 | 3_4:+73051471 | None:intergenic |
TAATGATAGTGTTGGAGAAT+AGG | 0.423149 | 3_4:+73052389 | None:intergenic |
GGTTCTTCAGAAGAAATTGT+TGG | 0.438181 | 3_4:-73051446 | Msa0520510:CDS |
CTAGATGATACAAGAAAGAA+TGG | 0.440306 | 3_4:+73052583 | None:intergenic |
CAACAACAAACACATTCTTT+GGG | 0.448951 | 3_4:-73052257 | Msa0520510:CDS |
TGAGAATGGAACCATCATCT+AGG | 0.456014 | 3_4:+73052453 | None:intergenic |
TTGGTTTCCGACAACAACTT+TGG | 0.462012 | 3_4:-73051637 | Msa0520510:CDS |
ATAGGGTGATGAATGTGGTT+TGG | 0.467705 | 3_4:+73052407 | None:intergenic |
GTTGGAGGTGATTGATAGAA+TGG | 0.468582 | 3_4:-73051428 | Msa0520510:CDS |
GTGATGGTTGAAATTTATGT+TGG | 0.470837 | 3_4:+73052282 | None:intergenic |
ATTTCTTCTGAAGAACCTCT+TGG | 0.473081 | 3_4:+73051452 | None:intergenic |
AAGCTCACCAAAGTTGTTGT+CGG | 0.473825 | 3_4:+73051630 | None:intergenic |
TAGCCTGTTTGGTTTGGCGG+TGG | 0.477929 | 3_4:+73052663 | None:intergenic |
TGTGTTTGTTGTTGTTGTGA+TGG | 0.481062 | 3_4:+73052266 | None:intergenic |
ATCCCACCGCCAAACCAAAC+AGG | 0.482802 | 3_4:-73052666 | Msa0520510:five_prime_UTR |
CTTGAAGCTGTGTACAAACT+TGG | 0.499197 | 3_4:-73051610 | Msa0520510:CDS |
TTTGGGGTTAAGATATTTGG+AGG | 0.499198 | 3_4:+73052425 | None:intergenic |
AGCCTGTTTGGTTTGGCGGT+GGG | 0.513846 | 3_4:+73052664 | None:intergenic |
GATGCAGCCTTACAATGAAA+TGG | 0.518773 | 3_4:-73052510 | Msa0520510:CDS |
ACACTTAAGATTCAATGCTC+TGG | 0.534328 | 3_4:+73052536 | None:intergenic |
AGGAACATGATTCGAAGAGA+AGG | 0.540619 | 3_4:-73051567 | Msa0520510:CDS |
CAGAAACTCACCCTAGATGA+TGG | 0.541007 | 3_4:-73052464 | Msa0520510:CDS |
GGAAGACTGAAAGAACCAAA+TGG | 0.541750 | 3_4:+73052635 | None:intergenic |
ATGATTCGAAGAGAAGGGCT+AGG | 0.550539 | 3_4:-73051561 | Msa0520510:CDS |
TCTTCAGAAGAAATTGTTGG+AGG | 0.567079 | 3_4:-73051443 | Msa0520510:CDS |
GAGAATGGAACCATCATCTA+GGG | 0.574060 | 3_4:+73052454 | None:intergenic |
GGAACATGATTCGAAGAGAA+GGG | 0.586343 | 3_4:-73051566 | Msa0520510:CDS |
GGAGAATAGGGTGATGAATG+TGG | 0.595952 | 3_4:+73052402 | None:intergenic |
TTGGGGTTAAGATATTTGGA+GGG | 0.596919 | 3_4:+73052426 | None:intergenic |
TAGATGATACAAGAAAGAAT+GGG | 0.601225 | 3_4:+73052584 | None:intergenic |
TAAAAGATTGACCAAAACTG+TGG | 0.602456 | 3_4:-73051482 | Msa0520510:CDS |
AATCGTTACATCAAATGCGA+AGG | 0.602958 | 3_4:-73052221 | Msa0520510:CDS |
TACAGAGGGAAGAAAATTGG+AGG | 0.605765 | 3_4:-73051393 | Msa0520510:CDS |
CAGGAAAGCATTCAACAACA+CGG | 0.615004 | 3_4:-73051716 | Msa0520510:CDS |
ACACACAACAACAGAAAGAA+CGG | 0.629520 | 3_4:-73052349 | Msa0520510:CDS |
ATTGTGAGTAATGATAGTGT+TGG | 0.653355 | 3_4:+73052381 | None:intergenic |
AACTGTGGTTAATCACCAAG+AGG | 0.665729 | 3_4:-73051467 | Msa0520510:CDS |
AGGGTGATGAATGTGGTTTG+GGG | 0.692532 | 3_4:+73052409 | None:intergenic |
TCAGAATCAAGCGTTCACTG+AGG | 0.786263 | 3_4:-73051587 | Msa0520510:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTCATTAAAAATATTTATCA+AGG | + | chr3_4:73052106-73052125 | None:intergenic | 15.0% |
!! | GTCATTAAAAATATTTATCA+AGG | + | chr3_4:73052106-73052125 | None:intergenic | 15.0% |
!!! | ACATTTTTATCAATCATATG+AGG | - | chr3_4:73051619-73051638 | Msa0520510:CDS | 20.0% |
!! | AATATTTATCAAGGATTGAT+AGG | + | chr3_4:73052097-73052116 | None:intergenic | 20.0% |
!!! | ACATTTTTATCAATCATATG+AGG | - | chr3_4:73051619-73051638 | Msa0520510:CDS | 20.0% |
!! | AATATTTATCAAGGATTGAT+AGG | + | chr3_4:73052097-73052116 | None:intergenic | 20.0% |
!! | AAATAGTACATTTGCGTTTT+TGG | + | chr3_4:73051317-73051336 | None:intergenic | 25.0% |
! | TAGATGATACAAGAAAGAAT+GGG | + | chr3_4:73051347-73051366 | None:intergenic | 25.0% |
! | TTCTTGATAAAGGATGTTAT+TGG | + | chr3_4:73051444-73051463 | None:intergenic | 25.0% |
! | GAATTACCAAAAAGATACTT+TGG | + | chr3_4:73051741-73051760 | None:intergenic | 25.0% |
!!! | GGTGTTAGTTTTATAAAGAA+AGG | + | chr3_4:73051874-73051893 | None:intergenic | 25.0% |
! | CAGAACATGTTATATAATGT+GGG | + | chr3_4:73051907-73051926 | None:intergenic | 25.0% |
! | TCAGAACATGTTATATAATG+TGG | + | chr3_4:73051908-73051927 | None:intergenic | 25.0% |
! | ACAAACATACATAATGTGAT+AGG | + | chr3_4:73052181-73052200 | None:intergenic | 25.0% |
! | AGAAAAACAACAACATGAAA+AGG | - | chr3_4:73052251-73052270 | Msa0520510:CDS | 25.0% |
! | TTGATAGAATGGAAAAAGAA+AGG | - | chr3_4:73052511-73052530 | Msa0520510:CDS | 25.0% |
!! | AAATAGTACATTTGCGTTTT+TGG | + | chr3_4:73051317-73051336 | None:intergenic | 25.0% |
! | TAGATGATACAAGAAAGAAT+GGG | + | chr3_4:73051347-73051366 | None:intergenic | 25.0% |
! | TTCTTGATAAAGGATGTTAT+TGG | + | chr3_4:73051444-73051463 | None:intergenic | 25.0% |
! | GAATTACCAAAAAGATACTT+TGG | + | chr3_4:73051741-73051760 | None:intergenic | 25.0% |
!!! | GGTGTTAGTTTTATAAAGAA+AGG | + | chr3_4:73051874-73051893 | None:intergenic | 25.0% |
! | CAGAACATGTTATATAATGT+GGG | + | chr3_4:73051907-73051926 | None:intergenic | 25.0% |
! | TCAGAACATGTTATATAATG+TGG | + | chr3_4:73051908-73051927 | None:intergenic | 25.0% |
! | ACAAACATACATAATGTGAT+AGG | + | chr3_4:73052181-73052200 | None:intergenic | 25.0% |
! | AGAAAAACAACAACATGAAA+AGG | - | chr3_4:73052251-73052270 | Msa0520510:CDS | 25.0% |
! | TTGATAGAATGGAAAAAGAA+AGG | - | chr3_4:73052511-73052530 | Msa0520510:CDS | 25.0% |
CTAGATGATACAAGAAAGAA+TGG | + | chr3_4:73051348-73051367 | None:intergenic | 30.0% | |
TTATTGGCCATTTCATTGTA+AGG | + | chr3_4:73051428-73051447 | None:intergenic | 30.0% | |
TGAGTTTCTGTTCTTGATAA+AGG | + | chr3_4:73051454-73051473 | None:intergenic | 30.0% | |
! | AATGATAGTGTTGGAGAATA+GGG | + | chr3_4:73051541-73051560 | None:intergenic | 30.0% |
! | TAATGATAGTGTTGGAGAAT+AGG | + | chr3_4:73051542-73051561 | None:intergenic | 30.0% |
! | ATTGTGAGTAATGATAGTGT+TGG | + | chr3_4:73051550-73051569 | None:intergenic | 30.0% |
GTGATGGTTGAAATTTATGT+TGG | + | chr3_4:73051649-73051668 | None:intergenic | 30.0% | |
ACAACAACAAACACATTCTT+TGG | - | chr3_4:73051670-73051689 | Msa0520510:CDS | 30.0% | |
CAACAACAAACACATTCTTT+GGG | - | chr3_4:73051671-73051690 | Msa0520510:CDS | 30.0% | |
CAGATTTGTACATTTATTCC+GGG | + | chr3_4:73051946-73051965 | None:intergenic | 30.0% | |
CCAGATTTGTACATTTATTC+CGG | + | chr3_4:73051947-73051966 | None:intergenic | 30.0% | |
TACTACCCATATTGATGTAT+TGG | - | chr3_4:73051999-73052018 | Msa0520510:intron | 30.0% | |
CAAGACCAATACATCAATAT+GGG | + | chr3_4:73052007-73052026 | None:intergenic | 30.0% | |
TTGATAGGCAAATAGATCAT+TGG | + | chr3_4:73052082-73052101 | None:intergenic | 30.0% | |
CACATTATGTATGTTTGTGT+TGG | - | chr3_4:73052183-73052202 | Msa0520510:intron | 30.0% | |
TAAAAGATTGACCAAAACTG+TGG | - | chr3_4:73052446-73052465 | Msa0520510:CDS | 30.0% | |
CTAGATGATACAAGAAAGAA+TGG | + | chr3_4:73051348-73051367 | None:intergenic | 30.0% | |
TTATTGGCCATTTCATTGTA+AGG | + | chr3_4:73051428-73051447 | None:intergenic | 30.0% | |
TGAGTTTCTGTTCTTGATAA+AGG | + | chr3_4:73051454-73051473 | None:intergenic | 30.0% | |
! | AATGATAGTGTTGGAGAATA+GGG | + | chr3_4:73051541-73051560 | None:intergenic | 30.0% |
! | TAATGATAGTGTTGGAGAAT+AGG | + | chr3_4:73051542-73051561 | None:intergenic | 30.0% |
! | ATTGTGAGTAATGATAGTGT+TGG | + | chr3_4:73051550-73051569 | None:intergenic | 30.0% |
GTGATGGTTGAAATTTATGT+TGG | + | chr3_4:73051649-73051668 | None:intergenic | 30.0% | |
ACAACAACAAACACATTCTT+TGG | - | chr3_4:73051670-73051689 | Msa0520510:CDS | 30.0% | |
CAACAACAAACACATTCTTT+GGG | - | chr3_4:73051671-73051690 | Msa0520510:CDS | 30.0% | |
CAGATTTGTACATTTATTCC+GGG | + | chr3_4:73051946-73051965 | None:intergenic | 30.0% | |
CCAGATTTGTACATTTATTC+CGG | + | chr3_4:73051947-73051966 | None:intergenic | 30.0% | |
TACTACCCATATTGATGTAT+TGG | - | chr3_4:73051999-73052018 | Msa0520510:intron | 30.0% | |
CAAGACCAATACATCAATAT+GGG | + | chr3_4:73052007-73052026 | None:intergenic | 30.0% | |
TTGATAGGCAAATAGATCAT+TGG | + | chr3_4:73052082-73052101 | None:intergenic | 30.0% | |
CACATTATGTATGTTTGTGT+TGG | - | chr3_4:73052183-73052202 | Msa0520510:intron | 30.0% | |
TAAAAGATTGACCAAAACTG+TGG | - | chr3_4:73052446-73052465 | Msa0520510:CDS | 30.0% | |
!! | AAATGGACTAATAGCCTGTT+TGG | + | chr3_4:73051279-73051298 | None:intergenic | 35.0% |
AAACAGGCTATTAGTCCATT+TGG | - | chr3_4:73051278-73051297 | Msa0520510:CDS | 35.0% | |
ACACTTAAGATTCAATGCTC+TGG | + | chr3_4:73051395-73051414 | None:intergenic | 35.0% | |
TTGGGGTTAAGATATTTGGA+GGG | + | chr3_4:73051505-73051524 | None:intergenic | 35.0% | |
! | TTTGGGGTTAAGATATTTGG+AGG | + | chr3_4:73051506-73051525 | None:intergenic | 35.0% |
! | TGGTTTGGGGTTAAGATATT+TGG | + | chr3_4:73051509-73051528 | None:intergenic | 35.0% |
ACACACAACAACAGAAAGAA+CGG | - | chr3_4:73051579-73051598 | Msa0520510:CDS | 35.0% | |
!! | TGTGTTTGTTGTTGTTGTGA+TGG | + | chr3_4:73051665-73051684 | None:intergenic | 35.0% |
AATCGTTACATCAAATGCGA+AGG | - | chr3_4:73051707-73051726 | Msa0520510:CDS | 35.0% | |
CCAAAAAGATACTTTGGCAT+TGG | + | chr3_4:73051735-73051754 | None:intergenic | 35.0% | |
!! | CCAATGCCAAAGTATCTTTT+TGG | - | chr3_4:73051732-73051751 | Msa0520510:intron | 35.0% |
TATAATGTGGGTGTATATGC+TGG | + | chr3_4:73051895-73051914 | None:intergenic | 35.0% | |
CCGGAATAAATGTACAAATC+TGG | - | chr3_4:73051944-73051963 | Msa0520510:intron | 35.0% | |
GCAAGACCAATACATCAATA+TGG | + | chr3_4:73052008-73052027 | None:intergenic | 35.0% | |
GCAATTAGTACAGGTGATAT+AGG | - | chr3_4:73052056-73052075 | Msa0520510:intron | 35.0% | |
!! | ATGTTTGTGTTGGCATTTTC+AGG | - | chr3_4:73052193-73052212 | Msa0520510:intron | 35.0% |
GATGCGAAAGAAGAGATTTA+AGG | - | chr3_4:73052395-73052414 | Msa0520510:CDS | 35.0% | |
!! | TTGGTGATTAACCACAGTTT+TGG | + | chr3_4:73052460-73052479 | None:intergenic | 35.0% |
! | ATTTCTTCTGAAGAACCTCT+TGG | + | chr3_4:73052479-73052498 | None:intergenic | 35.0% |
GGTTCTTCAGAAGAAATTGT+TGG | - | chr3_4:73052482-73052501 | Msa0520510:CDS | 35.0% | |
TCTTCAGAAGAAATTGTTGG+AGG | - | chr3_4:73052485-73052504 | Msa0520510:CDS | 35.0% | |
TGGAAAAAGAAAGGATACAG+AGG | - | chr3_4:73052520-73052539 | Msa0520510:exon | 35.0% | |
GGAAAAAGAAAGGATACAGA+GGG | - | chr3_4:73052521-73052540 | Msa0520510:exon | 35.0% | |
! | TCCAGCATTGAGAAAATAAC+TGG | - | chr3_4:73052645-73052664 | Msa0520510:five_prime_UTR | 35.0% |
!! | ACCAGTTATTTTCTCAATGC+TGG | + | chr3_4:73052649-73052668 | None:intergenic | 35.0% |
!! | AAATGGACTAATAGCCTGTT+TGG | + | chr3_4:73051279-73051298 | None:intergenic | 35.0% |
AAACAGGCTATTAGTCCATT+TGG | - | chr3_4:73051278-73051297 | Msa0520510:CDS | 35.0% | |
ACACTTAAGATTCAATGCTC+TGG | + | chr3_4:73051395-73051414 | None:intergenic | 35.0% | |
TTGGGGTTAAGATATTTGGA+GGG | + | chr3_4:73051505-73051524 | None:intergenic | 35.0% | |
! | TTTGGGGTTAAGATATTTGG+AGG | + | chr3_4:73051506-73051525 | None:intergenic | 35.0% |
! | TGGTTTGGGGTTAAGATATT+TGG | + | chr3_4:73051509-73051528 | None:intergenic | 35.0% |
ACACACAACAACAGAAAGAA+CGG | - | chr3_4:73051579-73051598 | Msa0520510:CDS | 35.0% | |
!! | TGTGTTTGTTGTTGTTGTGA+TGG | + | chr3_4:73051665-73051684 | None:intergenic | 35.0% |
AATCGTTACATCAAATGCGA+AGG | - | chr3_4:73051707-73051726 | Msa0520510:CDS | 35.0% | |
CCAAAAAGATACTTTGGCAT+TGG | + | chr3_4:73051735-73051754 | None:intergenic | 35.0% | |
!! | CCAATGCCAAAGTATCTTTT+TGG | - | chr3_4:73051732-73051751 | Msa0520510:intron | 35.0% |
TATAATGTGGGTGTATATGC+TGG | + | chr3_4:73051895-73051914 | None:intergenic | 35.0% | |
CCGGAATAAATGTACAAATC+TGG | - | chr3_4:73051944-73051963 | Msa0520510:intron | 35.0% | |
GCAAGACCAATACATCAATA+TGG | + | chr3_4:73052008-73052027 | None:intergenic | 35.0% | |
GCAATTAGTACAGGTGATAT+AGG | - | chr3_4:73052056-73052075 | Msa0520510:intron | 35.0% | |
!! | ATGTTTGTGTTGGCATTTTC+AGG | - | chr3_4:73052193-73052212 | Msa0520510:intron | 35.0% |
GATGCGAAAGAAGAGATTTA+AGG | - | chr3_4:73052395-73052414 | Msa0520510:CDS | 35.0% | |
!! | TTGGTGATTAACCACAGTTT+TGG | + | chr3_4:73052460-73052479 | None:intergenic | 35.0% |
! | ATTTCTTCTGAAGAACCTCT+TGG | + | chr3_4:73052479-73052498 | None:intergenic | 35.0% |
GGTTCTTCAGAAGAAATTGT+TGG | - | chr3_4:73052482-73052501 | Msa0520510:CDS | 35.0% | |
TCTTCAGAAGAAATTGTTGG+AGG | - | chr3_4:73052485-73052504 | Msa0520510:CDS | 35.0% | |
TGGAAAAAGAAAGGATACAG+AGG | - | chr3_4:73052520-73052539 | Msa0520510:exon | 35.0% | |
GGAAAAAGAAAGGATACAGA+GGG | - | chr3_4:73052521-73052540 | Msa0520510:exon | 35.0% | |
! | TCCAGCATTGAGAAAATAAC+TGG | - | chr3_4:73052645-73052664 | Msa0520510:five_prime_UTR | 35.0% |
!! | ACCAGTTATTTTCTCAATGC+TGG | + | chr3_4:73052649-73052668 | None:intergenic | 35.0% |
!! | TAATAGCCTGTTTGGTTTGG+CGG | + | chr3_4:73051271-73051290 | None:intergenic | 40.0% |
GACTAATAGCCTGTTTGGTT+TGG | + | chr3_4:73051274-73051293 | None:intergenic | 40.0% | |
GGAAGACTGAAAGAACCAAA+TGG | + | chr3_4:73051296-73051315 | None:intergenic | 40.0% | |
GATGCAGCCTTACAATGAAA+TGG | - | chr3_4:73051418-73051437 | Msa0520510:CDS | 40.0% | |
GAGAATGGAACCATCATCTA+GGG | + | chr3_4:73051477-73051496 | None:intergenic | 40.0% | |
TGAGAATGGAACCATCATCT+AGG | + | chr3_4:73051478-73051497 | None:intergenic | 40.0% | |
ATTTGGAGGGTTGTTGAGAA+TGG | + | chr3_4:73051492-73051511 | None:intergenic | 40.0% | |
TAGGGTGATGAATGTGGTTT+GGG | + | chr3_4:73051523-73051542 | None:intergenic | 40.0% | |
ATAGGGTGATGAATGTGGTT+TGG | + | chr3_4:73051524-73051543 | None:intergenic | 40.0% | |
TTTATTCCGGGCTCATTGTA+CGG | + | chr3_4:73051934-73051953 | None:intergenic | 40.0% | |
! | GTACAAATCTGGTTAGCTCA+TGG | - | chr3_4:73051955-73051974 | Msa0520510:intron | 40.0% |
TTCGCTTTCGCAATTAGTAC+AGG | - | chr3_4:73052047-73052066 | Msa0520510:intron | 40.0% | |
!! | CAGGAAAGCATTCAACAACA+CGG | - | chr3_4:73052212-73052231 | Msa0520510:CDS | 40.0% |
GGAAAACAACGAGAGATGTT+TGG | - | chr3_4:73052272-73052291 | Msa0520510:CDS | 40.0% | |
TTGGTTTCCGACAACAACTT+TGG | - | chr3_4:73052291-73052310 | Msa0520510:CDS | 40.0% | |
AAGCTCACCAAAGTTGTTGT+CGG | + | chr3_4:73052301-73052320 | None:intergenic | 40.0% | |
CTTGAAGCTGTGTACAAACT+TGG | - | chr3_4:73052318-73052337 | Msa0520510:CDS | 40.0% | |
AGGAACATGATTCGAAGAGA+AGG | - | chr3_4:73052361-73052380 | Msa0520510:CDS | 40.0% | |
GGAACATGATTCGAAGAGAA+GGG | - | chr3_4:73052362-73052381 | Msa0520510:CDS | 40.0% | |
AACTGTGGTTAATCACCAAG+AGG | - | chr3_4:73052461-73052480 | Msa0520510:CDS | 40.0% | |
GTTGGAGGTGATTGATAGAA+TGG | - | chr3_4:73052500-73052519 | Msa0520510:CDS | 40.0% | |
GGATACAGAGGGAAGAAAAT+TGG | - | chr3_4:73052532-73052551 | Msa0520510:five_prime_UTR | 40.0% | |
TACAGAGGGAAGAAAATTGG+AGG | - | chr3_4:73052535-73052554 | Msa0520510:five_prime_UTR | 40.0% | |
! | GTGAGCGTGATTTTGCTAAA+CGG | - | chr3_4:73052604-73052623 | Msa0520510:five_prime_UTR | 40.0% |
!! | TAATAGCCTGTTTGGTTTGG+CGG | + | chr3_4:73051271-73051290 | None:intergenic | 40.0% |
GACTAATAGCCTGTTTGGTT+TGG | + | chr3_4:73051274-73051293 | None:intergenic | 40.0% | |
GGAAGACTGAAAGAACCAAA+TGG | + | chr3_4:73051296-73051315 | None:intergenic | 40.0% | |
GATGCAGCCTTACAATGAAA+TGG | - | chr3_4:73051418-73051437 | Msa0520510:CDS | 40.0% | |
GAGAATGGAACCATCATCTA+GGG | + | chr3_4:73051477-73051496 | None:intergenic | 40.0% | |
TGAGAATGGAACCATCATCT+AGG | + | chr3_4:73051478-73051497 | None:intergenic | 40.0% | |
ATTTGGAGGGTTGTTGAGAA+TGG | + | chr3_4:73051492-73051511 | None:intergenic | 40.0% | |
TAGGGTGATGAATGTGGTTT+GGG | + | chr3_4:73051523-73051542 | None:intergenic | 40.0% | |
ATAGGGTGATGAATGTGGTT+TGG | + | chr3_4:73051524-73051543 | None:intergenic | 40.0% | |
TTTATTCCGGGCTCATTGTA+CGG | + | chr3_4:73051934-73051953 | None:intergenic | 40.0% | |
! | GTACAAATCTGGTTAGCTCA+TGG | - | chr3_4:73051955-73051974 | Msa0520510:intron | 40.0% |
TTCGCTTTCGCAATTAGTAC+AGG | - | chr3_4:73052047-73052066 | Msa0520510:intron | 40.0% | |
!! | CAGGAAAGCATTCAACAACA+CGG | - | chr3_4:73052212-73052231 | Msa0520510:CDS | 40.0% |
GGAAAACAACGAGAGATGTT+TGG | - | chr3_4:73052272-73052291 | Msa0520510:CDS | 40.0% | |
TTGGTTTCCGACAACAACTT+TGG | - | chr3_4:73052291-73052310 | Msa0520510:CDS | 40.0% | |
AAGCTCACCAAAGTTGTTGT+CGG | + | chr3_4:73052301-73052320 | None:intergenic | 40.0% | |
CTTGAAGCTGTGTACAAACT+TGG | - | chr3_4:73052318-73052337 | Msa0520510:CDS | 40.0% | |
AGGAACATGATTCGAAGAGA+AGG | - | chr3_4:73052361-73052380 | Msa0520510:CDS | 40.0% | |
GGAACATGATTCGAAGAGAA+GGG | - | chr3_4:73052362-73052381 | Msa0520510:CDS | 40.0% | |
AACTGTGGTTAATCACCAAG+AGG | - | chr3_4:73052461-73052480 | Msa0520510:CDS | 40.0% | |
GTTGGAGGTGATTGATAGAA+TGG | - | chr3_4:73052500-73052519 | Msa0520510:CDS | 40.0% | |
GGATACAGAGGGAAGAAAAT+TGG | - | chr3_4:73052532-73052551 | Msa0520510:five_prime_UTR | 40.0% | |
TACAGAGGGAAGAAAATTGG+AGG | - | chr3_4:73052535-73052554 | Msa0520510:five_prime_UTR | 40.0% | |
! | GTGAGCGTGATTTTGCTAAA+CGG | - | chr3_4:73052604-73052623 | Msa0520510:five_prime_UTR | 40.0% |
CAGAAACTCACCCTAGATGA+TGG | - | chr3_4:73051464-73051483 | Msa0520510:CDS | 45.0% | |
AGGGTGATGAATGTGGTTTG+GGG | + | chr3_4:73051522-73051541 | None:intergenic | 45.0% | |
GGAGAATAGGGTGATGAATG+TGG | + | chr3_4:73051529-73051548 | None:intergenic | 45.0% | |
TGATAACCGTACAATGAGCC+CGG | - | chr3_4:73051925-73051944 | Msa0520510:intron | 45.0% | |
TCAGAATCAAGCGTTCACTG+AGG | - | chr3_4:73052341-73052360 | Msa0520510:CDS | 45.0% | |
ATGATTCGAAGAGAAGGGCT+AGG | - | chr3_4:73052367-73052386 | Msa0520510:CDS | 45.0% | |
CAGAAACTCACCCTAGATGA+TGG | - | chr3_4:73051464-73051483 | Msa0520510:CDS | 45.0% | |
AGGGTGATGAATGTGGTTTG+GGG | + | chr3_4:73051522-73051541 | None:intergenic | 45.0% | |
GGAGAATAGGGTGATGAATG+TGG | + | chr3_4:73051529-73051548 | None:intergenic | 45.0% | |
TGATAACCGTACAATGAGCC+CGG | - | chr3_4:73051925-73051944 | Msa0520510:intron | 45.0% | |
TCAGAATCAAGCGTTCACTG+AGG | - | chr3_4:73052341-73052360 | Msa0520510:CDS | 45.0% | |
ATGATTCGAAGAGAAGGGCT+AGG | - | chr3_4:73052367-73052386 | Msa0520510:CDS | 45.0% | |
!! | AGCCTGTTTGGTTTGGCGGT+GGG | + | chr3_4:73051267-73051286 | None:intergenic | 55.0% |
!! | TAGCCTGTTTGGTTTGGCGG+TGG | + | chr3_4:73051268-73051287 | None:intergenic | 55.0% |
!! | AGCCTGTTTGGTTTGGCGGT+GGG | + | chr3_4:73051267-73051286 | None:intergenic | 55.0% |
!! | TAGCCTGTTTGGTTTGGCGG+TGG | + | chr3_4:73051268-73051287 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 73051264 | 73052686 | 73051264 | ID=Msa0520510;Name=Msa0520510 |
chr3_4 | mRNA | 73051264 | 73052686 | 73051264 | ID=Msa0520510-mRNA-1;Parent=Msa0520510;Name=Msa0520510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=155|1|0.5|1|1|1|2|0|268 |
chr3_4 | exon | 73051264 | 73051735 | 73051264 | ID=Msa0520510-mRNA-1:exon:20329;Parent=Msa0520510-mRNA-1 |
chr3_4 | exon | 73052197 | 73052686 | 73052197 | ID=Msa0520510-mRNA-1:exon:20328;Parent=Msa0520510-mRNA-1 |
chr3_4 | five_prime_UTR | 73052532 | 73052686 | 73052532 | ID=Msa0520510-mRNA-1:five_prime_utr;Parent=Msa0520510-mRNA-1 |
chr3_4 | CDS | 73052197 | 73052531 | 73052197 | ID=Msa0520510-mRNA-1:cds;Parent=Msa0520510-mRNA-1 |
chr3_4 | CDS | 73051264 | 73051735 | 73051264 | ID=Msa0520510-mRNA-1:cds;Parent=Msa0520510-mRNA-1 |
Gene Sequence |
Protein sequence |