AlfalfaGEDB | Msa0432180

M. sativa cultivar zhongmu-4 / Msa0432180

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432180	XP_003603312.1	97.970	542	8	1	1	539	1	542	0.0	1097

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432180	sp\|Q6K8X6\|ORR23_ORYSJ	60.267	375	125	9	6	360	18	388	1.16e-137	417

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432180	G7J9W3	97.970	542	8	1	1	539	1	542	0.0	1097

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TFs/TRs:

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Gene ID	Type	Classification
Msa0432180	TF	GARP-ARR-B

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0432180	Msa0476700	0.873633	1.263758e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432180	MtrunA17_Chr3g0137101	97.970	542	8	1	1	539	1	542	0.0	1097
Msa0432180	MtrunA17_Chr1g0149841	53.783	489	165	12	6	480	3	444	3.12e-150	440
Msa0432180	MtrunA17_Chr2g0304841	46.507	501	220	10	6	480	16	494	1.36e-127	388
Msa0432180	MtrunA17_Chr1g0149851	52.144	443	154	14	6	410	3	425	3.86e-125	377
Msa0432180	MtrunA17_Chr7g0275891	56.497	354	106	7	5	335	2	330	4.65e-115	344
Msa0432180	MtrunA17_Chr2g0294911	48.767	365	137	8	6	354	27	357	2.20e-101	318
Msa0432180	MtrunA17_Chr4g0067981	57.934	271	85	3	3	260	26	280	1.30e-99	315
Msa0432180	MtrunA17_Chr4g0074411	41.532	496	261	10	2	486	12	489	1.09e-98	311
Msa0432180	MtrunA17_Chr1g0161431	55.369	298	108	5	4	283	7	297	3.22e-98	310
Msa0432180	MtrunA17_Chr7g0275401	53.722	309	114	5	6	312	3	284	9.39e-97	295

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432180	AT2G25180.1	52.425	433	158	11	6	416	11	417	2.23e-130	393
Msa0432180	AT4G31920.1	54.645	366	105	10	6	352	11	334	2.37e-111	342
Msa0432180	AT3G16857.1	55.755	278	100	5	6	263	31	305	2.66e-95	304
Msa0432180	AT3G16857.2	55.755	278	100	5	6	263	31	305	7.43e-95	303
Msa0432180	AT5G58080.1	49.444	360	152	8	2	346	8	352	4.05e-93	297
Msa0432180	AT2G01760.1	56.154	260	108	3	6	259	5	264	7.66e-87	273
Msa0432180	AT1G67710.1	58.233	249	96	4	9	253	8	252	3.15e-83	268
Msa0432180	AT2G01760.2	50.694	288	108	4	6	259	5	292	9.31e-81	258
Msa0432180	AT3G16857.3	55.274	237	83	5	47	263	2	235	1.48e-75	251
Msa0432180	AT2G01760.3	54.271	199	85	3	67	259	1	199	9.21e-57	192

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Find 185 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGACAAGTTTGACC+TGG	0.671629	3_2:-84341292	Msa0432180:CDS
AAACACGGAGGTATAGGAAT+AGG	0.439930	3_2:-84339694	Msa0432180:CDS
AAACCAACAAGCTAGTATGG+TGG	0.708833	3_2:-84340175	Msa0432180:CDS
AAAGAAGCCATGTTATCTGA+AGG	0.609057	3_2:+84339505	None:intergenic
AAAGATTAAACGTGCCTGAA+GGG	0.564313	3_2:-84338063	Msa0432180:three_prime_UTR
AAAGCTGACTAAGAAAAGAA+AGG	0.566687	3_2:-84340815	Msa0432180:CDS
AAATAGCATGTGTCCATGAG+AGG	0.605548	3_2:+84338365	None:intergenic
AAATATCACAAGGGAGAACG+TGG	0.641409	3_2:-84340335	Msa0432180:CDS
AAATTACCGTTTATATACTC+AGG	0.541639	3_2:+84339409	None:intergenic
AACACTCCAACTAGTCTTAA+CGG	0.404206	3_2:-84340045	Msa0432180:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGAAAAGAGTCATGATTT+AGG	-	chr3_2:84338540-84338559	Msa0432180:intron	30.0%
AAGTCAACACACTATGAATT+TGG	+	chr3_2:84338576-84338595	None:intergenic	30.0%
ACTTAATTATGTGCTTGCTT+GGG	-	chr3_2:84338736-84338755	Msa0432180:intron	30.0%
TTGACTATAACCAAGTGATT+GGG	+	chr3_2:84339101-84339120	None:intergenic	30.0%
GCAGAAAATTCAGATGAAAA+TGG	-	chr3_2:84339811-84339830	Msa0432180:CDS	30.0%
AAAGCTGACTAAGAAAAGAA+AGG	-	chr3_2:84339834-84339853	Msa0432180:CDS	30.0%
ATAAAATTCAGTAAAGCTCG+AGG	+	chr3_2:84340054-84340073	None:intergenic	30.0%
TGAATGTCGAAAATATCACA+AGG	-	chr3_2:84340304-84340323	Msa0432180:intron	30.0%
GAATGTCGAAAATATCACAA+GGG	-	chr3_2:84340305-84340324	Msa0432180:intron	30.0%
GAAACATTCAGTGAAAGAAA+TGG	+	chr3_2:84340395-84340414	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	84338006	84342665	84338006	ID=Msa0432180;Name=Msa0432180
chr3_2	mRNA	84338006	84342665	84338006	ID=Msa0432180-mRNA-1;Parent=Msa0432180;Name=Msa0432180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=137\|0.83\|0.71\|1\|0.83\|0.57\|7\|758\|539
chr3_2	exon	84338006	84338526	84338006	ID=Msa0432180-mRNA-1:exon:23847;Parent=Msa0432180-mRNA-1
chr3_2	exon	84339111	84340235	84339111	ID=Msa0432180-mRNA-1:exon:23846;Parent=Msa0432180-mRNA-1
chr3_2	exon	84340321	84340397	84340321	ID=Msa0432180-mRNA-1:exon:23845;Parent=Msa0432180-mRNA-1
chr3_2	exon	84340674	84340904	84340674	ID=Msa0432180-mRNA-1:exon:23844;Parent=Msa0432180-mRNA-1
chr3_2	exon	84340914	84341072	84340914	ID=Msa0432180-mRNA-1:exon:23843;Parent=Msa0432180-mRNA-1
chr3_2	exon	84341208	84341360	84341208	ID=Msa0432180-mRNA-1:exon:23842;Parent=Msa0432180-mRNA-1
chr3_2	exon	84342417	84342665	84342417	ID=Msa0432180-mRNA-1:exon:23841;Parent=Msa0432180-mRNA-1
chr3_2	five_prime_UTR	84342529	84342665	84342529	ID=Msa0432180-mRNA-1:five_prime_utr;Parent=Msa0432180-mRNA-1
chr3_2	CDS	84342417	84342528	84342417	ID=Msa0432180-mRNA-1:cds;Parent=Msa0432180-mRNA-1
chr3_2	CDS	84341208	84341360	84341208	ID=Msa0432180-mRNA-1:cds;Parent=Msa0432180-mRNA-1
chr3_2	CDS	84340914	84341072	84340914	ID=Msa0432180-mRNA-1:cds;Parent=Msa0432180-mRNA-1
chr3_2	CDS	84340674	84340904	84340674	ID=Msa0432180-mRNA-1:cds;Parent=Msa0432180-mRNA-1
chr3_2	CDS	84340321	84340397	84340321	ID=Msa0432180-mRNA-1:cds;Parent=Msa0432180-mRNA-1
chr3_2	CDS	84339348	84340235	84339348	ID=Msa0432180-mRNA-1:cds;Parent=Msa0432180-mRNA-1
chr3_2	three_prime_UTR	84339111	84339347	84339111	ID=Msa0432180-mRNA-1:three_prime_utr;Parent=Msa0432180-mRNA-1
chr3_2	three_prime_UTR	84338006	84338526	84338006	ID=Msa0432180-mRNA-1:three_prime_utr;Parent=Msa0432180-mRNA-1

Gene Sequence

>Msa0432180

ATGGATGATTCCGGTGACCGTTTTCCCATCGGAATGCGTGTTCTCGCCGTTGACGACGATCCAACTTGTCTCATGGTTTTGGAAACTCTTCTCCGTAGATGTCAATACCACGTAACCACAACTAGTCAAGCAATAACAGCGTTGACCATGTTGAGAGAAAACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCTGACATGGATGGATTTAAGCTGCTTGAACTTGTGGGACTTGAAATGGACCTTCCCGTCATAATGTTGTCTGCATATGGTGATACAAAGCTGGTGATGAAAGGAATTTCCCATGGTGCCTGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGCTAAAGAACATTTGGCAGCATGTAATTAGGAAGAAGAAGTCTGATCCAAAGGAGAAAAACAAAACCAACAAAACTACTTCTGATAGTGGCAGTGGACTAAGATCCGCAGGAGCAGAAAATTCAGATGAAAATGGAAAGCTGACTAAGAAAAGAAAGGATCAGGATGAAGACGAAGATGAGGATAAAGAGAATGGTAATGACAACGAGGACCCATCAGCTCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTGCCCAAAAAAATTCTTGATATGATGAATGTCGAAAATATCACAAGGGAGAACGTGGCAAGCCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTTGCAAACCAACAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCAGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAATAATGCTTTCAGATCCTTTTCACCTAGTGGGATAATTGGTAATCTGAACACTCCAACTAGTCTTAACGGGCATGGATTTTCTCCTTCGGGGCTTCTTCAGTTGGGCCAATCACGTAATTTAAACAATTCTTCCAATGATCAACTTAAATTCCAGTCAGCCATAACTCCCGTTAATCAGAATATTCTTCAGGGAATGCCAATGTCCATAGGGTTTGATCACTTGCAAAACAGCAAGGGTGTTATCTCTGTTCAAAACCTGAATACTGATGTGAAAACAACTTTTCCCATCCCAAATAAATTCCCGGATCAACGGCCAAGTTTTGCCACCTCTAGTTCTCATCCCCCAAGTCTCGGTATCTCAAACAATGGCTTGATGTCGGATACGCACCCTGAAAGAAAACACGGAGGTATAGGAATAGGATATGGAAGTTCATCTTCTTCAGTAGCCTCTCAACATTCAGAATTTTCTTTCTCTATGCTGGATCAAGGTAGGCACGGTGATAATTGGTCAAGCGACGTGCCGTTATCTGGAATCCAAACAAATTCTTTCTCTTCAAGTGAATGTTTTAGACAGACAGCTGTTCCTCCTTCAGATAACATGGCTTCTTTGCCCTTGCAAGCGGGGTATCCTGGTGGTTCGTTGCCAGATATGCACTCCCAAGGAATGATTTTTACTAATTCACCTGAGTATATAAACGGTAATTTGCCATTTCAAGGATGGGAAGACCGTAATCAGGATGCTACTTACCACTCAAATGTTACTTGA

Protein sequence

>Msa0432180

MDDSGDRFPIGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAITALTMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDPKEKNKTNKTTSDSGSGLRSAGAENSDENGKLTKKRKDQDEDEDEDKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHNNAFRSFSPSGIIGNLNTPTSLNGHGFSPSGLLQLGQSRNLNNSSNDQLKFQSAITPVNQNILQGMPMSIGFDHLQNSKGVISVQNLNTDVKTTFPIPNKFPDQRPSFATSSSHPPSLGISNNGLMSDTHPERKHGGIGIGYGSSSSSVASQHSEFSFSMLDQGRHGDNWSSDVPLSGIQTNSFSSSECFRQTAVPPSDNMASLPLQAGYPGGSLPDMHSQGMIFTNSPEYINGNLPFQGWEDRNQDATYHSNVT*