AlfalfaGEDB | Msa0476700

M. sativa cultivar zhongmu-4 / Msa0476700

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476700	XP_003603312.1	98.450	645	10	0	1	645	1	645	0.0	1317

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476700	sp\|Q6K8X6\|ORR23_ORYSJ	60.267	375	128	9	6	363	18	388	1.52e-137	421

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476700	G7J9W3	98.450	645	10	0	1	645	1	645	0.0	1317

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TFs/TRs:

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Gene ID	Type	Classification
Msa0476700	TF	GARP-ARR-B

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0162480	Msa0476700	0.806282	8.873152e-50	-8.615850e-47
Msa0242820	Msa0476700	0.815754	7.862976e-52	-8.615850e-47
Msa0287640	Msa0476700	0.811112	8.239535e-51	-8.615850e-47
Msa0287660	Msa0476700	0.820985	5.133884e-53	-8.615850e-47
Msa0382350	Msa0476700	0.804864	1.760472e-49	-8.615850e-47
Msa0432180	Msa0476700	0.873633	1.263758e-67	-8.615850e-47
Msa0447440	Msa0476700	0.814026	1.900020e-51	-8.615850e-47
Msa0476700	Msa0619010	0.809677	1.681408e-50	-8.615850e-47
Msa0476700	Msa0627580	0.834638	2.669776e-56	-8.615850e-47
Msa0476700	Msa0705570	0.809308	2.017272e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476700	MtrunA17_Chr3g0137101	98.450	645	10	0	1	645	1	645	0.0	1317
Msa0476700	MtrunA17_Chr1g0149841	48.217	589	194	17	6	577	3	497	1.51e-150	444
Msa0476700	MtrunA17_Chr2g0304841	39.628	699	331	17	6	642	16	685	8.39e-135	410
Msa0476700	MtrunA17_Chr1g0149851	52.691	446	150	14	6	413	3	425	1.71e-125	382
Msa0476700	MtrunA17_Chr1g0149851	32.836	201	82	11	434	620	365	526	3.17e-11	66.2
Msa0476700	MtrunA17_Chr7g0275891	56.863	357	103	7	5	338	2	330	5.74e-115	348
Msa0476700	MtrunA17_Chr2g0294911	48.747	359	149	7	6	357	27	357	4.57e-100	318
Msa0476700	MtrunA17_Chr4g0067981	57.934	271	82	3	6	263	29	280	2.73e-98	315
Msa0476700	MtrunA17_Chr1g0161431	55.290	293	119	3	4	286	7	297	8.12e-98	312
Msa0476700	MtrunA17_Chr7g0275401	54.167	312	111	5	6	315	3	284	1.06e-96	298

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0476700	AT2G25180.1	52.752	436	155	13	6	419	11	417	5.20e-128	390
Msa0476700	AT4G31920.1	53.117	369	109	9	6	355	11	334	2.88e-109	340
Msa0476700	AT3G16857.1	55.674	282	93	5	8	266	33	305	9.87e-95	306
Msa0476700	AT3G16857.2	55.674	282	93	5	8	266	33	305	2.56e-94	305
Msa0476700	AT5G58080.1	49.319	367	145	9	2	349	8	352	4.01e-92	298
Msa0476700	AT2G01760.1	56.538	260	110	3	6	262	5	264	3.69e-86	275
Msa0476700	AT1G67710.1	57.769	251	97	4	9	256	8	252	7.17e-82	268
Msa0476700	AT2G01760.2	51.042	288	110	4	6	262	5	292	6.28e-80	259
Msa0476700	AT3G16857.3	54.733	243	78	5	47	266	2	235	2.77e-75	253
Msa0476700	AT2G01760.3	54.774	199	87	3	67	262	1	199	2.21e-56	194

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Find 186 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGACAAGTTTGACC+TGG	0.671629	3_3:-80564674	Msa0476700:CDS
AAACACGGAGGTATAGGAAT+AGG	0.439930	3_3:-80563076	Msa0476700:CDS
AAACCAACAAGCTAGTATGG+TGG	0.708833	3_3:-80563557	Msa0476700:CDS
AAAGAAGCCATGTTATCTGA+AGG	0.609057	3_3:+80562887	None:intergenic
AAAGATTAAACGTGCCTGAA+GGG	0.564313	3_3:-80561445	Msa0476700:three_prime_UTR
AAAGCTGACTAAGAAAAGAA+AGG	0.566687	3_3:-80564197	Msa0476700:CDS
AAATAGCATGTGTCCATGAG+AGG	0.605548	3_3:+80561747	None:intergenic
AAATATCACAAGGGAGAACG+TGG	0.641409	3_3:-80563717	Msa0476700:CDS
AAATTACCGTTTATATACTC+AGG	0.541639	3_3:+80562791	None:intergenic
AACACTCCAACTAGTCTTAA+CGG	0.404206	3_3:-80563427	Msa0476700:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGAAAAGAGTCATGATTT+AGG	-	chr3_3:80561924-80561943	Msa0476700:intron	30.0%
AAGTCAACACACTATGAATT+TGG	+	chr3_3:80561960-80561979	None:intergenic	30.0%
ACTTAATTATGTGCTTGCTT+GGG	-	chr3_3:80562120-80562139	Msa0476700:intron	30.0%
TTGACTATAACCAAGTGATT+GGG	+	chr3_3:80562485-80562504	None:intergenic	30.0%
GCAGAAAATTCAGATGAAAA+TGG	-	chr3_3:80563195-80563214	Msa0476700:CDS	30.0%
AAAGCTGACTAAGAAAAGAA+AGG	-	chr3_3:80563218-80563237	Msa0476700:CDS	30.0%
ATAAAATTCAGTAAAGCTCG+AGG	+	chr3_3:80563438-80563457	None:intergenic	30.0%
TGAATGTCGAAAATATCACA+AGG	-	chr3_3:80563688-80563707	Msa0476700:intron	30.0%
GAATGTCGAAAATATCACAA+GGG	-	chr3_3:80563689-80563708	Msa0476700:intron	30.0%
GAAACATTCAGTGAAAGAAA+TGG	+	chr3_3:80563779-80563798	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	80561388	80566049	80561388	ID=Msa0476700;Name=Msa0476700
chr3_3	mRNA	80561388	80566049	80561388	ID=Msa0476700-mRNA-1;Parent=Msa0476700;Name=Msa0476700-mRNA-1;_AED=0.05;_eAED=0.05;_QI=139\|1\|1\|1\|1\|1\|6\|449\|645
chr3_3	exon	80561388	80561908	80561388	ID=Msa0476700-mRNA-1:exon:22106;Parent=Msa0476700-mRNA-1
chr3_3	exon	80562493	80563617	80562493	ID=Msa0476700-mRNA-1:exon:22105;Parent=Msa0476700-mRNA-1
chr3_3	exon	80563703	80563779	80563703	ID=Msa0476700-mRNA-1:exon:22104;Parent=Msa0476700-mRNA-1
chr3_3	exon	80564056	80564454	80564056	ID=Msa0476700-mRNA-1:exon:22103;Parent=Msa0476700-mRNA-1
chr3_3	exon	80564590	80564742	80564590	ID=Msa0476700-mRNA-1:exon:22102;Parent=Msa0476700-mRNA-1
chr3_3	exon	80565799	80566049	80565799	ID=Msa0476700-mRNA-1:exon:22101;Parent=Msa0476700-mRNA-1
chr3_3	five_prime_UTR	80565911	80566049	80565911	ID=Msa0476700-mRNA-1:five_prime_utr;Parent=Msa0476700-mRNA-1
chr3_3	CDS	80565799	80565910	80565799	ID=Msa0476700-mRNA-1:cds;Parent=Msa0476700-mRNA-1
chr3_3	CDS	80564590	80564742	80564590	ID=Msa0476700-mRNA-1:cds;Parent=Msa0476700-mRNA-1
chr3_3	CDS	80564056	80564454	80564056	ID=Msa0476700-mRNA-1:cds;Parent=Msa0476700-mRNA-1
chr3_3	CDS	80563703	80563779	80563703	ID=Msa0476700-mRNA-1:cds;Parent=Msa0476700-mRNA-1
chr3_3	CDS	80562493	80563617	80562493	ID=Msa0476700-mRNA-1:cds;Parent=Msa0476700-mRNA-1
chr3_3	CDS	80561837	80561908	80561837	ID=Msa0476700-mRNA-1:cds;Parent=Msa0476700-mRNA-1
chr3_3	three_prime_UTR	80561388	80561836	80561388	ID=Msa0476700-mRNA-1:three_prime_utr;Parent=Msa0476700-mRNA-1

Gene Sequence

>Msa0476700

ATGGATGATTCCGGTGACCGTTTTCCCATCGGAATGCGTGTTCTCGCCGTTGACGACGATCCAACTTGTCTCATGGTTTTGGAAACTCTTCTCCGTAGATGTCAATACCACGTAACCACAACTAGTCAAGCAATAACAGCGTTGACCATGTTGAGAGAAAACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCTGACATGGATGGATTTAAGCTGCTTGAACTTGTGGGACTTGAAATGGACCTTCCCGTCATAATGTTGTCTGCATATGGTGATACAAAGCTGGTGATGAAAGGAATTTCCCATGGTGCCTGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGCTAAAGAACATTTGGCAGCATGTAATTAGGAAGAAGAAGTCTGATCCAAAGGAGAAAAACAAAACCAGTAAACCAGACAAAACTACTTCTGATAGTGGCAGTGGACTAAGATCCGCAGGAGCAGAAAATTCAGATGAAAATGGAAAGCTGACTAAGAAAAGAAAGGATCAGGATGAAGACGAAGATGAGGATAAAGAGAATGGTAATGACAACGAGGACCCATCAGCTCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTGCCCAAAAAAATTCTTGATATGATGAATGTCGAAAATATCACAAGGGAGAACGTGGCAAGCCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTTGCAAACCAACAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCAGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAATAATGCTTTCAGATCCTTTTCACCTAGTGGGATAATTGGTAATCTGAACACTCCAACTAGTCTTAACGGGCATGGATTTTCTCCTTCGGGGCTTCTTCAGTTGGGCCAATCACGTAATTTAAACAATTCTTCCAATGATCAACTTAAATTCCAGTCAGCCATAACTCCCGTTAATCAGAATATTCTTCAGGGAATGCCAATGTCCATAGGGTTTGATCACTTGCAAAACAGCAAGGGTGTTATCTCTGTTCAAAACCTGAATACTGATGTGAAAACAACTTTTCCCATCCCAAATAAATTCCCGGATCAACGGCCAAGTTTTGCCACCTCTAGTTCTCATCCTCCAAGTCTCGGTATCTCAAACAATGGCTTGATGTCGGATACGCACCCTGAAAGAAAACACGGAGGTATAGGAATAGGATATGGAAGTTCATCTTCTTCAGTAGCCTCTCAACATTCAGAATTTTCTTTCTCTATGCTGGATCAAGGTAGGCACGGTGATAATTGGTCAAGCGACGTGCCGTTATCTGGAATCCAAACAAATTCTTTCTCTTCAAGTGAATGTTTTAGACAGACAGCTGTTCCTCCTTCAGATAACATGGCTTCTTTGCCCTTGCAAGCGGGGTATCCTGGTGGTTCGTTGCCAGATATGCACTCCCAAGGAATGATTTTTACTAATTCACCTGAGTATATAAACGGTAATTTGCCATTTCAAGGATGGGAAGACCGTAATCAGGATGCTACTTACCACTCAAATGTTACTTGTGGATCAATGAACTCTCTTGCTCCAGTTAACGGTGCCGTTTTTCCACCAGGCCAGACAACAACTAGCTCCACCTTGGATACTAAATTTTTTAATCCCATACAAATGAAGCATGCTGGATTTGCCGAGTTAACTGAATGCAGCTCATCAAGACAATCTCCAGCTAATATCATAAGCCAGCAGAAGTTTTCTAATAATCTTGGTTCACTGGAATACTTGGCGAGTTCAATGATGGGACAGGAGCAAGATAAGATGAAATTATTGGGTGGAGACTTCATATGCGATAATTACTCCGACGGGGTATCTTTGTGA

Protein sequence

>Msa0476700

MDDSGDRFPIGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAITALTMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDPKEKNKTSKPDKTTSDSGSGLRSAGAENSDENGKLTKKRKDQDEDEDEDKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHNNAFRSFSPSGIIGNLNTPTSLNGHGFSPSGLLQLGQSRNLNNSSNDQLKFQSAITPVNQNILQGMPMSIGFDHLQNSKGVISVQNLNTDVKTTFPIPNKFPDQRPSFATSSSHPPSLGISNNGLMSDTHPERKHGGIGIGYGSSSSSVASQHSEFSFSMLDQGRHGDNWSSDVPLSGIQTNSFSSSECFRQTAVPPSDNMASLPLQAGYPGGSLPDMHSQGMIFTNSPEYINGNLPFQGWEDRNQDATYHSNVTCGSMNSLAPVNGAVFPPGQTTTSSTLDTKFFNPIQMKHAGFAELTECSSSRQSPANIISQQKFSNNLGSLEYLASSMMGQEQDKMKLLGGDFICDNYSDGVSL*