AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476700 MtrunA17_Chr3g0137101 98.450 645 10 0 1 645 1 645 0.0 1317
Msa0476700 MtrunA17_Chr1g0149841 48.217 589 194 17 6 577 3 497 1.51e-150 444
Msa0476700 MtrunA17_Chr2g0304841 39.628 699 331 17 6 642 16 685 8.39e-135 410
Msa0476700 MtrunA17_Chr1g0149851 52.691 446 150 14 6 413 3 425 1.71e-125 382
Msa0476700 MtrunA17_Chr1g0149851 32.836 201 82 11 434 620 365 526 3.17e-11 66.2
Msa0476700 MtrunA17_Chr7g0275891 56.863 357 103 7 5 338 2 330 5.74e-115 348
Msa0476700 MtrunA17_Chr2g0294911 48.747 359 149 7 6 357 27 357 4.57e-100 318
Msa0476700 MtrunA17_Chr4g0067981 57.934 271 82 3 6 263 29 280 2.73e-98 315
Msa0476700 MtrunA17_Chr1g0161431 55.290 293 119 3 4 286 7 297 8.12e-98 312
Msa0476700 MtrunA17_Chr7g0275401 54.167 312 111 5 6 315 3 284 1.06e-96 298
Msa0476700 MtrunA17_Chr4g0074411 41.483 499 260 11 2 489 12 489 1.12e-96 309
Msa0476700 MtrunA17_Chr4g0074401 51.064 329 145 4 8 328 17 337 1.79e-92 298
Msa0476700 MtrunA17_Chr3g0123131 53.289 304 115 5 8 310 13 290 3.24e-91 293
Msa0476700 MtrunA17_Chr8g0376881 56.343 268 95 4 6 265 23 276 5.87e-89 286
Msa0476700 MtrunA17_Chr3g0134461 59.677 248 43 3 1 247 1 192 2.24e-78 247
Msa0476700 MtrunA17_Chr1g0149831 65.672 201 60 3 67 266 1 193 3.68e-76 243
Msa0476700 MtrunA17_Chr3g0134481 83.459 133 22 0 1 133 1 133 3.85e-69 223
Msa0476700 MtrunA17_Chr3g0134481 73.585 53 14 0 197 249 131 183 1.36e-20 90.1
Msa0476700 MtrunA17_Chr4g0074421 56.923 195 75 3 58 252 2 187 7.41e-62 204
Msa0476700 MtrunA17_Chr4g0009851 41.700 247 112 4 8 254 11 225 3.77e-52 182
Msa0476700 MtrunA17_Chr4g0009901 39.516 248 118 3 8 255 10 225 1.29e-47 168
Msa0476700 MtrunA17_Chr4g0009981 40.099 202 90 3 53 254 2 172 8.16e-39 144
Msa0476700 MtrunA17_Chr6g0471041 36.078 255 129 5 1 254 7 228 4.03e-38 146
Msa0476700 MtrunA17_Chr8g0391911 34.231 260 151 5 5 257 6 252 1.53e-33 129
Msa0476700 MtrunA17_Chr8g0350761 29.297 256 161 6 11 250 20 271 1.45e-25 110
Msa0476700 MtrunA17_Chr6g0473731 34.706 170 84 3 88 256 10 153 6.78e-24 105
Msa0476700 MtrunA17_Chr3g0127941 31.677 161 98 3 12 161 56 215 4.72e-23 104
Msa0476700 MtrunA17_Chr4g0031961 46.667 105 53 1 164 265 94 198 3.60e-22 97.8
Msa0476700 MtrunA17_Chr6g0469321 66.667 75 24 1 214 287 70 144 5.99e-22 93.6
Msa0476700 MtrunA17_Chr4g0011071 32.934 167 81 3 58 224 39 174 7.85e-22 93.2
Msa0476700 MtrunA17_Chr7g0276361 32.039 206 115 5 1 198 1 189 1.56e-21 99.0
Msa0476700 MtrunA17_Chr6g0456631 33.548 155 96 4 5 157 6 155 1.63e-21 92.0
Msa0476700 MtrunA17_Chr1g0181811 37.705 122 73 2 12 130 85 206 1.74e-21 99.4
Msa0476700 MtrunA17_Chr8g0383961 36.923 130 82 0 1 130 7 136 1.82e-21 94.7
Msa0476700 MtrunA17_Chr4g0030271 39.344 122 71 1 12 130 89 210 2.13e-21 99.4
Msa0476700 MtrunA17_Chr7g0255711 56.000 75 32 1 186 259 78 152 5.09e-21 94.0
Msa0476700 MtrunA17_Chr8g0345901 34.868 152 88 2 14 162 38 181 7.89e-21 97.1
Msa0476700 MtrunA17_Chr3g0091641 34.677 124 78 1 12 132 24 147 1.74e-19 92.4
Msa0476700 MtrunA17_Chr4g0009991 36.486 148 62 2 100 247 1 116 2.05e-19 84.7
Msa0476700 MtrunA17_Chr4g0061021 33.582 134 84 2 4 132 23 156 6.30e-18 87.8
Msa0476700 MtrunA17_Chr2g0324891 45.455 88 48 0 178 265 141 228 7.98e-18 86.3
Msa0476700 MtrunA17_Chr4g0040481 50.685 73 36 0 193 265 153 225 8.50e-18 86.3
Msa0476700 MtrunA17_Chr5g0400241 56.061 66 29 0 191 256 304 369 9.88e-18 87.0
Msa0476700 MtrunA17_Chr5g0400241 37.097 124 74 2 8 130 14 134 1.78e-13 73.6
Msa0476700 MtrunA17_Chr4g0054981 60.656 61 24 0 196 256 308 368 3.13e-17 85.5
Msa0476700 MtrunA17_Chr4g0054981 33.065 124 79 2 8 130 14 134 5.36e-12 68.9
Msa0476700 MtrunA17_Chr4g0010001 39.506 81 48 1 8 88 10 89 5.64e-14 67.8
Msa0476700 MtrunA17_Chr5g0402631 39.200 125 64 5 197 318 213 328 1.04e-13 73.2
Msa0476700 MtrunA17_Chr1g0198601 45.679 81 42 2 191 269 204 284 1.46e-13 72.8
Msa0476700 MtrunA17_Chr5g0423031 38.000 100 56 3 8 106 10 104 1.64e-13 69.3
Msa0476700 MtrunA17_Chr7g0274471 62.500 56 20 1 196 250 216 271 3.46e-13 72.0
Msa0476700 MtrunA17_Chr1g0190301 56.897 58 24 1 194 250 171 228 8.91e-13 70.5
Msa0476700 MtrunA17_Chr5g0422621 40.230 87 50 2 185 270 186 271 1.35e-12 69.7
Msa0476700 MtrunA17_Chr4g0045361 38.318 107 50 3 197 298 273 368 1.39e-12 70.1
Msa0476700 MtrunA17_Chr7g0261911 53.968 63 28 1 194 255 258 320 2.38e-12 69.7
Msa0476700 MtrunA17_Chr3g0134471 50.000 66 9 1 246 311 4 45 7.29e-12 60.8
Msa0476700 MtrunA17_Chr5g0417521 50.847 59 28 1 194 251 11 69 1.42e-11 66.6
Msa0476700 MtrunA17_Chr8g0352871 28.571 161 88 3 14 147 11 171 3.26e-11 62.8
Msa0476700 MtrunA17_Chr4g0062921 48.387 62 31 1 197 257 234 295 3.79e-11 65.9
Msa0476700 MtrunA17_Chr6g0461641 49.153 59 29 1 194 251 38 96 6.98e-11 64.7
Msa0476700 MtrunA17_Chr2g0321461 49.153 59 29 1 194 251 41 99 7.10e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476700 AT2G25180.1 52.752 436 155 13 6 419 11 417 5.20e-128 390
Msa0476700 AT4G31920.1 53.117 369 109 9 6 355 11 334 2.88e-109 340
Msa0476700 AT3G16857.1 55.674 282 93 5 8 266 33 305 9.87e-95 306
Msa0476700 AT3G16857.2 55.674 282 93 5 8 266 33 305 2.56e-94 305
Msa0476700 AT5G58080.1 49.319 367 145 9 2 349 8 352 4.01e-92 298
Msa0476700 AT2G01760.1 56.538 260 110 3 6 262 5 264 3.69e-86 275
Msa0476700 AT1G67710.1 57.769 251 97 4 9 256 8 252 7.17e-82 268
Msa0476700 AT2G01760.2 51.042 288 110 4 6 262 5 292 6.28e-80 259
Msa0476700 AT3G16857.3 54.733 243 78 5 47 266 2 235 2.77e-75 253
Msa0476700 AT2G01760.3 54.774 199 87 3 67 262 1 199 2.21e-56 194
Msa0476700 AT1G67710.2 57.513 193 73 4 67 256 1 187 3.21e-55 195
Msa0476700 AT5G49240.1 39.167 240 141 2 8 247 38 272 1.64e-51 180
Msa0476700 AT3G62670.1 37.091 275 144 6 2 267 31 285 4.72e-42 158
Msa0476700 AT1G67710.3 52.601 173 73 4 87 256 12 178 5.23e-41 155
Msa0476700 AT1G49190.1 35.547 256 150 5 7 255 29 276 7.05e-40 151
Msa0476700 AT5G07210.2 29.683 347 197 10 10 328 14 341 1.67e-34 139
Msa0476700 AT5G07210.1 29.014 355 197 11 10 328 14 349 4.48e-32 132
Msa0476700 AT2G27070.1 30.576 278 154 8 10 256 14 283 3.97e-28 119
Msa0476700 AT2G46790.3 36.082 194 99 6 12 185 37 225 1.91e-25 110
Msa0476700 AT2G46790.1 36.082 194 99 6 12 185 37 225 2.55e-25 110
Msa0476700 AT1G49190.2 39.200 125 76 0 7 131 29 153 3.99e-25 110
Msa0476700 AT5G24470.1 35.294 170 94 5 6 168 42 202 1.33e-23 105
Msa0476700 AT5G59570.2 55.172 87 36 2 180 263 120 206 4.22e-23 100
Msa0476700 AT5G59570.1 55.172 87 36 2 180 263 120 206 4.22e-23 100
Msa0476700 AT3G46640.2 52.381 84 40 0 182 265 128 211 9.99e-23 100
Msa0476700 AT3G46640.1 52.381 84 40 0 182 265 128 211 9.99e-23 100
Msa0476700 AT3G46640.3 53.086 81 38 0 182 262 128 208 1.44e-22 99.8
Msa0476700 AT1G68210.1 26.937 271 171 4 12 257 13 281 5.10e-22 101
Msa0476700 AT5G60100.7 37.795 127 75 2 8 130 59 185 1.29e-21 98.2
Msa0476700 AT5G60100.6 37.795 127 75 2 8 130 59 185 1.29e-21 98.2
Msa0476700 AT5G60100.4 37.795 127 75 2 8 130 59 185 1.29e-21 98.2
Msa0476700 AT5G60100.5 37.795 127 75 2 8 130 59 185 1.79e-21 98.6
Msa0476700 AT5G60100.3 37.795 127 75 2 8 130 59 185 1.79e-21 98.6
Msa0476700 AT5G60100.1 37.795 127 75 2 8 130 59 185 1.79e-21 98.6
Msa0476700 AT5G60100.2 37.795 127 75 2 8 130 59 185 4.19e-21 97.8
Msa0476700 AT2G40970.1 65.000 60 21 0 197 256 104 163 8.87e-21 92.8
Msa0476700 AT5G05090.1 65.000 60 21 0 197 256 80 139 1.18e-20 92.8
Msa0476700 AT3G10760.1 65.000 60 21 0 197 256 104 163 1.21e-20 94.0
Msa0476700 AT5G02810.1 38.525 122 72 1 12 130 78 199 1.49e-20 96.7
Msa0476700 AT5G44190.2 59.155 71 29 0 196 266 145 215 3.65e-20 93.2
Msa0476700 AT5G44190.1 59.155 71 29 0 196 266 145 215 4.68e-20 93.2
Msa0476700 AT5G61380.1 34.677 124 78 1 12 132 19 142 6.44e-19 91.3
Msa0476700 AT2G20570.1 43.878 98 51 1 159 256 118 211 2.20e-17 85.5
Msa0476700 AT4G18020.8 41.748 103 53 1 161 256 252 354 3.10e-16 82.4
Msa0476700 AT4G18020.8 34.559 136 80 3 6 134 12 145 3.16e-13 72.8
Msa0476700 AT4G18020.11 41.748 103 53 1 161 256 252 354 3.10e-16 82.4
Msa0476700 AT4G18020.11 34.559 136 80 3 6 134 12 145 3.16e-13 72.8
Msa0476700 AT4G18020.4 41.748 103 53 1 161 256 252 354 3.10e-16 82.4
Msa0476700 AT4G18020.4 34.559 136 80 3 6 134 12 145 3.16e-13 72.8
Msa0476700 AT4G18020.5 41.748 103 53 1 161 256 252 354 3.10e-16 82.4
Msa0476700 AT4G18020.5 34.559 136 80 3 6 134 12 145 3.16e-13 72.8
Msa0476700 AT4G18020.10 41.748 103 53 1 161 256 252 354 3.10e-16 82.4
Msa0476700 AT4G18020.10 34.559 136 80 3 6 134 12 145 3.16e-13 72.8
Msa0476700 AT4G18020.7 41.748 103 53 1 161 256 252 354 3.10e-16 82.4
Msa0476700 AT4G18020.7 34.559 136 80 3 6 134 12 145 3.16e-13 72.8
Msa0476700 AT4G18020.3 41.748 103 53 1 161 256 252 354 3.51e-16 82.4
Msa0476700 AT4G18020.3 34.559 136 80 3 6 134 12 145 5.03e-13 72.4
Msa0476700 AT4G18020.2 41.748 103 53 1 161 256 252 354 3.51e-16 82.4
Msa0476700 AT4G18020.2 34.559 136 80 3 6 134 12 145 5.03e-13 72.4
Msa0476700 AT4G18020.1 41.748 103 53 1 161 256 252 354 3.51e-16 82.4
Msa0476700 AT4G18020.1 34.559 136 80 3 6 134 12 145 5.03e-13 72.4
Msa0476700 AT4G18020.6 41.748 103 53 1 161 256 252 354 3.51e-16 82.4
Msa0476700 AT4G18020.6 34.559 136 80 3 6 134 12 145 5.03e-13 72.4
Msa0476700 AT4G18020.9 41.748 103 53 1 161 256 252 354 3.51e-16 82.4
Msa0476700 AT4G18020.9 34.559 136 80 3 6 134 12 145 5.03e-13 72.4
Msa0476700 AT2G20570.2 61.404 57 22 0 200 256 171 227 5.95e-16 81.3
Msa0476700 AT1G68670.1 31.818 154 90 4 181 333 198 337 7.45e-13 70.9
Msa0476700 AT4G13640.1 42.708 96 39 3 198 282 37 127 2.93e-12 68.2
Msa0476700 AT4G13640.2 42.708 96 39 3 198 282 37 127 3.05e-12 68.2
Msa0476700 AT1G49560.1 38.182 110 61 3 195 298 189 297 7.91e-12 67.4
Msa0476700 AT3G24120.1 42.105 95 39 3 198 281 41 130 1.24e-11 66.6
Msa0476700 AT3G24120.2 42.105 95 39 3 198 281 41 130 1.25e-11 66.6
Msa0476700 AT1G25550.1 51.667 60 28 1 197 255 208 267 1.44e-11 67.0
Msa0476700 AT3G04030.1 50.847 59 28 1 194 251 41 99 3.08e-11 66.2
Msa0476700 AT3G04030.3 50.847 59 28 1 194 251 41 99 3.52e-11 65.9
Msa0476700 AT2G03500.1 46.875 64 33 1 195 257 230 293 3.62e-11 66.2
Msa0476700 AT4G37180.1 49.180 61 30 1 196 255 208 268 4.70e-11 65.5
Msa0476700 AT4G37180.2 49.180 61 30 1 196 255 215 275 5.86e-11 65.1
Msa0476700 AT4G00760.1 27.670 206 121 8 30 215 1 198 7.33e-11 64.7
Msa0476700 AT1G10470.3 32.061 131 77 2 14 132 22 152 7.59e-11 63.5
Msa0476700 AT1G10470.1 32.061 131 77 2 14 132 36 166 8.58e-11 63.5

Find 186 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATTAGTTTAATGTTTA+AGG 0.058899 3_3:-80561575 Msa0476700:three_prime_UTR
CGTTGATCCGGGAATTTATT+TGG 0.160454 3_3:+80563184 None:intergenic
GCAAGATAAGATGAAATTAT+TGG 0.247006 3_3:-80561884 Msa0476700:CDS
TCCAACTTGTCTCATGGTTT+TGG 0.250920 3_3:-80565829 Msa0476700:CDS
TCAAGCGACGTGCCGTTATC+TGG 0.269805 3_3:-80562965 Msa0476700:CDS
ACATTTGGCAGCATGTAATT+AGG 0.295640 3_3:-80564333 Msa0476700:CDS
TATCTTTGTGACAGGAGTTT+TGG 0.297920 3_3:-80561825 Msa0476700:exon
TCCAGCATGCTTCATTTGTA+TGG 0.304531 3_3:+80562613 None:intergenic
ATTCCTTGGGAGTGCATATC+TGG 0.307526 3_3:+80562830 None:intergenic
TATTTGAGAATGGGTGGTTC+TGG 0.310707 3_3:-80563508 Msa0476700:CDS
TTGAAGAGAAAGAATTTGTT+TGG 0.311046 3_3:+80562939 None:intergenic
CGTTAATCAGAATATTCTTC+AGG 0.324708 3_3:-80563305 Msa0476700:CDS
TGAACTTGTGGGACTTGAAA+TGG 0.326717 3_3:-80564605 Msa0476700:CDS
GCTAGTATGGTGGCAGCCTT+AGG 0.331673 3_3:-80563547 Msa0476700:CDS
GCAGAAAATTCAGATGAAAA+TGG 0.333558 3_3:-80564220 Msa0476700:CDS
GTTTCCATATAATTATTTCT+TGG 0.335612 3_3:+80561412 None:intergenic
GTTGATCCGGGAATTTATTT+GGG 0.335841 3_3:+80563185 None:intergenic
TCCCATCCCAAATAAATTCC+CGG 0.335864 3_3:-80563191 Msa0476700:CDS
TGGTAACGAGGGAAATGAAA+TGG 0.336379 3_3:+80566011 None:intergenic
CCCTTGCAAGCGGGGTATCC+TGG 0.337535 3_3:-80562863 Msa0476700:CDS
AATTGTTTAAATTACGTGAT+TGG 0.348210 3_3:+80563368 None:intergenic
GCAAAACTTGGCCGTTGATC+CGG 0.363698 3_3:+80563172 None:intergenic
AACTCTCTTGCTCCAGTTAA+CGG 0.366243 3_3:-80562698 Msa0476700:CDS
AGAAGAAGCCTCGGGTTGTT+TGG 0.367984 3_3:-80564111 Msa0476700:CDS
GCTACCAAGAAATAATTATA+TGG 0.369196 3_3:-80561416 Msa0476700:three_prime_UTR
TAGAGGAGCTAAAGAACATT+TGG 0.372140 3_3:-80564348 Msa0476700:CDS
CTGGAATTTAAGTTGATCAT+TGG 0.373200 3_3:+80563342 None:intergenic
TCCTTCGGGGCTTCTTCAGT+TGG 0.386130 3_3:-80563392 Msa0476700:CDS
CTGAAGAATATTCTGATTAA+CGG 0.389124 3_3:+80563306 None:intergenic
TCTTGGTTCACTGGAATACT+TGG 0.389557 3_3:-80562513 Msa0476700:CDS
AACGGTAATTTGCCATTTCA+AGG 0.393348 3_3:-80562779 Msa0476700:CDS
CTGCCACCATACTAGCTTGT+TGG 0.395940 3_3:+80563554 None:intergenic
CGGTCTTCCCATCCTTGAAA+TGG 0.402240 3_3:+80562767 None:intergenic
GAAAGAAAACACGGAGGTAT+AGG 0.402851 3_3:-80563082 Msa0476700:CDS
GCTGAAACCTGTGAGATTAG+AGG 0.402851 3_3:-80564365 Msa0476700:CDS
AACACTCCAACTAGTCTTAA+CGG 0.404206 3_3:-80563427 Msa0476700:CDS
TTCTAATAATCTTGGTTCAC+TGG 0.404941 3_3:-80562522 Msa0476700:CDS
ATTCTGATTAACGGGAGTTA+TGG 0.410279 3_3:+80563315 None:intergenic
TAATCTTTCGTTCTGACAGC+AGG 0.411338 3_3:+80561460 None:intergenic
CCTTCGGGGCTTCTTCAGTT+GGG 0.414763 3_3:-80563391 Msa0476700:CDS
CAAGATAAGATGAAATTATT+GGG 0.416183 3_3:-80561883 Msa0476700:CDS
ATTTCAGTGTTGTCTGCATA+TGG 0.417968 3_3:-80564439 Msa0476700:intron
GGTAACGAGGGAAATGAAAT+GGG 0.423435 3_3:+80566012 None:intergenic
CACGCATTCCGATGGGAAAA+CGG 0.428750 3_3:+80565871 None:intergenic
TTGGTAGCAACAATCCCTTC+AGG 0.429338 3_3:+80561431 None:intergenic
GAAAACTCCTAGGACAAAAC+TGG 0.429891 3_3:+80561722 None:intergenic
AAGGTAGGCACGGTGATAAT+TGG 0.437512 3_3:-80562988 Msa0476700:CDS
CGAGGCTTCTTCTGAGCTGA+TGG 0.438400 3_3:+80564121 None:intergenic
AAACACGGAGGTATAGGAAT+AGG 0.439930 3_3:-80563076 Msa0476700:CDS
TGCAAACCAACAAGCTAGTA+TGG 0.442595 3_3:-80563560 Msa0476700:CDS
AGGTGGAGCTAGTTGTTGTC+TGG 0.446742 3_3:+80562657 None:intergenic
AGATCAATCTTATTTGAGAA+TGG 0.446802 3_3:-80563518 Msa0476700:CDS
GAACTAGAGGTGGCAAAACT+TGG 0.447157 3_3:+80563160 None:intergenic
GTTGCTGCTGTTAATCAGTT+AGG 0.449852 3_3:-80564064 Msa0476700:CDS
TGAAGAATATTCTGATTAAC+GGG 0.453613 3_3:+80563307 None:intergenic
GATCAATCTTATTTGAGAAT+GGG 0.453918 3_3:-80563517 Msa0476700:CDS
ATCCGGGAATTTATTTGGGA+TGG 0.454627 3_3:+80563189 None:intergenic
AGCTTAAATCCATCCATGTC+AGG 0.455967 3_3:+80564631 None:intergenic
GGTAAGTAGCATCCTGATTA+CGG 0.456384 3_3:+80562747 None:intergenic
GACTAAGAAAAGAAAGGATC+AGG 0.456770 3_3:-80564191 Msa0476700:CDS
GCTTCTTTGCCCTTGCAAGC+GGG 0.456904 3_3:-80562872 Msa0476700:CDS
GGAGGTATAGGAATAGGATA+TGG 0.457148 3_3:-80563070 Msa0476700:CDS
TGCTGGCTTATGATATTAGC+TGG 0.457220 3_3:+80562551 None:intergenic
GGCTTCTTTGCCCTTGCAAG+CGG 0.465152 3_3:-80562873 Msa0476700:CDS
CAAAACTTGGCCGTTGATCC+GGG 0.465888 3_3:+80563173 None:intergenic
GAAGATGAGGATAAAGAGAA+TGG 0.467439 3_3:-80564160 Msa0476700:CDS
AATTCACCTGAGTATATAAA+CGG 0.467724 3_3:-80562797 Msa0476700:CDS
GAGCTAGTTGTTGTCTGGCC+TGG 0.468240 3_3:+80562662 None:intergenic
GATTATTAGAAAACTTCTGC+TGG 0.476268 3_3:+80562534 None:intergenic
TCCAAAACCATGAGACAAGT+TGG 0.479542 3_3:+80565828 None:intergenic
AATTATCCCACTAGGTGAAA+AGG 0.479567 3_3:+80563459 None:intergenic
ACACTCCAACTAGTCTTAAC+GGG 0.480069 3_3:-80563426 Msa0476700:CDS
CGACGATCCAACTTGTCTCA+TGG 0.481091 3_3:-80565835 Msa0476700:CDS
CCAGCATGCTTCATTTGTAT+GGG 0.481160 3_3:+80562614 None:intergenic
TTTAGCTCCTCTAATCTCAC+AGG 0.481770 3_3:+80564358 None:intergenic
AGGATGGGAAGACCGTAATC+AGG 0.483908 3_3:-80562759 Msa0476700:CDS
TTTAAGCTGCTTGAACTTGT+GGG 0.484142 3_3:-80564616 Msa0476700:CDS
ACCAGGATACCCCGCTTGCA+AGG 0.485505 3_3:+80562862 None:intergenic
AACAGAGAAAAGAGTGGTAA+TGG 0.486289 3_3:+80565953 None:intergenic
TCCGGGAATTTATTTGGGAT+GGG 0.491640 3_3:+80563190 None:intergenic
CCATGCCCGTTAAGACTAGT+TGG 0.492442 3_3:+80563421 None:intergenic
CAGGGAATGCCAATGTCCAT+AGG 0.498172 3_3:-80563286 Msa0476700:CDS
CCCATACAAATGAAGCATGC+TGG 0.498373 3_3:-80562614 Msa0476700:CDS
GTTAATCAGAATATTCTTCA+GGG 0.498546 3_3:-80563304 Msa0476700:CDS
TCCGATGGGAAAACGGTCAC+CGG 0.502454 3_3:+80565878 None:intergenic
TCTTTCTCTATGCTGGATCA+AGG 0.503800 3_3:-80563007 Msa0476700:CDS
ATTGATAATTCCTCCTCTCA+TGG 0.508954 3_3:-80561760 Msa0476700:three_prime_UTR
TTTGTTTGGATTCCAGATAA+CGG 0.510003 3_3:+80562953 None:intergenic
GTAATTTGCCATTTCAAGGA+TGG 0.513037 3_3:-80562775 Msa0476700:CDS
GAAGAAGAAGTCTGATCCAA+AGG 0.514805 3_3:-80564311 Msa0476700:CDS
GACAAAACTACTTCTGATAG+TGG 0.516959 3_3:-80564265 Msa0476700:CDS
TTTGAGATACCGAGACTTGG+AGG 0.517387 3_3:+80563133 None:intergenic
GAACGTGGCAAGCCATCTCC+AGG 0.523004 3_3:-80563702 Msa0476700:intron
ATTTAAGCTGCTTGAACTTG+TGG 0.531591 3_3:-80564617 Msa0476700:CDS
ATACTTGGCGAGTTCAATGA+TGG 0.533419 3_3:-80562498 Msa0476700:CDS
CTAGTATGGTGGCAGCCTTA+GGG 0.534344 3_3:-80563546 Msa0476700:CDS
TGTTATTGCTTGACTAGTTG+TGG 0.534638 3_3:+80564717 None:intergenic
CTAGTTGTTGTCTGGCCTGG+TGG 0.535200 3_3:+80562665 None:intergenic
CTTCTTTGCCCTTGCAAGCG+GGG 0.537483 3_3:-80562871 Msa0476700:CDS
ACTTGACTCTAACTTGACTC+TGG 0.537992 3_3:+80561668 None:intergenic
TAATTTGCCATTTCAAGGAT+GGG 0.541605 3_3:-80562774 Msa0476700:CDS
AAATTACCGTTTATATACTC+AGG 0.541639 3_3:+80562791 None:intergenic
GCCTCGGGTTGTTTGGTCTG+TGG 0.542268 3_3:-80564104 Msa0476700:CDS
GGCAGTGGACTAAGATCCGC+AGG 0.543371 3_3:-80564244 Msa0476700:CDS
TAACGGGAGTTATGGCTGAC+TGG 0.548521 3_3:+80563323 None:intergenic
ACTACTTCTGATAGTGGCAG+TGG 0.549024 3_3:-80564259 Msa0476700:CDS
TACCACTCAAATGTTACTTG+TGG 0.549615 3_3:-80562728 Msa0476700:CDS
CGACGGGGTATCTTTGTGAC+AGG 0.549898 3_3:-80561833 Msa0476700:exon
TTGTTTGAGATACCGAGACT+TGG 0.550776 3_3:+80563130 None:intergenic
TGTGCACATCACTGATTACC+AGG 0.551505 3_3:+80564656 None:intergenic
CATCAGCTCAGAAGAAGCCT+CGG 0.554303 3_3:-80564120 Msa0476700:CDS
GGCGAGAACACGCATTCCGA+TGG 0.558372 3_3:+80565863 None:intergenic
CCAGGATACCCCGCTTGCAA+GGG 0.561131 3_3:+80562863 None:intergenic
CAAATAAATTCCCGGATCAA+CGG 0.562184 3_3:-80563183 Msa0476700:CDS
AGTCTCGGTATCTCAAACAA+TGG 0.562603 3_3:-80563127 Msa0476700:CDS
CAGATAATCACAGGCACCAT+GGG 0.562735 3_3:+80564387 None:intergenic
GGCGAGTTCAATGATGGGAC+AGG 0.562860 3_3:-80562492 Msa0476700:intron
AAAGATTAAACGTGCCTGAA+GGG 0.564313 3_3:-80561445 Msa0476700:three_prime_UTR
CAATCTTATTTGAGAATGGG+TGG 0.565295 3_3:-80563514 Msa0476700:CDS
GAGGCTTCTTCTGAGCTGAT+GGG 0.565647 3_3:+80564122 None:intergenic
AGTTCTCATCCTCCAAGTCT+CGG 0.566191 3_3:-80563142 Msa0476700:CDS
AAAGCTGACTAAGAAAAGAA+AGG 0.566687 3_3:-80564197 Msa0476700:CDS
AGGGAATGCCAATGTCCATA+GGG 0.567298 3_3:-80563285 Msa0476700:CDS
TTGCAAGTGATCAAACCCTA+TGG 0.568247 3_3:+80563270 None:intergenic
TCTCTATGCTGGATCAAGGT+AGG 0.568314 3_3:-80563003 Msa0476700:CDS
TGATCACTTGCAAAACAGCA+AGG 0.568375 3_3:-80563260 Msa0476700:CDS
AGATTGATCTGCACTCCCTA+AGG 0.568615 3_3:+80563531 None:intergenic
GACAACAACTAGCTCCACCT+TGG 0.570450 3_3:-80562654 Msa0476700:CDS
AATCTTTCGTTCTGACAGCA+GGG 0.578925 3_3:+80561461 None:intergenic
CTCAAACAATGGCTTGATGT+CGG 0.579465 3_3:-80563116 Msa0476700:CDS
TGTTCCTCCTTCAGATAACA+TGG 0.580834 3_3:-80562894 Msa0476700:CDS
ATCCCACAAAGAAAACTCCT+AGG 0.581413 3_3:+80561712 None:intergenic
ATCAGCTCAGAAGAAGCCTC+GGG 0.581453 3_3:-80564119 Msa0476700:CDS
GAAAGATTAAACGTGCCTGA+AGG 0.583000 3_3:-80561446 Msa0476700:three_prime_UTR
TATGCGATAATTACTCCGAC+GGG 0.584211 3_3:-80561849 Msa0476700:CDS
AGATCCCCACTTACTTATGA+CGG 0.584541 3_3:+80564576 None:intergenic
CCAACTAGTCTTAACGGGCA+TGG 0.588692 3_3:-80563421 Msa0476700:CDS
GCAGATAATCACAGGCACCA+TGG 0.592029 3_3:+80564386 None:intergenic
TGATCAAACCCTATGGACAT+TGG 0.593062 3_3:+80563277 None:intergenic
TGCATATGGTGATACAAAGC+TGG 0.593897 3_3:-80564425 Msa0476700:CDS
GATCCCCACTTACTTATGAC+GGG 0.593976 3_3:+80564577 None:intergenic
AGAAAATTCTGAATGTTGAG+AGG 0.594209 3_3:+80563027 None:intergenic
ATATGCGATAATTACTCCGA+CGG 0.598221 3_3:-80561850 Msa0476700:CDS
GTGCACATGCCTGACATGGA+TGG 0.600433 3_3:-80564640 Msa0476700:CDS
CCCAACTGAAGAAGCCCCGA+AGG 0.603189 3_3:+80563391 None:intergenic
AAATAGCATGTGTCCATGAG+AGG 0.605548 3_3:+80561747 None:intergenic
AGATTACCAATTATCCCACT+AGG 0.605896 3_3:+80563451 None:intergenic
AAAGAAGCCATGTTATCTGA+AGG 0.609057 3_3:+80562887 None:intergenic
AGGTTTCAGCAGATAATCAC+AGG 0.609824 3_3:+80564378 None:intergenic
GATCACTTGCAAAACAGCAA+GGG 0.610593 3_3:-80563259 Msa0476700:CDS
TGAGCTGCATTCAGTTAACT+CGG 0.614968 3_3:+80562586 None:intergenic
TGATGTGCACATGCCTGACA+TGG 0.615041 3_3:-80564644 Msa0476700:CDS
TCAGGATGAAGACGAAGATG+AGG 0.615403 3_3:-80564173 Msa0476700:CDS
ACAAGTTGGATCGTCGTCAA+CGG 0.615563 3_3:+80565842 None:intergenic
GCGAGAACACGCATTCCGAT+GGG 0.617268 3_3:+80565864 None:intergenic
GACCGTGGTATTGACATCTA+CGG 0.617438 3_3:+80565796 None:intergenic
ATATCTGGCAACGAACCACC+AGG 0.619562 3_3:+80562845 None:intergenic
TTGCCAGATATGCACTCCCA+AGG 0.620552 3_3:-80562833 Msa0476700:CDS
ATGCTGGATCAAGGTAGGCA+CGG 0.622381 3_3:-80562998 Msa0476700:CDS
GATAAGATGAAATTATTGGG+TGG 0.625103 3_3:-80561880 Msa0476700:CDS
ATCCACAAGTAACATTTGAG+TGG 0.625700 3_3:+80562726 None:intergenic
CCCACTTACTTATGACGGGA+AGG 0.626480 3_3:+80564581 None:intergenic
GAAGCCATGTTATCTGAAGG+AGG 0.632238 3_3:+80562890 None:intergenic
GATACAAAGCTGGTGATGAA+AGG 0.634012 3_3:-80564415 Msa0476700:CDS
ATCTTTCGTTCTGACAGCAG+GGG 0.641270 3_3:+80561462 None:intergenic
AAATATCACAAGGGAGAACG+TGG 0.641409 3_3:-80563717 Msa0476700:CDS
TACTTGGCGAGTTCAATGAT+GGG 0.644216 3_3:-80562497 Msa0476700:CDS
TTGCAAGCGGGGTATCCTGG+TGG 0.644472 3_3:-80562860 Msa0476700:CDS
TAGCATGTGTCCATGAGAGG+AGG 0.648867 3_3:+80561750 None:intergenic
ACTTGGAGGATGAGAACTAG+AGG 0.662512 3_3:+80563147 None:intergenic
TAACAGCAGCAACAAACTTG+CGG 0.664827 3_3:+80564074 None:intergenic
TGGAGGATGAGAACTAGAGG+TGG 0.666225 3_3:+80563150 None:intergenic
TCCACAGACCAAACAACCCG+AGG 0.670707 3_3:+80564103 None:intergenic
AAACAAAGACAAGTTTGACC+TGG 0.671629 3_3:-80564674 Msa0476700:CDS
CTCCGTAGATGTCAATACCA+CGG 0.676022 3_3:-80565798 Msa0476700:intron
CAATCTAGAATTCATCAATG+AGG 0.682137 3_3:+80561779 None:intergenic
TGAATGTCGAAAATATCACA+AGG 0.689686 3_3:-80563727 Msa0476700:CDS
GTGATGAAAGGAATTTCCCA+TGG 0.694201 3_3:-80564403 Msa0476700:CDS
ACGCACCCTGAAAGAAAACA+CGG 0.699020 3_3:-80563091 Msa0476700:CDS
CTATGAAACAGAGAAAAGAG+TGG 0.699177 3_3:+80565947 None:intergenic
AAACCAACAAGCTAGTATGG+TGG 0.708833 3_3:-80563557 Msa0476700:CDS
GAATGTCGAAAATATCACAA+GGG 0.725612 3_3:-80563726 Msa0476700:CDS
CTGTCACAAAGATACCCCGT+CGG 0.726754 3_3:+80561834 None:intergenic
ATGCGATAATTACTCCGACG+GGG 0.780483 3_3:-80561848 Msa0476700:CDS
AGAGAATGGTAATGACAACG+AGG 0.788270 3_3:-80564146 Msa0476700:CDS
CACCCTGAAAGAAAACACGG+AGG 0.809478 3_3:-80563088 Msa0476700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTATTTGAATTTC+TGG + chr3_3:80561808-80561827 None:intergenic 10.0%
!! ATAAAAAAAAACATGTCTTT+AGG - chr3_3:80561817-80561836 Msa0476700:three_prime_UTR 15.0%
!!! ATATATTTCATTTTGTTTAG+TGG - chr3_3:80562252-80562271 Msa0476700:intron 15.0%
!! TCAAAATGAATAAATAGAAA+AGG + chr3_3:80562898-80562917 None:intergenic 15.0%
!!! ATCATATCAAGAATTTTTTT+GGG + chr3_3:80563669-80563688 None:intergenic 15.0%
!! ATTAAAAAATTTAGTATCCA+AGG + chr3_3:80564781-80564800 None:intergenic 15.0%
!!! ACATTTTTTGAATATAATGT+TGG - chr3_3:80564951-80564970 Msa0476700:intron 15.0%
!! TGAAATTTGAAGATTTAAAT+TGG - chr3_3:80565192-80565211 Msa0476700:intron 15.0%
!!! CAATTTTTACAGATTTTATG+TGG - chr3_3:80562018-80562037 Msa0476700:intron 20.0%
!! ATATCTAGTAAAAATATGCT+TGG + chr3_3:80562154-80562173 None:intergenic 20.0%
!!! TATTTTTACTAGATATGTGA+AGG - chr3_3:80562158-80562177 Msa0476700:intron 20.0%
!! ATTAACACCAAAACAAAAAA+TGG + chr3_3:80562308-80562327 None:intergenic 20.0%
!!! TCAAAATGTTTTTGAATATC+TGG - chr3_3:80563474-80563493 Msa0476700:CDS 20.0%
!! ATAATACTCAAATTCAGTAA+TGG + chr3_3:80563613-80563632 None:intergenic 20.0%
!!! CATCATATCAAGAATTTTTT+TGG + chr3_3:80563670-80563689 None:intergenic 20.0%
!! AATTGTTTAAATTACGTGAT+TGG + chr3_3:80564050-80564069 None:intergenic 20.0%
!! ATTAGTAAAAATCATTCCTT+GGG + chr3_3:80564601-80564620 None:intergenic 20.0%
!! AATTAGTAAAAATCATTCCT+TGG + chr3_3:80564602-80564621 None:intergenic 20.0%
!!! TGTATAGTTTTTTTTGCATA+TGG - chr3_3:80565010-80565029 Msa0476700:intron 20.0%
!! AATTTGAAGATTTAAATTGG+TGG - chr3_3:80565195-80565214 Msa0476700:intron 20.0%
!! AAGAACATCAATGAAATATA+TGG + chr3_3:80565248-80565267 None:intergenic 20.0%
!!! CATGTTGTTTTATTTAACTT+AGG - chr3_3:80565393-80565412 Msa0476700:intron 20.0%
!! CAAGATAAGATGAAATTATT+GGG - chr3_3:80565532-80565551 Msa0476700:intron 20.0%
!!! TCTCATTAGTTTAATGTTTA+AGG - chr3_3:80565840-80565859 Msa0476700:CDS 20.0%
!!! GTTTCCATATAATTATTTCT+TGG + chr3_3:80566006-80566025 None:intergenic 20.0%
!!! ATGATTAATTTTGGTAACGA+GGG + chr3_3:80561418-80561437 None:intergenic 25.0%
!!! AATGATTAATTTTGGTAACG+AGG + chr3_3:80561419-80561438 None:intergenic 25.0%
! AACGATATTGTGTAGATATT+TGG - chr3_3:80561877-80561896 Msa0476700:CDS 25.0%
!! GGAACTTTTACTAAGAATAA+AGG - chr3_3:80561898-80561917 Msa0476700:intron 25.0%
! ATGAAAAGAGTCATGATTTA+GGG - chr3_3:80561925-80561944 Msa0476700:intron 25.0%
! TGTTTCTTTATACTATCACA+GGG + chr3_3:80562000-80562019 None:intergenic 25.0%
!! TTGTTTCTTTATACTATCAC+AGG + chr3_3:80562001-80562020 None:intergenic 25.0%
! CAAAGACAAGAAAAGAAAAA+TGG + chr3_3:80562508-80562527 None:intergenic 25.0%
! TACTAATCATGAAGAAATAC+AGG + chr3_3:80562564-80562583 None:intergenic 25.0%
!!! AAGTGATACTTATTTCTGAT+TGG - chr3_3:80562663-80562682 Msa0476700:CDS 25.0%
!!! AGTGATACTTATTTCTGATT+GGG - chr3_3:80562664-80562683 Msa0476700:CDS 25.0%
! AAGAAAAAAATTAACAGCTG+AGG + chr3_3:80562875-80562894 None:intergenic 25.0%
!!! TCATTTTGACTCTTGTTTAT+TGG - chr3_3:80562909-80562928 Msa0476700:CDS 25.0%
! ATAAAAATTGTTTGTGTTGC+AGG + chr3_3:80563402-80563421 None:intergenic 25.0%
!!! CGATGTTTATTTTAAATCCT+AGG - chr3_3:80563499-80563518 Msa0476700:CDS 25.0%
!!! TCATAAGTCATTTTAAACCT+AGG + chr3_3:80563519-80563538 None:intergenic 25.0%
! TAATGGAATACTTTATGACA+TGG + chr3_3:80563596-80563615 None:intergenic 25.0%
! TAAAGAACTAGAAAAATACC+TGG + chr3_3:80563734-80563753 None:intergenic 25.0%
! ATTTCTTTCACTGAATGTTT+CGG - chr3_3:80563778-80563797 Msa0476700:intron 25.0%
!! AGATCAATCTTATTTGAGAA+TGG - chr3_3:80563897-80563916 Msa0476700:intron 25.0%
!! GATCAATCTTATTTGAGAAT+GGG - chr3_3:80563898-80563917 Msa0476700:intron 25.0%
! TGAAGAATATTCTGATTAAC+GGG + chr3_3:80564111-80564130 None:intergenic 25.0%
! CTGAAGAATATTCTGATTAA+CGG + chr3_3:80564112-80564131 None:intergenic 25.0%
! GTTAATCAGAATATTCTTCA+GGG - chr3_3:80564111-80564130 Msa0476700:CDS 25.0%
!! TTGAAGAGAAAGAATTTGTT+TGG + chr3_3:80564479-80564498 None:intergenic 25.0%
! AATTCACCTGAGTATATAAA+CGG - chr3_3:80564618-80564637 Msa0476700:CDS 25.0%
! AAATTACCGTTTATATACTC+AGG + chr3_3:80564627-80564646 None:intergenic 25.0%
! AAAAAATTTAGTATCCAAGG+TGG + chr3_3:80564778-80564797 None:intergenic 25.0%
!! CAGAAGTTTTCTAATAATCT+TGG - chr3_3:80564885-80564904 Msa0476700:intron 25.0%
! TATAATCTAATCAGTATGTG+TGG + chr3_3:80565073-80565092 None:intergenic 25.0%
!!! AATGATTTTAAGTCTTCTCT+CGG + chr3_3:80565159-80565178 None:intergenic 25.0%
!!! AAACATTTGTTTTTCTATCC+TGG - chr3_3:80565337-80565356 Msa0476700:intron 25.0%
!! AAGCAAAATATTTAGGACAA+GGG + chr3_3:80565474-80565493 None:intergenic 25.0%
! ACTATGGAAGCAAAATATTT+AGG + chr3_3:80565481-80565500 None:intergenic 25.0%
! AACATGGTATCAAATTACTA+TGG + chr3_3:80565497-80565516 None:intergenic 25.0%
! GCAAGATAAGATGAAATTAT+TGG - chr3_3:80565531-80565550 Msa0476700:intron 25.0%
! GCTACCAAGAAATAATTATA+TGG - chr3_3:80565999-80566018 Msa0476700:five_prime_UTR 25.0%
!! ACTGATTTGTGAGAGAAAAA+TGG - chr3_3:80561508-80561527 Msa0476700:three_prime_UTR 30.0%
!! TCTTTAGGATCAAATCTAAC+TGG - chr3_3:80561832-80561851 Msa0476700:exon 30.0%
!! CTTTAGGATCAAATCTAACT+GGG - chr3_3:80561833-80561852 Msa0476700:exon 30.0%
GATGAAAAGAGTCATGATTT+AGG - chr3_3:80561924-80561943 Msa0476700:intron 30.0%
AAGTCAACACACTATGAATT+TGG + chr3_3:80561960-80561979 None:intergenic 30.0%
ACTTAATTATGTGCTTGCTT+GGG - chr3_3:80562120-80562139 Msa0476700:intron 30.0%
! AAGCAATGAAGCTCTAATTA+CGG + chr3_3:80562189-80562208 None:intergenic 30.0%
!! TTCATTTTGTTTAGTGGCTT+TGG - chr3_3:80562258-80562277 Msa0476700:intron 30.0%
!!! TGGTCAACCATTTTTTGTTT+TGG - chr3_3:80562298-80562317 Msa0476700:intron 30.0%
TTGACTATAACCAAGTGATT+GGG + chr3_3:80562485-80562504 None:intergenic 30.0%
!! TTCACTGTTGCTTTCTTTAT+TGG - chr3_3:80562602-80562621 Msa0476700:CDS 30.0%
!! GTGATACTTATTTCTGATTG+GGG - chr3_3:80562665-80562684 Msa0476700:CDS 30.0%
GCAGAAAATTCAGATGAAAA+TGG - chr3_3:80563195-80563214 Msa0476700:CDS 30.0%
AAAGCTGACTAAGAAAAGAA+AGG - chr3_3:80563218-80563237 Msa0476700:CDS 30.0%
ATAAAATTCAGTAAAGCTCG+AGG + chr3_3:80563438-80563457 None:intergenic 30.0%
!!! TAATGTTGTTTTACTTGCAG+AGG - chr3_3:80563638-80563657 Msa0476700:intron 30.0%
TGAATGTCGAAAATATCACA+AGG - chr3_3:80563688-80563707 Msa0476700:intron 30.0%
GAATGTCGAAAATATCACAA+GGG - chr3_3:80563689-80563708 Msa0476700:intron 30.0%
GAAACATTCAGTGAAAGAAA+TGG + chr3_3:80563779-80563798 None:intergenic 30.0%
TTTCTTTCACTGAATGTTTC+GGG - chr3_3:80563779-80563798 Msa0476700:intron 30.0%
!! AATGTTTCGGGTTTATGAAA+TGG - chr3_3:80563791-80563810 Msa0476700:intron 30.0%
!! CTGGAATTTAAGTTGATCAT+TGG + chr3_3:80564076-80564095 None:intergenic 30.0%
CGTTAATCAGAATATTCTTC+AGG - chr3_3:80564110-80564129 Msa0476700:CDS 30.0%
! TTGTTTTCACATCAGTATTC+AGG + chr3_3:80564200-80564219 None:intergenic 30.0%
AGAAAATTCTGAATGTTGAG+AGG + chr3_3:80564391-80564410 None:intergenic 30.0%
! AGAATTTTCTTTCTCTATGC+TGG - chr3_3:80564401-80564420 Msa0476700:CDS 30.0%
TTTGTTTGGATTCCAGATAA+CGG + chr3_3:80564465-80564484 None:intergenic 30.0%
! TAATTTGCCATTTCAAGGAT+GGG - chr3_3:80564641-80564660 Msa0476700:CDS 30.0%
GATTATTAGAAAACTTCTGC+TGG + chr3_3:80564884-80564903 None:intergenic 30.0%
TTCTAATAATCTTGGTTCAC+TGG - chr3_3:80564893-80564912 Msa0476700:intron 30.0%
CAAGGAAATAATGTTTGAGA+TGG + chr3_3:80565049-80565068 None:intergenic 30.0%
!! ATGATTTTAAGTCTTCTCTC+GGG + chr3_3:80565158-80565177 None:intergenic 30.0%
TTCATTGATGTTCTTTGTGA+TGG - chr3_3:80565253-80565272 Msa0476700:intron 30.0%
ATCCTATGTGAATGTTCTAA+AGG + chr3_3:80565315-80565334 None:intergenic 30.0%
!! TTTGTTTTTCTATCCTGGAT+TGG - chr3_3:80565342-80565361 Msa0476700:intron 30.0%
ACAACATGCTATATACTCAA+CGG + chr3_3:80565381-80565400 None:intergenic 30.0%
! AGCAAAATATTTAGGACAAG+GGG + chr3_3:80565473-80565492 None:intergenic 30.0%
! GAAGCAAAATATTTAGGACA+AGG + chr3_3:80565475-80565494 None:intergenic 30.0%
GATAAGATGAAATTATTGGG+TGG - chr3_3:80565535-80565554 Msa0476700:intron 30.0%
! CAATCTAGAATTCATCAATG+AGG + chr3_3:80565639-80565658 None:intergenic 30.0%
!! TATTTAACCAGTTTTGTCCT+AGG - chr3_3:80565686-80565705 Msa0476700:intron 30.0%
AACAGAGAAAAGAGTGGTAA+TGG + chr3_3:80561465-80561484 None:intergenic 35.0%
CTATGAAACAGAGAAAAGAG+TGG + chr3_3:80561471-80561490 None:intergenic 35.0%
GAGAGAAAAATGGATGATTC+CGG - chr3_3:80561518-80561537 Msa0476700:three_prime_UTR 35.0%
GATCAAATCTAACTGGGAAA+TGG - chr3_3:80561839-80561858 Msa0476700:CDS 35.0%
CACTTAATTATGTGCTTGCT+TGG - chr3_3:80562119-80562138 Msa0476700:intron 35.0%
! ATGAGCAACTTTTCCTACTA+CGG + chr3_3:80562224-80562243 None:intergenic 35.0%
TGGACTGAATATGCACTTTA+TGG - chr3_3:80562278-80562297 Msa0476700:intron 35.0%
TGACTAAACTCCGGAATATT+AGG + chr3_3:80562373-80562392 None:intergenic 35.0%
TAATATTCCGGAGTTTAGTC+AGG - chr3_3:80562372-80562391 Msa0476700:intron 35.0%
AATATTCCGGAGTTTAGTCA+GGG - chr3_3:80562373-80562392 Msa0476700:intron 35.0%
GTTGACTATAACCAAGTGAT+TGG + chr3_3:80562486-80562505 None:intergenic 35.0%
! ACTGTTGTTGCTTAGATTTC+AGG - chr3_3:80562536-80562555 Msa0476700:CDS 35.0%
! TGTTATTGCTTGACTAGTTG+TGG + chr3_3:80562701-80562720 None:intergenic 35.0%
!!! GTCTTTGTTTTCTCTCAACA+TGG + chr3_3:80562731-80562750 None:intergenic 35.0%
AAACAAAGACAAGTTTGACC+TGG - chr3_3:80562741-80562760 Msa0476700:CDS 35.0%
ATTTAAGCTGCTTGAACTTG+TGG - chr3_3:80562798-80562817 Msa0476700:CDS 35.0%
TTTAAGCTGCTTGAACTTGT+GGG - chr3_3:80562799-80562818 Msa0476700:CDS 35.0%
ATTTCAGTGTTGTCTGCATA+TGG - chr3_3:80562976-80562995 Msa0476700:CDS 35.0%
TAGAGGAGCTAAAGAACATT+TGG - chr3_3:80563067-80563086 Msa0476700:CDS 35.0%
ACATTTGGCAGCATGTAATT+AGG - chr3_3:80563082-80563101 Msa0476700:CDS 35.0%
!!! CTGGTTTTGTTTTTCTCCTT+TGG + chr3_3:80563123-80563142 None:intergenic 35.0%
!!! AGTAGTTTTGTCTGGTTTAC+TGG + chr3_3:80563142-80563161 None:intergenic 35.0%
!!! CTATCAGAAGTAGTTTTGTC+TGG + chr3_3:80563150-80563169 None:intergenic 35.0%
GACAAAACTACTTCTGATAG+TGG - chr3_3:80563150-80563169 Msa0476700:CDS 35.0%
GACTAAGAAAAGAAAGGATC+AGG - chr3_3:80563224-80563243 Msa0476700:CDS 35.0%
GAAGATGAGGATAAAGAGAA+TGG - chr3_3:80563255-80563274 Msa0476700:CDS 35.0%
TTATGATGATAGATGCCACT+TGG - chr3_3:80563533-80563552 Msa0476700:CDS 35.0%
! TATGATGATAGATGCCACTT+GGG - chr3_3:80563534-80563553 Msa0476700:CDS 35.0%
GAAATGAAATTCATCCCAAG+TGG + chr3_3:80563551-80563570 None:intergenic 35.0%
ACTAGAAAAATACCTGGAGA+TGG + chr3_3:80563728-80563747 None:intergenic 35.0%
! CAATCTTATTTGAGAATGGG+TGG - chr3_3:80563901-80563920 Msa0476700:intron 35.0%
AATTATCCCACTAGGTGAAA+AGG + chr3_3:80563959-80563978 None:intergenic 35.0%
! TTTTCACCTAGTGGGATAAT+TGG - chr3_3:80563958-80563977 Msa0476700:intron 35.0%
AGATTACCAATTATCCCACT+AGG + chr3_3:80563967-80563986 None:intergenic 35.0%
!! AACACTCCAACTAGTCTTAA+CGG - chr3_3:80563988-80564007 Msa0476700:intron 35.0%
ATTCTGATTAACGGGAGTTA+TGG + chr3_3:80564103-80564122 None:intergenic 35.0%
GTTGATCCGGGAATTTATTT+GGG + chr3_3:80564233-80564252 None:intergenic 35.0%
CAAATAAATTCCCGGATCAA+CGG - chr3_3:80564232-80564251 Msa0476700:CDS 35.0%
AAAGAAGCCATGTTATCTGA+AGG + chr3_3:80564531-80564550 None:intergenic 35.0%
! AACGGTAATTTGCCATTTCA+AGG - chr3_3:80564636-80564655 Msa0476700:CDS 35.0%
! GTAATTTGCCATTTCAAGGA+TGG - chr3_3:80564640-80564659 Msa0476700:CDS 35.0%
! TACCACTCAAATGTTACTTG+TGG - chr3_3:80564687-80564706 Msa0476700:CDS 35.0%
ATCCACAAGTAACATTTGAG+TGG + chr3_3:80564692-80564711 None:intergenic 35.0%
TTCCCATAAATGCTTCTGTA+TGG - chr3_3:80564976-80564995 Msa0476700:intron 35.0%
!! AGCCATACAGAAGCATTTAT+GGG + chr3_3:80564981-80565000 None:intergenic 35.0%
!! AAGCCATACAGAAGCATTTA+TGG + chr3_3:80564982-80565001 None:intergenic 35.0%
ACAAATATAACCATGCTGAC+TGG + chr3_3:80565129-80565148 None:intergenic 35.0%
CTAAAGGACATCGAAAGTTA+CGG + chr3_3:80565299-80565318 None:intergenic 35.0%
!! GTCCTTTAGAACATTCACAT+AGG - chr3_3:80565310-80565329 Msa0476700:intron 35.0%
ACAAGTTATTGTACCAATCC+AGG + chr3_3:80565358-80565377 None:intergenic 35.0%
TAAAGTATGCAATGCTCGTT+TGG - chr3_3:80565427-80565446 Msa0476700:intron 35.0%
ATATGCGATAATTACTCCGA+CGG - chr3_3:80565565-80565584 Msa0476700:intron 35.0%
! TATCTTTGTGACAGGAGTTT+TGG - chr3_3:80565590-80565609 Msa0476700:intron 35.0%
! ATTGATAATTCCTCCTCTCA+TGG - chr3_3:80565655-80565674 Msa0476700:intron 35.0%
! CTTGACTCTGGAAAAAGAAA+AGG + chr3_3:80565738-80565757 None:intergenic 35.0%
AAAGATTAAACGTGCCTGAA+GGG - chr3_3:80565970-80565989 Msa0476700:five_prime_UTR 35.0%
GGTAACGAGGGAAATGAAAT+GGG + chr3_3:80561406-80561425 None:intergenic 40.0%
! TGGTAACGAGGGAAATGAAA+TGG + chr3_3:80561407-80561426 None:intergenic 40.0%
! TCCAACTTGTCTCATGGTTT+TGG - chr3_3:80561586-80561605 Msa0476700:three_prime_UTR 40.0%
TCCAAAACCATGAGACAAGT+TGG + chr3_3:80561590-80561609 None:intergenic 40.0%
TCTAACTGGGAAATGGAGTT+AGG - chr3_3:80561846-80561865 Msa0476700:CDS 40.0%
! GAGTCATGATTTAGGGTCAA+AGG - chr3_3:80561932-80561951 Msa0476700:intron 40.0%
TAGAGCTTCATTGCTTGTAG+AGG - chr3_3:80562193-80562212 Msa0476700:intron 40.0%
CTAAACTCCGGAATATTAGG+AGG + chr3_3:80562370-80562389 None:intergenic 40.0%
TGATTGGGATCAAGAGGTTA+AGG + chr3_3:80562470-80562489 None:intergenic 40.0%
AGCTTAAATCCATCCATGTC+AGG + chr3_3:80562787-80562806 None:intergenic 40.0%
TGAACTTGTGGGACTTGAAA+TGG - chr3_3:80562810-80562829 Msa0476700:CDS 40.0%
AGATCCCCACTTACTTATGA+CGG + chr3_3:80562842-80562861 None:intergenic 40.0%
TGCATATGGTGATACAAAGC+TGG - chr3_3:80562990-80563009 Msa0476700:CDS 40.0%
! GATACAAAGCTGGTGATGAA+AGG - chr3_3:80563000-80563019 Msa0476700:CDS 40.0%
GTGATGAAAGGAATTTCCCA+TGG - chr3_3:80563012-80563031 Msa0476700:CDS 40.0%
AGGTTTCAGCAGATAATCAC+AGG + chr3_3:80563040-80563059 None:intergenic 40.0%
! TTTAGCTCCTCTAATCTCAC+AGG + chr3_3:80563060-80563079 None:intergenic 40.0%
GAAGAAGAAGTCTGATCCAA+AGG - chr3_3:80563104-80563123 Msa0476700:CDS 40.0%
! ATCTGAATTTTCTGCTCCTG+CGG + chr3_3:80563190-80563209 None:intergenic 40.0%
! AGAGAATGGTAATGACAACG+AGG - chr3_3:80563269-80563288 Msa0476700:CDS 40.0%
TAACAGCAGCAACAAACTTG+CGG + chr3_3:80563344-80563363 None:intergenic 40.0%
GTTGCTGCTGTTAATCAGTT+AGG - chr3_3:80563351-80563370 Msa0476700:CDS 40.0%
AAATATCACAAGGGAGAACG+TGG - chr3_3:80563698-80563717 Msa0476700:intron 40.0%
TGCAAACCAACAAGCTAGTA+TGG - chr3_3:80563855-80563874 Msa0476700:intron 40.0%
AAACCAACAAGCTAGTATGG+TGG - chr3_3:80563858-80563877 Msa0476700:intron 40.0%
TATTTGAGAATGGGTGGTTC+TGG - chr3_3:80563907-80563926 Msa0476700:intron 40.0%
! TTCAGATCCTTTTCACCTAG+TGG - chr3_3:80563949-80563968 Msa0476700:intron 40.0%
! TCAGATCCTTTTCACCTAGT+GGG - chr3_3:80563950-80563969 Msa0476700:intron 40.0%
!! ACACTCCAACTAGTCTTAAC+GGG - chr3_3:80563989-80564008 Msa0476700:intron 40.0%
TGATCAAACCCTATGGACAT+TGG + chr3_3:80564141-80564160 None:intergenic 40.0%
TTGCAAGTGATCAAACCCTA+TGG + chr3_3:80564148-80564167 None:intergenic 40.0%
TGATCACTTGCAAAACAGCA+AGG - chr3_3:80564155-80564174 Msa0476700:CDS 40.0%
GATCACTTGCAAAACAGCAA+GGG - chr3_3:80564156-80564175 Msa0476700:CDS 40.0%
TCCCATCCCAAATAAATTCC+CGG - chr3_3:80564224-80564243 Msa0476700:CDS 40.0%
! TCCGGGAATTTATTTGGGAT+GGG + chr3_3:80564228-80564247 None:intergenic 40.0%
ATCCGGGAATTTATTTGGGA+TGG + chr3_3:80564229-80564248 None:intergenic 40.0%
CGTTGATCCGGGAATTTATT+TGG + chr3_3:80564234-80564253 None:intergenic 40.0%
! TTGTTTGAGATACCGAGACT+TGG + chr3_3:80564288-80564307 None:intergenic 40.0%
AGTCTCGGTATCTCAAACAA+TGG - chr3_3:80564288-80564307 Msa0476700:CDS 40.0%
CTCAAACAATGGCTTGATGT+CGG - chr3_3:80564299-80564318 Msa0476700:CDS 40.0%
! TACCTCCGTGTTTTCTTTCA+GGG + chr3_3:80564332-80564351 None:intergenic 40.0%
! ATACCTCCGTGTTTTCTTTC+AGG + chr3_3:80564333-80564352 None:intergenic 40.0%
! GAAAGAAAACACGGAGGTAT+AGG - chr3_3:80564333-80564352 Msa0476700:CDS 40.0%
! AAACACGGAGGTATAGGAAT+AGG - chr3_3:80564339-80564358 Msa0476700:CDS 40.0%
! GGAGGTATAGGAATAGGATA+TGG - chr3_3:80564345-80564364 Msa0476700:CDS 40.0%
TCTTTCTCTATGCTGGATCA+AGG - chr3_3:80564408-80564427 Msa0476700:CDS 40.0%
TGTTCCTCCTTCAGATAACA+TGG - chr3_3:80564521-80564540 Msa0476700:intron 40.0%
GGTAAGTAGCATCCTGATTA+CGG + chr3_3:80564671-80564690 None:intergenic 40.0%
AACTCTCTTGCTCCAGTTAA+CGG - chr3_3:80564717-80564736 Msa0476700:CDS 40.0%
CCAGCATGCTTCATTTGTAT+GGG + chr3_3:80564804-80564823 None:intergenic 40.0%
TCCAGCATGCTTCATTTGTA+TGG + chr3_3:80564805-80564824 None:intergenic 40.0%
TGAGCTGCATTCAGTTAACT+CGG + chr3_3:80564832-80564851 None:intergenic 40.0%
!! TGCTGGCTTATGATATTAGC+TGG + chr3_3:80564867-80564886 None:intergenic 40.0%
TCTTGGTTCACTGGAATACT+TGG - chr3_3:80564902-80564921 Msa0476700:intron 40.0%
ATACTTGGCGAGTTCAATGA+TGG - chr3_3:80564917-80564936 Msa0476700:intron 40.0%
TACTTGGCGAGTTCAATGAT+GGG - chr3_3:80564918-80564937 Msa0476700:intron 40.0%
CTAATCAGTATGTGTGGTCA+AGG + chr3_3:80565067-80565086 None:intergenic 40.0%
CGAAAGTTACGGTGGTTAAT+TGG + chr3_3:80565288-80565307 None:intergenic 40.0%
ATACCATGTTCATGACATGC+AGG - chr3_3:80565507-80565526 Msa0476700:intron 40.0%
TATGCGATAATTACTCCGAC+GGG - chr3_3:80565566-80565585 Msa0476700:intron 40.0%
AAATAGCATGTGTCCATGAG+AGG + chr3_3:80565671-80565690 None:intergenic 40.0%
GAAAACTCCTAGGACAAAAC+TGG + chr3_3:80565696-80565715 None:intergenic 40.0%
! TGTCCTAGGAGTTTTCTTTG+TGG - chr3_3:80565700-80565719 Msa0476700:intron 40.0%
! GTCCTAGGAGTTTTCTTTGT+GGG - chr3_3:80565701-80565720 Msa0476700:intron 40.0%
ATCCCACAAAGAAAACTCCT+AGG + chr3_3:80565706-80565725 None:intergenic 40.0%
ACTTGACTCTAACTTGACTC+TGG + chr3_3:80565750-80565769 None:intergenic 40.0%
AATCTTTCGTTCTGACAGCA+GGG + chr3_3:80565957-80565976 None:intergenic 40.0%
TAATCTTTCGTTCTGACAGC+AGG + chr3_3:80565958-80565977 None:intergenic 40.0%
GAAAGATTAAACGTGCCTGA+AGG - chr3_3:80565969-80565988 Msa0476700:five_prime_UTR 40.0%
! ACAAGTTGGATCGTCGTCAA+CGG + chr3_3:80561576-80561595 None:intergenic 45.0%
CTCCGTAGATGTCAATACCA+CGG - chr3_3:80561617-80561636 Msa0476700:three_prime_UTR 45.0%
!! GACCGTGGTATTGACATCTA+CGG + chr3_3:80561622-80561641 None:intergenic 45.0%
GTCAATACCACGGTCAGATT+CGG - chr3_3:80561627-80561646 Msa0476700:three_prime_UTR 45.0%
TGTAGAGGTAGTACCGTAGT+AGG - chr3_3:80562208-80562227 Msa0476700:intron 45.0%
TTACCTCCCTGACTAAACTC+CGG + chr3_3:80562382-80562401 None:intergenic 45.0%
GTCAGGGAGGTAATTGAACT+CGG - chr3_3:80562389-80562408 Msa0476700:intron 45.0%
TCAGGGAGGTAATTGAACTC+GGG - chr3_3:80562390-80562409 Msa0476700:intron 45.0%
TCTCTCGAATGATTCCTCCT+AGG - chr3_3:80562438-80562457 Msa0476700:intron 45.0%
CTCTCGAATGATTCCTCCTA+GGG - chr3_3:80562439-80562458 Msa0476700:intron 45.0%
TCTCGAATGATTCCTCCTAG+GGG - chr3_3:80562440-80562459 Msa0476700:intron 45.0%
ACCTCTTGATCCCAATCACT+TGG - chr3_3:80562472-80562491 Msa0476700:intron 45.0%
ACCAAGTGATTGGGATCAAG+AGG + chr3_3:80562476-80562495 None:intergenic 45.0%
! TGTGCACATCACTGATTACC+AGG + chr3_3:80562762-80562781 None:intergenic 45.0%
ACCTTCCCGTCATAAGTAAG+TGG - chr3_3:80562833-80562852 Msa0476700:CDS 45.0%
CCTTCCCGTCATAAGTAAGT+GGG - chr3_3:80562834-80562853 Msa0476700:CDS 45.0%
CTTCCCGTCATAAGTAAGTG+GGG - chr3_3:80562835-80562854 Msa0476700:CDS 45.0%
GATCCCCACTTACTTATGAC+GGG + chr3_3:80562841-80562860 None:intergenic 45.0%
CAGATAATCACAGGCACCAT+GGG + chr3_3:80563031-80563050 None:intergenic 45.0%
GCTGAAACCTGTGAGATTAG+AGG - chr3_3:80563050-80563069 Msa0476700:CDS 45.0%
!! ACTACTTCTGATAGTGGCAG+TGG - chr3_3:80563156-80563175 Msa0476700:CDS 45.0%
TCAGGATGAAGACGAAGATG+AGG - chr3_3:80563242-80563261 Msa0476700:CDS 45.0%
AGATTGATCTGCACTCCCTA+AGG + chr3_3:80563887-80563906 None:intergenic 45.0%
AGGGAATGCCAATGTCCATA+GGG - chr3_3:80564130-80564149 Msa0476700:CDS 45.0%
GAACTAGAGGTGGCAAAACT+TGG + chr3_3:80564258-80564277 None:intergenic 45.0%
ACTTGGAGGATGAGAACTAG+AGG + chr3_3:80564271-80564290 None:intergenic 45.0%
AGTTCTCATCCTCCAAGTCT+CGG - chr3_3:80564273-80564292 Msa0476700:CDS 45.0%
! TTTGAGATACCGAGACTTGG+AGG + chr3_3:80564285-80564304 None:intergenic 45.0%
ACGCACCCTGAAAGAAAACA+CGG - chr3_3:80564324-80564343 Msa0476700:CDS 45.0%
TCTCTATGCTGGATCAAGGT+AGG - chr3_3:80564412-80564431 Msa0476700:CDS 45.0%
AAGGTAGGCACGGTGATAAT+TGG - chr3_3:80564427-80564446 Msa0476700:CDS 45.0%
GAAGCCATGTTATCTGAAGG+AGG + chr3_3:80564528-80564547 None:intergenic 45.0%
! ATTCCTTGGGAGTGCATATC+TGG + chr3_3:80564588-80564607 None:intergenic 45.0%
CCCATACAAATGAAGCATGC+TGG - chr3_3:80564801-80564820 Msa0476700:intron 45.0%
AAGACATACTCCAGTCAGCA+TGG - chr3_3:80565116-80565135 Msa0476700:intron 45.0%
AAGGACATCGAAAGTTACGG+TGG + chr3_3:80565296-80565315 None:intergenic 45.0%
ATGCGATAATTACTCCGACG+GGG - chr3_3:80565567-80565586 Msa0476700:intron 45.0%
ATCTTTCGTTCTGACAGCAG+GGG + chr3_3:80565956-80565975 None:intergenic 45.0%
! TTGGTAGCAACAATCCCTTC+AGG + chr3_3:80565987-80566006 None:intergenic 45.0%
!!! TAAATAAAAATGATTAATTT+TGG + chr3_3:80561427-80561446 None:intergenic 5.0%
CACGCATTCCGATGGGAAAA+CGG + chr3_3:80561547-80561566 None:intergenic 50.0%
CGACGATCCAACTTGTCTCA+TGG - chr3_3:80561580-80561599 Msa0476700:three_prime_UTR 50.0%
ACTAGATCCGAATCTGACCG+TGG + chr3_3:80561637-80561656 None:intergenic 50.0%
TGTTAATCCTCCTGCTCTCG+AGG - chr3_3:80562321-80562340 Msa0476700:intron 50.0%
GTTAATCCTCCTGCTCTCGA+GGG - chr3_3:80562322-80562341 Msa0476700:intron 50.0%
ATTCCGGAGTTTAGTCAGGG+AGG - chr3_3:80562376-80562395 Msa0476700:intron 50.0%
TTCCGCCTGTGAATCAAGCT+CGG - chr3_3:80562413-80562432 Msa0476700:intron 50.0%
AGAACCCGAGCTTGATTCAC+AGG + chr3_3:80562421-80562440 None:intergenic 50.0%
CTCGAATGATTCCTCCTAGG+GGG - chr3_3:80562441-80562460 Msa0476700:intron 50.0%
TCGAATGATTCCTCCTAGGG+GGG - chr3_3:80562442-80562461 Msa0476700:intron 50.0%
TGATGTGCACATGCCTGACA+TGG - chr3_3:80562771-80562790 Msa0476700:CDS 50.0%
! CCCACTTACTTATGACGGGA+AGG + chr3_3:80562837-80562856 None:intergenic 50.0%
GCAGATAATCACAGGCACCA+TGG + chr3_3:80563032-80563051 None:intergenic 50.0%
GAGGCTTCTTCTGAGCTGAT+GGG + chr3_3:80563296-80563315 None:intergenic 50.0%
CATCAGCTCAGAAGAAGCCT+CGG - chr3_3:80563295-80563314 Msa0476700:CDS 50.0%
ATCAGCTCAGAAGAAGCCTC+GGG - chr3_3:80563296-80563315 Msa0476700:CDS 50.0%
! AGAAGAAGCCTCGGGTTGTT+TGG - chr3_3:80563304-80563323 Msa0476700:CDS 50.0%
! CTGCCACCATACTAGCTTGT+TGG + chr3_3:80563864-80563883 None:intergenic 50.0%
CTAGTATGGTGGCAGCCTTA+GGG - chr3_3:80563869-80563888 Msa0476700:intron 50.0%
CCATGCCCGTTAAGACTAGT+TGG + chr3_3:80563997-80564016 None:intergenic 50.0%
!! CCAACTAGTCTTAACGGGCA+TGG - chr3_3:80563994-80564013 Msa0476700:intron 50.0%
! CGGGCATGGATTTTCTCCTT+CGG - chr3_3:80564008-80564027 Msa0476700:intron 50.0%
! GGGCATGGATTTTCTCCTTC+GGG - chr3_3:80564009-80564028 Msa0476700:intron 50.0%
! GGCATGGATTTTCTCCTTCG+GGG - chr3_3:80564010-80564029 Msa0476700:intron 50.0%
TAACGGGAGTTATGGCTGAC+TGG + chr3_3:80564095-80564114 None:intergenic 50.0%
CAGGGAATGCCAATGTCCAT+AGG - chr3_3:80564129-80564148 Msa0476700:CDS 50.0%
CAAAACTTGGCCGTTGATCC+GGG + chr3_3:80564245-80564264 None:intergenic 50.0%
GCAAAACTTGGCCGTTGATC+CGG + chr3_3:80564246-80564265 None:intergenic 50.0%
TGGAGGATGAGAACTAGAGG+TGG + chr3_3:80564268-80564287 None:intergenic 50.0%
CACCCTGAAAGAAAACACGG+AGG - chr3_3:80564327-80564346 Msa0476700:CDS 50.0%
ATGCTGGATCAAGGTAGGCA+CGG - chr3_3:80564417-80564436 Msa0476700:CDS 50.0%
ATATCTGGCAACGAACCACC+AGG + chr3_3:80564573-80564592 None:intergenic 50.0%
TTGCCAGATATGCACTCCCA+AGG - chr3_3:80564582-80564601 Msa0476700:intron 50.0%
CGGTCTTCCCATCCTTGAAA+TGG + chr3_3:80564651-80564670 None:intergenic 50.0%
AGGATGGGAAGACCGTAATC+AGG - chr3_3:80564656-80564675 Msa0476700:CDS 50.0%
GGAAAAACGGCACCGTTAAC+TGG + chr3_3:80564732-80564751 None:intergenic 50.0%
TGTCTGGCCTGGTGGAAAAA+CGG + chr3_3:80564745-80564764 None:intergenic 50.0%
AGGTGGAGCTAGTTGTTGTC+TGG + chr3_3:80564761-80564780 None:intergenic 50.0%
GACAACAACTAGCTCCACCT+TGG - chr3_3:80564761-80564780 Msa0476700:intron 50.0%
GCTCCTGCATGTCATGAACA+TGG + chr3_3:80565513-80565532 None:intergenic 50.0%
CTGTCACAAAGATACCCCGT+CGG + chr3_3:80565584-80565603 None:intergenic 50.0%
TAGCATGTGTCCATGAGAGG+AGG + chr3_3:80565668-80565687 None:intergenic 50.0%
! TCCGGTGACCGTTTTCCCAT+CGG - chr3_3:80561536-80561555 Msa0476700:three_prime_UTR 55.0%
TCCGATGGGAAAACGGTCAC+CGG + chr3_3:80561540-80561559 None:intergenic 55.0%
GCGAGAACACGCATTCCGAT+GGG + chr3_3:80561554-80561573 None:intergenic 55.0%
GGGGAGGCCTCCTAATATTC+CGG - chr3_3:80562360-80562379 Msa0476700:intron 55.0%
TCCGCCTGTGAATCAAGCTC+GGG - chr3_3:80562414-80562433 Msa0476700:intron 55.0%
ACCCGAGCTTGATTCACAGG+CGG + chr3_3:80562418-80562437 None:intergenic 55.0%
GTGCACATGCCTGACATGGA+TGG - chr3_3:80562775-80562794 Msa0476700:CDS 55.0%
CGAGGCTTCTTCTGAGCTGA+TGG + chr3_3:80563297-80563316 None:intergenic 55.0%
TCCACAGACCAAACAACCCG+AGG + chr3_3:80563315-80563334 None:intergenic 55.0%
GCTAGTATGGTGGCAGCCTT+AGG - chr3_3:80563868-80563887 Msa0476700:intron 55.0%
TCCTTCGGGGCTTCTTCAGT+TGG - chr3_3:80564023-80564042 Msa0476700:intron 55.0%
CCTTCGGGGCTTCTTCAGTT+GGG - chr3_3:80564024-80564043 Msa0476700:intron 55.0%
! TCAAGCGACGTGCCGTTATC+TGG - chr3_3:80564450-80564469 Msa0476700:intron 55.0%
GGCTTCTTTGCCCTTGCAAG+CGG - chr3_3:80564542-80564561 Msa0476700:intron 55.0%
GCTTCTTTGCCCTTGCAAGC+GGG - chr3_3:80564543-80564562 Msa0476700:intron 55.0%
CTTCTTTGCCCTTGCAAGCG+GGG - chr3_3:80564544-80564563 Msa0476700:intron 55.0%
!!! AACGGTGCCGTTTTTCCACC+AGG - chr3_3:80564735-80564754 Msa0476700:intron 55.0%
CTAGTTGTTGTCTGGCCTGG+TGG + chr3_3:80564753-80564772 None:intergenic 55.0%
GAGCTAGTTGTTGTCTGGCC+TGG + chr3_3:80564756-80564775 None:intergenic 55.0%
! GGCGAGTTCAATGATGGGAC+AGG - chr3_3:80564923-80564942 Msa0476700:intron 55.0%
! CGACGGGGTATCTTTGTGAC+AGG - chr3_3:80565582-80565601 Msa0476700:intron 55.0%
GGCGAGAACACGCATTCCGA+TGG + chr3_3:80561555-80561574 None:intergenic 60.0%
ATCCTCCTGCTCTCGAGGGA+AGG - chr3_3:80562326-80562345 Msa0476700:intron 60.0%
GAGGGAAGGACCCCTCTCAA+GGG - chr3_3:80562340-80562359 Msa0476700:intron 60.0%
AGGGAAGGACCCCTCTCAAG+GGG - chr3_3:80562341-80562360 Msa0476700:intron 60.0%
TAGGAGGCCTCCCCTTGAGA+GGG + chr3_3:80562354-80562373 None:intergenic 60.0%
TTAGGAGGCCTCCCCTTGAG+AGG + chr3_3:80562355-80562374 None:intergenic 60.0%
AGAGGTTAAGGAGCCCCCCT+AGG + chr3_3:80562458-80562477 None:intergenic 60.0%
!! GGCAGTGGACTAAGATCCGC+AGG - chr3_3:80563171-80563190 Msa0476700:CDS 60.0%
! GCCTCGGGTTGTTTGGTCTG+TGG - chr3_3:80563311-80563330 Msa0476700:CDS 60.0%
GAACGTGGCAAGCCATCTCC+AGG - chr3_3:80563713-80563732 Msa0476700:CDS 60.0%
CCCAACTGAAGAAGCCCCGA+AGG + chr3_3:80564027-80564046 None:intergenic 60.0%
CCAGGATACCCCGCTTGCAA+GGG + chr3_3:80564555-80564574 None:intergenic 60.0%
ACCAGGATACCCCGCTTGCA+AGG + chr3_3:80564556-80564575 None:intergenic 60.0%
! TTGCAAGCGGGGTATCCTGG+TGG - chr3_3:80564555-80564574 Msa0476700:intron 60.0%
GTCCTTCCCTCGAGAGCAGG+AGG + chr3_3:80562331-80562350 None:intergenic 65.0%
CGAGGGAAGGACCCCTCTCA+AGG - chr3_3:80562339-80562358 Msa0476700:intron 65.0%
GAAGGACCCCTCTCAAGGGG+AGG - chr3_3:80562344-80562363 Msa0476700:intron 65.0%
AGGAGGCCTCCCCTTGAGAG+GGG + chr3_3:80562353-80562372 None:intergenic 65.0%
GGTTAAGGAGCCCCCCTAGG+AGG + chr3_3:80562455-80562474 None:intergenic 65.0%
! CCCTTGCAAGCGGGGTATCC+TGG - chr3_3:80564552-80564571 Msa0476700:intron 65.0%
GGGGTCCTTCCCTCGAGAGC+AGG + chr3_3:80562334-80562353 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 80561388 80566049 80561388 ID=Msa0476700;Name=Msa0476700
chr3_3 mRNA 80561388 80566049 80561388 ID=Msa0476700-mRNA-1;Parent=Msa0476700;Name=Msa0476700-mRNA-1;_AED=0.05;_eAED=0.05;_QI=139|1|1|1|1|1|6|449|645
chr3_3 exon 80561388 80561908 80561388 ID=Msa0476700-mRNA-1:exon:22106;Parent=Msa0476700-mRNA-1
chr3_3 exon 80562493 80563617 80562493 ID=Msa0476700-mRNA-1:exon:22105;Parent=Msa0476700-mRNA-1
chr3_3 exon 80563703 80563779 80563703 ID=Msa0476700-mRNA-1:exon:22104;Parent=Msa0476700-mRNA-1
chr3_3 exon 80564056 80564454 80564056 ID=Msa0476700-mRNA-1:exon:22103;Parent=Msa0476700-mRNA-1
chr3_3 exon 80564590 80564742 80564590 ID=Msa0476700-mRNA-1:exon:22102;Parent=Msa0476700-mRNA-1
chr3_3 exon 80565799 80566049 80565799 ID=Msa0476700-mRNA-1:exon:22101;Parent=Msa0476700-mRNA-1
chr3_3 five_prime_UTR 80565911 80566049 80565911 ID=Msa0476700-mRNA-1:five_prime_utr;Parent=Msa0476700-mRNA-1
chr3_3 CDS 80565799 80565910 80565799 ID=Msa0476700-mRNA-1:cds;Parent=Msa0476700-mRNA-1
chr3_3 CDS 80564590 80564742 80564590 ID=Msa0476700-mRNA-1:cds;Parent=Msa0476700-mRNA-1
chr3_3 CDS 80564056 80564454 80564056 ID=Msa0476700-mRNA-1:cds;Parent=Msa0476700-mRNA-1
chr3_3 CDS 80563703 80563779 80563703 ID=Msa0476700-mRNA-1:cds;Parent=Msa0476700-mRNA-1
chr3_3 CDS 80562493 80563617 80562493 ID=Msa0476700-mRNA-1:cds;Parent=Msa0476700-mRNA-1
chr3_3 CDS 80561837 80561908 80561837 ID=Msa0476700-mRNA-1:cds;Parent=Msa0476700-mRNA-1
chr3_3 three_prime_UTR 80561388 80561836 80561388 ID=Msa0476700-mRNA-1:three_prime_utr;Parent=Msa0476700-mRNA-1
Gene Sequence

>Msa0476700

ATGGATGATTCCGGTGACCGTTTTCCCATCGGAATGCGTGTTCTCGCCGTTGACGACGATCCAACTTGTCTCATGGTTTTGGAAACTCTTCTCCGTAGATGTCAATACCACGTAACCACAACTAGTCAAGCAATAACAGCGTTGACCATGTTGAGAGAAAACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCTGACATGGATGGATTTAAGCTGCTTGAACTTGTGGGACTTGAAATGGACCTTCCCGTCATAATGTTGTCTGCATATGGTGATACAAAGCTGGTGATGAAAGGAATTTCCCATGGTGCCTGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGCTAAAGAACATTTGGCAGCATGTAATTAGGAAGAAGAAGTCTGATCCAAAGGAGAAAAACAAAACCAGTAAACCAGACAAAACTACTTCTGATAGTGGCAGTGGACTAAGATCCGCAGGAGCAGAAAATTCAGATGAAAATGGAAAGCTGACTAAGAAAAGAAAGGATCAGGATGAAGACGAAGATGAGGATAAAGAGAATGGTAATGACAACGAGGACCCATCAGCTCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTGCCCAAAAAAATTCTTGATATGATGAATGTCGAAAATATCACAAGGGAGAACGTGGCAAGCCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTTGCAAACCAACAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCAGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAATAATGCTTTCAGATCCTTTTCACCTAGTGGGATAATTGGTAATCTGAACACTCCAACTAGTCTTAACGGGCATGGATTTTCTCCTTCGGGGCTTCTTCAGTTGGGCCAATCACGTAATTTAAACAATTCTTCCAATGATCAACTTAAATTCCAGTCAGCCATAACTCCCGTTAATCAGAATATTCTTCAGGGAATGCCAATGTCCATAGGGTTTGATCACTTGCAAAACAGCAAGGGTGTTATCTCTGTTCAAAACCTGAATACTGATGTGAAAACAACTTTTCCCATCCCAAATAAATTCCCGGATCAACGGCCAAGTTTTGCCACCTCTAGTTCTCATCCTCCAAGTCTCGGTATCTCAAACAATGGCTTGATGTCGGATACGCACCCTGAAAGAAAACACGGAGGTATAGGAATAGGATATGGAAGTTCATCTTCTTCAGTAGCCTCTCAACATTCAGAATTTTCTTTCTCTATGCTGGATCAAGGTAGGCACGGTGATAATTGGTCAAGCGACGTGCCGTTATCTGGAATCCAAACAAATTCTTTCTCTTCAAGTGAATGTTTTAGACAGACAGCTGTTCCTCCTTCAGATAACATGGCTTCTTTGCCCTTGCAAGCGGGGTATCCTGGTGGTTCGTTGCCAGATATGCACTCCCAAGGAATGATTTTTACTAATTCACCTGAGTATATAAACGGTAATTTGCCATTTCAAGGATGGGAAGACCGTAATCAGGATGCTACTTACCACTCAAATGTTACTTGTGGATCAATGAACTCTCTTGCTCCAGTTAACGGTGCCGTTTTTCCACCAGGCCAGACAACAACTAGCTCCACCTTGGATACTAAATTTTTTAATCCCATACAAATGAAGCATGCTGGATTTGCCGAGTTAACTGAATGCAGCTCATCAAGACAATCTCCAGCTAATATCATAAGCCAGCAGAAGTTTTCTAATAATCTTGGTTCACTGGAATACTTGGCGAGTTCAATGATGGGACAGGAGCAAGATAAGATGAAATTATTGGGTGGAGACTTCATATGCGATAATTACTCCGACGGGGTATCTTTGTGA
Protein sequence

>Msa0476700

MDDSGDRFPIGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAITALTMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDPKEKNKTSKPDKTTSDSGSGLRSAGAENSDENGKLTKKRKDQDEDEDEDKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHNNAFRSFSPSGIIGNLNTPTSLNGHGFSPSGLLQLGQSRNLNNSSNDQLKFQSAITPVNQNILQGMPMSIGFDHLQNSKGVISVQNLNTDVKTTFPIPNKFPDQRPSFATSSSHPPSLGISNNGLMSDTHPERKHGGIGIGYGSSSSSVASQHSEFSFSMLDQGRHGDNWSSDVPLSGIQTNSFSSSECFRQTAVPPSDNMASLPLQAGYPGGSLPDMHSQGMIFTNSPEYINGNLPFQGWEDRNQDATYHSNVTCGSMNSLAPVNGAVFPPGQTTTSSTLDTKFFNPIQMKHAGFAELTECSSSRQSPANIISQQKFSNNLGSLEYLASSMMGQEQDKMKLLGGDFICDNYSDGVSL*