AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0432830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432830 MtrunA17_Chr3g0138401 95.913 416 14 2 1 413 1 416 0.0 800
Msa0432830 MtrunA17_Chr4g0005121 91.429 70 5 1 1 70 1 69 5.44e-30 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432830 AT4G32570.1 39.409 406 150 15 26 408 27 359 2.67e-51 176
Msa0432830 AT4G32570.2 40.717 307 97 9 26 315 27 265 9.30e-50 172

Find 148 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTCTGATTCCTCATTTA+TGG 0.101310 3_2:-85065547 Msa0432830:CDS
CTAAGATTGATGCGAATAAA+TGG 0.197424 3_2:-85065224 Msa0432830:CDS
TCTTATTTCTGATTATTTAT+TGG 0.205262 3_2:-85062032 Msa0432830:three_prime_UTR
ATCAGTAGCAGCGGTGTTTA+TGG 0.205391 3_2:+85065011 None:intergenic
CTTATTTCTGATTATTTATT+GGG 0.217535 3_2:-85062031 Msa0432830:three_prime_UTR
TCCACCTCCGAAACCGTTTC+TGG 0.230412 3_2:-85066243 Msa0432830:intron
ATTATATTAGTTAGAGGTTT+TGG 0.247280 3_2:+85064952 None:intergenic
AATTCTGATTCCTCATTTAT+GGG 0.297898 3_2:-85065546 Msa0432830:CDS
GTTTATGGAACTTAAAATTC+CGG 0.306770 3_2:+85065026 None:intergenic
TGTAATCAATTCAATTCAAT+TGG 0.308257 3_2:+85066707 None:intergenic
TCTAAACCAGTCACCGTATC+AGG 0.314944 3_2:-85061852 Msa0432830:three_prime_UTR
ACCAGCTTTGCAGTAGATTT+CGG 0.332699 3_2:+85062833 None:intergenic
CATAGTGGAGAAAATGAAAC+AGG 0.343306 3_2:-85062794 Msa0432830:CDS
GATTCTATTATATTAGTTAG+AGG 0.379814 3_2:+85064946 None:intergenic
GACCATTTGAAAGGCATCTC+TGG 0.380703 3_2:+85065518 None:intergenic
TCTCTCCTCCAGACGCATTT+CGG 0.381595 3_2:+85065340 None:intergenic
GATGTTATAATGGCTTTGGC+TGG 0.382975 3_2:-85062890 Msa0432830:CDS
CAGAAATAAGAGAAAGCTCT+TGG 0.383667 3_2:+85062044 None:intergenic
TTCCACCGACGTTAGGTTAC+CGG 0.385652 3_2:-85066313 Msa0432830:CDS
TTTATGGAACTTAAAATTCC+GGG 0.391734 3_2:+85065027 None:intergenic
CTCGAGGGAGTTCCATTCTA+TGG 0.400380 3_2:-85065630 Msa0432830:CDS
AACTAACTTCAAACAAGCTT+AGG 0.400478 3_2:-85065122 Msa0432830:CDS
TGCTAAAGATACTAGAAATC+CGG 0.405348 3_2:-85062162 Msa0432830:CDS
GGAGAAAGGGCCACGAGCAC+CGG 0.406027 3_2:+85066266 None:intergenic
GTAATCAATTCAATTCAATT+GGG 0.412543 3_2:+85066708 None:intergenic
TAAGCTTGTTTGAAGTTAGT+TGG 0.412879 3_2:+85065124 None:intergenic
CATGGGAAGTTGTCTGCTAC+TGG 0.416162 3_2:-85062737 Msa0432830:CDS
GCCACGAGCACCGGCGGAGG+AGG 0.420220 3_2:+85066275 None:intergenic
GTGCTTACCAGAAACGGTTT+CGG 0.424015 3_2:+85066236 None:intergenic
CGCGGAGGATGCTGCATGGA+AGG 0.427118 3_2:+85065174 None:intergenic
AGCTATGCAGCAGAGTGAAA+TGG 0.429562 3_2:-85066456 Msa0432830:five_prime_UTR
ATCTGGCGGCTGGCAGGTGT+TGG 0.436258 3_2:+85064779 None:intergenic
CTGGGTCAAATGGTGGATCT+TGG 0.437897 3_2:-85062871 Msa0432830:CDS
GGCAGATGTTATAATGGCTT+TGG 0.438099 3_2:-85062894 Msa0432830:CDS
TGATGATGTCCACCAACATA+AGG 0.439728 3_2:-85064723 Msa0432830:intron
GAAGTTAGTTGGTGTGCAAA+AGG 0.439875 3_2:+85065135 None:intergenic
CAGGTCCTCCGAAATGCGTC+TGG 0.445569 3_2:-85065348 Msa0432830:CDS
TCACTTCTTGGGCCATAGAA+TGG 0.448253 3_2:+85065618 None:intergenic
CGCATCAATCTTAGTGTTGG+CGG 0.457246 3_2:+85065233 None:intergenic
TCAAAACTCACATTTGATGA+AGG 0.458213 3_2:-85065484 Msa0432830:intron
GGAGTAGATACACGGTCAAC+AGG 0.460556 3_2:+85062692 None:intergenic
ATAGTCATCTGGCGGCTGGC+AGG 0.466446 3_2:+85064773 None:intergenic
TATCAATTTGGTAGAAAAGC+AGG 0.466579 3_2:-85065664 Msa0432830:intron
ACCAGAAACGGTTTCGGAGG+TGG 0.466600 3_2:+85066242 None:intergenic
GCATTCCCACAAGAGCTTCA+TGG 0.467087 3_2:-85062755 Msa0432830:CDS
ATGAGAAAATTTGACAAAAG+AGG 0.468526 3_2:+85062002 None:intergenic
TATGCAGGCAGATGTTATAA+TGG 0.469314 3_2:-85062900 Msa0432830:intron
CATTCCCACAAGAGCTTCAT+GGG 0.469855 3_2:-85062754 Msa0432830:CDS
CTCCAGAGATGCCTTTCAAA+TGG 0.470651 3_2:-85065520 Msa0432830:CDS
AAGCTTAGGGATACCATTGC+CGG 0.471593 3_2:-85065108 Msa0432830:CDS
TAAGATTGATGCGAATAAAT+GGG 0.473687 3_2:-85065223 Msa0432830:CDS
ACCGAAATCTACTGCAAAGC+TGG 0.475875 3_2:-85062834 Msa0432830:CDS
GTTTCGGAGGTGGAGGAGAA+AGG 0.476240 3_2:+85066252 None:intergenic
GACCGTGTATCTACTCCAAC+CGG 0.477444 3_2:-85062686 Msa0432830:intron
AGGGCCACGAGCACCGGCGG+AGG 0.478100 3_2:+85066272 None:intergenic
ATGGCTTTGGCTGGGTCAAA+TGG 0.478398 3_2:-85062881 Msa0432830:CDS
CTGATACTTCCACCGACGTT+AGG 0.478726 3_2:-85066320 Msa0432830:CDS
GCTATGCAGCAGAGTGAAAT+GGG 0.481963 3_2:-85066455 Msa0432830:five_prime_UTR
CTGGAGGAGAGAGATCTAGA+AGG 0.484867 3_2:-85065329 Msa0432830:CDS
GCCTCCTCCGCCGGTGCTCG+TGG 0.487582 3_2:-85066276 Msa0432830:CDS
ATCAATGGCGGTGCTGAGAA+TGG 0.489429 3_2:-85066430 Msa0432830:exon
GGATCTGCTGCTTGAACCGC+CGG 0.490647 3_2:+85062143 None:intergenic
TCAGCATCAGCCTCCTCCGC+CGG 0.490900 3_2:-85066285 Msa0432830:CDS
AGAAATAAGAGAAAGCTCTT+GGG 0.490918 3_2:+85062045 None:intergenic
GCTGATGAAGGATCTAGAAC+TGG 0.491143 3_2:-85065060 Msa0432830:CDS
AACTTCCCATGAAGCTCTTG+TGG 0.491396 3_2:+85062749 None:intergenic
CTCCATAAAAGATAGTCATC+TGG 0.496051 3_2:+85064762 None:intergenic
ACTAACTTCAAACAAGCTTA+GGG 0.496585 3_2:-85065121 Msa0432830:CDS
GAAAATCATGGAGGAAGTGT+TGG 0.496873 3_2:+85066358 None:intergenic
TTTCGGAGGTGGAGGAGAAA+GGG 0.497327 3_2:+85066253 None:intergenic
GAGATAAGTAACAGACTAGT+GGG 0.497646 3_2:-85065582 Msa0432830:CDS
ACTTCCCATGAAGCTCTTGT+GGG 0.498210 3_2:+85062750 None:intergenic
TTAATAGTGCTTACCAGAAA+CGG 0.500267 3_2:+85066230 None:intergenic
ATTCGCATCAATCTTAGTGT+TGG 0.504337 3_2:+85065230 None:intergenic
GCAGGCTGAGAGATAAATGA+AGG 0.506389 3_2:+85065084 None:intergenic
AATGACGACGAAGTGTTACT+TGG 0.506870 3_2:-85065303 Msa0432830:CDS
AGAAGCTGCTTGACCTGATA+CGG 0.507457 3_2:+85061839 None:intergenic
AGTAACACTTCGTCGTCATT+AGG 0.511001 3_2:+85065306 None:intergenic
GAAAGGGCCACGAGCACCGG+CGG 0.511791 3_2:+85066269 None:intergenic
AAAATCATGGAGGAAGTGTT+GGG 0.513221 3_2:+85066359 None:intergenic
GGATCTAGAACTGGAATCAA+AGG 0.514477 3_2:-85065051 Msa0432830:CDS
GAGGCTGATGCTGATGCCTC+CGG 0.517085 3_2:+85066294 None:intergenic
TCTCAGCCTGCCGCTGATGA+AGG 0.519106 3_2:-85065072 Msa0432830:CDS
GCATCAATCTTAGTGTTGGC+GGG 0.522950 3_2:+85065234 None:intergenic
CTAGATCCTTCATCAGCGGC+AGG 0.525101 3_2:+85065066 None:intergenic
CGATCTATTCTCATGAATGC+TGG 0.527762 3_2:-85065198 Msa0432830:CDS
AAGAGTAGGATGATTGTGTA+AGG 0.529874 3_2:-85061938 Msa0432830:three_prime_UTR
GCTTGACCTGATACGGTGAC+TGG 0.533300 3_2:+85061846 None:intergenic
GGCAGTTCTAGCCGTGCCGT+TGG 0.541164 3_2:-85062716 Msa0432830:CDS
ATGTTATAATGGCTTTGGCT+GGG 0.543215 3_2:-85062889 Msa0432830:CDS
AATATCTGAGAACTAGAAGA+TGG 0.544323 3_2:+85065264 None:intergenic
AAAGATAGTCATCTGGCGGC+TGG 0.544851 3_2:+85064769 None:intergenic
GCATTGAACAGCAGTCAACA+TGG 0.551557 3_2:-85064803 Msa0432830:intron
CTGAGAGATAAATGAAGGGC+CGG 0.554107 3_2:+85065089 None:intergenic
GCTTCATGCCGAGAAAATCA+TGG 0.554318 3_2:+85066346 None:intergenic
GATAAATGAAGGGCCGGCAA+TGG 0.555598 3_2:+85065095 None:intergenic
ATTTCATCTGTGGTGTTGCT+CGG 0.555835 3_2:-85064985 Msa0432830:CDS
GCGGAGGATGCTGCATGGAA+GGG 0.560490 3_2:+85065175 None:intergenic
ATAGTTAGAATCAGAACGAT+AGG 0.566772 3_2:-85061778 Msa0432830:three_prime_UTR
AGAACTGGAATCAAAGGCCC+CGG 0.567203 3_2:-85065045 Msa0432830:CDS
TAATCAATTCAATTCAATTG+GGG 0.572167 3_2:+85066709 None:intergenic
AGAGTGAAATGGGTAATCAA+TGG 0.572299 3_2:-85066445 Msa0432830:exon
AGAAACGGTTTCGGAGGTGG+AGG 0.574883 3_2:+85066245 None:intergenic
AATGATAGTAACTTGCATAG+TGG 0.579416 3_2:-85062809 Msa0432830:CDS
TCTGGAGGAACCCATAAATG+AGG 0.581916 3_2:+85065536 None:intergenic
TCCACGCGGAGGATGCTGCA+TGG 0.586678 3_2:+85065170 None:intergenic
GAGGTCAGACCTTATGTTGG+TGG 0.592305 3_2:+85064714 None:intergenic
GCTTTGGCTGGGTCAAATGG+TGG 0.593671 3_2:-85062878 Msa0432830:CDS
GGTCAACAGGTCCAACGGCA+CGG 0.599017 3_2:+85062705 None:intergenic
GGAATCAGGGACCATTTGAA+AGG 0.601761 3_2:+85065509 None:intergenic
TACACGGTCAACAGGTCCAA+CGG 0.603243 3_2:+85062700 None:intergenic
CTCCTCCAGACGCATTTCGG+AGG 0.605747 3_2:+85065343 None:intergenic
CCGGTTGTAGGGGTACATCA+AGG 0.607519 3_2:-85062194 Msa0432830:intron
AACGTCGGTGGAAGTATCAG+TGG 0.609086 3_2:+85066323 None:intergenic
GTCCTCCGAAATGCGTCTGG+AGG 0.623376 3_2:-85065345 Msa0432830:CDS
ATTATGTGGGAAACAAGAGT+AGG 0.623513 3_2:-85061952 Msa0432830:three_prime_UTR
TGAGATAAGTAACAGACTAG+TGG 0.631355 3_2:-85065583 Msa0432830:CDS
CTTACCAGAAACGGTTTCGG+AGG 0.633124 3_2:+85066239 None:intergenic
ATGCAGCATCCTCCGCGTGG+AGG 0.635328 3_2:-85065168 Msa0432830:CDS
TACTGATAAAATTTCATCTG+TGG 0.635799 3_2:-85064995 Msa0432830:CDS
CATTTGAAAGGCATCTCTGG+AGG 0.646720 3_2:+85065521 None:intergenic
CACCGACGTTAGGTTACCGG+AGG 0.647418 3_2:-85066310 Msa0432830:CDS
CAGGTATCGAATCATCTCGA+GGG 0.650968 3_2:-85065645 Msa0432830:CDS
TACGAGGTCAGACCTTATGT+TGG 0.651133 3_2:+85064711 None:intergenic
AGTTCTAGATCCTTCATCAG+CGG 0.651396 3_2:+85065062 None:intergenic
CATTGAACAGCAGTCAACAT+GGG 0.652838 3_2:-85064802 Msa0432830:intron
GTAAGAGGAAAAGCTGACAA+AGG 0.654301 3_2:-85066733 None:intergenic
CTCCGGTAACCTAACGTCGG+TGG 0.654776 3_2:+85066311 None:intergenic
ACGTCGGTGGAAGTATCAGT+GGG 0.655076 3_2:+85066324 None:intergenic
GCAGGTATCGAATCATCTCG+AGG 0.661921 3_2:-85065646 Msa0432830:CDS
TTATGGAACTTAAAATTCCG+GGG 0.662736 3_2:+85065028 None:intergenic
TCAATCTTAGTGTTGGCGGG+AGG 0.664926 3_2:+85065237 None:intergenic
CATAAAAGATAGTCATCTGG+CGG 0.666315 3_2:+85064765 None:intergenic
GTTGTTAGAAAATGTAGTTG+TGG 0.667971 3_2:+85066569 None:intergenic
TCCATGCAGCATCCTCCGCG+TGG 0.673722 3_2:-85065171 Msa0432830:CDS
CAGGCTGAGAGATAAATGAA+GGG 0.676282 3_2:+85065085 None:intergenic
GTCAACTGTCCTCCACGCGG+AGG 0.679890 3_2:+85065159 None:intergenic
TCATCTGTGGTGTTGCTCGG+TGG 0.681028 3_2:-85064982 Msa0432830:CDS
AACAGGGTTAGTGAGTAATG+TGG 0.689431 3_2:-85062777 Msa0432830:CDS
GTGAAATGGGTAATCAATGG+CGG 0.690764 3_2:-85066442 Msa0432830:exon
TACCGGTTGGAGTAGATACA+CGG 0.691538 3_2:+85062684 None:intergenic
TGCCTCCGGTAACCTAACGT+CGG 0.705158 3_2:+85066308 None:intergenic
ATAAGATAGATTTACCTTGG+GGG 0.712059 3_2:+85064916 None:intergenic
TAAAGATACTAGAAATCCGG+CGG 0.716386 3_2:-85062159 Msa0432830:CDS
ATAGTGGAGAAAATGAAACA+GGG 0.722474 3_2:-85062793 Msa0432830:CDS
AGATAAGTAACAGACTAGTG+GGG 0.741446 3_2:-85065581 Msa0432830:CDS
GGAGTCAACTGTCCTCCACG+CGG 0.758189 3_2:+85065156 None:intergenic
TCATGCCGAGAAAATCATGG+AGG 0.774525 3_2:+85066349 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAAAAAAAAAATTG+AGG + chr3_2:85062381-85062400 None:intergenic 10.0%
!!! ATATAATGATATGAATTTTT+AGG - chr3_2:85062639-85062658 Msa0432830:intron 10.0%
!! ATCTATGAATTTAAAAAATT+CGG - chr3_2:85063832-85063851 Msa0432830:intron 10.0%
!!! CTTTTTCTATTAAATATTAT+AGG + chr3_2:85064039-85064058 None:intergenic 10.0%
!!! AAATGATTTTAATGAAAAAT+TGG + chr3_2:85065343-85065362 None:intergenic 10.0%
!!! ATTTTTCATTAAAATCATTT+AGG - chr3_2:85065343-85065362 Msa0432830:CDS 10.0%
!!! TTTTTCATTAAAATCATTTA+GGG - chr3_2:85065344-85065363 Msa0432830:CDS 10.0%
!! AATAAAAAAAATCAAACAAG+GGG + chr3_2:85062288-85062307 None:intergenic 15.0%
!! CAATAAAAAAAATCAAACAA+GGG + chr3_2:85062289-85062308 None:intergenic 15.0%
!! TCAATAAAAAAAATCAAACA+AGG + chr3_2:85062290-85062309 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGTGTCTA+TGG - chr3_2:85062387-85062406 Msa0432830:intron 15.0%
!!! TTTTTTATACTGAATGTATT+TGG - chr3_2:85064172-85064191 Msa0432830:intron 15.0%
!!! AAATTCTCTAAAAAAATGTT+TGG - chr3_2:85064333-85064352 Msa0432830:intron 15.0%
!! TACATGTTAAAAAATCTATT+GGG + chr3_2:85064956-85064975 None:intergenic 15.0%
!! ATACATGTTAAAAAATCTAT+TGG + chr3_2:85064957-85064976 None:intergenic 15.0%
!! AAAGATCAAAGAAAATAAAT+AGG + chr3_2:85065392-85065411 None:intergenic 15.0%
!!! CTGTTTAATTTTTTATTATC+CGG - chr3_2:85066247-85066266 Msa0432830:CDS 15.0%
!!! TTTTTATGTTCATATTCAAT+GGG - chr3_2:85066389-85066408 Msa0432830:CDS 15.0%
!!! TCTTATTTCTGATTATTTAT+TGG - chr3_2:85066428-85066447 Msa0432830:CDS 15.0%
!!! CTTATTTCTGATTATTTATT+GGG - chr3_2:85066429-85066448 Msa0432830:CDS 15.0%
!! TTGAAAAAAAAAGATTATGT+GGG - chr3_2:85066495-85066514 Msa0432830:five_prime_UTR 15.0%
!!! GCAATATAAAATGTTTTTTA+CGG + chr3_2:85066584-85066603 None:intergenic 15.0%
!!! AGAATGAATATAACAATTTT+TGG - chr3_2:85066707-85066726 Msa0432830:five_prime_UTR 15.0%
!!! ACAATTTTTGGTTTAAAAAA+TGG - chr3_2:85066719-85066738 Msa0432830:five_prime_UTR 15.0%
!! TAATCAATTCAATTCAATTG+GGG + chr3_2:85061754-85061773 None:intergenic 20.0%
!! GTAATCAATTCAATTCAATT+GGG + chr3_2:85061755-85061774 None:intergenic 20.0%
!! TGTAATCAATTCAATTCAAT+TGG + chr3_2:85061756-85061775 None:intergenic 20.0%
!! ATAAAAAAAATCAAACAAGG+GGG + chr3_2:85062287-85062306 None:intergenic 20.0%
!!! CTTTATTTTGATTTGTAGTA+TGG - chr3_2:85062483-85062502 Msa0432830:intron 20.0%
!!! AAAGTTTTGTGTTCAAAAAA+TGG + chr3_2:85062587-85062606 None:intergenic 20.0%
!!! GTTTCTATGTTTTCTTTAAA+TGG - chr3_2:85062754-85062773 Msa0432830:CDS 20.0%
!!! ATTATATTAGTTAGAGGTTT+TGG + chr3_2:85063511-85063530 None:intergenic 20.0%
!! GATTCTATTATATTAGTTAG+AGG + chr3_2:85063517-85063536 None:intergenic 20.0%
!! ATATAAGATAGATTTACCTT+GGG + chr3_2:85063549-85063568 None:intergenic 20.0%
!! TATATAAGATAGATTTACCT+TGG + chr3_2:85063550-85063569 None:intergenic 20.0%
!! AGTGAAAATAAATAGAATCA+AGG + chr3_2:85063590-85063609 None:intergenic 20.0%
!!! TTCTTCATCTTATTTTTTCT+AGG - chr3_2:85064256-85064275 Msa0432830:intron 20.0%
!! AAATACTTATACAAATGACT+AGG + chr3_2:85064770-85064789 None:intergenic 20.0%
!! TAGTCATTTGTATAAGTATT+TGG - chr3_2:85064769-85064788 Msa0432830:CDS 20.0%
!! TAGACTTGATGTATAAATAT+TGG - chr3_2:85065189-85065208 Msa0432830:CDS 20.0%
!! TTCTAAATTCATCAGAATAT+TGG - chr3_2:85066105-85066124 Msa0432830:intron 20.0%
!!! GTTTTTATGTTCATATTCAA+TGG - chr3_2:85066388-85066407 Msa0432830:CDS 20.0%
!!! CACATAATCTTTTTTTTTCA+AGG + chr3_2:85066496-85066515 None:intergenic 20.0%
!! CTTGAAAAAAAAAGATTATG+TGG - chr3_2:85066494-85066513 Msa0432830:five_prime_UTR 20.0%
!!! TTTTTTTGTGTCTATGGATT+TGG - chr3_2:85062393-85062412 Msa0432830:intron 25.0%
!! CAAATTTATGGTCATGATTT+TGG - chr3_2:85062459-85062478 Msa0432830:intron 25.0%
! GATTTGATTATTTGTTTCCA+TGG - chr3_2:85062511-85062530 Msa0432830:intron 25.0%
! CTCACTTTAAATTATTTCCA+TGG + chr3_2:85062531-85062550 None:intergenic 25.0%
!! TTGTCTGATTTTTCTTTTCT+TGG - chr3_2:85062676-85062695 Msa0432830:intron 25.0%
!! TTTTCTACCAAATTGATAAG+GGG + chr3_2:85062794-85062813 None:intergenic 25.0%
!! CTTTTCTACCAAATTGATAA+GGG + chr3_2:85062795-85062814 None:intergenic 25.0%
! TAATTCTGATTCCTCATTTA+TGG - chr3_2:85062913-85062932 Msa0432830:intron 25.0%
! AATTCTGATTCCTCATTTAT+GGG - chr3_2:85062914-85062933 Msa0432830:intron 25.0%
!!! CAAAAGTGTTTTTCTTCTTT+TGG + chr3_2:85063049-85063068 None:intergenic 25.0%
! TAAGATTGATGCGAATAAAT+GGG - chr3_2:85063237-85063256 Msa0432830:intron 25.0%
! TTTATGGAACTTAAAATTCC+GGG + chr3_2:85063436-85063455 None:intergenic 25.0%
! GTTTATGGAACTTAAAATTC+CGG + chr3_2:85063437-85063456 None:intergenic 25.0%
! TACTGATAAAATTTCATCTG+TGG - chr3_2:85063465-85063484 Msa0432830:intron 25.0%
! TATAAGATAGATTTACCTTG+GGG + chr3_2:85063548-85063567 None:intergenic 25.0%
! TTACTGCATTTAGTGAAATT+AGG - chr3_2:85063793-85063812 Msa0432830:intron 25.0%
! CATAGATACAAACTAATTTC+AGG + chr3_2:85063819-85063838 None:intergenic 25.0%
! CAGTTAAATTTAAACTCATC+AGG - chr3_2:85063901-85063920 Msa0432830:intron 25.0%
! AGCTTAAGCAAATGTATTAT+TGG + chr3_2:85064074-85064093 None:intergenic 25.0%
! TAATACATTTGCTTAAGCTT+TGG - chr3_2:85064075-85064094 Msa0432830:intron 25.0%
! AATACATTTGCTTAAGCTTT+GGG - chr3_2:85064076-85064095 Msa0432830:intron 25.0%
! TATTTGGATGATAGTTTCTA+TGG - chr3_2:85064188-85064207 Msa0432830:intron 25.0%
! TAGTATATAAAGTCAGCTTA+GGG - chr3_2:85064229-85064248 Msa0432830:intron 25.0%
! GACTTAAAAATTAACAGAGT+TGG - chr3_2:85064494-85064513 Msa0432830:intron 25.0%
!! CATTGCATTTAAGTTACATT+TGG - chr3_2:85064717-85064736 Msa0432830:intron 25.0%
! ATAAGCTGAAAACAACTTAT+AGG + chr3_2:85064823-85064842 None:intergenic 25.0%
! GAATATTCTGATTTCTAAGT+GGG - chr3_2:85064999-85065018 Msa0432830:CDS 25.0%
! AATATTCTGATTTCTAAGTG+GGG - chr3_2:85065000-85065019 Msa0432830:CDS 25.0%
!!! TCTTTCTCGTTTTATTGAAA+TGG + chr3_2:85065072-85065091 None:intergenic 25.0%
!! TTTTTAATCAAAATCCAGTG+AGG - chr3_2:85065237-85065256 Msa0432830:CDS 25.0%
! GTATTATCATACCTTCAAAT+TGG - chr3_2:85065849-85065868 Msa0432830:intron 25.0%
!! TGATTGTTCAAAGCTAATTT+TGG + chr3_2:85065998-85066017 None:intergenic 25.0%
! AATCAAGAAAATATTCGAGT+TGG + chr3_2:85066161-85066180 None:intergenic 25.0%
!!! ATTTTTTATTATCCGGTTGT+AGG - chr3_2:85066254-85066273 Msa0432830:CDS 25.0%
!!! TTTTTTATTATCCGGTTGTA+GGG - chr3_2:85066255-85066274 Msa0432830:CDS 25.0%
! ATGAGAAAATTTGACAAAAG+AGG + chr3_2:85066461-85066480 None:intergenic 25.0%
!! CTGTTGTTGGTTGATTTTAA+TGG + chr3_2:85061865-85061884 None:intergenic 30.0%
GTTGTTAGAAAATGTAGTTG+TGG + chr3_2:85061894-85061913 None:intergenic 30.0%
TTTCAGAGTGAAAAAGCAAA+AGG + chr3_2:85061929-85061948 None:intergenic 30.0%
TTAATAGTGCTTACCAGAAA+CGG + chr3_2:85062233-85062252 None:intergenic 30.0%
TGGAAAGTAAAGAACTTTAG+TGG + chr3_2:85062325-85062344 None:intergenic 30.0%
!! TTGGTTTGTTTCAAGTTAGT+TGG - chr3_2:85062412-85062431 Msa0432830:intron 30.0%
TCTTGGTTTCTTACTTATTC+TGG - chr3_2:85062693-85062712 Msa0432830:CDS 30.0%
! TGTTTTTCCCCTTATCAATT+TGG - chr3_2:85062784-85062803 Msa0432830:CDS 30.0%
! GCTTTTCTACCAAATTGATA+AGG + chr3_2:85062796-85062815 None:intergenic 30.0%
TATCAATTTGGTAGAAAAGC+AGG - chr3_2:85062796-85062815 Msa0432830:CDS 30.0%
!!! CATCAAATGTGAGTTTTGAA+AGG + chr3_2:85062975-85062994 None:intergenic 30.0%
TCAAAACTCACATTTGATGA+AGG - chr3_2:85062976-85062995 Msa0432830:intron 30.0%
!! CTTTTGGCTATTGAATATGT+TGG + chr3_2:85063033-85063052 None:intergenic 30.0%
AATATCTGAGAACTAGAAGA+TGG + chr3_2:85063199-85063218 None:intergenic 30.0%
CTAAGATTGATGCGAATAAA+TGG - chr3_2:85063236-85063255 Msa0432830:intron 30.0%
! TAAGCTTGTTTGAAGTTAGT+TGG + chr3_2:85063339-85063358 None:intergenic 30.0%
AACTAACTTCAAACAAGCTT+AGG - chr3_2:85063338-85063357 Msa0432830:intron 30.0%
ACTAACTTCAAACAAGCTTA+GGG - chr3_2:85063339-85063358 Msa0432830:intron 30.0%
TTATGGAACTTAAAATTCCG+GGG + chr3_2:85063435-85063454 None:intergenic 30.0%
! TGAAATTTTATCAGTAGCAG+CGG + chr3_2:85063461-85063480 None:intergenic 30.0%
ATAAGATAGATTTACCTTGG+GGG + chr3_2:85063547-85063566 None:intergenic 30.0%
! TTAATCGACGTTATGCATTT+TGG - chr3_2:85063635-85063654 Msa0432830:intron 30.0%
AATGATCCTTAAATCAACCA+CGG + chr3_2:85063870-85063889 None:intergenic 30.0%
CGACTATCAATACCATATTT+CGG + chr3_2:85063933-85063952 None:intergenic 30.0%
!! CGAAATATGGTATTGATAGT+CGG - chr3_2:85063931-85063950 Msa0432830:intron 30.0%
! AAACAGTCTTTTTCTCTTAC+TGG - chr3_2:85064122-85064141 Msa0432830:intron 30.0%
CTAGTATATAAAGTCAGCTT+AGG - chr3_2:85064228-85064247 Msa0432830:intron 30.0%
TGAAAACTTCCAAATTTCAG+CGG + chr3_2:85064313-85064332 None:intergenic 30.0%
CGAATCCATCAAGAAATTTA+AGG - chr3_2:85064469-85064488 Msa0432830:intron 30.0%
CTACTATAAGACTAGAGTTT+GGG + chr3_2:85064915-85064934 None:intergenic 30.0%
ACTACTATAAGACTAGAGTT+TGG + chr3_2:85064916-85064935 None:intergenic 30.0%
GGAATATTCTGATTTCTAAG+TGG - chr3_2:85064998-85065017 Msa0432830:CDS 30.0%
! TGTTGCTTGATATTGCTTAT+TGG - chr3_2:85065124-85065143 Msa0432830:CDS 30.0%
!! TAGGGCAAACTCATTTTTAT+AGG - chr3_2:85065362-85065381 Msa0432830:intron 30.0%
!! TCTTTGTCTAGTTCTTGTAA+TGG - chr3_2:85065411-85065430 Msa0432830:intron 30.0%
! AATGATAGTAACTTGCATAG+TGG - chr3_2:85065651-85065670 Msa0432830:CDS 30.0%
! ATAGTGGAGAAAATGAAACA+GGG - chr3_2:85065667-85065686 Msa0432830:intron 30.0%
GCATACTACATAGTTTGATT+TGG - chr3_2:85065807-85065826 Msa0432830:intron 30.0%
AAGAAAAGGATGACACAAAA+AGG + chr3_2:85066067-85066086 None:intergenic 30.0%
TCTGATGAATTTAGAAAGCA+AGG + chr3_2:85066101-85066120 None:intergenic 30.0%
!! AGAAAATATTCGAGTTGGTT+CGG + chr3_2:85066156-85066175 None:intergenic 30.0%
AGAAGACGAGAAATTTCATA+TGG + chr3_2:85066200-85066219 None:intergenic 30.0%
! TTTTTATTATCCGGTTGTAG+GGG - chr3_2:85066256-85066275 Msa0432830:CDS 30.0%
TGCTAAAGATACTAGAAATC+CGG - chr3_2:85066298-85066317 Msa0432830:CDS 30.0%
AGAAATAAGAGAAAGCTCTT+GGG + chr3_2:85066418-85066437 None:intergenic 30.0%
ATAGTTAGAATCAGAACGAT+AGG - chr3_2:85066682-85066701 Msa0432830:five_prime_UTR 30.0%
AGAGTGAAATGGGTAATCAA+TGG - chr3_2:85062015-85062034 Msa0432830:three_prime_UTR 35.0%
ACAACAACAACAACATCAGT+GGG - chr3_2:85062077-85062096 Msa0432830:three_prime_UTR 35.0%
!! AAAATCATGGAGGAAGTGTT+GGG + chr3_2:85062104-85062123 None:intergenic 35.0%
!!! TCCATTTTTTCTTCTCTCAG+TGG - chr3_2:85062341-85062360 Msa0432830:intron 35.0%
!!! CCATTTTTTCTTCTCTCAGT+GGG - chr3_2:85062342-85062361 Msa0432830:intron 35.0%
ACCATAAATTTGCATACCAG+GGG + chr3_2:85062451-85062470 None:intergenic 35.0%
GACCATAAATTTGCATACCA+GGG + chr3_2:85062452-85062471 None:intergenic 35.0%
TGACCATAAATTTGCATACC+AGG + chr3_2:85062453-85062472 None:intergenic 35.0%
TCATGTGAATGTTTGTGCAT+TGG - chr3_2:85062613-85062632 Msa0432830:intron 35.0%
CATGTGAATGTTTGTGCATT+GGG - chr3_2:85062614-85062633 Msa0432830:intron 35.0%
TGCCAGAAAAATCACTTCTT+GGG + chr3_2:85062856-85062875 None:intergenic 35.0%
TGAGATAAGTAACAGACTAG+TGG - chr3_2:85062877-85062896 Msa0432830:CDS 35.0%
GAGATAAGTAACAGACTAGT+GGG - chr3_2:85062878-85062897 Msa0432830:CDS 35.0%
AGATAAGTAACAGACTAGTG+GGG - chr3_2:85062879-85062898 Msa0432830:CDS 35.0%
!!! GTGAGTTTTGAAAGGAATCA+GGG + chr3_2:85062967-85062986 None:intergenic 35.0%
!!! TGTGAGTTTTGAAAGGAATC+AGG + chr3_2:85062968-85062987 None:intergenic 35.0%
TTGGCTATTGAATATGTTGG+AGG + chr3_2:85063030-85063049 None:intergenic 35.0%
ATTCGCATCAATCTTAGTGT+TGG + chr3_2:85063233-85063252 None:intergenic 35.0%
! TATTTTCACTCCCTTTACGT+TGG - chr3_2:85063600-85063619 Msa0432830:intron 35.0%
CATAAAAGATAGTCATCTGG+CGG + chr3_2:85063698-85063717 None:intergenic 35.0%
CTCCATAAAAGATAGTCATC+TGG + chr3_2:85063701-85063720 None:intergenic 35.0%
! CAGATGACTATCTTTTATGG+AGG - chr3_2:85063699-85063718 Msa0432830:intron 35.0%
TATGACACGTTAAGAATACG+AGG + chr3_2:85063768-85063787 None:intergenic 35.0%
! ACAGCAACATAAGTGTTGTA+CGG + chr3_2:85063966-85063985 None:intergenic 35.0%
AAAACTTCCAAATTTCAGCG+GGG + chr3_2:85064311-85064330 None:intergenic 35.0%
GAAAACTTCCAAATTTCAGC+GGG + chr3_2:85064312-85064331 None:intergenic 35.0%
GTCAGCCTTAAATTTCTTGA+TGG + chr3_2:85064477-85064496 None:intergenic 35.0%
TGCAACCTATGTTGTATTGA+AGG - chr3_2:85064598-85064617 Msa0432830:intron 35.0%
TTGCTCCTTCAATACAACAT+AGG + chr3_2:85064606-85064625 None:intergenic 35.0%
GGGGTAAAAAAAAACTGTAG+TGG - chr3_2:85065019-85065038 Msa0432830:CDS 35.0%
TTCACAGTTGAAGTGATTGA+TGG + chr3_2:85065045-85065064 None:intergenic 35.0%
CAACTGATGATCAACACTTT+CGG + chr3_2:85065152-85065171 None:intergenic 35.0%
TCAAGTCTAACAGTAACACT+CGG + chr3_2:85065178-85065197 None:intergenic 35.0%
ACAATTTAACTGATCCTCAC+TGG + chr3_2:85065254-85065273 None:intergenic 35.0%
! TCCTAAATTCTGACTTGAGT+TGG - chr3_2:85065278-85065297 Msa0432830:CDS 35.0%
ATGGATCAATCAATGCCTTT+GGG - chr3_2:85065305-85065324 Msa0432830:CDS 35.0%
! TGGTTTTTGATAAAGCCCAA+AGG + chr3_2:85065323-85065342 None:intergenic 35.0%
TCTTCACATGTCATAACAGA+AGG - chr3_2:85065475-85065494 Msa0432830:intron 35.0%
TATGCAGGCAGATGTTATAA+TGG - chr3_2:85065560-85065579 Msa0432830:CDS 35.0%
!! ATGTTATAATGGCTTTGGCT+GGG - chr3_2:85065571-85065590 Msa0432830:CDS 35.0%
! CATAGTGGAGAAAATGAAAC+AGG - chr3_2:85065666-85065685 Msa0432830:intron 35.0%
CAAACTATGTAGTATGCTTG+AGG + chr3_2:85065804-85065823 None:intergenic 35.0%
TTCAATCACTGCCAATTTGA+AGG + chr3_2:85065863-85065882 None:intergenic 35.0%
! ATACTGCAGGCGATATTTTT+GGG + chr3_2:85065905-85065924 None:intergenic 35.0%
GTTGTCCGATCTCATATTAA+CGG + chr3_2:85065960-85065979 None:intergenic 35.0%
AAGGATGACACAAAAAGGAT+CGG + chr3_2:85066062-85066081 None:intergenic 35.0%
AGGCATGTAAGGTAAAGAAA+AGG + chr3_2:85066081-85066100 None:intergenic 35.0%
TTTAGAAAGCAAGGCATGTA+AGG + chr3_2:85066092-85066111 None:intergenic 35.0%
!! GAAAATATTCGAGTTGGTTC+GGG + chr3_2:85066155-85066174 None:intergenic 35.0%
TAAAGATACTAGAAATCCGG+CGG - chr3_2:85066301-85066320 Msa0432830:CDS 35.0%
CAGAAATAAGAGAAAGCTCT+TGG + chr3_2:85066419-85066438 None:intergenic 35.0%
ATTATGTGGGAAACAAGAGT+AGG - chr3_2:85066508-85066527 Msa0432830:five_prime_UTR 35.0%
AAGAGTAGGATGATTGTGTA+AGG - chr3_2:85066522-85066541 Msa0432830:five_prime_UTR 35.0%
! GTTGTGGAGTTTTCTGTTGT+TGG + chr3_2:85061878-85061897 None:intergenic 40.0%
GTGAAATGGGTAATCAATGG+CGG - chr3_2:85062018-85062037 Msa0432830:three_prime_UTR 40.0%
CACAACAACAACAACATCAG+TGG - chr3_2:85062076-85062095 Msa0432830:three_prime_UTR 40.0%
! GAAAATCATGGAGGAAGTGT+TGG + chr3_2:85062105-85062124 None:intergenic 40.0%
! CACTTCCTCCATGATTTTCT+CGG - chr3_2:85062106-85062125 Msa0432830:exon 40.0%
CCCACTGAGAGAAGAAAAAA+TGG + chr3_2:85062345-85062364 None:intergenic 40.0%
CCATAAATTTGCATACCAGG+GGG + chr3_2:85062450-85062469 None:intergenic 40.0%
GTGCCAGAAAAATCACTTCT+TGG + chr3_2:85062857-85062876 None:intergenic 40.0%
!!! CTCAAGTCCTGTTTTTGTAC+AGG - chr3_2:85063093-85063112 Msa0432830:intron 40.0%
AGTAACACTTCGTCGTCATT+AGG + chr3_2:85063157-85063176 None:intergenic 40.0%
! AATGACGACGAAGTGTTACT+TGG - chr3_2:85063157-85063176 Msa0432830:intron 40.0%
CGATCTATTCTCATGAATGC+TGG - chr3_2:85063262-85063281 Msa0432830:intron 40.0%
! GAAGTTAGTTGGTGTGCAAA+AGG + chr3_2:85063328-85063347 None:intergenic 40.0%
CAGGCTGAGAGATAAATGAA+GGG + chr3_2:85063378-85063397 None:intergenic 40.0%
!! AGTTCTAGATCCTTCATCAG+CGG + chr3_2:85063401-85063420 None:intergenic 40.0%
! GGATCTAGAACTGGAATCAA+AGG - chr3_2:85063409-85063428 Msa0432830:intron 40.0%
!! ATTTCATCTGTGGTGTTGCT+CGG - chr3_2:85063475-85063494 Msa0432830:intron 40.0%
! TCTCCTTTTGCCAACGTAAA+GGG + chr3_2:85063613-85063632 None:intergenic 40.0%
! TTCTCCTTTTGCCAACGTAA+AGG + chr3_2:85063614-85063633 None:intergenic 40.0%
CATTGAACAGCAGTCAACAT+GGG - chr3_2:85063658-85063677 Msa0432830:intron 40.0%
! CGCCAGATGACTATCTTTTA+TGG - chr3_2:85063696-85063715 Msa0432830:intron 40.0%
! TGATGATGTCCACCAACATA+AGG - chr3_2:85063737-85063756 Msa0432830:intron 40.0%
! GTTCATCCGTGGTTGATTTA+AGG - chr3_2:85063861-85063880 Msa0432830:intron 40.0%
ATCAGGTTTCAGCCGAAATA+TGG - chr3_2:85063918-85063937 Msa0432830:intron 40.0%
!! TGCTGTTTCTACAGCCTATT+TGG - chr3_2:85063980-85063999 Msa0432830:intron 40.0%
!! GCTGTTTCTACAGCCTATTT+GGG - chr3_2:85063981-85064000 Msa0432830:intron 40.0%
TGTGCAATGACTACCCAAAT+AGG + chr3_2:85063997-85064016 None:intergenic 40.0%
TGGGTAGTCATTGCACAATA+TGG - chr3_2:85064000-85064019 Msa0432830:intron 40.0%
GTAGTCATTGCACAATATGG+TGG - chr3_2:85064003-85064022 Msa0432830:intron 40.0%
TATGTTTCCCCGCTGAAATT+TGG - chr3_2:85064301-85064320 Msa0432830:intron 40.0%
CTTAGCATCAGCAATGTGTT+TGG + chr3_2:85064363-85064382 None:intergenic 40.0%
CCTGCTTGGTTAAGATTTCA+GGG + chr3_2:85064684-85064703 None:intergenic 40.0%
CCTGAAATCTTAACCAAGCA+GGG - chr3_2:85064682-85064701 Msa0432830:intron 40.0%
GCTGAATGAGAATCAAAGAG+GGG + chr3_2:85064893-85064912 None:intergenic 40.0%
GGCTGAATGAGAATCAAAGA+GGG + chr3_2:85064894-85064913 None:intergenic 40.0%
ACATGTATACCCAAGACAGT+AGG - chr3_2:85064969-85064988 Msa0432830:CDS 40.0%
CATGTATACCCAAGACAGTA+GGG - chr3_2:85064970-85064989 Msa0432830:CDS 40.0%
GCCAACTCAAGTCAGAATTT+AGG + chr3_2:85065282-85065301 None:intergenic 40.0%
CATGGATCAATCAATGCCTT+TGG - chr3_2:85065304-85065323 Msa0432830:CDS 40.0%
! AAGAGACGCATAGTTTGTCT+TGG - chr3_2:85065444-85065463 Msa0432830:intron 40.0%
! AGAGACGCATAGTTTGTCTT+GGG - chr3_2:85065445-85065464 Msa0432830:intron 40.0%
GGCAGATGTTATAATGGCTT+TGG - chr3_2:85065566-85065585 Msa0432830:CDS 40.0%
!! GATGTTATAATGGCTTTGGC+TGG - chr3_2:85065570-85065589 Msa0432830:CDS 40.0%
ACCAGCTTTGCAGTAGATTT+CGG + chr3_2:85065630-85065649 None:intergenic 40.0%
! AACAGGGTTAGTGAGTAATG+TGG - chr3_2:85065683-85065702 Msa0432830:intron 40.0%
GTAGTATGCTTGAGGATTAC+CGG + chr3_2:85065796-85065815 None:intergenic 40.0%
!! TACTGCAGGCGATATTTTTG+GGG + chr3_2:85065904-85065923 None:intergenic 40.0%
! GATACTGCAGGCGATATTTT+TGG + chr3_2:85065906-85065925 None:intergenic 40.0%
TTTACTGCGTCAAACTGTGT+GGG + chr3_2:85065928-85065947 None:intergenic 40.0%
TTTGACGCAGTAAACGATCT+CGG - chr3_2:85065934-85065953 Msa0432830:intron 40.0%
ACAAAAAGGATCGGTGGAAT+TGG + chr3_2:85066053-85066072 None:intergenic 40.0%
AGCTATGCAGCAGAGTGAAA+TGG - chr3_2:85062004-85062023 Msa0432830:three_prime_UTR 45.0%
GCTATGCAGCAGAGTGAAAT+GGG - chr3_2:85062005-85062024 Msa0432830:three_prime_UTR 45.0%
TCATGCCGAGAAAATCATGG+AGG + chr3_2:85062114-85062133 None:intergenic 45.0%
GCTTCATGCCGAGAAAATCA+TGG + chr3_2:85062117-85062136 None:intergenic 45.0%
GTGCTTACCAGAAACGGTTT+CGG + chr3_2:85062227-85062246 None:intergenic 45.0%
CCCCCTGGTATGCAAATTTA+TGG - chr3_2:85062447-85062466 Msa0432830:intron 45.0%
!! CAGGTATCGAATCATCTCGA+GGG - chr3_2:85062815-85062834 Msa0432830:CDS 45.0%
TCACTTCTTGGGCCATAGAA+TGG + chr3_2:85062845-85062864 None:intergenic 45.0%
! GGCCCAAGAAGTGATTTTTC+TGG - chr3_2:85062851-85062870 Msa0432830:CDS 45.0%
TCTGGAGGAACCCATAAATG+AGG + chr3_2:85062927-85062946 None:intergenic 45.0%
!! CATTTGAAAGGCATCTCTGG+AGG + chr3_2:85062942-85062961 None:intergenic 45.0%
CTCCAGAGATGCCTTTCAAA+TGG - chr3_2:85062940-85062959 Msa0432830:intron 45.0%
!! GACCATTTGAAAGGCATCTC+TGG + chr3_2:85062945-85062964 None:intergenic 45.0%
GGAATCAGGGACCATTTGAA+AGG + chr3_2:85062954-85062973 None:intergenic 45.0%
!! GCATCAATCTTAGTGTTGGC+GGG + chr3_2:85063229-85063248 None:intergenic 45.0%
! CGCATCAATCTTAGTGTTGG+CGG + chr3_2:85063230-85063249 None:intergenic 45.0%
AAGCTTAGGGATACCATTGC+CGG - chr3_2:85063352-85063371 Msa0432830:intron 45.0%
CTGAGAGATAAATGAAGGGC+CGG + chr3_2:85063374-85063393 None:intergenic 45.0%
GCAGGCTGAGAGATAAATGA+AGG + chr3_2:85063379-85063398 None:intergenic 45.0%
! GCTGATGAAGGATCTAGAAC+TGG - chr3_2:85063400-85063419 Msa0432830:intron 45.0%
ATCAGTAGCAGCGGTGTTTA+TGG + chr3_2:85063452-85063471 None:intergenic 45.0%
ACTCCCTTTACGTTGGCAAA+AGG - chr3_2:85063607-85063626 Msa0432830:intron 45.0%
GCATTGAACAGCAGTCAACA+TGG - chr3_2:85063657-85063676 Msa0432830:intron 45.0%
TACGAGGTCAGACCTTATGT+TGG + chr3_2:85063752-85063771 None:intergenic 45.0%
!! TGCTTAAGCTTTGGGTACAC+TGG - chr3_2:85064084-85064103 Msa0432830:intron 45.0%
!! TTAAGCTTTGGGTACACTGG+CGG - chr3_2:85064087-85064106 Msa0432830:intron 45.0%
TCGTGTTCGATGCAAAATGC+TGG + chr3_2:85064452-85064471 None:intergenic 45.0%
TGTTAGACATGCACTCAGAG+TGG - chr3_2:85064535-85064554 Msa0432830:intron 45.0%
CGAACAGACAGCTAATCAAC+TGG + chr3_2:85064561-85064580 None:intergenic 45.0%
CTATGCACTCTCAACGAAAG+GGG + chr3_2:85064634-85064653 None:intergenic 45.0%
CCTATGCACTCTCAACGAAA+GGG + chr3_2:85064635-85064654 None:intergenic 45.0%
TCCTATGCACTCTCAACGAA+AGG + chr3_2:85064636-85064655 None:intergenic 45.0%
CCCTGAAATCTTAACCAAGC+AGG - chr3_2:85064681-85064700 Msa0432830:intron 45.0%
CCCTGCTTGGTTAAGATTTC+AGG + chr3_2:85064685-85064704 None:intergenic 45.0%
AGAATCAAAGAGGGGTCTCA+GGG + chr3_2:85064885-85064904 None:intergenic 45.0%
GGGCTGAATGAGAATCAAAG+AGG + chr3_2:85064895-85064914 None:intergenic 45.0%
CAACACATCTCGCATTTCGA+AGG + chr3_2:85065109-85065128 None:intergenic 45.0%
!! TCTGACTTGAGTTGGCTACA+TGG - chr3_2:85065286-85065305 Msa0432830:CDS 45.0%
ACCGAAATCTACTGCAAAGC+TGG - chr3_2:85065626-85065645 Msa0432830:CDS 45.0%
CATTCCCACAAGAGCTTCAT+GGG - chr3_2:85065706-85065725 Msa0432830:intron 45.0%
ACTTCCCATGAAGCTCTTGT+GGG + chr3_2:85065713-85065732 None:intergenic 45.0%
AACTTCCCATGAAGCTCTTG+TGG + chr3_2:85065714-85065733 None:intergenic 45.0%
! TACCGGTTGGAGTAGATACA+CGG + chr3_2:85065779-85065798 None:intergenic 45.0%
TATGCTTGAGGATTACCGGT+TGG + chr3_2:85065792-85065811 None:intergenic 45.0%
GTTTACTGCGTCAAACTGTG+TGG + chr3_2:85065929-85065948 None:intergenic 45.0%
CTCGGCCGTTAATATGAGAT+CGG - chr3_2:85065952-85065971 Msa0432830:intron 45.0%
GATGACACAAAAAGGATCGG+TGG + chr3_2:85066059-85066078 None:intergenic 45.0%
! GCTCTTTTGTCTTCGGAACT+GGG + chr3_2:85066341-85066360 None:intergenic 45.0%
! TCACTGCGCTCTTTTGTCTT+CGG + chr3_2:85066348-85066367 None:intergenic 45.0%
TCTAAACCAGTCACCGTATC+AGG - chr3_2:85066608-85066627 Msa0432830:five_prime_UTR 45.0%
AGAAGCTGCTTGACCTGATA+CGG + chr3_2:85066624-85066643 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAATTGA+GGG + chr3_2:85062380-85062399 None:intergenic 5.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr3_2:85061964-85061983 None:intergenic 50.0%
! ATCAATGGCGGTGCTGAGAA+TGG - chr3_2:85062030-85062049 Msa0432830:three_prime_UTR 50.0%
!! ACGTCGGTGGAAGTATCAGT+GGG + chr3_2:85062139-85062158 None:intergenic 50.0%
!! AACGTCGGTGGAAGTATCAG+TGG + chr3_2:85062140-85062159 None:intergenic 50.0%
CTGATACTTCCACCGACGTT+AGG - chr3_2:85062140-85062159 Msa0432830:CDS 50.0%
TTCCACCGACGTTAGGTTAC+CGG - chr3_2:85062147-85062166 Msa0432830:CDS 50.0%
TTTCGGAGGTGGAGGAGAAA+GGG + chr3_2:85062210-85062229 None:intergenic 50.0%
CTTACCAGAAACGGTTTCGG+AGG + chr3_2:85062224-85062243 None:intergenic 50.0%
! TGGAGTTGATTGTTTCCCCC+TGG - chr3_2:85062432-85062451 Msa0432830:intron 50.0%
!! GCAGGTATCGAATCATCTCG+AGG - chr3_2:85062814-85062833 Msa0432830:CDS 50.0%
CTCGAGGGAGTTCCATTCTA+TGG - chr3_2:85062830-85062849 Msa0432830:CDS 50.0%
CGGAGGACCTGTACAAAAAC+AGG + chr3_2:85063103-85063122 None:intergenic 50.0%
TCTCTCCTCCAGACGCATTT+CGG + chr3_2:85063123-85063142 None:intergenic 50.0%
CTGGAGGAGAGAGATCTAGA+AGG - chr3_2:85063131-85063150 Msa0432830:intron 50.0%
!! TCAATCTTAGTGTTGGCGGG+AGG + chr3_2:85063226-85063245 None:intergenic 50.0%
GATAAATGAAGGGCCGGCAA+TGG + chr3_2:85063368-85063387 None:intergenic 50.0%
AGAACTGGAATCAAAGGCCC+CGG - chr3_2:85063415-85063434 Msa0432830:intron 50.0%
ATAGATTTACCTTGGGGGCG+TGG + chr3_2:85063542-85063561 None:intergenic 50.0%
AAAGATAGTCATCTGGCGGC+TGG + chr3_2:85063694-85063713 None:intergenic 50.0%
GAGGTCAGACCTTATGTTGG+TGG + chr3_2:85063749-85063768 None:intergenic 50.0%
! CCCTTTCGTTGAGAGTGCAT+AGG - chr3_2:85064632-85064651 Msa0432830:intron 50.0%
GAGAATCAAAGAGGGGTCTC+AGG + chr3_2:85064886-85064905 None:intergenic 50.0%
CATGACAATTGCACGCGCTT+TGG - chr3_2:85065535-85065554 Msa0432830:CDS 50.0%
!! ATGGCTTTGGCTGGGTCAAA+TGG - chr3_2:85065579-85065598 Msa0432830:CDS 50.0%
!! CTGGGTCAAATGGTGGATCT+TGG - chr3_2:85065589-85065608 Msa0432830:CDS 50.0%
GCATTCCCACAAGAGCTTCA+TGG - chr3_2:85065705-85065724 Msa0432830:intron 50.0%
CATGGGAAGTTGTCTGCTAC+TGG - chr3_2:85065723-85065742 Msa0432830:intron 50.0%
TACACGGTCAACAGGTCCAA+CGG + chr3_2:85065763-85065782 None:intergenic 50.0%
GGAGTAGATACACGGTCAAC+AGG + chr3_2:85065771-85065790 None:intergenic 50.0%
GACCGTGTATCTACTCCAAC+CGG - chr3_2:85065774-85065793 Msa0432830:intron 50.0%
CAAACTGTGTGGGATACTGC+AGG + chr3_2:85065918-85065937 None:intergenic 50.0%
!! TTGGTTCGGGCAAGGTCTAA+AGG + chr3_2:85066142-85066161 None:intergenic 50.0%
!! TATTCGAGTTGGTTCGGGCA+AGG + chr3_2:85066150-85066169 None:intergenic 50.0%
CCTTGATGTACCCCTACAAC+CGG + chr3_2:85066269-85066288 None:intergenic 50.0%
! CGCTCTTTTGTCTTCGGAAC+TGG + chr3_2:85066342-85066361 None:intergenic 50.0%
TGCCTCCGGTAACCTAACGT+CGG + chr3_2:85062155-85062174 None:intergenic 55.0%
GTTTCGGAGGTGGAGGAGAA+AGG + chr3_2:85062211-85062230 None:intergenic 55.0%
AGAAACGGTTTCGGAGGTGG+AGG + chr3_2:85062218-85062237 None:intergenic 55.0%
TCCACCTCCGAAACCGTTTC+TGG - chr3_2:85062217-85062236 Msa0432830:intron 55.0%
ACCAGAAACGGTTTCGGAGG+TGG + chr3_2:85062221-85062240 None:intergenic 55.0%
CTAGATCCTTCATCAGCGGC+AGG + chr3_2:85063397-85063416 None:intergenic 55.0%
!! TCATCTGTGGTGTTGCTCGG+TGG - chr3_2:85063478-85063497 Msa0432830:intron 55.0%
TAGAATCATCCACGCCCCCA+AGG - chr3_2:85063530-85063549 Msa0432830:intron 55.0%
TTCGGTCTGCAGTTCATCCG+TGG - chr3_2:85063850-85063869 Msa0432830:intron 55.0%
GCTTGAGTCAAGACCCTGCT+TGG + chr3_2:85064698-85064717 None:intergenic 55.0%
TACCCAAGACAGTAGGGTGC+AGG - chr3_2:85064976-85064995 Msa0432830:CDS 55.0%
ACCCAAGACAGTAGGGTGCA+GGG - chr3_2:85064977-85064996 Msa0432830:CDS 55.0%
TCCCTGCACCCTACTGTCTT+GGG + chr3_2:85064981-85065000 None:intergenic 55.0%
TTCCCTGCACCCTACTGTCT+TGG + chr3_2:85064982-85065001 None:intergenic 55.0%
GCTTTGGCTGGGTCAAATGG+TGG - chr3_2:85065582-85065601 Msa0432830:CDS 55.0%
! CCGGTTGTAGGGGTACATCA+AGG - chr3_2:85066266-85066285 Msa0432830:CDS 55.0%
GCTTGACCTGATACGGTGAC+TGG + chr3_2:85066617-85066636 None:intergenic 55.0%
CTCCGGTAACCTAACGTCGG+TGG + chr3_2:85062152-85062171 None:intergenic 60.0%
CACCGACGTTAGGTTACCGG+AGG - chr3_2:85062150-85062169 Msa0432830:CDS 60.0%
GAGGCTGATGCTGATGCCTC+CGG + chr3_2:85062169-85062188 None:intergenic 60.0%
CAGGTCCTCCGAAATGCGTC+TGG - chr3_2:85063112-85063131 Msa0432830:intron 60.0%
GTCCTCCGAAATGCGTCTGG+AGG - chr3_2:85063115-85063134 Msa0432830:intron 60.0%
CTCCTCCAGACGCATTTCGG+AGG + chr3_2:85063120-85063139 None:intergenic 60.0%
GCGGAGGATGCTGCATGGAA+GGG + chr3_2:85063288-85063307 None:intergenic 60.0%
GGAGTCAACTGTCCTCCACG+CGG + chr3_2:85063307-85063326 None:intergenic 60.0%
TCTCAGCCTGCCGCTGATGA+AGG - chr3_2:85063388-85063407 Msa0432830:intron 60.0%
ATAGTCATCTGGCGGCTGGC+AGG + chr3_2:85063690-85063709 None:intergenic 60.0%
TCAAAGAGGGGTCTCAGGGC+AGG + chr3_2:85064881-85064900 None:intergenic 60.0%
GGTCAACAGGTCCAACGGCA+CGG + chr3_2:85065758-85065777 None:intergenic 60.0%
! GGATCTGCTGCTTGAACCGC+CGG + chr3_2:85066320-85066339 None:intergenic 60.0%
TCAGCATCAGCCTCCTCCGC+CGG - chr3_2:85062175-85062194 Msa0432830:CDS 65.0%
GGAGAAAGGGCCACGAGCAC+CGG + chr3_2:85062197-85062216 None:intergenic 65.0%
CGCGGAGGATGCTGCATGGA+AGG + chr3_2:85063289-85063308 None:intergenic 65.0%
TCCATGCAGCATCCTCCGCG+TGG - chr3_2:85063289-85063308 Msa0432830:intron 65.0%
TCCACGCGGAGGATGCTGCA+TGG + chr3_2:85063293-85063312 None:intergenic 65.0%
ATGCAGCATCCTCCGCGTGG+AGG - chr3_2:85063292-85063311 Msa0432830:intron 65.0%
GTCAACTGTCCTCCACGCGG+AGG + chr3_2:85063304-85063323 None:intergenic 65.0%
ATCTGGCGGCTGGCAGGTGT+TGG + chr3_2:85063684-85063703 None:intergenic 65.0%
GCACGCGCTTTGGCGTATGC+AGG - chr3_2:85065545-85065564 Msa0432830:CDS 65.0%
! GGCAGTTCTAGCCGTGCCGT+TGG - chr3_2:85065744-85065763 Msa0432830:intron 65.0%
!! GAAAGGGCCACGAGCACCGG+CGG + chr3_2:85062194-85062213 None:intergenic 70.0%
! GCCTCCTCCGCCGGTGCTCG+TGG - chr3_2:85062184-85062203 Msa0432830:CDS 80.0%
!!! GCCACGAGCACCGGCGGAGG+AGG + chr3_2:85062188-85062207 None:intergenic 80.0%
!!! AGGGCCACGAGCACCGGCGG+AGG + chr3_2:85062191-85062210 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 85061733 85066749 85061733 ID=Msa0432830;Name=Msa0432830
chr3_2 mRNA 85061733 85066749 85061733 ID=Msa0432830-mRNA-1;Parent=Msa0432830;Name=Msa0432830-mRNA-1;_AED=0.21;_eAED=0.21;_QI=301|1|1|1|1|1|6|382|413
chr3_2 exon 85061733 85062206 85061733 ID=Msa0432830-mRNA-1:exon:24211;Parent=Msa0432830-mRNA-1
chr3_2 exon 85062687 85062915 85062687 ID=Msa0432830-mRNA-1:exon:24210;Parent=Msa0432830-mRNA-1
chr3_2 exon 85064724 85064814 85064724 ID=Msa0432830-mRNA-1:exon:24209;Parent=Msa0432830-mRNA-1
chr3_2 exon 85064931 85065367 85064931 ID=Msa0432830-mRNA-1:exon:24208;Parent=Msa0432830-mRNA-1
chr3_2 exon 85065485 85065672 85065485 ID=Msa0432830-mRNA-1:exon:24207;Parent=Msa0432830-mRNA-1
chr3_2 exon 85066244 85066749 85066244 ID=Msa0432830-mRNA-1:exon:24206;Parent=Msa0432830-mRNA-1
chr3_2 five_prime_UTR 85066449 85066749 85066449 ID=Msa0432830-mRNA-1:five_prime_utr;Parent=Msa0432830-mRNA-1
chr3_2 CDS 85066244 85066448 85066244 ID=Msa0432830-mRNA-1:cds;Parent=Msa0432830-mRNA-1
chr3_2 CDS 85065485 85065672 85065485 ID=Msa0432830-mRNA-1:cds;Parent=Msa0432830-mRNA-1
chr3_2 CDS 85064931 85065367 85064931 ID=Msa0432830-mRNA-1:cds;Parent=Msa0432830-mRNA-1
chr3_2 CDS 85064724 85064814 85064724 ID=Msa0432830-mRNA-1:cds;Parent=Msa0432830-mRNA-1
chr3_2 CDS 85062687 85062915 85062687 ID=Msa0432830-mRNA-1:cds;Parent=Msa0432830-mRNA-1
chr3_2 CDS 85062115 85062206 85062115 ID=Msa0432830-mRNA-1:cds;Parent=Msa0432830-mRNA-1
chr3_2 three_prime_UTR 85061733 85062114 85061733 ID=Msa0432830-mRNA-1:three_prime_utr;Parent=Msa0432830-mRNA-1
Gene Sequence

>Msa0432830

ATGGCGGTGCTGAGAATGGTTCACTCACACTCACAGTCTCAACACAACAACAACAACATCAGTGGGACCCAACACTTCCTCCATGATTTTCTCGGCATGAAGCCCACTGATACTTCCACCGACGTTAGGTTACCGGAGGCATCAGCATCAGCCTCCTCCGCCGGTGCTCGTGGCCCTTTCTCCTCCACCTCCGAAACCGTTTCTGAAAAGCAGGTATCGAATCATCTCGAGGGAGTTCCATTCTATGGCCCAAGAAGTGATTTTTCTGGCACTGAGATAAGTAACAGACTAGTGGGGAATAAGAGAAGTAATTCTGATTCCTCATTTATGGGTTCCTCCAGAGATGCCTTTCAAATGGTCCCTGATTCCTTTCAAAACTCACATTTGATGAAGGTCCTCCGAAATGCGTCTGGAGGAGAGAGATCTAGAAGGCCTAATGACGACGAAGTGTTACTTGGTATGCAGTCAATGAAGCCATCTTCTAGTTCTCAGATATTTCATCCTCCCGCCAACACTAAGATTGATGCGAATAAATGGGAACGATCTATTCTCATGAATGCTGGCCCTTCCATGCAGCATCCTCCGCGTGGAGGACAGTTGACTCCTTTTGCACACCAACTAACTTCAAACAAGCTTAGGGATACCATTGCCGGCCCTTCATTTATCTCTCAGCCTGCCGCTGATGAAGGATCTAGAACTGGAATCAAAGGCCCCGGAATTTTAAGTTCCATAAACACCGCTGCTACTGATAAAATTTCATCTGTGGTGTTGCTCGGTGGAAGCAGACCAAAACCTCTAACTAATATAATAGAATCATCCACGCCCCCAAGCAGTCAACATGGGCCAACACCTGCCAGCCGCCAGATGACTATCTTTTATGGAGGTCAAGCTCATGTTTTTGATGATGTCCACCAACATAAGGCAGATGTTATAATGGCTTTGGCTGGGTCAAATGGTGGATCTTGGTCGACAGCATTCTCACCGAAATCTACTGCAAAGCTGGTCAATGATAGTAACTTGCATAGTGGAGAAAATGAAACAGGGTTAGTGAGTAATGTGGCATTCCCACAAGAGCTTCATGGGAAGTTGTCTGCTACTGGCAGTTCTAGCCGTGCCGTTGGACCTGTTGACCGTGTATCTACTCCAACCGGGGTACATCAAGGAAGCATTTTTGCTAAAGATACTAGAAATCCGGCGGTTCAAGCAGCAGATCCCAGTTCCGAAGACAAAAGAGCGCAGTGA

Protein sequence

>Msa0432830

MAVLRMVHSHSQSQHNNNNISGTQHFLHDFLGMKPTDTSTDVRLPEASASASSAGARGPFSSTSETVSEKQVSNHLEGVPFYGPRSDFSGTEISNRLVGNKRSNSDSSFMGSSRDAFQMVPDSFQNSHLMKVLRNASGGERSRRPNDDEVLLGMQSMKPSSSSQIFHPPANTKIDANKWERSILMNAGPSMQHPPRGGQLTPFAHQLTSNKLRDTIAGPSFISQPAADEGSRTGIKGPGILSSINTAATDKISSVVLLGGSRPKPLTNIIESSTPPSSQHGPTPASRQMTIFYGGQAHVFDDVHQHKADVIMALAGSNGGSWSTAFSPKSTAKLVNDSNLHSGENETGLVSNVAFPQELHGKLSATGSSSRAVGPVDRVSTPTGVHQGSIFAKDTRNPAVQAADPSSEDKRAQ*