AlfalfaGEDB | Msa1450170

M. sativa cultivar zhongmu-4 / Msa1450170

KEGG: -
GO: GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1450170	sp\|Q84MB2\|TIF8_ARATH	39.409	406	150	15	26	408	27	359	2.63e-50	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1450170	G7JBP9	95.913	416	14	2	1	413	1	416	0.0	800

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TFs/TRs:

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Gene ID	Type	Classification
Msa1450170	TF	Tify

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0432830	Msa1450170	0.993169	6.548226e-198	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1450170	MtrunA17_Chr3g0138401	95.913	416	14	2	1	413	1	416	0.0	800
Msa1450170	MtrunA17_Chr4g0005121	91.429	70	5	1	1	70	1	69	5.44e-30	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1450170	AT4G32570.1	39.409	406	150	15	26	408	27	359	2.67e-51	176
Msa1450170	AT4G32570.2	40.717	307	97	9	26	315	27	265	9.30e-50	172

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Find 148 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATGGAGGAAGTGTT+GGG	0.513221	tig0032806:+19076	None:intergenic
AAAGATAGTCATCTGGCGGC+TGG	0.544851	tig0032806:+17486	None:intergenic
AACAGGGTTAGTGAGTAATG+TGG	0.689431	tig0032806:-15494	Msa1450170:CDS
AACGTCGGTGGAAGTATCAG+TGG	0.609086	tig0032806:+19040	None:intergenic
AACTAACTTCAAACAAGCTT+AGG	0.400478	tig0032806:-17839	Msa1450170:CDS
AACTTCCCATGAAGCTCTTG+TGG	0.491396	tig0032806:+15466	None:intergenic
AAGAGTAGGATGATTGTGTA+AGG	0.529874	tig0032806:-14655	Msa1450170:three_prime_UTR
AAGCTTAGGGATACCATTGC+CGG	0.471593	tig0032806:-17825	Msa1450170:CDS
AATATCTGAGAACTAGAAGA+TGG	0.544323	tig0032806:+17981	None:intergenic
AATGACGACGAAGTGTTACT+TGG	0.506870	tig0032806:-18020	Msa1450170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGTTAGAAAATGTAGTTG+TGG	+	tig0032806:14613-14632	None:intergenic	30.0%
TTTCAGAGTGAAAAAGCAAA+AGG	+	tig0032806:14648-14667	None:intergenic	30.0%
TTAATAGTGCTTACCAGAAA+CGG	+	tig0032806:14942-14961	None:intergenic	30.0%
TGGAAAGTAAAGAACTTTAG+TGG	+	tig0032806:15033-15052	None:intergenic	30.0%
TCTTGGTTTCTTACTTATTC+TGG	-	tig0032806:15402-15421	Msa1450170:intron	30.0%
TATCAATTTGGTAGAAAAGC+AGG	-	tig0032806:15505-15524	Msa1450170:CDS	30.0%
TCAAAACTCACATTTGATGA+AGG	-	tig0032806:15685-15704	Msa1450170:intron	30.0%
AATATCTGAGAACTAGAAGA+TGG	+	tig0032806:15908-15927	None:intergenic	30.0%
CTAAGATTGATGCGAATAAA+TGG	-	tig0032806:15945-15964	Msa1450170:intron	30.0%
AACTAACTTCAAACAAGCTT+AGG	-	tig0032806:16047-16066	Msa1450170:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0032806	gene	14450	19458	14450	ID=Msa1450170;Name=Msa1450170
tig0032806	mRNA	14450	19458	14450	ID=Msa1450170-mRNA-1;Parent=Msa1450170;Name=Msa1450170-mRNA-1;_AED=0.07;_eAED=0.07;_QI=293\|1\|1\|1\|1\|1\|6\|382\|413
tig0032806	exon	14450	14923	14450	ID=Msa1450170-mRNA-1:exon:17334;Parent=Msa1450170-mRNA-1
tig0032806	exon	15404	15632	15404	ID=Msa1450170-mRNA-1:exon:17333;Parent=Msa1450170-mRNA-1
tig0032806	exon	17441	17531	17441	ID=Msa1450170-mRNA-1:exon:17332;Parent=Msa1450170-mRNA-1
tig0032806	exon	17648	18084	17648	ID=Msa1450170-mRNA-1:exon:17331;Parent=Msa1450170-mRNA-1
tig0032806	exon	18202	18389	18202	ID=Msa1450170-mRNA-1:exon:17330;Parent=Msa1450170-mRNA-1
tig0032806	exon	18961	19458	18961	ID=Msa1450170-mRNA-1:exon:17329;Parent=Msa1450170-mRNA-1
tig0032806	five_prime_UTR	19166	19458	19166	ID=Msa1450170-mRNA-1:five_prime_utr;Parent=Msa1450170-mRNA-1
tig0032806	CDS	18961	19165	18961	ID=Msa1450170-mRNA-1:cds;Parent=Msa1450170-mRNA-1
tig0032806	CDS	18202	18389	18202	ID=Msa1450170-mRNA-1:cds;Parent=Msa1450170-mRNA-1
tig0032806	CDS	17648	18084	17648	ID=Msa1450170-mRNA-1:cds;Parent=Msa1450170-mRNA-1
tig0032806	CDS	17441	17531	17441	ID=Msa1450170-mRNA-1:cds;Parent=Msa1450170-mRNA-1
tig0032806	CDS	15404	15632	15404	ID=Msa1450170-mRNA-1:cds;Parent=Msa1450170-mRNA-1
tig0032806	CDS	14832	14923	14832	ID=Msa1450170-mRNA-1:cds;Parent=Msa1450170-mRNA-1
tig0032806	three_prime_UTR	14450	14831	14450	ID=Msa1450170-mRNA-1:three_prime_utr;Parent=Msa1450170-mRNA-1

Gene Sequence

>Msa1450170

ATGGCGGTGCTGAGAATGGTTCACTCACACTCACAGTCTCAACACAACAACAACAACATCAGTGGGACCCAACACTTCCTCCATGATTTTCTCGGCATGAAGCCCACTGATACTTCCACCGACGTTAGGTTACCGGAGGCATCAGCATCAGCCTCCTCCGCCGGTGCTCGTGGCCCTTTCTCCTCCACCTCCGAAACCGTTTCTGAAAAGCAGGTATCGAATCATCTCGAGGGAGTTCCATTCTATGGCCCAAGAAGTGATTTTTCTGGCACTGAGATAAGTAACAGACTAGTGGGGAATAAGAGAAGTAATTCTGATTCCTCATTTATGGGTTCCTCCAGAGATGCCTTTCAAATGGTCCCTGATTCCTTTCAAAACTCACATTTGATGAAGGTCCTCCGAAATGCGTCTGGAGGAGAGAGATCTAGAAGGCCTAATGACGACGAAGTGTTACTTGGTATGCAGTCAATGAAGCCATCTTCTAGTTCTCAGATATTTCATCCTCCCGCCAACACTAAGATTGATGCGAATAAATGGGAACGATCTATTCTCATGAATGCTGGCCCTTCCATGCAGCATCCTCCGCGTGGAGGACAGTTGACTCCTTTTGCACACCAACTAACTTCAAACAAGCTTAGGGATACCATTGCCGGCCCTTCATTTATCTCTCAGCCTGCCGCTGATGAAGGATCTAGAACTGGAATCAAAGGCCCCGGAATTTTAAGTTCCATAAACACCGCTGCTACTGATAAAATTTCATCTGTGGTGTTGCTCGGTGGAAGCAGACCAAAACCTCTAACTAATATAATAGAATCATCCACGCCCCCAAGCAGTCAACATGGGCCAACACCTGCCAGCCGCCAGATGACTATCTTTTATGGAGGTCAAGCTCATGTTTTTGATGATGTCCACCAACATAAGGCAGATGTTATAATGGCTTTGGCTGGGTCAAATGGTGGATCTTGGTCGACAGCATTCTCACCGAAATCTACTGCAAAGCTGGTCAATGATAGTAACTTGCATAGTGGAGAAAATGAAACAGGGTTAGTGAGTAATGTGGCATTCCCACAAGAGCTTCATGGGAAGTTGTCTGCTACTGGCAGTTCTAGCCGTGCCGTTGGACCTGTTGACCGTGTATCTACTCCAACCGGGGTACATCAAGGAAGCATTTTTGCTAAAGATACTAGAAATCCGGCGGTTCAAGCAGCAGATCCCAGTTCCGAAGACAAAAGAGCGCAGTGA

Protein sequence

>Msa1450170

MAVLRMVHSHSQSQHNNNNISGTQHFLHDFLGMKPTDTSTDVRLPEASASASSAGARGPFSSTSETVSEKQVSNHLEGVPFYGPRSDFSGTEISNRLVGNKRSNSDSSFMGSSRDAFQMVPDSFQNSHLMKVLRNASGGERSRRPNDDEVLLGMQSMKPSSSSQIFHPPANTKIDANKWERSILMNAGPSMQHPPRGGQLTPFAHQLTSNKLRDTIAGPSFISQPAADEGSRTGIKGPGILSSINTAATDKISSVVLLGGSRPKPLTNIIESSTPPSSQHGPTPASRQMTIFYGGQAHVFDDVHQHKADVIMALAGSNGGSWSTAFSPKSTAKLVNDSNLHSGENETGLVSNVAFPQELHGKLSATGSSSRAVGPVDRVSTPTGVHQGSIFAKDTRNPAVQAADPSSEDKRAQ*