AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0432840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432840 MtrunA17_Chr3g0138411 96.352 1206 44 0 1 1206 1 1206 0.0 2431
Msa0432840 MtrunA17_Chr3g0133461 74.241 955 171 8 319 1206 397 1343 0.0 1433
Msa0432840 MtrunA17_Chr3g0133461 39.498 438 188 9 69 461 16 421 9.01e-66 244
Msa0432840 MtrunA17_Chr5g0438991 66.024 986 209 12 240 1190 64 958 0.0 1271
Msa0432840 MtrunA17_Chr6g0456861 70.552 815 173 10 388 1199 22 772 0.0 1167
Msa0432840 MtrunA17_Chr4g0000031 48.039 816 391 10 403 1198 893 1695 0.0 787
Msa0432840 MtrunA17_Chr6g0456851 48.212 923 363 22 15 913 2 833 0.0 774
Msa0432840 MtrunA17_Chr6g0456851 62.667 75 28 0 955 1029 807 881 1.40e-20 98.6
Msa0432840 MtrunA17_Chr6g0456931 72.385 239 66 0 622 860 1 239 7.32e-124 381
Msa0432840 MtrunA17_Chr5g0401991 58.781 279 53 6 851 1125 1 221 5.23e-91 292
Msa0432840 MtrunA17_Chr5g0402001 91.089 101 9 0 700 800 1 101 5.48e-59 197
Msa0432840 MtrunA17_Chr1g0169961 68.696 115 35 1 395 509 55 168 4.78e-46 163
Msa0432840 MtrunA17_Chr5g0439001 68.687 99 26 2 802 900 1 94 1.13e-36 134
Msa0432840 MtrunA17_Chr6g0456921 49.057 159 21 6 700 856 1 101 6.87e-32 127
Msa0432840 MtrunA17_Chr6g0456911 78.182 55 12 0 967 1021 6 60 3.87e-23 94.4
Msa0432840 MtrunA17_Chr0c02g0489811 77.193 57 13 0 965 1021 5 61 8.43e-23 93.2
Msa0432840 MtrunA17_Chr7g0229221 73.684 57 15 0 965 1021 5 61 1.84e-21 89.7
Msa0432840 MtrunA17_Chr0c02g0489721 78.723 47 10 0 895 941 1 47 8.72e-21 86.7
Msa0432840 MtrunA17_Chr7g0229231 78.723 47 10 0 895 941 1 47 8.72e-21 86.7
Msa0432840 MtrunA17_Chr0c02g0489731 70.175 57 17 0 965 1021 5 61 5.20e-20 85.5
Msa0432840 MtrunA17_Chr0c02g0489821 80.000 45 9 0 897 941 1 45 7.37e-20 84.0
Msa0432840 MtrunA17_Chr6g0456781 50.704 71 27 2 481 551 25 87 1.39e-13 69.3
Msa0432840 MtrunA17_Chr5g0402011 90.323 31 3 0 546 576 21 51 1.70e-13 67.0
Msa0432840 MtrunA17_Chr5g0401281 40.741 81 46 2 1119 1198 279 358 4.12e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432840 AT1G79000.1 46.420 866 420 12 363 1198 832 1683 0.0 800
Msa0432840 AT1G79000.2 46.420 866 420 12 363 1198 832 1683 0.0 800
Msa0432840 AT1G79000.3 46.420 866 420 12 363 1198 808 1659 0.0 800
Msa0432840 AT1G16710.3 47.741 819 393 10 400 1198 863 1666 0.0 785
Msa0432840 AT1G16710.10 47.741 819 393 10 400 1198 863 1666 0.0 785
Msa0432840 AT1G16710.8 47.741 819 393 10 400 1198 863 1666 0.0 785
Msa0432840 AT1G16710.7 47.741 819 393 10 400 1198 863 1666 0.0 785
Msa0432840 AT1G16710.2 47.741 819 393 10 400 1198 860 1663 0.0 784
Msa0432840 AT1G16710.6 47.741 819 393 10 400 1198 824 1627 0.0 784
Msa0432840 AT1G16710.4 47.741 819 393 10 400 1198 824 1627 0.0 784
Msa0432840 AT1G16710.5 47.741 819 393 10 400 1198 824 1627 0.0 784
Msa0432840 AT1G16710.1 47.741 819 393 10 400 1198 889 1692 0.0 783
Msa0432840 AT3G12980.1 46.903 791 385 12 425 1198 883 1655 0.0 754
Msa0432840 AT3G12980.2 46.903 791 385 12 425 1198 802 1574 0.0 753
Msa0432840 AT1G55970.1 43.056 792 422 10 425 1198 677 1457 0.0 663
Msa0432840 AT1G55970.2 43.434 792 405 12 425 1198 677 1443 0.0 660
Msa0432840 AT1G67220.1 42.072 782 400 20 427 1179 604 1361 0.0 611
Msa0432840 AT1G16710.9 50.089 561 266 5 400 951 863 1418 0.0 579
Msa0432840 AT5G67480.1 42.308 78 43 2 1117 1192 271 348 4.54e-12 69.7
Msa0432840 AT5G67480.3 42.308 78 43 2 1117 1192 271 348 4.54e-12 69.7
Msa0432840 AT5G67480.2 42.308 78 43 2 1117 1192 282 359 5.24e-12 69.7

Find 248 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGCCTCAATTATTGTATT+TGG 0.083119 3_2:+85086658 None:intergenic
TTCTTTGTTCCTACTGAAAA+AGG 0.108559 3_2:-85084547 Msa0432840:CDS
CTGAACTTGGTGGGAATATT+TGG 0.140434 3_2:-85088312 Msa0432840:CDS
TTACCAAAAGCTGCTAATTT+TGG 0.160765 3_2:-85085688 Msa0432840:CDS
TCAACACCACTATGTCAATT+TGG 0.177074 3_2:-85083348 Msa0432840:CDS
GAAAGTGAATAAGCTGTTTC+TGG 0.192097 3_2:-85085386 Msa0432840:CDS
GGCAGGTCATGAACAATAAA+AGG 0.212094 3_2:+85087696 None:intergenic
CACTGAATGCAAGAAATTTC+AGG 0.225944 3_2:-85084013 Msa0432840:CDS
CAGCCTCAATTATTGTATTT+GGG 0.232255 3_2:+85086659 None:intergenic
CCCTGGTAGGCAATATCTTT+TGG 0.238306 3_2:+85084115 None:intergenic
CCAGAGTAGGGTTGTTTAAA+TGG 0.239132 3_2:+85083541 None:intergenic
TCCTCTGCTTAACTTCTTAC+AGG 0.257556 3_2:+85088842 None:intergenic
AGAGTGGATTATTTGAAAAT+AGG 0.257666 3_2:-85083650 Msa0432840:CDS
TGACGGTTGTATGTCATTTC+GGG 0.258908 3_2:+85088166 None:intergenic
TTCCGAGTCTTTGCAATTCC+TGG 0.259668 3_2:+85083029 None:intergenic
AACTCATAGACTCGTTATTC+TGG 0.278374 3_2:+85087319 None:intergenic
GTGACGGTTGTATGTCATTT+CGG 0.290972 3_2:+85088165 None:intergenic
TTTGAGTCAACTTGTGTTCA+TGG 0.292920 3_2:+85083397 None:intergenic
GTCAAAACAGAGAGATTGTT+TGG 0.293545 3_2:-85087349 Msa0432840:CDS
ATGGTCTTTAAAGCTCTATT+TGG 0.306293 3_2:+85084391 None:intergenic
CTACAACAACAAAAGAGATT+TGG 0.312602 3_2:-85085779 Msa0432840:CDS
ACAACTGATGAAGAATTTCT+TGG 0.316401 3_2:+85088280 None:intergenic
GCACCAAAATTAGCAGCTTT+TGG 0.316485 3_2:+85085685 None:intergenic
CTTTGTTTACCATGAGATAT+TGG 0.319700 3_2:-85085032 Msa0432840:intron
TCTGATGCCGCTGGTTATTA+TGG 0.320032 3_2:-85087744 Msa0432840:CDS
ATATCCGCTGAAACAAGTTT+AGG 0.321167 3_2:+85087243 None:intergenic
ACTTGTTTCAGCGGATATTT+CGG 0.322049 3_2:-85087238 Msa0432840:CDS
CCACTCTTTGTTCTTCTCTC+AGG 0.324213 3_2:+85085070 None:intergenic
TCTCGTTTGCCATACTTTGA+TGG 0.326312 3_2:-85084505 Msa0432840:CDS
CCTTTGAAACACGCAAATAA+TGG 0.326562 3_2:-85087549 Msa0432840:intron
TTGCATCACCAGAATGTCTT+TGG 0.327789 3_2:+85084339 None:intergenic
GTTTCTCAACTTGCTACATA+TGG 0.336552 3_2:-85084890 Msa0432840:CDS
CATTTGCTCTGCTTGCTATA+AGG 0.336680 3_2:-85083436 Msa0432840:CDS
CACGAGTTCATGCTTAGAAT+TGG 0.340621 3_2:-85087193 Msa0432840:CDS
CGCATTCGGAGCCGAACTCC+TGG 0.358494 3_2:+85085152 None:intergenic
GGGTCAGATAGTCTCCCTTC+TGG 0.359944 3_2:+85087717 None:intergenic
GGAATGTACGCCCAGGAGTT+CGG 0.366380 3_2:-85085163 Msa0432840:CDS
TCTTTGGCAGTGTCTTTAGA+AGG 0.367904 3_2:+85084355 None:intergenic
CAACACCACTATGTCAATTT+GGG 0.370714 3_2:-85083347 Msa0432840:CDS
GGTGGGAAAATTACATTCAA+TGG 0.372058 3_2:-85085999 Msa0432840:CDS
CTTGCGAAGGGTTCTGAACT+TGG 0.374398 3_2:-85088325 Msa0432840:CDS
CCATATGAAACGGGTAAGTT+AGG 0.379009 3_2:+85087618 None:intergenic
CAAACTGAAATTGATACTTC+TGG 0.380328 3_2:+85083607 None:intergenic
ATGTGTACACAACGCTGATT+TGG 0.380704 3_2:+85085124 None:intergenic
AGACACTGCCAAAGACATTC+TGG 0.381560 3_2:-85084347 Msa0432840:CDS
ACTGAAGAAAATATTATTGT+TGG 0.383324 3_2:-85084592 Msa0432840:CDS
TGCTTAGAATTGGAAGATAC+AGG 0.390600 3_2:-85087183 Msa0432840:CDS
CATGTTGTGGCGTACGCATC+AGG 0.393034 3_2:-85086100 Msa0432840:CDS
TCTTGATCTATAAGAGAATT+CGG 0.393830 3_2:+85085336 None:intergenic
TGCCATGAAGTGATAGCATC+TGG 0.393848 3_2:-85084051 Msa0432840:CDS
GGCAGTGTCTTTAGAAGGAT+TGG 0.396884 3_2:+85084360 None:intergenic
TATCCGCTGAAACAAGTTTA+GGG 0.397186 3_2:+85087244 None:intergenic
CTTCTGTTTCAGCAGATTGA+AGG 0.398990 3_2:-85085205 Msa0432840:CDS
CTGATTTGGATTGCCGCATT+CGG 0.399351 3_2:+85085138 None:intergenic
AAAATAGTTGCTACATGATC+TGG 0.402998 3_2:+85087572 None:intergenic
GGTGCAAAATTCGAGTAAAT+CGG 0.403532 3_2:-85083098 Msa0432840:CDS
TCCCAGATGCTATCACTTCA+TGG 0.404024 3_2:+85084049 None:intergenic
CCTAACTTACCCGTTTCATA+TGG 0.408983 3_2:-85087618 Msa0432840:CDS
GAGGACATACAAGGCAGAAC+TGG 0.410877 3_2:-85086838 Msa0432840:CDS
GTGGGAAAATTACATTCAAT+GGG 0.411726 3_2:-85085998 Msa0432840:CDS
CTGCCTTGCTCTCCTGATGA+TGG 0.413683 3_2:-85087678 Msa0432840:CDS
AATGTAGAATACCACGTTGC+AGG 0.414844 3_2:-85083008 Msa0432840:intron
TTCATATGGTGGAAGCAATC+TGG 0.416270 3_2:-85087604 Msa0432840:CDS
TCTGAGAAAGGAATCTGTTC+AGG 0.416816 3_2:-85086584 Msa0432840:intron
CAGTAGTCTCCATCAAAGTA+TGG 0.418646 3_2:+85084496 None:intergenic
CCCTCGAAAGGCTTAGAATC+TGG 0.419221 3_2:-85086943 Msa0432840:CDS
TCAAAACAGAGAGATTGTTT+GGG 0.419623 3_2:-85087348 Msa0432840:CDS
GCCTGTGCTCCTTCAAGAAA+AGG 0.420899 3_2:-85084867 Msa0432840:CDS
CATGGTTCTTGGCAAGTCCT+TGG 0.422145 3_2:+85085663 None:intergenic
AAACAACGCATTCCGAATCT+TGG 0.428970 3_2:-85082778 Msa0432840:CDS
GTGCAAAATTCGAGTAAATC+GGG 0.429183 3_2:-85083097 Msa0432840:CDS
ATGTAAATCTTCAAATTGAA+TGG 0.432375 3_2:+85087275 None:intergenic
CGCTGACGCTGTTGTTGTTG+TGG 0.434562 3_2:+85088793 None:intergenic
CGGCGTAGCTTATCATTCTT+CGG 0.442591 3_2:+85084801 None:intergenic
TATCCCATCCTGGTTGAATC+CGG 0.446469 3_2:+85086738 None:intergenic
TGGTCACTGAGCATGGTTCT+TGG 0.450291 3_2:+85085652 None:intergenic
TGCAGCTCCACGCCAAGATT+CGG 0.450882 3_2:+85082766 None:intergenic
ACAATATATTTCAAAAGTGC+TGG 0.451731 3_2:-85083485 Msa0432840:CDS
AAATGTGTGCATCAGAACTA+TGG 0.452913 3_2:+85083842 None:intergenic
GCTGACGCTGTTGTTGTTGT+GGG 0.453481 3_2:+85088794 None:intergenic
GTCTTTGCAATTCCTGGAGT+GGG 0.453840 3_2:+85083035 None:intergenic
GGAAGAAGAATTTGATGCAC+AGG 0.454851 3_2:-85086057 Msa0432840:CDS
CCTGTGCTCCTTCAAGAAAA+GGG 0.454880 3_2:-85084866 Msa0432840:CDS
CAGTTAGAGACTATCGAGTC+TGG 0.455443 3_2:-85086973 Msa0432840:CDS
GCAGAGCAAATGGTACATTC+TGG 0.456546 3_2:+85083447 None:intergenic
AAATGACATACAACCGTCAC+TGG 0.459682 3_2:-85088162 Msa0432840:CDS
AACAACAGCGTCAGCGATAC+AGG 0.459884 3_2:-85088786 Msa0432840:intron
TTCTTGATTTGAGAACAGTT+TGG 0.463384 3_2:+85083141 None:intergenic
CCATTATTTGCGTGTTTCAA+AGG 0.463803 3_2:+85087549 None:intergenic
CACACACATATCAGCAAGTA+GGG 0.463928 3_2:+85087644 None:intergenic
TTCTAAGTGGTCACTGAGCA+TGG 0.465266 3_2:+85085645 None:intergenic
CTACTGGTGTGGTTATGTTA+TGG 0.465543 3_2:-85084479 Msa0432840:CDS
TGTTCTGAAAATCCAACTCC+TGG 0.467769 3_2:+85087148 None:intergenic
GTAGTAATAATTCCAGCATA+GGG 0.468557 3_2:+85087990 None:intergenic
ATGGACTTTCCCATTGAAGT+AGG 0.469146 3_2:+85087294 None:intergenic
ACTTACCACTGCTGCTTCAA+AGG 0.469361 3_2:-85087969 Msa0432840:intron
CATCATCAGGAGAGCAAGGC+AGG 0.473198 3_2:+85087679 None:intergenic
TGAGCAATTTGCCCCTATGC+TGG 0.473268 3_2:-85088002 Msa0432840:CDS
TAGGGTTGTTTAAATGGTAG+AGG 0.474232 3_2:+85083547 None:intergenic
AACCCTACTCTGGTGACTGT+TGG 0.474451 3_2:-85083531 Msa0432840:CDS
GATGCACACATTTCAAAGAA+TGG 0.475962 3_2:-85083832 Msa0432840:CDS
ATCATTATGCTTAGTGTTGG+AGG 0.477828 3_2:+85083683 None:intergenic
GAAATACAGCAGAAACTCAA+TGG 0.479828 3_2:-85086917 Msa0432840:CDS
GCGAAATAAACCCCAGGAGT+TGG 0.480620 3_2:-85087160 Msa0432840:CDS
GAGGACATTCAAGGCAGAAC+CGG 0.485084 3_2:-85086757 Msa0432840:CDS
TTTCTCAACTTGCTACATAT+GGG 0.487718 3_2:-85084889 Msa0432840:CDS
TACGCTGATTCAACGTCTCC+AGG 0.490165 3_2:+85087793 None:intergenic
GATATCATTATGCTTAGTGT+TGG 0.494216 3_2:+85083680 None:intergenic
GCCAAAAGATATTGCCTACC+AGG 0.497791 3_2:-85084116 Msa0432840:CDS
TTATGGAAGAGAGAGCAAAC+TGG 0.499974 3_2:-85085603 Msa0432840:CDS
CGAGGTGCATACACTATGTC+AGG 0.500355 3_2:-85083809 Msa0432840:intron
GATCTATAAGAGAATTCGGC+AGG 0.501906 3_2:+85085340 None:intergenic
CTTATAGCAAGCAGAGCAAA+TGG 0.504219 3_2:+85083437 None:intergenic
AGAACTGGATTCATCCAGGC+GGG 0.506173 3_2:-85086823 Msa0432840:CDS
TCGTGAGTCAAATGAGAAAA+CGG 0.506997 3_2:-85083322 Msa0432840:intron
TTATACTAACTGCCCACTCC+AGG 0.508191 3_2:-85083047 Msa0432840:CDS
CACGCAGATGCTGAAACTGC+TGG 0.511708 3_2:-85083220 Msa0432840:intron
AGAACTTATTATTGTTCATG+AGG 0.512614 3_2:-85086785 Msa0432840:CDS
GGGGTTGATGAACCATCATC+AGG 0.513452 3_2:+85087666 None:intergenic
AACTTACCCGTTTCATATGG+TGG 0.514230 3_2:-85087615 Msa0432840:CDS
CGAAGGGTTCTGAACTTGGT+GGG 0.514839 3_2:-85088321 Msa0432840:CDS
AGTAGTAATAATTCCAGCAT+AGG 0.515149 3_2:+85087989 None:intergenic
GTTATAAGAATTCTAAAGGT+GGG 0.515230 3_2:-85086016 Msa0432840:CDS
GGTTATTATGGCGTTCCAGA+AGG 0.515241 3_2:-85087732 Msa0432840:CDS
GCCAGATTCTAAGCCTTTCG+AGG 0.516084 3_2:+85086942 None:intergenic
GATCATCATTGATGAATACT+TGG 0.516147 3_2:+85083569 None:intergenic
TTGCTTCCACCATATGAAAC+GGG 0.517072 3_2:+85087609 None:intergenic
ACATATTAGTAGTCTGAGAA+AGG 0.521580 3_2:-85086596 Msa0432840:CDS
CAGTCCGTGGAGAATCCTAC+TGG 0.523094 3_2:+85088199 None:intergenic
ATTGCTTCCACCATATGAAA+CGG 0.523926 3_2:+85087608 None:intergenic
GCAAACTGGGAGAAAGTTGA+AGG 0.527129 3_2:-85085589 Msa0432840:CDS
AGCCTCAATTATTGTATTTG+GGG 0.527381 3_2:+85086660 None:intergenic
ATCCCCAAATACAATAATTG+AGG 0.528154 3_2:-85086662 Msa0432840:CDS
CTCCAGGAATTGCAAAGACT+CGG 0.528433 3_2:-85083031 Msa0432840:CDS
AGAAATTTCAGGAGTGTGAA+AGG 0.528641 3_2:-85084002 Msa0432840:intron
TTCCAACAGTCACCAGAGTA+GGG 0.530507 3_2:+85083529 None:intergenic
GAACTTATTATTGTTCATGA+GGG 0.530986 3_2:-85086784 Msa0432840:CDS
TGGATTACTTACATGTGGAC+TGG 0.532864 3_2:+85088219 None:intergenic
GTTTCTAAGTCTGATGCCGC+TGG 0.533231 3_2:-85087753 Msa0432840:CDS
ATTACATCTGAGGAGGAAGC+AGG 0.535806 3_2:-85086194 Msa0432840:CDS
TTTCCAACAGTCACCAGAGT+AGG 0.537493 3_2:+85083528 None:intergenic
ACGTGTGAACAAATCAATCA+AGG 0.540321 3_2:+85086633 None:intergenic
TATTGTTCATGAGGGTGAAG+AGG 0.540740 3_2:-85086776 Msa0432840:CDS
TCTAAGCATGAACTCGTGCT+AGG 0.543758 3_2:+85087198 None:intergenic
AATGCAATAAATGCAAAAGA+TGG 0.545817 3_2:-85085822 Msa0432840:CDS
CCATTTAAACAACCCTACTC+TGG 0.546250 3_2:-85083541 Msa0432840:CDS
AGTCTTTGCAATTCCTGGAG+TGG 0.547250 3_2:+85083034 None:intergenic
TCTGCTTGCTATAAGGATAG+AGG 0.547525 3_2:-85083429 Msa0432840:CDS
TTTCAAATAATCCACTCTCA+AGG 0.548304 3_2:+85083655 None:intergenic
GCGAAGGGTTCTGAACTTGG+TGG 0.548679 3_2:-85088322 Msa0432840:CDS
AGAAGGATTGGCATGTCCCA+TGG 0.548735 3_2:+85084372 None:intergenic
GCACACACATATCAGCAAGT+AGG 0.548931 3_2:+85087643 None:intergenic
CTTAACTTCTTACAGGAAGG+AGG 0.552557 3_2:+85088849 None:intergenic
TCAGCGTATGCAAGCTCTAG+TGG 0.552958 3_2:-85087778 Msa0432840:CDS
GTTCTGAAAATCCAACTCCT+GGG 0.553233 3_2:+85087149 None:intergenic
AGGGAACGAGAATCTTGATA+AGG 0.553771 3_2:-85085569 Msa0432840:intron
GAGGGTGAAGAGGACATTCA+AGG 0.555916 3_2:-85086766 Msa0432840:CDS
GTGTGTTATAAGAATTCTAA+AGG 0.558028 3_2:-85086020 Msa0432840:CDS
TTAAGTTCCTTCCTGAGAGT+AGG 0.559411 3_2:+85086880 None:intergenic
ACACATGCCAATTATGTCAA+AGG 0.562566 3_2:-85086160 Msa0432840:CDS
GCATTCGGAGCCGAACTCCT+GGG 0.563589 3_2:+85085153 None:intergenic
ATTAACACAGATTACATCTG+AGG 0.565214 3_2:-85086204 Msa0432840:intron
CATACTTTGATGGAGACTAC+TGG 0.567433 3_2:-85084495 Msa0432840:CDS
AGCTGAAAAGATGCTTGCGA+AGG 0.568364 3_2:-85088338 Msa0432840:exon
GCAGGTCATGAACAATAAAA+GGG 0.568506 3_2:+85087697 None:intergenic
AGATATTGATGACGATGAAG+AGG 0.569424 3_2:-85086857 Msa0432840:CDS
AGGCAGAACTGGATTCATCC+AGG 0.569909 3_2:-85086827 Msa0432840:CDS
TCAACAGTAAGCCTACTCTC+AGG 0.572821 3_2:-85086891 Msa0432840:CDS
CTGCTTAACTTCTTACAGGA+AGG 0.573387 3_2:+85088846 None:intergenic
TATGGAAGAGAGAGCAAACT+GGG 0.573853 3_2:-85085602 Msa0432840:CDS
TTAACTTCTTACAGGAAGGA+GGG 0.576436 3_2:+85088850 None:intergenic
GAATAAAGAAAGAGACACAA+AGG 0.577472 3_2:-85088821 Msa0432840:five_prime_UTR
CGATTCCCAAATTGACATAG+TGG 0.580947 3_2:+85083342 None:intergenic
CCTGAGAGAAGAACAAAGAG+TGG 0.581788 3_2:-85085070 Msa0432840:CDS
TCATTATGCTTAGTGTTGGA+GGG 0.581798 3_2:+85083684 None:intergenic
AACTGGATTCATCCAGGCGG+GGG 0.582008 3_2:-85086821 Msa0432840:CDS
CAAAACAGAGAGATTGTTTG+GGG 0.582814 3_2:-85087347 Msa0432840:CDS
GAACCGGATTCAACCAGGAT+GGG 0.586122 3_2:-85086741 Msa0432840:CDS
AGGCAGAACCGGATTCAACC+AGG 0.589059 3_2:-85086746 Msa0432840:CDS
GAACCATCATCAGGAGAGCA+AGG 0.589504 3_2:+85087675 None:intergenic
CAGGAGTTCGGCTCCGAATG+CGG 0.589631 3_2:-85085151 Msa0432840:CDS
TGATAGCATCTGGGAAGCGA+TGG 0.590031 3_2:-85084041 Msa0432840:CDS
CAGTAGGATTCTCCACGGAC+TGG 0.590312 3_2:-85088198 Msa0432840:CDS
CCAGATTCTAAGCCTTTCGA+GGG 0.591619 3_2:+85086943 None:intergenic
GAACAGTTTGGATAAGAGCA+TGG 0.592137 3_2:+85083153 None:intergenic
CAAACGAGAAGTTGTCACCT+TGG 0.592914 3_2:+85084519 None:intergenic
AAATAGAGCTTTAAAGACCA+TGG 0.593540 3_2:-85084389 Msa0432840:CDS
ATTCCCTAAACTTGTTTCAG+CGG 0.593760 3_2:-85087247 Msa0432840:CDS
GTTATTATGGCGTTCCAGAA+GGG 0.598014 3_2:-85087731 Msa0432840:CDS
TACAGGGCGAAATAAACCCC+AGG 0.598885 3_2:-85087166 Msa0432840:CDS
GTTATGTTATGGAAGCAGCC+AGG 0.598981 3_2:-85084468 Msa0432840:CDS
TACGAAAAGACGGAAAATGA+CGG 0.604361 3_2:-85087100 Msa0432840:CDS
GAAAGTGTTTCAAAAGAACA+AGG 0.604473 3_2:+85087009 None:intergenic
CAGCGTATGCAAGCTCTAGT+GGG 0.605184 3_2:-85087777 Msa0432840:CDS
AATGATATCATCCTTGAGAG+TGG 0.608883 3_2:-85083666 Msa0432840:CDS
TGATCAATCGACTTACAAGA+TGG 0.610821 3_2:-85087037 Msa0432840:CDS
CTGTGCTCCTTCAAGAAAAG+GGG 0.610873 3_2:-85084865 Msa0432840:CDS
TCTGGAATGATTCCCTCGAA+AGG 0.612821 3_2:-85086955 Msa0432840:CDS
TGTTATAAGAATTCTAAAGG+TGG 0.613504 3_2:-85086017 Msa0432840:CDS
TAAAGAAAGAGACACAAAGG+AGG 0.613624 3_2:-85088818 Msa0432840:five_prime_UTR
TTCTGAAAATCCAACTCCTG+GGG 0.615940 3_2:+85087150 None:intergenic
GCCATGAAGTGATAGCATCT+GGG 0.616414 3_2:-85084050 Msa0432840:CDS
GACGATGAAGAGGACATACA+AGG 0.617846 3_2:-85086847 Msa0432840:CDS
TAACTTCTTACAGGAAGGAG+GGG 0.618021 3_2:+85088851 None:intergenic
AGAACCGGATTCAACCAGGA+TGG 0.619756 3_2:-85086742 Msa0432840:CDS
AATAGAGCTTTAAAGACCAT+GGG 0.619881 3_2:-85084388 Msa0432840:CDS
GCTGAAAAGATGCTTGCGAA+GGG 0.620277 3_2:-85088337 Msa0432840:exon
TGCTACAACCTACGAAAAGA+CGG 0.621114 3_2:-85087110 Msa0432840:CDS
ATGGTAAACAAAGGTACGAA+GGG 0.622204 3_2:+85085042 None:intergenic
CCTACTGGATTACTTACATG+TGG 0.622783 3_2:+85088214 None:intergenic
ACAAACCTTTGAAGCAGCAG+TGG 0.625425 3_2:+85087964 None:intergenic
GCAGGAGGAATATATGAACC+TGG 0.625899 3_2:-85087811 Msa0432840:intron
AGAATGATAAGCTACGCCGT+TGG 0.627014 3_2:-85084797 Msa0432840:intron
CCAAAAGATATTGCCTACCA+GGG 0.627033 3_2:-85084115 Msa0432840:CDS
TCCTGTAAGAAGTTAAGCAG+AGG 0.627414 3_2:-85088843 Msa0432840:five_prime_UTR
CACACATATCAGCAAGTAGG+GGG 0.627930 3_2:+85087646 None:intergenic
CAATATCTCATGGTAAACAA+AGG 0.628488 3_2:+85085033 None:intergenic
GCATGGTTCAGCATTAGTTG+CGG 0.636133 3_2:+85083170 None:intergenic
GGGATGATAACGCCAGTCCG+TGG 0.637062 3_2:+85088186 None:intergenic
AAAGAAAGAGACACAAAGGA+GGG 0.637892 3_2:-85088817 Msa0432840:five_prime_UTR
CAGTAAGCCTACTCTCAGGA+AGG 0.640031 3_2:-85086887 Msa0432840:CDS
AAAGAAATGATCATATACGT+TGG 0.641068 3_2:+85084564 None:intergenic
GTTGCTACATGATCTGGTGT+TGG 0.641354 3_2:+85087578 None:intergenic
CATGGTAAACAAAGGTACGA+AGG 0.641848 3_2:+85085041 None:intergenic
GTTTCTGGACATCATTCCAG+AGG 0.650501 3_2:-85085371 Msa0432840:CDS
TCATTGATGAATACTTGGCA+CGG 0.650719 3_2:+85083574 None:intergenic
TGCAAAATTCGAGTAAATCG+GGG 0.651340 3_2:-85083096 Msa0432840:CDS
GAAGAAGAATTTGATGCACA+GGG 0.652467 3_2:-85086056 Msa0432840:CDS
AACACAGATTACATCTGAGG+AGG 0.653744 3_2:-85086201 Msa0432840:intron
ATCTATAAGAGAATTCGGCA+GGG 0.656485 3_2:+85085341 None:intergenic
GCTTAGAATTGGAAGATACA+GGG 0.658280 3_2:-85087182 Msa0432840:CDS
GAACTGGATTCATCCAGGCG+GGG 0.658515 3_2:-85086822 Msa0432840:CDS
CCACATGTAAGTAATCCAGT+AGG 0.658631 3_2:-85088214 Msa0432840:CDS
TTTAGAATTCTTATAACACA+CGG 0.658685 3_2:+85086022 None:intergenic
TAGTAATAATTCCAGCATAG+GGG 0.660364 3_2:+85087991 None:intergenic
AGCTATTCTCTCATGCTCGT+AGG 0.662256 3_2:-85083119 Msa0432840:CDS
ACGCATTCCGAATCTTGGCG+TGG 0.678117 3_2:-85082773 Msa0432840:CDS
TAATCCAGTAGGATTCTCCA+CGG 0.679485 3_2:-85088203 Msa0432840:CDS
CAAACTGGGAGAAAGTTGAA+GGG 0.687892 3_2:-85085588 Msa0432840:CDS
TTTGATGGAGACTACTGGTG+TGG 0.693838 3_2:-85084490 Msa0432840:CDS
ACACATTTCAAAGAATGGCG+AGG 0.706634 3_2:-85083827 Msa0432840:CDS
TGGAACGCCATAATAACCAG+CGG 0.726670 3_2:+85087737 None:intergenic
ACACATATCAGCAAGTAGGG+GGG 0.728095 3_2:+85087647 None:intergenic
ACACACATATCAGCAAGTAG+GGG 0.734890 3_2:+85087645 None:intergenic
CAGAACTGGATTCATCCAGG+CGG 0.736162 3_2:-85086824 Msa0432840:CDS
TGGGAAAATTACATTCAATG+GGG 0.742909 3_2:-85085997 Msa0432840:CDS
TTGATGAATACTTGGCACGG+CGG 0.746659 3_2:+85083577 None:intergenic
ACAGTCACACACCTGCAACG+TGG 0.756031 3_2:+85082997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTATATTTTTAGTTTA+GGG + chr3_2:85082547-85082566 None:intergenic 10.0%
!! CAAAATAAATATAAAGAAAT+AGG + chr3_2:85088584-85088603 None:intergenic 10.0%
!!! GGTATTTATATTTTTAGTTT+AGG + chr3_2:85082548-85082567 None:intergenic 15.0%
!! AATTTCAATGAATGAAATTA+GGG + chr3_2:85082719-85082738 None:intergenic 15.0%
!! TAATTTCATTCATTGAAATT+GGG - chr3_2:85082719-85082738 Msa0432840:exon 15.0%
!!! ATTTATTTGTTAATTCATTC+AGG + chr3_2:85082878-85082897 None:intergenic 15.0%
!! AATGAATTAACAAATAAATG+CGG - chr3_2:85082879-85082898 Msa0432840:intron 15.0%
!!! TATTTGTTTATTATTTCTTG+TGG - chr3_2:85083030-85083049 Msa0432840:CDS 15.0%
!! TAAAATTGTTAACTTCTATA+TGG + chr3_2:85085194-85085213 None:intergenic 15.0%
!! TAAAACATAAATAGAAAGAA+TGG + chr3_2:85086460-85086479 None:intergenic 15.0%
!!! TATATTTATTTTGATTTTGC+AGG - chr3_2:85088591-85088610 Msa0432840:intron 15.0%
!!! ATATTTATTTTGATTTTGCA+GGG - chr3_2:85088592-85088611 Msa0432840:intron 15.0%
!! CAATTTCAATGAATGAAATT+AGG + chr3_2:85082720-85082739 None:intergenic 20.0%
!! CTAATTTCATTCATTGAAAT+TGG - chr3_2:85082718-85082737 Msa0432840:exon 20.0%
!! ATGAATTAACAAATAAATGC+GGG - chr3_2:85082880-85082899 Msa0432840:intron 20.0%
!! AATAAACAAATATCAGTTAG+AGG + chr3_2:85083022-85083041 None:intergenic 20.0%
!! ACGAATAAGGATTAAAAATT+GGG + chr3_2:85083921-85083940 None:intergenic 20.0%
!! ATGTAAATCTTCAAATTGAA+TGG + chr3_2:85084145-85084164 None:intergenic 20.0%
!!! TTTAGAATTCTTATAACACA+CGG + chr3_2:85085398-85085417 None:intergenic 20.0%
!!! CGTTTTTAATTTCTTTTAAG+CGG + chr3_2:85085695-85085714 None:intergenic 20.0%
!! CGCTTAAAAGAAATTAAAAA+CGG - chr3_2:85085693-85085712 Msa0432840:CDS 20.0%
!!! CTTTTTAAACTCTATTTCTA+TGG - chr3_2:85086415-85086434 Msa0432840:intron 20.0%
!! AAAACAAAGAAGATAAAAGA+AGG + chr3_2:85086725-85086744 None:intergenic 20.0%
!! TTTATATTGTTTGTTTATGC+AGG - chr3_2:85086778-85086797 Msa0432840:CDS 20.0%
!! GTATCTTTCTATGATAAAAA+AGG - chr3_2:85086800-85086819 Msa0432840:CDS 20.0%
!! ACTGAAGAAAATATTATTGT+TGG - chr3_2:85086825-85086844 Msa0432840:CDS 20.0%
!! ATAAAAGAATATATCCCATT+GGG + chr3_2:85087157-85087176 None:intergenic 20.0%
!! TATAAAAGAATATATCCCAT+TGG + chr3_2:85087158-85087177 None:intergenic 20.0%
!! ATCATGTAAATAACTTAAAC+TGG + chr3_2:85087219-85087238 None:intergenic 20.0%
!! AAGTATGTATTCATTTCAAA+GGG + chr3_2:85087484-85087503 None:intergenic 20.0%
! AATGAATGAAATTAGGGTTA+GGG + chr3_2:85082713-85082732 None:intergenic 25.0%
! GATAAACGATGAATTGATTA+AGG + chr3_2:85082765-85082784 None:intergenic 25.0%
! AATTCATCGTTTATCAATGT+CGG - chr3_2:85082770-85082789 Msa0432840:CDS 25.0%
! GGTTAAGAATGTGAATTAAA+TGG + chr3_2:85082857-85082876 None:intergenic 25.0%
!! TTATCAAAACATCTCTTTTG+CGG + chr3_2:85083173-85083192 None:intergenic 25.0%
! CGAATAAGGATTAAAAATTG+GGG + chr3_2:85083920-85083939 None:intergenic 25.0%
! CACGAATAAGGATTAAAAAT+TGG + chr3_2:85083922-85083941 None:intergenic 25.0%
! GCATAAGTAGCAAATTAAAT+GGG + chr3_2:85084033-85084052 None:intergenic 25.0%
! TGCATAAGTAGCAAATTAAA+TGG + chr3_2:85084034-85084053 None:intergenic 25.0%
! AGAACTTATTATTGTTCATG+AGG - chr3_2:85084632-85084651 Msa0432840:intron 25.0%
! GAACTTATTATTGTTCATGA+GGG - chr3_2:85084633-85084652 Msa0432840:intron 25.0%
!! ATGGTTCTTCTTTTAATCAT+TGG - chr3_2:85084973-85084992 Msa0432840:intron 25.0%
! TTCTTCCTTTCTACAAAAAT+AGG + chr3_2:85085347-85085366 None:intergenic 25.0%
! GTGTGTTATAAGAATTCTAA+AGG - chr3_2:85085397-85085416 Msa0432840:CDS 25.0%
!! TGTTATAAGAATTCTAAAGG+TGG - chr3_2:85085400-85085419 Msa0432840:CDS 25.0%
!! GTTATAAGAATTCTAAAGGT+GGG - chr3_2:85085401-85085420 Msa0432840:CDS 25.0%
! TAATCGATATTGAAACTTAC+AGG + chr3_2:85085502-85085521 None:intergenic 25.0%
! AATGCAATAAATGCAAAAGA+TGG - chr3_2:85085595-85085614 Msa0432840:CDS 25.0%
!!! CAAAAAGTCTTTTTTCTAAG+TGG + chr3_2:85085788-85085807 None:intergenic 25.0%
!! TACAATTTTGCAGAAATTCA+AGG + chr3_2:85085954-85085973 None:intergenic 25.0%
! TTGAATTTCTGCAAAATTGT+AGG - chr3_2:85085953-85085972 Msa0432840:CDS 25.0%
! TCTTGATCTATAAGAGAATT+CGG + chr3_2:85086084-85086103 None:intergenic 25.0%
!! TCTATTATGTCTGTATTTTC+AGG - chr3_2:85086184-85086203 Msa0432840:CDS 25.0%
!! TTGATTCTGTCAAGTATTTT+AGG - chr3_2:85086324-85086343 Msa0432840:intron 25.0%
! AGAAAAATACCAATATCTCA+TGG + chr3_2:85086397-85086416 None:intergenic 25.0%
!! ACCTTGATTTTTGTAAGAAA+CGG - chr3_2:85086503-85086522 Msa0432840:intron 25.0%
! CAAACAATATAAAGATTCAG+TGG + chr3_2:85086771-85086790 None:intergenic 25.0%
! AAAGAAATGATCATATACGT+TGG + chr3_2:85086856-85086875 None:intergenic 25.0%
! CAAGTATGTATTCATTTCAA+AGG + chr3_2:85087485-85087504 None:intergenic 25.0%
! AAATGAATACATACTTGAAC+TGG - chr3_2:85087488-85087507 Msa0432840:intron 25.0%
! GAAAATCATATGAAAACTTC+AGG + chr3_2:85087646-85087665 None:intergenic 25.0%
! AGTAATTTCATGCAAAACAT+TGG - chr3_2:85087674-85087693 Msa0432840:CDS 25.0%
!!! AGAGTGGATTATTTGAAAAT+AGG - chr3_2:85087767-85087786 Msa0432840:CDS 25.0%
!! ACAATATATTTCAAAAGTGC+TGG - chr3_2:85087932-85087951 Msa0432840:intron 25.0%
! CAAATTCTCTCAAATTCTAT+AGG + chr3_2:85088461-85088480 None:intergenic 25.0%
! CTATAGAATTTGAGAGAATT+TGG - chr3_2:85088459-85088478 Msa0432840:intron 25.0%
!!! CTCCTTTCTGATTTATTTTT+TGG - chr3_2:85088487-85088506 Msa0432840:intron 25.0%
! AGCCAAAAAATAAATCAGAA+AGG + chr3_2:85088492-85088511 None:intergenic 25.0%
! AAAAAAATGACTGTTGTGAA+AGG + chr3_2:85088539-85088558 None:intergenic 25.0%
! TCATCAAAGCTTACAAAAAT+TGG + chr3_2:85088807-85088826 None:intergenic 25.0%
GAATAAAGAAAGAGACACAA+AGG - chr3_2:85082596-85082615 Msa0432840:three_prime_UTR 30.0%
CAATGAATGAAATTAGGGTT+AGG + chr3_2:85082714-85082733 None:intergenic 30.0%
! AATCATGTTTTCCCTCTTTA+TGG - chr3_2:85082970-85082989 Msa0432840:intron 30.0%
ACAACTGATGAAGAATTTCT+TGG + chr3_2:85083140-85083159 None:intergenic 30.0%
! TTCTTTTTCTTATCCAGTGA+CGG + chr3_2:85083271-85083290 None:intergenic 30.0%
CTGGATAAGAAAAAGAATGT+AGG - chr3_2:85083274-85083293 Msa0432840:intron 30.0%
TAGTAATAATTCCAGCATAG+GGG + chr3_2:85083429-85083448 None:intergenic 30.0%
GTAGTAATAATTCCAGCATA+GGG + chr3_2:85083430-85083449 None:intergenic 30.0%
AGTAGTAATAATTCCAGCAT+AGG + chr3_2:85083431-85083450 None:intergenic 30.0%
!!! CAGTTGTTTTTCTACGAATT+TGG - chr3_2:85083584-85083603 Msa0432840:CDS 30.0%
AAAATAGTTGCTACATGATC+TGG + chr3_2:85083848-85083867 None:intergenic 30.0%
AAATCAATGTTGCACGAATA+AGG + chr3_2:85083934-85083953 None:intergenic 30.0%
!! TTAATTTGCTACTTATGCAG+TGG - chr3_2:85084035-85084054 Msa0432840:CDS 30.0%
TCAAAACAGAGAGATTGTTT+GGG - chr3_2:85084069-85084088 Msa0432840:CDS 30.0%
! TATGAGTTTTCCTACTTCAA+TGG - chr3_2:85084113-85084132 Msa0432840:CDS 30.0%
! ATGAGTTTTCCTACTTCAAT+GGG - chr3_2:85084114-85084133 Msa0432840:CDS 30.0%
!! AGTTTGCTTTTGATGTTTCT+TGG - chr3_2:85084340-85084359 Msa0432840:CDS 30.0%
!! GTTTGCTTTTGATGTTTCTT+GGG - chr3_2:85084341-85084360 Msa0432840:CDS 30.0%
!! GAAAGTGTTTCAAAAGAACA+AGG + chr3_2:85084411-85084430 None:intergenic 30.0%
ATCCCCAAATACAATAATTG+AGG - chr3_2:85084755-85084774 Msa0432840:intron 30.0%
AGCCTCAATTATTGTATTTG+GGG + chr3_2:85084760-85084779 None:intergenic 30.0%
CAGCCTCAATTATTGTATTT+GGG + chr3_2:85084761-85084780 None:intergenic 30.0%
ACAGCCTCAATTATTGTATT+TGG + chr3_2:85084762-85084781 None:intergenic 30.0%
ACATATTAGTAGTCTGAGAA+AGG - chr3_2:85084821-85084840 Msa0432840:CDS 30.0%
ATCAAGGTAATTGAAAACAC+TGG + chr3_2:85084874-85084893 None:intergenic 30.0%
TTCCAAAAGGTAAAGCTATT+TGG - chr3_2:85084937-85084956 Msa0432840:intron 30.0%
!! AACCAAATAGCTTTACCTTT+TGG + chr3_2:85084942-85084961 None:intergenic 30.0%
ATTTGGTTAAAGCTCATGAA+TGG - chr3_2:85084954-85084973 Msa0432840:intron 30.0%
ATTAACACAGATTACATCTG+AGG - chr3_2:85085213-85085232 Msa0432840:CDS 30.0%
!! GCTTTTTCCTTTGACATAAT+TGG + chr3_2:85085267-85085286 None:intergenic 30.0%
CCACAACATGAACAAAAAAT+TGG + chr3_2:85085307-85085326 None:intergenic 30.0%
!!! CCAATTTTTTGTTCATGTTG+TGG - chr3_2:85085304-85085323 Msa0432840:intron 30.0%
!!! GAGAACCTATTTTTGTAGAA+AGG - chr3_2:85085339-85085358 Msa0432840:CDS 30.0%
GTGGGAAAATTACATTCAAT+GGG - chr3_2:85085419-85085438 Msa0432840:CDS 30.0%
TGGGAAAATTACATTCAATG+GGG - chr3_2:85085420-85085439 Msa0432840:CDS 30.0%
CTACAACAACAAAAGAGATT+TGG - chr3_2:85085638-85085657 Msa0432840:CDS 30.0%
! AAATTAGCAGCTTTTGGTAA+AGG + chr3_2:85085729-85085748 None:intergenic 30.0%
! TTACCAAAAGCTGCTAATTT+TGG - chr3_2:85085729-85085748 Msa0432840:CDS 30.0%
! GGAGTAGATATATGCATTTT+TGG - chr3_2:85086233-85086252 Msa0432840:intron 30.0%
CAATATCTCATGGTAAACAA+AGG + chr3_2:85086387-85086406 None:intergenic 30.0%
! CTTTGTTTACCATGAGATAT+TGG - chr3_2:85086385-85086404 Msa0432840:intron 30.0%
TATTCTTCCTATCATCAGAT+TGG - chr3_2:85086478-85086497 Msa0432840:intron 30.0%
! CCTTGATTTTTGTAAGAAAC+GGG - chr3_2:85086504-85086523 Msa0432840:intron 30.0%
! CTTGATTTTTGTAAGAAACG+GGG - chr3_2:85086505-85086524 Msa0432840:intron 30.0%
ATAAAGATTCAGTGGTTACA+TGG + chr3_2:85086763-85086782 None:intergenic 30.0%
TTCTTTGTTCCTACTGAAAA+AGG - chr3_2:85086870-85086889 Msa0432840:CDS 30.0%
TCTTTGTTCCTACTGAAAAA+GGG - chr3_2:85086871-85086890 Msa0432840:CDS 30.0%
!! ATGGTCTTTAAAGCTCTATT+TGG + chr3_2:85087029-85087048 None:intergenic 30.0%
!! AAATAGAGCTTTAAAGACCA+TGG - chr3_2:85087028-85087047 Msa0432840:CDS 30.0%
!! AATAGAGCTTTAAAGACCAT+GGG - chr3_2:85087029-85087048 Msa0432840:CDS 30.0%
! GTTGATGAAAGTAAAAGACA+AGG + chr3_2:85087116-85087135 None:intergenic 30.0%
AATTGAGGGGAAAAAAGAAA+AGG + chr3_2:85087269-85087288 None:intergenic 30.0%
! TTTTCCCCTCAATTTTCATT+AGG - chr3_2:85087275-85087294 Msa0432840:CDS 30.0%
TATGTATTCATTTCAAAGGG+AGG + chr3_2:85087481-85087500 None:intergenic 30.0%
TGCATTGAGTGCAATAAAAA+AGG - chr3_2:85087514-85087533 Msa0432840:intron 30.0%
! CATATGAAAACTTCAGGTTT+AGG + chr3_2:85087640-85087659 None:intergenic 30.0%
GATATCATTATGCTTAGTGT+TGG + chr3_2:85087740-85087759 None:intergenic 30.0%
TTTCAAATAATCCACTCTCA+AGG + chr3_2:85087765-85087784 None:intergenic 30.0%
CAAACTGAAATTGATACTTC+TGG + chr3_2:85087813-85087832 None:intergenic 30.0%
GATCATCATTGATGAATACT+TGG + chr3_2:85087851-85087870 None:intergenic 30.0%
! TTCTTGATTTGAGAACAGTT+TGG + chr3_2:85088279-85088298 None:intergenic 30.0%
!!! TCACAACAGTCATTTTTTTG+TGG - chr3_2:85088540-85088559 Msa0432840:intron 30.0%
TTAACTTCTTACAGGAAGGA+GGG + chr3_2:85082570-85082589 None:intergenic 35.0%
TAAAGAAAGAGACACAAAGG+AGG - chr3_2:85082599-85082618 Msa0432840:three_prime_UTR 35.0%
AAAGAAAGAGACACAAAGGA+GGG - chr3_2:85082600-85082619 Msa0432840:three_prime_UTR 35.0%
AGGGTTAGGGTTTAAGAATT+GGG + chr3_2:85082700-85082719 None:intergenic 35.0%
TAGGGTTAGGGTTTAAGAAT+TGG + chr3_2:85082701-85082720 None:intergenic 35.0%
GTGCTTAATTGACAGAATAC+AGG + chr3_2:85083565-85083584 None:intergenic 35.0%
! TGTTTTTCTACGAATTTGGC+AGG - chr3_2:85083588-85083607 Msa0432840:CDS 35.0%
GCAGGTCATGAACAATAAAA+GGG + chr3_2:85083723-85083742 None:intergenic 35.0%
ATTGCTTCCACCATATGAAA+CGG + chr3_2:85083812-85083831 None:intergenic 35.0%
CCATTATTTGCGTGTTTCAA+AGG + chr3_2:85083871-85083890 None:intergenic 35.0%
!! CCTTTGAAACACGCAAATAA+TGG - chr3_2:85083868-85083887 Msa0432840:intron 35.0%
CAAAGAAAGAAGCTCAAAGT+CGG + chr3_2:85083972-85083991 None:intergenic 35.0%
GTCAAAACAGAGAGATTGTT+TGG - chr3_2:85084068-85084087 Msa0432840:CDS 35.0%
CAAAACAGAGAGATTGTTTG+GGG - chr3_2:85084070-85084089 Msa0432840:CDS 35.0%
AACTCATAGACTCGTTATTC+TGG + chr3_2:85084101-85084120 None:intergenic 35.0%
! ATTCCCTAAACTTGTTTCAG+CGG - chr3_2:85084170-85084189 Msa0432840:intron 35.0%
TATCCGCTGAAACAAGTTTA+GGG + chr3_2:85084176-85084195 None:intergenic 35.0%
ATATCCGCTGAAACAAGTTT+AGG + chr3_2:85084177-85084196 None:intergenic 35.0%
ACTTGTTTCAGCGGATATTT+CGG - chr3_2:85084179-85084198 Msa0432840:intron 35.0%
TGCTTAGAATTGGAAGATAC+AGG - chr3_2:85084234-85084253 Msa0432840:intron 35.0%
GCTTAGAATTGGAAGATACA+GGG - chr3_2:85084235-85084254 Msa0432840:intron 35.0%
TACGAAAAGACGGAAAATGA+CGG - chr3_2:85084317-85084336 Msa0432840:intron 35.0%
! TGATCAATCGACTTACAAGA+TGG - chr3_2:85084380-85084399 Msa0432840:CDS 35.0%
GAAATACAGCAGAAACTCAA+TGG - chr3_2:85084500-85084519 Msa0432840:CDS 35.0%
!! AGATATTGATGACGATGAAG+AGG - chr3_2:85084560-85084579 Msa0432840:CDS 35.0%
! TTTTATCGTTTATCCCATCC+TGG + chr3_2:85084692-85084711 None:intergenic 35.0%
ACGTGTGAACAAATCAATCA+AGG + chr3_2:85084787-85084806 None:intergenic 35.0%
AGTCATACGTAAACAGATCA+AGG + chr3_2:85084890-85084909 None:intergenic 35.0%
CATGAACCAACTATTCCAAA+AGG - chr3_2:85084924-85084943 Msa0432840:CDS 35.0%
!!! GCTTTACCTTTTGGAATAGT+TGG + chr3_2:85084933-85084952 None:intergenic 35.0%
ACACATGCCAATTATGTCAA+AGG - chr3_2:85085257-85085276 Msa0432840:intron 35.0%
CATGAACAAAAAATTGGCAC+TGG + chr3_2:85085301-85085320 None:intergenic 35.0%
GAAGAAGAATTTGATGCACA+GGG - chr3_2:85085361-85085380 Msa0432840:CDS 35.0%
GGTGGGAAAATTACATTCAA+TGG - chr3_2:85085418-85085437 Msa0432840:CDS 35.0%
!! ATGACTGTTGTTTCTTCTAG+TGG - chr3_2:85085568-85085587 Msa0432840:intron 35.0%
!! TGACTGTTGTTTCTTCTAGT+GGG - chr3_2:85085569-85085588 Msa0432840:intron 35.0%
! ATTTCTTTTAAGCGGCATAC+AGG + chr3_2:85085687-85085706 None:intergenic 35.0%
!! AAGACTTTTTGAGCGTCTTA+TGG - chr3_2:85085797-85085816 Msa0432840:CDS 35.0%
! GAAAGTGAATAAGCTGTTTC+TGG - chr3_2:85086031-85086050 Msa0432840:CDS 35.0%
ATCTATAAGAGAATTCGGCA+GGG + chr3_2:85086079-85086098 None:intergenic 35.0%
TAGATCAAGAGTAAGTTCAG+TGG - chr3_2:85086094-85086113 Msa0432840:CDS 35.0%
!! AGTTCTGAAGATGCAATTTG+TGG + chr3_2:85086144-85086163 None:intergenic 35.0%
! ATGGTAAACAAAGGTACGAA+GGG + chr3_2:85086378-85086397 None:intergenic 35.0%
! AAGGTATCCAATCTGATGAT+AGG + chr3_2:85086488-85086507 None:intergenic 35.0%
CCCGTTTCTTACAAAAATCA+AGG + chr3_2:85086507-85086526 None:intergenic 35.0%
! TAATCATCCCCTTTTCTTGA+AGG + chr3_2:85086562-85086581 None:intergenic 35.0%
ATTCAACACAGAGACACATA+AGG + chr3_2:85086661-85086680 None:intergenic 35.0%
GGGAAAAAAGAAAAGGAAGA+AGG + chr3_2:85087262-85087281 None:intergenic 35.0%
CCAACCTAATGAAAATTGAG+GGG + chr3_2:85087282-85087301 None:intergenic 35.0%
GCCAACCTAATGAAAATTGA+GGG + chr3_2:85087283-85087302 None:intergenic 35.0%
CACTGAATGCAAGAAATTTC+AGG - chr3_2:85087404-85087423 Msa0432840:intron 35.0%
! AGAAATTTCAGGAGTGTGAA+AGG - chr3_2:85087415-85087434 Msa0432840:intron 35.0%
AAATGTGTGCATCAGAACTA+TGG + chr3_2:85087578-85087597 None:intergenic 35.0%
GATGCACACATTTCAAAGAA+TGG - chr3_2:85087585-85087604 Msa0432840:CDS 35.0%
! TCATTATGCTTAGTGTTGGA+GGG + chr3_2:85087736-85087755 None:intergenic 35.0%
! ATCATTATGCTTAGTGTTGG+AGG + chr3_2:85087737-85087756 None:intergenic 35.0%
AATGATATCATCCTTGAGAG+TGG - chr3_2:85087751-85087770 Msa0432840:CDS 35.0%
ACTTCTGGCAAAAACTCAAA+AGG + chr3_2:85087798-85087817 None:intergenic 35.0%
TCATTGATGAATACTTGGCA+CGG + chr3_2:85087846-85087865 None:intergenic 35.0%
TAGGGTTGTTTAAATGGTAG+AGG + chr3_2:85087873-85087892 None:intergenic 35.0%
TTTGAGTCAACTTGTGTTCA+TGG + chr3_2:85088023-85088042 None:intergenic 35.0%
TCAACACCACTATGTCAATT+TGG - chr3_2:85088069-85088088 Msa0432840:intron 35.0%
CAACACCACTATGTCAATTT+GGG - chr3_2:85088070-85088089 Msa0432840:intron 35.0%
TCGTGAGTCAAATGAGAAAA+CGG - chr3_2:85088095-85088114 Msa0432840:intron 35.0%
ACGGTATGAACTTAATTCTC+AGG - chr3_2:85088114-85088133 Msa0432840:intron 35.0%
GGTGCAAAATTCGAGTAAAT+CGG - chr3_2:85088319-85088338 Msa0432840:CDS 35.0%
GTGCAAAATTCGAGTAAATC+GGG - chr3_2:85088320-85088339 Msa0432840:CDS 35.0%
TGCAAAATTCGAGTAAATCG+GGG - chr3_2:85088321-85088340 Msa0432840:CDS 35.0%
! ACCATATCTTTTTACAGTGC+TGG + chr3_2:85088350-85088369 None:intergenic 35.0%
TAACTTCTTACAGGAAGGAG+GGG + chr3_2:85082569-85082588 None:intergenic 40.0%
CTTAACTTCTTACAGGAAGG+AGG + chr3_2:85082571-85082590 None:intergenic 40.0%
CTGCTTAACTTCTTACAGGA+AGG + chr3_2:85082574-85082593 None:intergenic 40.0%
TCCTGTAAGAAGTTAAGCAG+AGG - chr3_2:85082574-85082593 Msa0432840:three_prime_UTR 40.0%
TCCTCTGCTTAACTTCTTAC+AGG + chr3_2:85082578-85082597 None:intergenic 40.0%
GGGTTAGGGTTTAAGAATTG+GGG + chr3_2:85082699-85082718 None:intergenic 40.0%
! CTGAACTTGGTGGGAATATT+TGG - chr3_2:85083105-85083124 Msa0432840:CDS 40.0%
TGGATTACTTACATGTGGAC+TGG + chr3_2:85083201-85083220 None:intergenic 40.0%
CCTACTGGATTACTTACATG+TGG + chr3_2:85083206-85083225 None:intergenic 40.0%
CCACATGTAAGTAATCCAGT+AGG - chr3_2:85083203-85083222 Msa0432840:CDS 40.0%
TAATCCAGTAGGATTCTCCA+CGG - chr3_2:85083214-85083233 Msa0432840:CDS 40.0%
! TGACGGTTGTATGTCATTTC+GGG + chr3_2:85083254-85083273 None:intergenic 40.0%
! GTGACGGTTGTATGTCATTT+CGG + chr3_2:85083255-85083274 None:intergenic 40.0%
AAATGACATACAACCGTCAC+TGG - chr3_2:85083255-85083274 Msa0432840:intron 40.0%
! TTTTCTACGAATTTGGCAGG+AGG - chr3_2:85083591-85083610 Msa0432840:CDS 40.0%
GTTATTATGGCGTTCCAGAA+GGG - chr3_2:85083686-85083705 Msa0432840:CDS 40.0%
GGCAGGTCATGAACAATAAA+AGG + chr3_2:85083724-85083743 None:intergenic 40.0%
ACACACATATCAGCAAGTAG+GGG + chr3_2:85083775-85083794 None:intergenic 40.0%
CACACACATATCAGCAAGTA+GGG + chr3_2:85083776-85083795 None:intergenic 40.0%
CCATATGAAACGGGTAAGTT+AGG + chr3_2:85083802-85083821 None:intergenic 40.0%
CCTAACTTACCCGTTTCATA+TGG - chr3_2:85083799-85083818 Msa0432840:intron 40.0%
AACTTACCCGTTTCATATGG+TGG - chr3_2:85083802-85083821 Msa0432840:intron 40.0%
TTGCTTCCACCATATGAAAC+GGG + chr3_2:85083811-85083830 None:intergenic 40.0%
! TTCATATGGTGGAAGCAATC+TGG - chr3_2:85083813-85083832 Msa0432840:CDS 40.0%
! ATTTGCTACTTATGCAGTGG+AGG - chr3_2:85084038-85084057 Msa0432840:CDS 40.0%
ATGGACTTTCCCATTGAAGT+AGG + chr3_2:85084126-85084145 None:intergenic 40.0%
ACTCGTGCTAGGAAAAAGAT+TGG + chr3_2:85084211-85084230 None:intergenic 40.0%
CACGAGTTCATGCTTAGAAT+TGG - chr3_2:85084224-85084243 Msa0432840:intron 40.0%
! TTCTGAAAATCCAACTCCTG+GGG + chr3_2:85084270-85084289 None:intergenic 40.0%
!! GTTCTGAAAATCCAACTCCT+GGG + chr3_2:85084271-85084290 None:intergenic 40.0%
!! TGTTCTGAAAATCCAACTCC+TGG + chr3_2:85084272-85084291 None:intergenic 40.0%
! TCTTTTCGTAGGTTGTAGCA+TGG + chr3_2:85084307-85084326 None:intergenic 40.0%
TGCTACAACCTACGAAAAGA+CGG - chr3_2:85084307-85084326 Msa0432840:intron 40.0%
!! GTCATTTTCCGTCTTTTCGT+AGG + chr3_2:85084318-85084337 None:intergenic 40.0%
TTAAGTTCCTTCCTGAGAGT+AGG + chr3_2:85084540-85084559 None:intergenic 40.0%
TATTGTTCATGAGGGTGAAG+AGG - chr3_2:85084641-85084660 Msa0432840:intron 40.0%
TCTGAGAAAGGAATCTGTTC+AGG - chr3_2:85084833-85084852 Msa0432840:CDS 40.0%
TAATTGAAAACACTGGCAGG+TGG + chr3_2:85084867-85084886 None:intergenic 40.0%
AGGTAATTGAAAACACTGGC+AGG + chr3_2:85084870-85084889 None:intergenic 40.0%
AACACAGATTACATCTGAGG+AGG - chr3_2:85085216-85085235 Msa0432840:intron 40.0%
GGAAGAAGAATTTGATGCAC+AGG - chr3_2:85085360-85085379 Msa0432840:CDS 40.0%
! GCACCAAAATTAGCAGCTTT+TGG + chr3_2:85085735-85085754 None:intergenic 40.0%
TTATGGAAGAGAGAGCAAAC+TGG - chr3_2:85085814-85085833 Msa0432840:CDS 40.0%
TATGGAAGAGAGAGCAAACT+GGG - chr3_2:85085815-85085834 Msa0432840:CDS 40.0%
CAAACTGGGAGAAAGTTGAA+GGG - chr3_2:85085829-85085848 Msa0432840:CDS 40.0%
AGGGAACGAGAATCTTGATA+AGG - chr3_2:85085848-85085867 Msa0432840:intron 40.0%
GATCTATAAGAGAATTCGGC+AGG + chr3_2:85086080-85086099 None:intergenic 40.0%
CTTCTGTTTCAGCAGATTGA+AGG - chr3_2:85086212-85086231 Msa0432840:intron 40.0%
! ATGTGTACACAACGCTGATT+TGG + chr3_2:85086296-85086315 None:intergenic 40.0%
! CATGGTAAACAAAGGTACGA+AGG + chr3_2:85086379-85086398 None:intergenic 40.0%
GAGAAAGAAAGACTGACCAA+CGG + chr3_2:85086639-85086658 None:intergenic 40.0%
!!! TTGGAGTTCCCTTTTTCAGT+AGG + chr3_2:85086882-85086901 None:intergenic 40.0%
TACTGAAAAAGGGAACTCCA+AGG - chr3_2:85086881-85086900 Msa0432840:CDS 40.0%
TCTCGTTTGCCATACTTTGA+TGG - chr3_2:85086912-85086931 Msa0432840:CDS 40.0%
CAGTAGTCTCCATCAAAGTA+TGG + chr3_2:85086924-85086943 None:intergenic 40.0%
CATACTTTGATGGAGACTAC+TGG - chr3_2:85086922-85086941 Msa0432840:CDS 40.0%
CTACTGGTGTGGTTATGTTA+TGG - chr3_2:85086938-85086957 Msa0432840:CDS 40.0%
AGGACCATTGAAAAAGAGAG+CGG - chr3_2:85086969-85086988 Msa0432840:CDS 40.0%
TCTTTGGCAGTGTCTTTAGA+AGG + chr3_2:85087065-85087084 None:intergenic 40.0%
TTGCATCACCAGAATGTCTT+TGG + chr3_2:85087081-85087100 None:intergenic 40.0%
TTCCCTTTATAGTCACCCAA+TGG - chr3_2:85087139-85087158 Msa0432840:CDS 40.0%
TCCCTTTATAGTCACCCAAT+GGG - chr3_2:85087140-85087159 Msa0432840:CDS 40.0%
TCCCATTGGGTGACTATAAA+GGG + chr3_2:85087144-85087163 None:intergenic 40.0%
ATCCCATTGGGTGACTATAA+AGG + chr3_2:85087145-85087164 None:intergenic 40.0%
! CCCCTCAATTTTCATTAGGT+TGG - chr3_2:85087279-85087298 Msa0432840:CDS 40.0%
GGCCAACCTAATGAAAATTG+AGG + chr3_2:85087284-85087303 None:intergenic 40.0%
CCAAAAGATATTGCCTACCA+GGG - chr3_2:85087302-85087321 Msa0432840:CDS 40.0%
! ATGATGAAGTTTTCCCTGGT+AGG + chr3_2:85087318-85087337 None:intergenic 40.0%
! AGCTATGATGAAGTTTTCCC+TGG + chr3_2:85087322-85087341 None:intergenic 40.0%
ACACATTTCAAAGAATGGCG+AGG - chr3_2:85087590-85087609 Msa0432840:CDS 40.0%
!!! TTGGATTGTGTGCTGTTTTC+AGG - chr3_2:85087693-85087712 Msa0432840:CDS 40.0%
CCAGAGTAGGGTTGTTTAAA+TGG + chr3_2:85087879-85087898 None:intergenic 40.0%
CCATTTAAACAACCCTACTC+TGG - chr3_2:85087876-85087895 Msa0432840:intron 40.0%
CTTATAGCAAGCAGAGCAAA+TGG + chr3_2:85087983-85088002 None:intergenic 40.0%
!! CATTTGCTCTGCTTGCTATA+AGG - chr3_2:85087981-85088000 Msa0432840:CDS 40.0%
!! TCTGCTTGCTATAAGGATAG+AGG - chr3_2:85087988-85088007 Msa0432840:CDS 40.0%
CGATTCCCAAATTGACATAG+TGG + chr3_2:85088078-85088097 None:intergenic 40.0%
GAACAGTTTGGATAAGAGCA+TGG + chr3_2:85088267-85088286 None:intergenic 40.0%
GCCAGCACTGTAAAAAGATA+TGG - chr3_2:85088346-85088365 Msa0432840:exon 40.0%
AATGTAGAATACCACGTTGC+AGG - chr3_2:85088409-85088428 Msa0432840:intron 40.0%
AAACAACGCATTCCGAATCT+TGG - chr3_2:85088639-85088658 Msa0432840:intron 40.0%
TTCTTGACGCGCCATAAAGA+GGG + chr3_2:85082984-85083003 None:intergenic 45.0%
AGCTGAAAAGATGCTTGCGA+AGG - chr3_2:85083079-85083098 Msa0432840:CDS 45.0%
GCTGAAAAGATGCTTGCGAA+GGG - chr3_2:85083080-85083099 Msa0432840:CDS 45.0%
! ACTTACCACTGCTGCTTCAA+AGG - chr3_2:85083448-85083467 Msa0432840:CDS 45.0%
!! ACAAACCTTTGAAGCAGCAG+TGG + chr3_2:85083456-85083475 None:intergenic 45.0%
GCAGGAGGAATATATGAACC+TGG - chr3_2:85083606-85083625 Msa0432840:CDS 45.0%
! TCTGATGCCGCTGGTTATTA+TGG - chr3_2:85083673-85083692 Msa0432840:CDS 45.0%
TGGAACGCCATAATAACCAG+CGG + chr3_2:85083683-85083702 None:intergenic 45.0%
GGTTATTATGGCGTTCCAGA+AGG - chr3_2:85083685-85083704 Msa0432840:CDS 45.0%
ACACATATCAGCAAGTAGGG+GGG + chr3_2:85083773-85083792 None:intergenic 45.0%
CACACATATCAGCAAGTAGG+GGG + chr3_2:85083774-85083793 None:intergenic 45.0%
GCACACACATATCAGCAAGT+AGG + chr3_2:85083777-85083796 None:intergenic 45.0%
GTTGCTACATGATCTGGTGT+TGG + chr3_2:85083842-85083861 None:intergenic 45.0%
TCTAAGCATGAACTCGTGCT+AGG + chr3_2:85084222-85084241 None:intergenic 45.0%
CAGTTAGAGACTATCGAGTC+TGG - chr3_2:85084444-85084463 Msa0432840:CDS 45.0%
! TCTGGAATGATTCCCTCGAA+AGG - chr3_2:85084462-85084481 Msa0432840:CDS 45.0%
CCAGATTCTAAGCCTTTCGA+GGG + chr3_2:85084477-85084496 None:intergenic 45.0%
TCAACAGTAAGCCTACTCTC+AGG - chr3_2:85084526-85084545 Msa0432840:CDS 45.0%
GACGATGAAGAGGACATACA+AGG - chr3_2:85084570-85084589 Msa0432840:CDS 45.0%
TATCCCATCCTGGTTGAATC+CGG + chr3_2:85084682-85084701 None:intergenic 45.0%
ATTACATCTGAGGAGGAAGC+AGG - chr3_2:85085223-85085242 Msa0432840:intron 45.0%
!!! AGCTGCTAATTTTGGTGCCA+AGG - chr3_2:85085737-85085756 Msa0432840:CDS 45.0%
TTCTAAGTGGTCACTGAGCA+TGG + chr3_2:85085775-85085794 None:intergenic 45.0%
GCAAACTGGGAGAAAGTTGA+AGG - chr3_2:85085828-85085847 Msa0432840:CDS 45.0%
! GTTTCTGGACATCATTCCAG+AGG - chr3_2:85086046-85086065 Msa0432840:CDS 45.0%
!!! CATTTTTGGAATGTACGCCC+AGG - chr3_2:85086247-85086266 Msa0432840:intron 45.0%
!! CTGATTTGGATTGCCGCATT+CGG + chr3_2:85086282-85086301 None:intergenic 45.0%
CCACTCTTTGTTCTTCTCTC+AGG + chr3_2:85086350-85086369 None:intergenic 45.0%
CCTGAGAGAAGAACAAAGAG+TGG - chr3_2:85086347-85086366 Msa0432840:intron 45.0%
CCTGTGCTCCTTCAAGAAAA+GGG - chr3_2:85086551-85086570 Msa0432840:intron 45.0%
CTGTGCTCCTTCAAGAAAAG+GGG - chr3_2:85086552-85086571 Msa0432840:intron 45.0%
! TTCGGAGTCTTTTGCTCTTC+AGG + chr3_2:85086601-85086620 None:intergenic 45.0%
CGGCGTAGCTTATCATTCTT+CGG + chr3_2:85086619-85086638 None:intergenic 45.0%
AGAATGATAAGCTACGCCGT+TGG - chr3_2:85086620-85086639 Msa0432840:CDS 45.0%
CAAACGAGAAGTTGTCACCT+TGG + chr3_2:85086901-85086920 None:intergenic 45.0%
TTTGATGGAGACTACTGGTG+TGG - chr3_2:85086927-85086946 Msa0432840:CDS 45.0%
GTTATGTTATGGAAGCAGCC+AGG - chr3_2:85086949-85086968 Msa0432840:CDS 45.0%
!!! GCTCTCTTTTTCAATGGTCC+TGG + chr3_2:85086970-85086989 None:intergenic 45.0%
ACCATTGAAAAAGAGAGCGG+AGG - chr3_2:85086972-85086991 Msa0432840:CDS 45.0%
!!! TCCTCCGCTCTCTTTTTCAA+TGG + chr3_2:85086976-85086995 None:intergenic 45.0%
! GGCAGTGTCTTTAGAAGGAT+TGG + chr3_2:85087060-85087079 None:intergenic 45.0%
AGACACTGCCAAAGACATTC+TGG - chr3_2:85087070-85087089 Msa0432840:CDS 45.0%
GCCAAAAGATATTGCCTACC+AGG - chr3_2:85087301-85087320 Msa0432840:CDS 45.0%
! CCCTGGTAGGCAATATCTTT+TGG + chr3_2:85087305-85087324 None:intergenic 45.0%
TGCCATGAAGTGATAGCATC+TGG - chr3_2:85087366-85087385 Msa0432840:intron 45.0%
GCCATGAAGTGATAGCATCT+GGG - chr3_2:85087367-85087386 Msa0432840:intron 45.0%
TCCCAGATGCTATCACTTCA+TGG + chr3_2:85087371-85087390 None:intergenic 45.0%
TTGATGAATACTTGGCACGG+CGG + chr3_2:85087843-85087862 None:intergenic 45.0%
TTCCAACAGTCACCAGAGTA+GGG + chr3_2:85087891-85087910 None:intergenic 45.0%
TTTCCAACAGTCACCAGAGT+AGG + chr3_2:85087892-85087911 None:intergenic 45.0%
GCAGAGCAAATGGTACATTC+TGG + chr3_2:85087973-85087992 None:intergenic 45.0%
GCATGGTTCAGCATTAGTTG+CGG + chr3_2:85088250-85088269 None:intergenic 45.0%
AGCTATTCTCTCATGCTCGT+AGG - chr3_2:85088298-85088317 Msa0432840:CDS 45.0%
TTATACTAACTGCCCACTCC+AGG - chr3_2:85088370-85088389 Msa0432840:intron 45.0%
GTCTTTGCAATTCCTGGAGT+GGG + chr3_2:85088385-85088404 None:intergenic 45.0%
AGTCTTTGCAATTCCTGGAG+TGG + chr3_2:85088386-85088405 None:intergenic 45.0%
CTCCAGGAATTGCAAAGACT+CGG - chr3_2:85088386-85088405 Msa0432840:intron 45.0%
TTCCGAGTCTTTGCAATTCC+TGG + chr3_2:85088391-85088410 None:intergenic 45.0%
! GCTGACGCTGTTGTTGTTGT+GGG + chr3_2:85082626-85082645 None:intergenic 50.0%
AACAACAGCGTCAGCGATAC+AGG - chr3_2:85082631-85082650 Msa0432840:three_prime_UTR 50.0%
GTTCTTGACGCGCCATAAAG+AGG + chr3_2:85082985-85083004 None:intergenic 50.0%
TGGCGCGTCAAGAACATTGT+TGG - chr3_2:85082990-85083009 Msa0432840:intron 50.0%
!! CTTGCGAAGGGTTCTGAACT+TGG - chr3_2:85083092-85083111 Msa0432840:CDS 50.0%
!! CGAAGGGTTCTGAACTTGGT+GGG - chr3_2:85083096-85083115 Msa0432840:CDS 50.0%
TGAGCAATTTGCCCCTATGC+TGG - chr3_2:85083415-85083434 Msa0432840:CDS 50.0%
!! TACGCTGATTCAACGTCTCC+AGG + chr3_2:85083627-85083646 None:intergenic 50.0%
! TCAGCGTATGCAAGCTCTAG+TGG - chr3_2:85083639-85083658 Msa0432840:CDS 50.0%
! CAGCGTATGCAAGCTCTAGT+GGG - chr3_2:85083640-85083659 Msa0432840:CDS 50.0%
GTTTCTAAGTCTGATGCCGC+TGG - chr3_2:85083664-85083683 Msa0432840:CDS 50.0%
GAACCATCATCAGGAGAGCA+AGG + chr3_2:85083745-85083764 None:intergenic 50.0%
!! GGGGTTGATGAACCATCATC+AGG + chr3_2:85083754-85083773 None:intergenic 50.0%
TACAGGGCGAAATAAACCCC+AGG - chr3_2:85084251-85084270 Msa0432840:intron 50.0%
GCGAAATAAACCCCAGGAGT+TGG - chr3_2:85084257-85084276 Msa0432840:intron 50.0%
CCCTCGAAAGGCTTAGAATC+TGG - chr3_2:85084474-85084493 Msa0432840:CDS 50.0%
GCCAGATTCTAAGCCTTTCG+AGG + chr3_2:85084478-85084497 None:intergenic 50.0%
CAGTAAGCCTACTCTCAGGA+AGG - chr3_2:85084530-85084549 Msa0432840:CDS 50.0%
GAGGACATACAAGGCAGAAC+TGG - chr3_2:85084579-85084598 Msa0432840:CDS 50.0%
AGGCAGAACTGGATTCATCC+AGG - chr3_2:85084590-85084609 Msa0432840:CDS 50.0%
CAGAACTGGATTCATCCAGG+CGG - chr3_2:85084593-85084612 Msa0432840:CDS 50.0%
AGAACTGGATTCATCCAGGC+GGG - chr3_2:85084594-85084613 Msa0432840:CDS 50.0%
! TTTTAGCATTTACCCCCGCC+TGG + chr3_2:85084611-85084630 None:intergenic 50.0%
GAGGGTGAAGAGGACATTCA+AGG - chr3_2:85084651-85084670 Msa0432840:intron 50.0%
GAGGACATTCAAGGCAGAAC+CGG - chr3_2:85084660-85084679 Msa0432840:intron 50.0%
AGAACCGGATTCAACCAGGA+TGG - chr3_2:85084675-85084694 Msa0432840:intron 50.0%
GAACCGGATTCAACCAGGAT+GGG - chr3_2:85084676-85084695 Msa0432840:intron 50.0%
CATGGTTCTTGGCAAGTCCT+TGG + chr3_2:85085757-85085776 None:intergenic 50.0%
TGGTCACTGAGCATGGTTCT+TGG + chr3_2:85085768-85085787 None:intergenic 50.0%
! TCGGCAGGGTAATTTTCCTC+TGG + chr3_2:85086065-85086084 None:intergenic 50.0%
GCCTGTGCTCCTTCAAGAAA+AGG - chr3_2:85086550-85086569 Msa0432840:intron 50.0%
!! CCCTTTTCTTGAAGGAGCAC+AGG + chr3_2:85086554-85086573 None:intergenic 50.0%
! AGAAGGATTGGCATGTCCCA+TGG + chr3_2:85087048-85087067 None:intergenic 50.0%
TGATAGCATCTGGGAAGCGA+TGG - chr3_2:85087376-85087395 Msa0432840:intron 50.0%
CGAGGTGCATACACTATGTC+AGG - chr3_2:85087608-85087627 Msa0432840:CDS 50.0%
AACCCTACTCTGGTGACTGT+TGG - chr3_2:85087886-85087905 Msa0432840:intron 50.0%
! CGCTGACGCTGTTGTTGTTG+TGG + chr3_2:85082627-85082646 None:intergenic 55.0%
!! GCGAAGGGTTCTGAACTTGG+TGG - chr3_2:85083095-85083114 Msa0432840:CDS 55.0%
CAGTCCGTGGAGAATCCTAC+TGG + chr3_2:85083221-85083240 None:intergenic 55.0%
CAGTAGGATTCTCCACGGAC+TGG - chr3_2:85083219-85083238 Msa0432840:intron 55.0%
GGGTCAGATAGTCTCCCTTC+TGG + chr3_2:85083703-85083722 None:intergenic 55.0%
CATCATCAGGAGAGCAAGGC+AGG + chr3_2:85083741-85083760 None:intergenic 55.0%
CTGCCTTGCTCTCCTGATGA+TGG - chr3_2:85083739-85083758 Msa0432840:intron 55.0%
GAACTGGATTCATCCAGGCG+GGG - chr3_2:85084595-85084614 Msa0432840:CDS 55.0%
AACTGGATTCATCCAGGCGG+GGG - chr3_2:85084596-85084615 Msa0432840:CDS 55.0%
AGGCAGAACCGGATTCAACC+AGG - chr3_2:85084671-85084690 Msa0432840:intron 55.0%
CATGTTGTGGCGTACGCATC+AGG - chr3_2:85085317-85085336 Msa0432840:intron 55.0%
GGAATGTACGCCCAGGAGTT+CGG - chr3_2:85086254-85086273 Msa0432840:intron 55.0%
CACGCAGATGCTGAAACTGC+TGG - chr3_2:85088197-85088216 Msa0432840:CDS 55.0%
ACAGTCACACACCTGCAACG+TGG + chr3_2:85088423-85088442 None:intergenic 55.0%
ACGCATTCCGAATCTTGGCG+TGG - chr3_2:85088644-85088663 Msa0432840:intron 55.0%
TGCAGCTCCACGCCAAGATT+CGG + chr3_2:85088654-85088673 None:intergenic 55.0%
! GGGATGATAACGCCAGTCCG+TGG + chr3_2:85083234-85083253 None:intergenic 60.0%
GCATTCGGAGCCGAACTCCT+GGG + chr3_2:85086267-85086286 None:intergenic 60.0%
CAGGAGTTCGGCTCCGAATG+CGG - chr3_2:85086266-85086285 Msa0432840:intron 60.0%
CGCATTCGGAGCCGAACTCC+TGG + chr3_2:85086268-85086287 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 85082535 85088904 85082535 ID=Msa0432840;Name=Msa0432840
chr3_2 mRNA 85082535 85088904 85082535 ID=Msa0432840-mRNA-1;Parent=Msa0432840;Name=Msa0432840-mRNA-1;_AED=0.11;_eAED=0.11;_QI=148|1|1|1|0.93|0.87|16|195|1206
chr3_2 exon 85082535 85082826 85082535 ID=Msa0432840-mRNA-1:exon:24205;Parent=Msa0432840-mRNA-1
chr3_2 exon 85083009 85083235 85083009 ID=Msa0432840-mRNA-1:exon:24204;Parent=Msa0432840-mRNA-1
chr3_2 exon 85083323 85083724 85083323 ID=Msa0432840-mRNA-1:exon:24203;Parent=Msa0432840-mRNA-1
chr3_2 exon 85083810 85083867 85083810 ID=Msa0432840-mRNA-1:exon:24202;Parent=Msa0432840-mRNA-1
chr3_2 exon 85084003 85084142 85084003 ID=Msa0432840-mRNA-1:exon:24201;Parent=Msa0432840-mRNA-1
chr3_2 exon 85084336 85084639 85084336 ID=Msa0432840-mRNA-1:exon:24200;Parent=Msa0432840-mRNA-1
chr3_2 exon 85084798 85084943 85084798 ID=Msa0432840-mRNA-1:exon:24199;Parent=Msa0432840-mRNA-1
chr3_2 exon 85085033 85085233 85085033 ID=Msa0432840-mRNA-1:exon:24198;Parent=Msa0432840-mRNA-1
chr3_2 exon 85085336 85085464 85085336 ID=Msa0432840-mRNA-1:exon:24197;Parent=Msa0432840-mRNA-1
chr3_2 exon 85085570 85085851 85085570 ID=Msa0432840-mRNA-1:exon:24196;Parent=Msa0432840-mRNA-1
chr3_2 exon 85085938 85086216 85085938 ID=Msa0432840-mRNA-1:exon:24195;Parent=Msa0432840-mRNA-1
chr3_2 exon 85086585 85087384 85086585 ID=Msa0432840-mRNA-1:exon:24194;Parent=Msa0432840-mRNA-1
chr3_2 exon 85087550 85087829 85087550 ID=Msa0432840-mRNA-1:exon:24193;Parent=Msa0432840-mRNA-1
chr3_2 exon 85087970 85088042 85087970 ID=Msa0432840-mRNA-1:exon:24192;Parent=Msa0432840-mRNA-1
chr3_2 exon 85088148 85088380 85088148 ID=Msa0432840-mRNA-1:exon:24191;Parent=Msa0432840-mRNA-1
chr3_2 exon 85088787 85088904 85088787 ID=Msa0432840-mRNA-1:exon:24190;Parent=Msa0432840-mRNA-1
chr3_2 five_prime_UTR 85088787 85088904 85088787 ID=Msa0432840-mRNA-1:five_prime_utr;Parent=Msa0432840-mRNA-1
chr3_2 five_prime_UTR 85088351 85088380 85088351 ID=Msa0432840-mRNA-1:five_prime_utr;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85088148 85088350 85088148 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85087970 85088042 85087970 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85087550 85087829 85087550 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85086585 85087384 85086585 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85085938 85086216 85085938 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85085570 85085851 85085570 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85085336 85085464 85085336 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85085033 85085233 85085033 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85084798 85084943 85084798 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85084336 85084639 85084336 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85084003 85084142 85084003 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85083810 85083867 85083810 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85083323 85083724 85083323 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85083009 85083235 85083009 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 CDS 85082730 85082826 85082730 ID=Msa0432840-mRNA-1:cds;Parent=Msa0432840-mRNA-1
chr3_2 three_prime_UTR 85082535 85082729 85082535 ID=Msa0432840-mRNA-1:three_prime_utr;Parent=Msa0432840-mRNA-1
Gene Sequence

>Msa0432840

ATGCTTGCGAAGGGTTCTGAACTTGGTGGGAATATTTGGAGAGAATTGCCAAGAAATTCTTCATCAGTTGTCTCAAACACTCCGCAAAAGAGATGTTTTGATAAATTATCCAGTCCACATGTAAGTAATCCAGTAGGATTCTCCACGGACTGGCGTTATCATCCCGAAATGACATACAACCGTCACTGGATAAGAAAAAGAATTTTTGAAATCATTCAGAATGAGCAATTTGCCCCTATGCTGGAATTATTACTACTTACCACTGCTGCTTCAAAGGAGGAATATATGAACCTGGAGACGTTGAATCAGCGTATGCAAGCTCTAGTGGGTGTTTCTAAGTCTGATGCCGCTGGTTATTATGGCGTTCCAGAAGGGAGACTATCTGACCCTTTTATTGTTCATGACCTGCCTTGCTCTCCTGATGATGGTTCATCAACCCCCCTACTTGCTGATATGTGTGTGCTTCCTAACTTACCCGTTTCATATGGTGGAAGCAATCTGGATGCCAACACCAGATCATGTAGCAACTATTTTCCTTTGAAACACGCAAATAATGTGGAGGTGAATCTGTCAAAACAGAGAGATTGTTTGGGGTTTATCCAGAATAACGAGTCTATGAGTTTTCCTACTTCAATGGGAAAGTCCATTCAATTTGAAGATTTACATTCGACATTCCCTAAACTTGTTTCAGCGGATATTTCGGAACAATCCAATCTTTTTCCTAGCACGAGTTCATGCTTAGAATTGGAAGATACAGGGCGAAATAAACCCCAGGAGTTGGATTTTCAGAACAGTTTCACTCATGCCATGCTACAACCTACGAAAAGACGGAAAATGACGGAGTTTGCTTTTGATGTTTCTTGGGTTAATGATGCAAGTTCTGATCAATCGACTTACAAGATGGCTCAACCTTGTTCTTTTGAAACACTTTCAGAAGTGCAGCAACAGTTAGAGACTATCGAGTCTGGAATGATTCCCTCGAAAGGCTTAGAATCTGGCATGAAATACAGCAGAAACTCAATGGAAATCAACAGTAAGCCTACTCTCAGGAAGGAACTTAAAGATATTGATGACGATGAAGAGGACATACAAGGCAGAACTGGATTCATCCAGGCGGGGGTAAATGCTAAAAAAGAACTTATTATTGTTCATGAGGGTGAAGAGGACATTCAAGGCAGAACCGGATTCAACCAGGATGGGATAAACGATAAAAAAGAAATCATCGAGTCAAAAGATGATCAAGAGAAGCAAACAAAATCCCCAAATACAATAATTGAGGCTGTTTCCTTGATTGATTTGTTCACACGTGATCAAATAGAAGAACATATTAGTAGTCTGAGAAAGGAATCTGTTCAGATTACATCTGAGGAGGAAGCAGGAATTGATGCAAACACATGCCAATTATGTCAAAGGAAAAAGCTTTACTTTGCACCAGTGCCAATTTTTTGTTCATGTTGTGGCGTACGCATCAGGAGAACCTATTTTTGTAGAAAGGAAGAAGAATTTGATGCACAGGGTTGCATTTGCACCGTGTGTTATAAGAATTCTAAAGGTGGGAAAATTACATTCAATGGGGCATTTGTTTCTAAGACAAATCTCGAAAAAAAGAATAACGATGAAGTTTTTGAAGAACCTTGGGTTGAATGCAATAAATGCAAAAGATGGCAGCATCAAATATGTGCACTCTACAACAACAAAAGAGATTTGGATTGCAGTGCTGAGTATATATGTCCTGTATGCCGCTTAAAAGAAATTAAAAACGGAATTCATGTTCCTTTACCAAAAGCTGCTAATTTTGGTGCCAAGGACTTGCCAAGAACCATGCTCAGTGACCACTTAGAAAAAAGACTTTTTGAGCGTCTTATGGAAGAGAGAGCAAACTGGGAGAAAGTTGAAGGGAACGAGAATCTTGATAAGGTTTCAGCAGCAGAAAGTCTTTCTATTAGAGAAGTGTTATCTGTCGACAAACAATTGAAAGTGAATAAGCTGTTTCTGGACATCATTCCAGAGGAAAATTACCCTGCCGAATTCTCTTATAGATCAAGAGTTATTCTTCTGTTTCAGCAGATTGAAGGAGTAGATATATGCATTTTTGGAATGTACGCCCAGGAGTTCGGCTCCGAATGCGGCAATCCAAATCAGCGTTGTGTACACATTTCATATCTTGATTCTGTCAAGTATTTTAGGCCTGAGAGAAGAACAAAGAGTGGAGAAGCCCTTCGTACCTTTGTTTACCATGAGATATTGATTGGATACCTTGATTTTTGTAAGAAACGGGGTTTCTCAACTTGCTACATATGGGCCTGTGCTCCTTCAAGAAAAGGGGATGATTATATACTATATTGTCATCCTGAAGAGCAAAAGACTCCGAAGAATGATAAGCTACGCCGTTGGTATCTTTCTATGATAAAAAAGGCTACTGAAGAAAATATTATTGTTGGTTTAACCAACGTATATGATCATTTCTTTGTTCCTACTGAAAAAGGGAACTCCAAGGTGACAACTTCTCGTTTGCCATACTTTGATGGAGACTACTGGTGTGGTTATGTTATGGAAGCAGCCAGGACCATTGAAAAAGAGAGCGGAGGAGACTATGAAAAGATGTTGAAGAAACAAGTGCCAAATAGAGCTTTAAAGACCATGGGACATGCCAATCCTTCTAAAGACACTGCCAAAGACATTCTGGTGATGCAAAAAGTTGGCCAAAAGATATTGCCTACCAGGGAAAACTTCATCATAGCTCACTTGCAGTATTCATGCATGCACTGCCATGAAGTGATAGCATCTGGGAAGCGATGGTTTTGCACTGAATGCAAGAAATTTCAGGAGTGTGAAAGATGCCATAGTTCTGATGCACACATTTCAAAGAATGGCGAGGTGCATACACTATGTCAGGCTGTTGTTGATGATATTCCCTCCAACACTAAGCATAATGATATCATCCTTGAGAGTGGATTATTTGAAAATAGGAACAGCCTTTTGAGTTTTTGCCAGAAGTATCAATTTCAGTTTGACATACTCCGCCGTGCCAAGTATTCATCAATGATGATCCTCTACCATTTAAACAACCCTACTCTGGTGACTGTTGGAAAATGTAGCATTTGTTATGCACACAATATATTTCAAAAGTGCTGGAAATGTGAGATTTGTCCAGAATGTACCATTTGCTCTGCTTGCTATAAGGATAGAGGTGCTAACTGCCATGAACACAAGTTGACTCAAAATGAACTCACATTGACTCAAAATTATTCAACACCACTATGTCAATTTGGGAATCGTGAGTCAAATGAGAAAACGATGCTGAAACTGCTGGATGTTTTGAAGCATGCATCTCAATGTTCCGCAACTAATGCTGAACCATGCTCTTATCCAAACTGTTCTCAAATCAAGAAGCTATTCTCTCATGCTCGTAGGTGCAAAATTCGAGTAAATCGGGGATGCCAGCACTGTAAAAAGATATGGTTTATACTAACTGCCCACTCCAGGAATTGCAAAGACTCGGAATGTAGAATACCACGTTGCAGGGATCTGAAGAAGCATATAGAATCGAAAACAACGCATTCCGAATCTTGGCGTGGAGCTGCAGTTATTGAAAGCGACACAGCAGTCGTTGATCAATGA
Protein sequence

>Msa0432840

MLAKGSELGGNIWRELPRNSSSVVSNTPQKRCFDKLSSPHVSNPVGFSTDWRYHPEMTYNRHWIRKRIFEIIQNEQFAPMLELLLLTTAASKEEYMNLETLNQRMQALVGVSKSDAAGYYGVPEGRLSDPFIVHDLPCSPDDGSSTPLLADMCVLPNLPVSYGGSNLDANTRSCSNYFPLKHANNVEVNLSKQRDCLGFIQNNESMSFPTSMGKSIQFEDLHSTFPKLVSADISEQSNLFPSTSSCLELEDTGRNKPQELDFQNSFTHAMLQPTKRRKMTEFAFDVSWVNDASSDQSTYKMAQPCSFETLSEVQQQLETIESGMIPSKGLESGMKYSRNSMEINSKPTLRKELKDIDDDEEDIQGRTGFIQAGVNAKKELIIVHEGEEDIQGRTGFNQDGINDKKEIIESKDDQEKQTKSPNTIIEAVSLIDLFTRDQIEEHISSLRKESVQITSEEEAGIDANTCQLCQRKKLYFAPVPIFCSCCGVRIRRTYFCRKEEEFDAQGCICTVCYKNSKGGKITFNGAFVSKTNLEKKNNDEVFEEPWVECNKCKRWQHQICALYNNKRDLDCSAEYICPVCRLKEIKNGIHVPLPKAANFGAKDLPRTMLSDHLEKRLFERLMEERANWEKVEGNENLDKVSAAESLSIREVLSVDKQLKVNKLFLDIIPEENYPAEFSYRSRVILLFQQIEGVDICIFGMYAQEFGSECGNPNQRCVHISYLDSVKYFRPERRTKSGEALRTFVYHEILIGYLDFCKKRGFSTCYIWACAPSRKGDDYILYCHPEEQKTPKNDKLRRWYLSMIKKATEENIIVGLTNVYDHFFVPTEKGNSKVTTSRLPYFDGDYWCGYVMEAARTIEKESGGDYEKMLKKQVPNRALKTMGHANPSKDTAKDILVMQKVGQKILPTRENFIIAHLQYSCMHCHEVIASGKRWFCTECKKFQECERCHSSDAHISKNGEVHTLCQAVVDDIPSNTKHNDIILESGLFENRNSLLSFCQKYQFQFDILRRAKYSSMMILYHLNNPTLVTVGKCSICYAHNIFQKCWKCEICPECTICSACYKDRGANCHEHKLTQNELTLTQNYSTPLCQFGNRESNEKTMLKLLDVLKHASQCSATNAEPCSYPNCSQIKKLFSHARRCKIRVNRGCQHCKKIWFILTAHSRNCKDSECRIPRCRDLKKHIESKTTHSESWRGAAVIESDTAVVDQ*