AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0433840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433840 MtrunA17_Chr3g0140101 94.952 416 21 0 1 416 1 416 0.0 807
Msa0433840 MtrunA17_Chr3g0140091 89.804 255 16 2 398 643 97 350 6.73e-160 462
Msa0433840 MtrunA17_Chr4g0019621 93.478 230 9 2 414 643 25 248 3.41e-149 431
Msa0433840 MtrunA17_Chr4g0019621 44.860 107 59 0 528 634 8 114 2.69e-22 96.7
Msa0433840 MtrunA17_Chr8g0390251 68.627 255 70 2 398 643 94 347 2.71e-121 364
Msa0433840 MtrunA17_Chr8g0390251 52.419 124 58 1 511 634 86 208 2.63e-32 128
Msa0433840 MtrunA17_Chr6g0486631 70.435 230 67 1 414 643 120 348 1.34e-112 342
Msa0433840 MtrunA17_Chr6g0486631 44.355 124 68 1 511 634 87 209 3.26e-27 113
Msa0433840 MtrunA17_Chr2g0288571 61.868 257 84 3 400 643 32 287 5.44e-102 312
Msa0433840 MtrunA17_Chr2g0288571 52.308 130 60 2 500 628 10 138 5.52e-33 128
Msa0433840 MtrunA17_Chr4g0075021 55.985 259 100 3 398 643 25 282 3.73e-96 296
Msa0433840 MtrunA17_Chr4g0075021 52.846 123 57 1 511 633 17 138 2.52e-31 123
Msa0433840 MtrunA17_Chr4g0075001 58.120 234 93 2 414 643 33 265 2.11e-92 286
Msa0433840 MtrunA17_Chr4g0075001 50.943 106 52 0 528 633 16 121 4.10e-26 108
Msa0433840 MtrunA17_Chr1g0154301 38.918 388 209 11 41 414 63 436 3.49e-80 261
Msa0433840 MtrunA17_Chr4g0034121 37.275 389 204 10 50 405 79 460 2.13e-71 239
Msa0433840 MtrunA17_Chr5g0403011 36.979 384 210 11 34 405 52 415 5.12e-71 237
Msa0433840 MtrunA17_Chr8g0381281 37.209 344 190 12 58 385 64 397 1.26e-51 184
Msa0433840 MtrunA17_Chr2g0331341 45.641 195 101 4 192 384 2 193 1.16e-50 176
Msa0433840 MtrunA17_Chr4g0020751 31.988 347 210 11 70 405 46 377 2.42e-49 177
Msa0433840 MtrunA17_Chr5g0414581 33.842 393 202 12 68 405 50 439 6.44e-48 174
Msa0433840 MtrunA17_Chr3g0118031 32.746 397 217 16 50 405 18 405 6.43e-46 168
Msa0433840 MtrunA17_Chr4g0059501 32.902 386 222 14 50 405 14 392 4.91e-44 162
Msa0433840 MtrunA17_Chr4g0058101 27.900 319 187 9 72 382 21 304 1.28e-25 108
Msa0433840 MtrunA17_Chr4g0019611 81.633 49 9 0 368 416 1 49 3.57e-19 82.8
Msa0433840 MtrunA17_Chr2g0331331 37.113 97 57 3 78 171 74 169 4.82e-14 71.2
Msa0433840 MtrunA17_Chr4g0067151 25.121 207 130 7 193 391 119 308 2.02e-12 68.9
Msa0433840 MtrunA17_Chr6g0474101 27.632 228 138 10 193 418 149 351 5.53e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433840 AT1G67280.2 70.588 255 65 2 398 643 9 262 1.32e-123 367
Msa0433840 AT1G67280.2 53.226 124 57 1 511 634 1 123 2.01e-32 126
Msa0433840 AT1G67280.1 70.588 255 65 2 398 643 97 350 2.86e-123 369
Msa0433840 AT1G67280.1 53.226 124 57 1 511 634 89 211 3.88e-32 128
Msa0433840 AT1G11840.4 62.934 259 82 3 398 643 26 283 5.27e-104 317
Msa0433840 AT1G11840.4 50.833 120 58 1 514 633 21 139 3.24e-30 120
Msa0433840 AT1G11840.1 62.934 259 82 3 398 643 26 283 5.27e-104 317
Msa0433840 AT1G11840.1 50.833 120 58 1 514 633 21 139 3.24e-30 120
Msa0433840 AT1G11840.3 62.934 259 82 3 398 643 26 283 5.27e-104 317
Msa0433840 AT1G11840.3 50.833 120 58 1 514 633 21 139 3.24e-30 120
Msa0433840 AT1G11840.2 62.934 259 82 3 398 643 26 283 5.27e-104 317
Msa0433840 AT1G11840.2 50.833 120 58 1 514 633 21 139 3.24e-30 120
Msa0433840 AT1G11840.6 62.934 259 82 3 398 643 65 322 6.44e-104 318
Msa0433840 AT1G11840.6 50.833 120 58 1 514 633 60 178 3.08e-30 122
Msa0433840 AT2G26490.1 40.945 381 196 11 48 415 60 424 2.78e-83 270
Msa0433840 AT3G50390.1 42.651 347 175 10 73 406 86 421 9.66e-81 263
Msa0433840 AT4G34380.1 41.279 344 176 8 81 406 118 453 1.05e-75 251
Msa0433840 AT1G49450.1 37.346 407 195 13 38 405 77 462 1.53e-71 239
Msa0433840 AT1G11840.5 60.000 195 68 2 398 583 26 219 2.48e-71 231
Msa0433840 AT1G11840.5 50.833 120 58 1 514 633 21 139 4.20e-31 122
Msa0433840 AT3G18950.1 37.084 391 196 13 50 405 85 460 4.74e-69 233
Msa0433840 AT1G47610.1 38.710 341 180 11 81 405 17 344 6.62e-64 215
Msa0433840 AT1G24130.1 35.135 370 198 14 68 406 49 407 1.74e-53 189
Msa0433840 AT3G51930.1 33.952 377 213 16 50 405 29 390 5.14e-53 187
Msa0433840 AT5G50120.1 32.323 396 215 15 48 406 2 381 1.77e-51 183
Msa0433840 AT1G24530.1 32.591 359 220 13 58 405 52 399 4.47e-46 169
Msa0433840 AT3G49660.1 26.126 222 134 8 193 406 112 311 1.00e-13 73.2
Msa0433840 AT5G49200.1 23.826 298 194 13 81 355 124 411 1.92e-12 70.1
Msa0433840 AT4G02730.1 27.979 193 115 6 193 377 127 303 4.27e-11 65.5
Msa0433840 AT2G47410.5 25.764 229 121 6 80 263 270 494 4.86e-11 66.6
Msa0433840 AT2G47410.6 25.764 229 121 6 80 263 88 312 5.15e-11 66.6
Msa0433840 AT2G47410.3 25.764 229 121 6 80 263 88 312 5.15e-11 66.6
Msa0433840 AT5G51980.1 21.333 300 202 9 78 356 141 427 7.28e-11 65.1
Msa0433840 AT5G51980.2 21.333 300 202 9 78 356 141 427 7.28e-11 65.1

Find 207 sgRNAs with CRISPR-Local

Find 467 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCAAGATGTTTGCTTCTT+TGG 0.173797 3_2:+86457389 Msa0433840:three_prime_UTR
TGGTTATAGGTTTGAGCTTT+TGG 0.209102 3_2:+86455568 Msa0433840:CDS
TAGTTTGGACCAAACATTTA+AGG 0.222030 3_2:+86451760 Msa0433840:CDS
TCCAAGGGTTTCATCTTTAC+AGG 0.225575 3_2:+86450855 Msa0433840:CDS
TCATGAGTGTTTGATGGTTT+TGG 0.231266 3_2:+86451655 Msa0433840:CDS
CAGAACCCTCTTCACCTTAA+TGG 0.236727 3_2:+86450599 Msa0433840:CDS
TCTGACATTGGAACTGGTTT+TGG 0.260047 3_2:+86455205 Msa0433840:CDS
CACCAAGATCGTTGTTTGCT+TGG 0.286526 3_2:+86456291 Msa0433840:CDS
CAATATTAATTCAAATTTGC+AGG 0.290334 3_2:-86457148 Msa0433850:intron
TATGGACATTTAAAATAGTA+TGG 0.291129 3_2:+86457203 Msa0433840:three_prime_UTR
AGAAAATCTAATGAACTAAA+TGG 0.295512 3_2:-86457505 Msa0433850:intron
TTAAGATATGGCCTATAAAA+TGG 0.305715 3_2:-86456891 Msa0433850:intron
TCTTCTGCTGCTGCTGCATT+TGG 0.306928 3_2:+86454491 Msa0433840:CDS
CATGTTGTTATAAGCTAAAA+TGG 0.309526 3_2:-86450964 None:intergenic
AGGAAGAGTAGCTACTTTCT+TGG 0.310609 3_2:-86451054 None:intergenic
TTGAAGATCCTAGTGGTTAT+AGG 0.311803 3_2:+86455555 Msa0433840:CDS
CGTAAACTGCTTTACACATT+TGG 0.312441 3_2:+86457242 Msa0433840:three_prime_UTR
TCCTCCAAACCTTAAATGTT+TGG 0.313148 3_2:-86451769 None:intergenic
GGACCCTGATGGTTGGAAAT+TGG 0.313975 3_2:+86456312 Msa0433840:CDS
ATTCTCTGTGAGATTGGATT+TGG 0.319169 3_2:-86450671 None:intergenic
GCCATTGCCATGGATTTCTA+TGG 0.325300 3_2:+86450573 Msa0433840:CDS
AGTAAGTTCAACTGTAAAAC+TGG 0.328366 3_2:-86455037 None:intergenic
CAGCCAGATTGCATGGATAA+AGG 0.329709 3_2:+86450909 Msa0433840:CDS
CTGATGGATCAGTGAAAATA+TGG 0.333879 3_2:+86451333 Msa0433840:CDS
TTTGGTTTACAGTGCTAGTT+TGG 0.334905 3_2:+86451745 Msa0433840:CDS
TAGAAATGAACTCAGATTGT+AGG 0.340268 3_2:+86457563 Msa0433840:three_prime_UTR
TAACAATGGCTTCATTGAAA+TGG 0.351493 3_2:-86457286 Msa0433850:intron
AAGATCACAAAATCAGAATA+TGG 0.352667 3_2:+86451003 Msa0433840:CDS
CATTTGATTCTCTGTGAGAT+TGG 0.375794 3_2:-86450677 None:intergenic
CGAAGCATCACTTTGCATAA+GGG 0.378451 3_2:-86455611 None:intergenic
GTGTTTGAACAGATTGCTAT+AGG 0.380967 3_2:+86456181 Msa0433840:intron
CTTTAAGCAATGTTAAGATA+TGG 0.384502 3_2:-86456903 Msa0433850:intron
CCCTCCAATCACTATATATG+AGG 0.386883 3_2:+86456604 Msa0433840:three_prime_UTR
TCGAAGCATCACTTTGCATA+AGG 0.390181 3_2:-86455612 None:intergenic
CGCCGCAATTTAACATGTAC+TGG 0.399496 3_2:+86456705 Msa0433840:three_prime_UTR
ACTAATTATGACAAAGGAAA+TGG 0.400635 3_2:+86456044 Msa0433840:CDS
TAGAGGACCTGTTAGATGTT+TGG 0.402693 3_2:+86451685 Msa0433840:CDS
TTGTTATCATGAGTGTTTGA+TGG 0.411101 3_2:+86451649 Msa0433840:CDS
ACAGTAGCCGAATTCGTGTT+TGG 0.414612 3_2:+86450883 Msa0433840:CDS
TAGATATTGTAAAGGCAAAA+GGG 0.417731 3_2:+86455474 Msa0433840:CDS
TTCTTAATTTCAAAGGCTGT+TGG 0.417949 3_2:+86455769 Msa0433840:intron
GCTGCTTCCAAACACGAATT+CGG 0.420036 3_2:-86450890 None:intergenic
ATTAAGCATGAGCAACATAA+TGG 0.427319 3_2:-86457606 Msa0433850:intron
TGGACATGAAGATGAATGTT+GGG 0.429002 3_2:-86450651 None:intergenic
GTAAAGAAGACAAACAGTTC+TGG 0.435761 3_2:-86456739 Msa0433850:CDS
GTAGATATTGTAAAGGCAAA+AGG 0.439002 3_2:+86455473 Msa0433840:CDS
AGACAAACAGTTCTGGTTAG+AGG 0.439485 3_2:-86456732 Msa0433850:CDS
ACTGTAAAACTGGAATCTTC+AGG 0.439492 3_2:-86455027 None:intergenic
AGTAATGAAGGGGAAGGAGG+TGG 0.442851 3_2:-86450774 None:intergenic
CATACCAATTTCCAACCATC+AGG 0.443644 3_2:-86456316 None:intergenic
CTTCTCAAACGTACAAGAAA+AGG 0.445894 3_2:-86457336 Msa0433850:intron
CAAGCAGCCAAACATCTAAC+AGG 0.446389 3_2:-86451692 None:intergenic
GCGAGGAGCTGCTACTTTGA+AGG 0.446885 3_2:-86457475 Msa0433850:CDS
AGCCAGATTGCATGGATAAA+GGG 0.448020 3_2:+86450910 Msa0433840:CDS
GAGATGGAGAAAGTTGTTGT+AGG 0.450900 3_2:+86451719 Msa0433840:CDS
TGTTTCCTTCGTGGCGGTGG+AGG 0.451181 3_2:-86450815 None:intergenic
TTTGGCTGCTTGTCTTGAGA+TGG 0.451216 3_2:+86451703 Msa0433840:CDS
GATAGACAACCCTGAGGAAA+AGG 0.451770 3_2:+86455810 Msa0433840:CDS
TGAAAACACAACCATCATCT+TGG 0.452089 3_2:-86451301 None:intergenic
CGCGAACCTGGACCCTTACC+TGG 0.452930 3_2:+86456262 Msa0433840:CDS
CAGTACACAGTAGCCAAGTT+GGG 0.453964 3_2:+86455966 Msa0433840:intron
GATAACTCTGACATTGGAAC+TGG 0.455696 3_2:+86455199 Msa0433840:CDS
TTTCCCTTCCGGGCCAAGCT+GGG 0.455831 3_2:+86456837 Msa0433840:three_prime_UTR
AGGGGAAGGAGGTGGAAGAG+AGG 0.456077 3_2:-86450766 None:intergenic
TTGGACATGAAGATGAATGT+TGG 0.456963 3_2:-86450652 None:intergenic
GCACGTATGGAGAAAGGGCT+TGG 0.457388 3_2:-86457453 Msa0433850:CDS
CTTTACAATATCTACTGTCT+TGG 0.457793 3_2:-86455465 None:intergenic
AGATGTTTCCTTCGTGGCGG+TGG 0.459891 3_2:-86450818 None:intergenic
GGGAAGATTATCCGCGAACC+TGG 0.460673 3_2:+86456250 Msa0433840:CDS
AGAACAGGACCATTAGCTTC+AGG 0.460964 3_2:-86455996 None:intergenic
TACCCTTTATCCATGCAATC+TGG 0.461295 3_2:-86450912 None:intergenic
TACTTCAATGTTTGTAACAA+TGG 0.463397 3_2:-86457300 Msa0433850:intron
GTCCAAGCAAACAACGATCT+TGG 0.465002 3_2:-86456293 None:intergenic
ACAGTAGCCAAGTTGGGATA+TGG 0.468535 3_2:+86455972 Msa0433840:CDS
CGCGGTACTTTGTGTTGAAA+CGG 0.468639 3_2:+86451559 Msa0433840:CDS
GGAGTGGATAACTCTGACAT+TGG 0.471698 3_2:+86455193 Msa0433840:CDS
TGTTCTGCTGAAGTTTAGAA+AGG 0.478796 3_2:-86451093 None:intergenic
CTTGGTGTTGATACCAGGTA+AGG 0.479311 3_2:-86456275 None:intergenic
CTCTACTCAGGAAGTTCAGA+TGG 0.480055 3_2:+86451461 Msa0433840:CDS
AGATGGAGAAAGTTGTTGTA+GGG 0.482630 3_2:+86451720 Msa0433840:CDS
AGCTTGGCCCGGAAGGGAAA+AGG 0.486161 3_2:-86456834 Msa0433850:CDS
GTAGGGAACATGGTGTTTAG+TGG 0.486736 3_2:+86451581 Msa0433840:CDS
CTACTCCATCGCAGTTTCCA+AGG 0.488897 3_2:+86450839 Msa0433840:CDS
CCATAACAGGAGTTCTTCAC+TGG 0.490229 3_2:-86457185 Msa0433850:intron
AGCAAACATCTTGACAGCAC+TGG 0.491176 3_2:-86457382 Msa0433850:CDS
TTGAAGGCACGTATGGAGAA+AGG 0.492486 3_2:-86457459 Msa0433850:CDS
CTCAATGCAAGTGTGTTAAC+TGG 0.493744 3_2:-86451416 None:intergenic
TCAGTACACAGTAGCCAAGT+TGG 0.494157 3_2:+86455965 Msa0433840:intron
TTATACCTCAGTTCTAGAAC+AGG 0.496272 3_2:-86456011 None:intergenic
GAAAGTGTCCACGGTGATTG+TGG 0.497706 3_2:-86450744 None:intergenic
TAGAGTAATGAAGGGGAAGG+AGG 0.500583 3_2:-86450777 None:intergenic
ATGCAATGGTAGAGTAATGA+AGG 0.500684 3_2:-86450786 None:intergenic
GTTTCCTTCGTGGCGGTGGA+GGG 0.501476 3_2:-86450814 None:intergenic
TTCTTCACTAAACTTATAGT+AGG 0.505475 3_2:+86456533 Msa0433840:three_prime_UTR
GGATATGGTCCTGAAGCTAA+TGG 0.505691 3_2:+86455987 Msa0433840:CDS
TCAGAAGGACTCTTATACAC+TGG 0.505995 3_2:+86451179 Msa0433840:CDS
ATATCCCAGCTTGGCCCGGA+AGG 0.509324 3_2:-86456841 Msa0433850:CDS
CCTCAGGGTTGTCTATCTTG+TGG 0.510152 3_2:-86455804 None:intergenic
TGCTACTTTGAAGGCACGTA+TGG 0.510225 3_2:-86457466 Msa0433850:CDS
CTTCTCCATTAAGGTGAAGA+GGG 0.514902 3_2:-86450604 None:intergenic
AACCATTGTTTCCTCTACTC+AGG 0.518039 3_2:+86451449 Msa0433840:CDS
GCCTGTAAAGATGAAACCCT+TGG 0.518995 3_2:-86450856 None:intergenic
GATTGTGGAAATGTGGTAGA+AGG 0.519378 3_2:-86450729 None:intergenic
CATTATGCATGCCATTGCCA+TGG 0.519427 3_2:+86450563 None:intergenic
CCAGTGAAGAACTCCTGTTA+TGG 0.520211 3_2:+86457185 Msa0433840:three_prime_UTR
TTGCATAAGGGTTCGCGAGT+AGG 0.520825 3_2:-86455599 None:intergenic
TGGAGTAGATGTTTCCTTCG+TGG 0.521247 3_2:-86450824 None:intergenic
TTTGCTTGGACCCTGATGGT+TGG 0.526751 3_2:+86456305 Msa0433840:CDS
TCCTTCGTGGCGGTGGAGGG+AGG 0.527041 3_2:-86450811 None:intergenic
CAAGACAGTAGATATTGTAA+AGG 0.527171 3_2:+86455466 Msa0433840:CDS
TGAAGGCACGTATGGAGAAA+GGG 0.527933 3_2:-86457458 Msa0433850:CDS
TTGATACCAGGTAAGGGTCC+AGG 0.528793 3_2:-86456268 None:intergenic
AGCGATATCCCAGCTTGGCC+CGG 0.529305 3_2:-86456845 Msa0433850:CDS
CAACACAAAGTACCGCGAAA+CGG 0.532484 3_2:-86451553 None:intergenic
CAAAGATTTAGTTTCTTGCA+TGG 0.533242 3_2:+86451145 Msa0433840:CDS
GATCAGTGAAAATATGGAGA+AGG 0.535391 3_2:+86451339 Msa0433840:CDS
AACACGAATTCGGCTACTGT+TGG 0.538523 3_2:-86450880 None:intergenic
TACTTTGTGTTGAAACGGTA+GGG 0.539068 3_2:+86451564 Msa0433840:CDS
TTGGAAGCAGCCAGATTGCA+TGG 0.540447 3_2:+86450902 Msa0433840:CDS
CCCTCATATATAGTGATTGG+AGG 0.540771 3_2:-86456605 None:intergenic
ACGACAGAACAGTCAAAGCT+TGG 0.545351 3_2:+86451207 Msa0433840:CDS
GACAAACAGTTCTGGTTAGA+GGG 0.548395 3_2:-86456731 Msa0433850:CDS
CCGCACTTCTCCTCGAGTGT+TGG 0.548746 3_2:+86457417 Msa0433840:three_prime_UTR
CCTTCTCCATTAAGGTGAAG+AGG 0.550176 3_2:-86450605 None:intergenic
ATCTTAGTAAACCAAGATGA+TGG 0.551758 3_2:+86451290 Msa0433840:CDS
GGAAATGTGGTAGAAGGTCT+TGG 0.551850 3_2:-86450723 None:intergenic
CAGGTAAGGGTCCAGGTTCG+CGG 0.554222 3_2:-86456261 None:intergenic
CCTCTTCACCTTAATGGAGA+AGG 0.554288 3_2:+86450605 Msa0433840:CDS
TAAGTTTAGTGAAGAAGTGT+AGG 0.554352 3_2:-86456526 None:intergenic
ACGATCTTGGTGTTGATACC+AGG 0.555602 3_2:-86456280 None:intergenic
GGTGGAGGGAGGCGATGCAA+TGG 0.558132 3_2:-86450800 None:intergenic
TGTATAAGAGTCCTTCTGAA+TGG 0.558255 3_2:-86451175 None:intergenic
TTCAGGACCATATCCCAACT+TGG 0.559056 3_2:-86455979 None:intergenic
TACTCCATCGCAGTTTCCAA+GGG 0.562936 3_2:+86450840 Msa0433840:CDS
CCTCCAATCACTATATATGA+GGG 0.563961 3_2:+86456605 Msa0433840:three_prime_UTR
TGGTAGAGTAATGAAGGGGA+AGG 0.569085 3_2:-86450780 None:intergenic
TAAAATGGTGCGGATTTCAC+CGG 0.569455 3_2:-86450949 None:intergenic
ATGGCTTATTACCATTCAGA+AGG 0.571551 3_2:+86451164 Msa0433840:CDS
GTACTTTGTGTTGAAACGGT+AGG 0.572292 3_2:+86451563 Msa0433840:CDS
GGAAAGGTTACAAGAGAACC+AGG 0.573831 3_2:+86455497 Msa0433840:CDS
TAAACTTATAGTAGGCTACT+AGG 0.574564 3_2:+86456541 Msa0433840:three_prime_UTR
AACTAAATGGCAGCATTGCG+AGG 0.578223 3_2:-86457492 Msa0433850:intron
GCCATAGAAATCCATGGCAA+TGG 0.578353 3_2:-86450574 None:intergenic
AGAAGGCTATGACACGATCA+AGG 0.584516 3_2:-86455646 None:intergenic
GAAACCCTTGGAAACTGCGA+TGG 0.584864 3_2:-86450844 None:intergenic
GTTGTTTGCTTGGACCCTGA+TGG 0.585011 3_2:+86456301 Msa0433840:CDS
CAAAGGAAATGGCTATGCAC+AGG 0.585145 3_2:+86456055 Msa0433840:CDS
TCCAATCACTATATATGAGG+GGG 0.586566 3_2:+86456607 Msa0433840:three_prime_UTR
GCCTCCCTCCACCGCCACGA+AGG 0.586665 3_2:+86450810 Msa0433840:CDS
CATCTGAACTTCCTGAGTAG+AGG 0.588876 3_2:-86451460 None:intergenic
AGAGAACCAGGGTCTGTCAA+AGG 0.592272 3_2:+86455509 Msa0433840:CDS
ATCAGTGAAAATATGGAGAA+GGG 0.593761 3_2:+86451340 Msa0433840:CDS
AGATATTGTAAAGGCAAAAG+GGG 0.595704 3_2:+86455475 Msa0433840:CDS
TGTGCAGCGATATCCCAGCT+TGG 0.596256 3_2:-86456850 Msa0433850:CDS
TATCCCAGCTTGGCCCGGAA+GGG 0.598830 3_2:-86456840 Msa0433850:CDS
GCACTGGACTGTGTCTTCAG+AGG 0.601236 3_2:-86457366 Msa0433850:CDS
GAGCTACCTTTGACAGACCC+TGG 0.602880 3_2:-86455515 None:intergenic
TTTGCAGGGTCACCGTTTCG+CGG 0.604584 3_2:+86451541 Msa0433840:CDS
AAAATGGCAGATATAGTCAC+CGG 0.606175 3_2:-86456875 Msa0433850:intron
GTTATAGATTCAACCATGGA+GGG 0.609074 3_2:+86451516 Msa0433840:CDS
ATGGTCCTGTTCTAGAACTG+AGG 0.609502 3_2:+86456006 Msa0433840:CDS
TGCAATGGTAGAGTAATGAA+GGG 0.611681 3_2:-86450785 None:intergenic
GGGTATCTCAAATCAAACTC+CGG 0.612871 3_2:+86450930 Msa0433840:CDS
AATAAGAGTGTGGAGAAGAG+AGG 0.613199 3_2:+86451619 Msa0433840:CDS
TGTTGAAACGGTAGGGAACA+TGG 0.615209 3_2:+86451571 Msa0433840:CDS
CTGGACTGTGTCTTCAGAGG+AGG 0.616030 3_2:-86457363 Msa0433850:CDS
TGAACAGATTGCTATAGGCA+CGG 0.617304 3_2:+86456186 Msa0433840:intron
TGGGATATCGCTGCACACTC+CGG 0.618172 3_2:+86456856 Msa0433840:three_prime_UTR
TGTTATAGATTCAACCATGG+AGG 0.619591 3_2:+86451515 Msa0433840:CDS
CTCCAGTACATGTTAAATTG+CGG 0.619673 3_2:-86456707 Msa0433850:CDS
CCTCATATATAGTGATTGGA+GGG 0.621721 3_2:-86456604 None:intergenic
GAAGCAATCAAATCATGTGG+AGG 0.622375 3_2:+86456229 Msa0433840:CDS
AAGCAATCAAATCATGTGGA+GGG 0.625960 3_2:+86456230 Msa0433840:CDS
TCTGTTGCCATAGAAATCCA+TGG 0.629612 3_2:-86450580 None:intergenic
GGACATGAAGATGAATGTTG+GGG 0.630585 3_2:-86450650 None:intergenic
GGCGTCACTAATTATGACAA+AGG 0.632082 3_2:+86456038 Msa0433840:CDS
GCAGAAGCAATCAAATCATG+TGG 0.633710 3_2:+86456226 Msa0433840:CDS
AAGATACAACAATAAGAGTG+TGG 0.634177 3_2:+86451609 Msa0433840:CDS
GATATTGTAAAGGCAAAAGG+GGG 0.634435 3_2:+86455476 Msa0433840:CDS
TGTTATAAGCTAAAATGGTG+CGG 0.637309 3_2:-86450959 None:intergenic
TTCCTGAGTAGAGGAAACAA+TGG 0.640056 3_2:-86451451 None:intergenic
TTGGTGTTGATACCAGGTAA+GGG 0.644641 3_2:-86456274 None:intergenic
GGAAGAGAGGAAAGTGTCCA+CGG 0.646859 3_2:-86450753 None:intergenic
AGCTCAAACCTATAACCACT+AGG 0.647923 3_2:-86455563 None:intergenic
CTCCAATCACTATATATGAG+GGG 0.648518 3_2:+86456606 Msa0433840:three_prime_UTR
AATGTGGTAGAAGGTCTTGG+TGG 0.649785 3_2:-86450720 None:intergenic
AAAGTGATGCTTCGAGTAGG+CGG 0.650254 3_2:+86455620 Msa0433840:CDS
GAACTAGAGTGACAATAGCA+TGG 0.651608 3_2:+86456491 Msa0433840:exon
CTAGAACTGAGGTATAACTA+CGG 0.651744 3_2:+86456017 Msa0433840:CDS
CCACGGTGATTGTGGAAATG+TGG 0.657164 3_2:-86450736 None:intergenic
ATACCAATTTCCAACCATCA+GGG 0.661992 3_2:-86456315 None:intergenic
AGATTAATAGAATTTGAATG+CGG 0.671794 3_2:-86456764 Msa0433850:CDS
GGAAGGGAAAAGGAAGACAA+CGG 0.672432 3_2:-86456824 Msa0433850:CDS
TGCAAAGTGATGCTTCGAGT+AGG 0.675317 3_2:+86455617 Msa0433840:CDS
AGTAGATGTTTCCTTCGTGG+CGG 0.676399 3_2:-86450821 None:intergenic
TTGTGTTATAGATTCAACCA+TGG 0.678086 3_2:+86451512 Msa0433840:CDS
ATAACCACTAGGATCTTCAA+CGG 0.678581 3_2:-86455552 None:intergenic
CCAATCACTATATATGAGGG+GGG 0.683789 3_2:+86456608 Msa0433840:three_prime_UTR
GACATGAAGATGAATGTTGG+GGG 0.689189 3_2:-86450649 None:intergenic
TACTACGATTCCAACACTCG+AGG 0.689356 3_2:-86457427 Msa0433850:CDS
GCAATGGTAGAGTAATGAAG+GGG 0.706179 3_2:-86450784 None:intergenic
CCAACACTCGAGGAGAAGTG+CGG 0.708360 3_2:-86457417 Msa0433850:CDS
GCTTCCGTTGAAGATCCTAG+TGG 0.716192 3_2:+86455548 Msa0433840:CDS
GGTGATTGCAGATTATGGAG+TGG 0.722660 3_2:+86455177 Msa0433840:intron
CCACATTTCCACAATCACCG+TGG 0.748751 3_2:+86450736 Msa0433840:CDS
GAAAGGTTACAAGAGAACCA+GGG 0.783522 3_2:+86455498 Msa0433840:CDS
CCACAAGATAGACAACCCTG+AGG 0.800561 3_2:+86455804 Msa0433840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTGAAAATTTTGAT+TGG + chr3_2:86452200-86452219 Msa0433840:intron 10.0%
!!! AAAAATTGAAAATTTTGATT+GGG + chr3_2:86452201-86452220 Msa0433840:intron 10.0%
!!! CAATATATACTTTTAATTTT+AGG - chr3_2:86453847-86453866 None:intergenic 10.0%
!! AAAAAAAAATACTAAAATGA+AGG + chr3_2:86454053-86454072 Msa0433840:intron 10.0%
!! TAACATACTAAAAAATAATA+AGG - chr3_2:86456679-86456698 None:intergenic 10.0%
!! ATACATATATCATAAGATTA+AGG - chr3_2:86452778-86452797 None:intergenic 15.0%
!!! TATTTATTTTTCTTAATCGT+AGG + chr3_2:86453449-86453468 Msa0433840:intron 15.0%
!!! ATTTATTTTTCTTAATCGTA+GGG + chr3_2:86453450-86453469 Msa0433840:intron 15.0%
!! AATTCATTAATCATTTAACT+TGG + chr3_2:86453918-86453937 Msa0433840:intron 15.0%
!! ATAAATAAATACATGAATGA+AGG - chr3_2:86454447-86454466 None:intergenic 15.0%
!!! ATCTTAATACTACTTTTTTT+TGG + chr3_2:86455074-86455093 Msa0433840:intron 15.0%
!! AGTTAATGTAATTATTATGA+TGG + chr3_2:86455689-86455708 Msa0433840:intron 15.0%
!!! GATTTTTATGAAAAAATTGT+TGG - chr3_2:86456567-86456586 None:intergenic 15.0%
!!! TTATTTTTTAGTATGTTACT+TGG + chr3_2:86456681-86456700 Msa0433840:three_prime_UTR 15.0%
!!! TATTTTTTAGTATGTTACTT+GGG + chr3_2:86456682-86456701 Msa0433840:three_prime_UTR 15.0%
!!! AGATGGAATGATAAATTTTT+GGG + chr3_2:86451478-86451497 Msa0433840:CDS 20.0%
!! ATAATAATAGGAGAAATTCT+TGG + chr3_2:86451834-86451853 Msa0433840:intron 20.0%
!! AATAATATCCTTTACTGAAA+GGG - chr3_2:86452718-86452737 None:intergenic 20.0%
!! TAATAATATCCTTTACTGAA+AGG - chr3_2:86452719-86452738 None:intergenic 20.0%
!!! TTCATTGATTCATTACTAAT+AGG - chr3_2:86453081-86453100 None:intergenic 20.0%
!!! AAAAACAAGCATAATTTGTT+AGG - chr3_2:86453305-86453324 None:intergenic 20.0%
!! TTAATGAATTTCAGTTAAGA+AGG - chr3_2:86453908-86453927 None:intergenic 20.0%
!!! AAATATTCAAATGCTTTTCT+TGG + chr3_2:86454997-86455016 Msa0433840:CDS 20.0%
!! TTCAATGTTCATCATAATAA+GGG - chr3_2:86455354-86455373 None:intergenic 20.0%
!! ATTCAATGTTCATCATAATA+AGG - chr3_2:86455355-86455374 None:intergenic 20.0%
!! ATTACAAACATCAATCAAAA+AGG - chr3_2:86455892-86455911 None:intergenic 20.0%
!!! GGTTTTTTATGATTATTACA+TGG + chr3_2:86456110-86456129 Msa0433840:intron 20.0%
!! AACATATTACATCAAATACA+AGG - chr3_2:86456358-86456377 None:intergenic 20.0%
!! AGATTAATAGAATTTGAATG+CGG - chr3_2:86456767-86456786 Msa0433850:CDS 20.0%
!!! TATGATTTGTTAATGAATGT+AGG + chr3_2:86457107-86457126 Msa0433840:intron 20.0%
!! CAATATTAATTCAAATTTGC+AGG - chr3_2:86457151-86457170 Msa0433850:CDS 20.0%
!!! TATGGACATTTAAAATAGTA+TGG + chr3_2:86457203-86457222 Msa0433840:three_prime_UTR 20.0%
!! AGAAAATCTAATGAACTAAA+TGG - chr3_2:86457508-86457527 Msa0433850:intron 20.0%
!!! TTAGATTTTCTCTTATTTTG+TGG + chr3_2:86457517-86457536 Msa0433840:three_prime_UTR 20.0%
! CATGTTGTTATAAGCTAAAA+TGG - chr3_2:86450967-86450986 None:intergenic 25.0%
!!! CATTTTAGCTTATAACAACA+TGG + chr3_2:86450965-86450984 Msa0433840:CDS 25.0%
! AAGATCACAAAATCAGAATA+TGG + chr3_2:86451003-86451022 Msa0433840:CDS 25.0%
!! CAGATGGAATGATAAATTTT+TGG + chr3_2:86451477-86451496 Msa0433840:CDS 25.0%
!!! AATGATAAATTTTTGGGAGA+AGG + chr3_2:86451484-86451503 Msa0433840:CDS 25.0%
! AAAAATAACAGAAAAGAGAG+AGG + chr3_2:86451953-86451972 Msa0433840:intron 25.0%
!! GTGAAATTTGTTTGAATCTT+TGG - chr3_2:86452169-86452188 None:intergenic 25.0%
!!! AATTGAAAATTTTGATTGGG+TGG + chr3_2:86452204-86452223 Msa0433840:intron 25.0%
! AATTGATCAATGGTTGTAAA+AGG + chr3_2:86452233-86452252 Msa0433840:intron 25.0%
! AAAAAATAGAGAGAGAAACT+GGG - chr3_2:86452475-86452494 None:intergenic 25.0%
! AAAAAAATAGAGAGAGAAAC+TGG - chr3_2:86452476-86452495 None:intergenic 25.0%
!!! TGTGATCAAATTTCACTTTT+TGG + chr3_2:86452567-86452586 Msa0433840:intron 25.0%
! TTATTAGAGCAATTCTTAGA+TGG - chr3_2:86452601-86452620 None:intergenic 25.0%
! CTAAGAATTGCTCTAATAAT+AGG + chr3_2:86452602-86452621 Msa0433840:intron 25.0%
! ATGATATATGTATGCTAACT+AGG + chr3_2:86452785-86452804 Msa0433840:intron 25.0%
! TGTGGGACTAATTATATAAA+TGG + chr3_2:86452932-86452951 Msa0433840:intron 25.0%
!! AAGTATTGTTCAAACTTCAA+AGG + chr3_2:86452984-86453003 Msa0433840:intron 25.0%
!! TTTGTTAGGAAATTCACTTT+TGG - chr3_2:86453291-86453310 None:intergenic 25.0%
!! TTCTTTAGATGATTTTTGTG+TGG + chr3_2:86453682-86453701 Msa0433840:intron 25.0%
! TCTTTAGCTATATATTGTTG+TGG - chr3_2:86453961-86453980 None:intergenic 25.0%
!! GAAATCGTCTATTATCATTT+TGG - chr3_2:86454636-86454655 None:intergenic 25.0%
! ATTTCTACATGTTGTATACA+AGG + chr3_2:86454651-86454670 Msa0433840:intron 25.0%
!! CTAGACAATTAAGACTATTT+TGG + chr3_2:86455417-86455436 Msa0433840:intron 25.0%
! TAGATATTGTAAAGGCAAAA+GGG + chr3_2:86455474-86455493 Msa0433840:CDS 25.0%
! CTTGTCTTTCTTAATTTCAA+AGG + chr3_2:86455762-86455781 Msa0433840:intron 25.0%
! ACTAATTATGACAAAGGAAA+TGG + chr3_2:86456044-86456063 Msa0433840:CDS 25.0%
!! TCTTTTTCTATTTTCAGAAG+AGG + chr3_2:86456088-86456107 Msa0433840:intron 25.0%
!! CTTTTTCTATTTTCAGAAGA+GGG + chr3_2:86456089-86456108 Msa0433840:intron 25.0%
! ACTTATTTATTACTTCTTGC+AGG + chr3_2:86456439-86456458 Msa0433840:intron 25.0%
!!! TGATAATGTTGATTTTCTGA+AGG + chr3_2:86456469-86456488 Msa0433840:CDS 25.0%
! TTCTTCACTAAACTTATAGT+AGG + chr3_2:86456533-86456552 Msa0433840:three_prime_UTR 25.0%
! TTAAGATATGGCCTATAAAA+TGG - chr3_2:86456894-86456913 Msa0433850:intron 25.0%
! CTTTAAGCAATGTTAAGATA+TGG - chr3_2:86456906-86456925 Msa0433850:intron 25.0%
!!! AATATGCTTGCTTTTCATTT+TGG + chr3_2:86457002-86457021 Msa0433840:intron 25.0%
! AAATCATACACATGAGTTAT+TGG - chr3_2:86457095-86457114 Msa0433850:intron 25.0%
!!! CTATTTTAAATGTCCATAAC+AGG - chr3_2:86457201-86457220 Msa0433850:intron 25.0%
! TACTTCAATGTTTGTAACAA+TGG - chr3_2:86457303-86457322 Msa0433850:intron 25.0%
!!! TGTTTTTTCCTTCTCCATTA+AGG - chr3_2:86450616-86450635 None:intergenic 30.0%
TGTTATAAGCTAAAATGGTG+CGG - chr3_2:86450962-86450981 None:intergenic 30.0%
! CAAAGATTTAGTTTCTTGCA+TGG + chr3_2:86451145-86451164 Msa0433840:CDS 30.0%
ATCTTAGTAAACCAAGATGA+TGG + chr3_2:86451290-86451309 Msa0433840:CDS 30.0%
ATCAGTGAAAATATGGAGAA+GGG + chr3_2:86451340-86451359 Msa0433840:CDS 30.0%
!! TAAATTTTTGGGAGAAGGAA+AGG + chr3_2:86451489-86451508 Msa0433840:CDS 30.0%
TTGTGTTATAGATTCAACCA+TGG + chr3_2:86451512-86451531 Msa0433840:CDS 30.0%
AAGATACAACAATAAGAGTG+TGG + chr3_2:86451609-86451628 Msa0433840:CDS 30.0%
TTGTTATCATGAGTGTTTGA+TGG + chr3_2:86451649-86451668 Msa0433840:CDS 30.0%
TAGTTTGGACCAAACATTTA+AGG + chr3_2:86451760-86451779 Msa0433840:CDS 30.0%
! ATTTAAGGTTTGGAGGATTA+AGG + chr3_2:86451775-86451794 Msa0433840:intron 30.0%
GTTTGGATGGTGATAATAAT+AGG + chr3_2:86451822-86451841 Msa0433840:intron 30.0%
TAATAGGAGAAATTCTTGGT+TGG + chr3_2:86451838-86451857 Msa0433840:intron 30.0%
!!! CTGTTATTTTTTCCCTTTCA+CGG - chr3_2:86451944-86451963 None:intergenic 30.0%
! TGTTTGAATCTTTGGAGAAT+TGG - chr3_2:86452161-86452180 None:intergenic 30.0%
TCAATGGTTGTAAAAGGATA+TGG + chr3_2:86452239-86452258 Msa0433840:intron 30.0%
ACAAATTCTCTTTCTCTCTT+AGG + chr3_2:86452526-86452545 Msa0433840:intron 30.0%
!!! ATTTTGATTGATGGGATTCA+TGG - chr3_2:86452824-86452843 None:intergenic 30.0%
!!! TGTGCTTCATTTTGATTGAT+GGG - chr3_2:86452832-86452851 None:intergenic 30.0%
!!! ATGTGCTTCATTTTGATTGA+TGG - chr3_2:86452833-86452852 None:intergenic 30.0%
TAATTAGTCCCACAAAATTG+TGG - chr3_2:86452926-86452945 None:intergenic 30.0%
! AGTGTGTTTCTAATACTCTT+TGG + chr3_2:86453009-86453028 Msa0433840:intron 30.0%
! TAGAATGTTTCTCTCTTTTG+GGG - chr3_2:86453203-86453222 None:intergenic 30.0%
! GTAGAATGTTTCTCTCTTTT+GGG - chr3_2:86453204-86453223 None:intergenic 30.0%
! TGTAGAATGTTTCTCTCTTT+TGG - chr3_2:86453205-86453224 None:intergenic 30.0%
AAAGGCTTGTAGAAACATAA+AGG + chr3_2:86453341-86453360 Msa0433840:intron 30.0%
CCGCAAAGAAATTTCAAATT+GGG - chr3_2:86453379-86453398 None:intergenic 30.0%
! CCCAATTTGAAATTTCTTTG+CGG + chr3_2:86453376-86453395 Msa0433840:intron 30.0%
ACCGCAAAGAAATTTCAAAT+TGG - chr3_2:86453380-86453399 None:intergenic 30.0%
! ATATTTTTCTTAGGAGGCTA+AGG - chr3_2:86453415-86453434 None:intergenic 30.0%
TAGCCTCCTAAGAAAAATAT+AGG + chr3_2:86453415-86453434 Msa0433840:intron 30.0%
! TGTCCTATATTTTTCTTAGG+AGG - chr3_2:86453421-86453440 None:intergenic 30.0%
! CACTGTCCTATATTTTTCTT+AGG - chr3_2:86453424-86453443 None:intergenic 30.0%
TAGATTTGAGAAATCATCGT+TGG + chr3_2:86453757-86453776 Msa0433840:intron 30.0%
! AACTTAGACATTTTCTCAAG+AGG - chr3_2:86453820-86453839 None:intergenic 30.0%
GTATGTCATCTGTGATTTAT+TGG - chr3_2:86454079-86454098 None:intergenic 30.0%
! AGACCAAAACTTGTTTAACT+GGG + chr3_2:86454609-86454628 Msa0433840:intron 30.0%
! AGTTTGTTTGAAAGAGCTTA+TGG - chr3_2:86454854-86454873 None:intergenic 30.0%
GCATTTGAATATTTGTCTTC+TGG - chr3_2:86454991-86455010 None:intergenic 30.0%
! TCAAATGCTTTTCTTGGATA+CGG + chr3_2:86455003-86455022 Msa0433840:CDS 30.0%
AGTAAGTTCAACTGTAAAAC+TGG - chr3_2:86455040-86455059 None:intergenic 30.0%
CTTTACAATATCTACTGTCT+TGG - chr3_2:86455468-86455487 None:intergenic 30.0%
CAAGACAGTAGATATTGTAA+AGG + chr3_2:86455466-86455485 Msa0433840:CDS 30.0%
GTAGATATTGTAAAGGCAAA+AGG + chr3_2:86455473-86455492 Msa0433840:CDS 30.0%
AGATATTGTAAAGGCAAAAG+GGG + chr3_2:86455475-86455494 Msa0433840:CDS 30.0%
!!! TACACTCACTTTTTCATAGA+AGG - chr3_2:86455666-86455685 None:intergenic 30.0%
TTCTTAATTTCAAAGGCTGT+TGG + chr3_2:86455769-86455788 Msa0433840:intron 30.0%
TGCATGTCGTTATAAGAATT+TGG + chr3_2:86456151-86456170 Msa0433840:intron 30.0%
! TAAGTTTAGTGAAGAAGTGT+AGG - chr3_2:86456529-86456548 None:intergenic 30.0%
TAAACTTATAGTAGGCTACT+AGG + chr3_2:86456541-86456560 Msa0433840:three_prime_UTR 30.0%
!!! GACTATATCTGCCATTTTAT+AGG + chr3_2:86456880-86456899 Msa0433840:three_prime_UTR 30.0%
! AAGTTTTGCATACTGAAACT+TGG + chr3_2:86456946-86456965 Msa0433840:intron 30.0%
CTATTCAACATAATGACTAC+AGG - chr3_2:86457034-86457053 Msa0433850:intron 30.0%
TAACAATGGCTTCATTGAAA+TGG - chr3_2:86457289-86457308 Msa0433850:intron 30.0%
TAGAAATGAACTCAGATTGT+AGG + chr3_2:86457563-86457582 Msa0433840:three_prime_UTR 30.0%
TGGACATGAAGATGAATGTT+GGG - chr3_2:86450654-86450673 None:intergenic 35.0%
TTGGACATGAAGATGAATGT+TGG - chr3_2:86450655-86450674 None:intergenic 35.0%
ATTCTCTGTGAGATTGGATT+TGG - chr3_2:86450674-86450693 None:intergenic 35.0%
CATTTGATTCTCTGTGAGAT+TGG - chr3_2:86450680-86450699 None:intergenic 35.0%
TGCAATGGTAGAGTAATGAA+GGG - chr3_2:86450788-86450807 None:intergenic 35.0%
ATGCAATGGTAGAGTAATGA+AGG - chr3_2:86450789-86450808 None:intergenic 35.0%
! GATTTTGTGATCTTTGTGTG+AGG - chr3_2:86450997-86451016 None:intergenic 35.0%
! AAGGAGTTTTTGCTTCTTCT+AGG - chr3_2:86451077-86451096 None:intergenic 35.0%
TGTTCTGCTGAAGTTTAGAA+AGG - chr3_2:86451096-86451115 None:intergenic 35.0%
ATGGCTTATTACCATTCAGA+AGG + chr3_2:86451164-86451183 Msa0433840:CDS 35.0%
TGTATAAGAGTCCTTCTGAA+TGG - chr3_2:86451178-86451197 None:intergenic 35.0%
TGAAAACACAACCATCATCT+TGG - chr3_2:86451304-86451323 None:intergenic 35.0%
! GTTTTCACATGTTCTTCTGA+TGG + chr3_2:86451317-86451336 Msa0433840:CDS 35.0%
! CTGATGGATCAGTGAAAATA+TGG + chr3_2:86451333-86451352 Msa0433840:CDS 35.0%
GATCAGTGAAAATATGGAGA+AGG + chr3_2:86451339-86451358 Msa0433840:CDS 35.0%
TGTTATAGATTCAACCATGG+AGG + chr3_2:86451515-86451534 Msa0433840:CDS 35.0%
GTTATAGATTCAACCATGGA+GGG + chr3_2:86451516-86451535 Msa0433840:CDS 35.0%
TACTTTGTGTTGAAACGGTA+GGG + chr3_2:86451564-86451583 Msa0433840:CDS 35.0%
!! TCATGAGTGTTTGATGGTTT+TGG + chr3_2:86451655-86451674 Msa0433840:CDS 35.0%
AGATGGAGAAAGTTGTTGTA+GGG + chr3_2:86451720-86451739 Msa0433840:CDS 35.0%
! GAAAGTTGTTGTAGGGTTTT+TGG + chr3_2:86451727-86451746 Msa0433840:CDS 35.0%
! TTTGGTTTACAGTGCTAGTT+TGG + chr3_2:86451745-86451764 Msa0433840:CDS 35.0%
! TGGACCAAACATTTAAGGTT+TGG + chr3_2:86451765-86451784 Msa0433840:intron 35.0%
! ACCAAACATTTAAGGTTTGG+AGG + chr3_2:86451768-86451787 Msa0433840:intron 35.0%
TCCTCCAAACCTTAAATGTT+TGG - chr3_2:86451772-86451791 None:intergenic 35.0%
!!! GAGGATTAAGGTTTTTTCTG+AGG + chr3_2:86451787-86451806 Msa0433840:intron 35.0%
TTCTCTCTCTATGTCTTATG+AGG - chr3_2:86451913-86451932 None:intergenic 35.0%
AGAATATGTGATCCGTGAAA+GGG + chr3_2:86451929-86451948 Msa0433840:intron 35.0%
ATAACAGAAAAGAGAGAGGA+TGG + chr3_2:86451957-86451976 Msa0433840:intron 35.0%
TAACAGAAAAGAGAGAGGAT+GGG + chr3_2:86451958-86451977 Msa0433840:intron 35.0%
GACACCTTTATCATTGTTTC+CGG - chr3_2:86452091-86452110 None:intergenic 35.0%
GTGGAAGAACAATTGATCAA+TGG + chr3_2:86452223-86452242 Msa0433840:intron 35.0%
TGGTTGTAAAAGGATATGGA+TGG + chr3_2:86452243-86452262 Msa0433840:intron 35.0%
AGGATATGGATGGTTGTAAA+AGG + chr3_2:86452253-86452272 Msa0433840:intron 35.0%
TGGATGGTTGTAAAAGGATA+TGG + chr3_2:86452259-86452278 Msa0433840:intron 35.0%
TGAGAAGATGTAGAGGTTAA+TGG + chr3_2:86452294-86452313 Msa0433840:intron 35.0%
GAGAAGATGTAGAGGTTAAT+GGG + chr3_2:86452295-86452314 Msa0433840:intron 35.0%
! AGGTTAATGGGTGTAAGAAA+AGG + chr3_2:86452307-86452326 Msa0433840:intron 35.0%
GAAAAGGATACTGAGAAACA+AGG + chr3_2:86452323-86452342 Msa0433840:intron 35.0%
GATACTGAGAAACAAGGTTA+TGG + chr3_2:86452329-86452348 Msa0433840:intron 35.0%
AGTGAGATTGAATGGTTGAT+GGG - chr3_2:86452355-86452374 None:intergenic 35.0%
TGCTCTAATAATAGGTGTGA+TGG + chr3_2:86452610-86452629 Msa0433840:intron 35.0%
GCTCTAATAATAGGTGTGAT+GGG + chr3_2:86452611-86452630 Msa0433840:intron 35.0%
! AAGTTCCATCCACAATTTTG+TGG + chr3_2:86452914-86452933 Msa0433840:intron 35.0%
! AGTTCCATCCACAATTTTGT+GGG + chr3_2:86452915-86452934 Msa0433840:intron 35.0%
TAAATCACAGATGACATACC+TGG + chr3_2:86454080-86454099 Msa0433840:intron 35.0%
CTATGACTATATCCAAATCC+AGG - chr3_2:86454101-86454120 None:intergenic 35.0%
CCACGTTACTAAGTAACTAT+TGG - chr3_2:86454124-86454143 None:intergenic 35.0%
CCAATAGTTACTTAGTAACG+TGG + chr3_2:86454121-86454140 Msa0433840:intron 35.0%
GTAAACAAAGACACAGACAA+AGG + chr3_2:86454223-86454242 Msa0433840:intron 35.0%
TGTAGCAGATGGTAACATTA+AGG - chr3_2:86454291-86454310 None:intergenic 35.0%
ATACATGAATGAAGGCTTTG+AGG - chr3_2:86454439-86454458 None:intergenic 35.0%
CTACCACAATCTCAATTACT+TGG + chr3_2:86454523-86454542 Msa0433840:intron 35.0%
!! TCTCAATTACTTGGTGCAAA+AGG + chr3_2:86454532-86454551 Msa0433840:intron 35.0%
!! AAACAAGTTTTGGTCTGGTT+GGG - chr3_2:86454605-86454624 None:intergenic 35.0%
!! TAAACAAGTTTTGGTCTGGT+TGG - chr3_2:86454606-86454625 None:intergenic 35.0%
!! CAGTTAAACAAGTTTTGGTC+TGG - chr3_2:86454610-86454629 None:intergenic 35.0%
! CAGACCAAAACTTGTTTAAC+TGG + chr3_2:86454608-86454627 Msa0433840:intron 35.0%
CTACATGTTGTATACAAGGT+TGG + chr3_2:86454655-86454674 Msa0433840:intron 35.0%
TGTATACAAGGTTGGAGATT+TGG + chr3_2:86454663-86454682 Msa0433840:intron 35.0%
TTGAAAGAGCTTATGGAAAC+AGG - chr3_2:86454847-86454866 None:intergenic 35.0%
! CAAATGCTTTTCTTGGATAC+GGG + chr3_2:86455004-86455023 Msa0433840:CDS 35.0%
ACTGTAAAACTGGAATCTTC+AGG - chr3_2:86455030-86455049 None:intergenic 35.0%
CGAAATAGCAACTATGATGA+GGG - chr3_2:86455156-86455175 None:intergenic 35.0%
!! TCATCATAGTTGCTATTTCG+CGG + chr3_2:86455156-86455175 Msa0433840:intron 35.0%
GATATTGTAAAGGCAAAAGG+GGG + chr3_2:86455476-86455495 Msa0433840:CDS 35.0%
ATAACCACTAGGATCTTCAA+CGG - chr3_2:86455555-86455574 None:intergenic 35.0%
TTGAAGATCCTAGTGGTTAT+AGG + chr3_2:86455555-86455574 Msa0433840:CDS 35.0%
! TGGTTATAGGTTTGAGCTTT+TGG + chr3_2:86455568-86455587 Msa0433840:CDS 35.0%
! TAGTTGTTACCTTTTCCTCA+GGG - chr3_2:86455822-86455841 None:intergenic 35.0%
GAAAAGGTAACAACTACTTG+TGG + chr3_2:86455826-86455845 Msa0433840:intron 35.0%
GTGGTTATTAATCAGATGCA+TGG + chr3_2:86455845-86455864 Msa0433840:intron 35.0%
TCAATCAAAAAGGTAATGCC+AGG - chr3_2:86455882-86455901 None:intergenic 35.0%
!! TTATACCTCAGTTCTAGAAC+AGG - chr3_2:86456014-86456033 None:intergenic 35.0%
CTAGAACTGAGGTATAACTA+CGG + chr3_2:86456017-86456036 Msa0433840:CDS 35.0%
GTGTTTGAACAGATTGCTAT+AGG + chr3_2:86456181-86456200 Msa0433840:intron 35.0%
AAGCAATCAAATCATGTGGA+GGG + chr3_2:86456230-86456249 Msa0433840:CDS 35.0%
ATACCAATTTCCAACCATCA+GGG - chr3_2:86456318-86456337 None:intergenic 35.0%
CATACAGAGGTTAACATAGT+AGG - chr3_2:86456393-86456412 None:intergenic 35.0%
CCTCATATATAGTGATTGGA+GGG - chr3_2:86456607-86456626 None:intergenic 35.0%
CCTCCAATCACTATATATGA+GGG + chr3_2:86456605-86456624 Msa0433840:three_prime_UTR 35.0%
CTCCAATCACTATATATGAG+GGG + chr3_2:86456606-86456625 Msa0433840:three_prime_UTR 35.0%
TCCAATCACTATATATGAGG+GGG + chr3_2:86456607-86456626 Msa0433840:three_prime_UTR 35.0%
CTCCAGTACATGTTAAATTG+CGG - chr3_2:86456710-86456729 Msa0433850:CDS 35.0%
GTAAAGAAGACAAACAGTTC+TGG - chr3_2:86456742-86456761 Msa0433850:CDS 35.0%
!! GGCAAAAAGAGAGCATATTT+TGG - chr3_2:86456806-86456825 Msa0433850:CDS 35.0%
AAAATGGCAGATATAGTCAC+CGG - chr3_2:86456878-86456897 Msa0433850:intron 35.0%
ATGAAAAGCAAGCATATTGC+AGG - chr3_2:86457000-86457019 Msa0433850:CDS 35.0%
CGTAAACTGCTTTACACATT+TGG + chr3_2:86457242-86457261 Msa0433840:three_prime_UTR 35.0%
CTTCTCAAACGTACAAGAAA+AGG - chr3_2:86457339-86457358 Msa0433850:CDS 35.0%
TGTCAAGATGTTTGCTTCTT+TGG + chr3_2:86457389-86457408 Msa0433840:three_prime_UTR 35.0%
TCTGTTGCCATAGAAATCCA+TGG - chr3_2:86450583-86450602 None:intergenic 40.0%
CTTCTCCATTAAGGTGAAGA+GGG - chr3_2:86450607-86450626 None:intergenic 40.0%
GACATGAAGATGAATGTTGG+GGG - chr3_2:86450652-86450671 None:intergenic 40.0%
GGACATGAAGATGAATGTTG+GGG - chr3_2:86450653-86450672 None:intergenic 40.0%
GATTGTGGAAATGTGGTAGA+AGG - chr3_2:86450732-86450751 None:intergenic 40.0%
GCAATGGTAGAGTAATGAAG+GGG - chr3_2:86450787-86450806 None:intergenic 40.0%
TCCAAGGGTTTCATCTTTAC+AGG + chr3_2:86450855-86450874 Msa0433840:CDS 40.0%
AGCCAGATTGCATGGATAAA+GGG + chr3_2:86450910-86450929 Msa0433840:CDS 40.0%
TACCCTTTATCCATGCAATC+TGG - chr3_2:86450915-86450934 None:intergenic 40.0%
GGGTATCTCAAATCAAACTC+CGG + chr3_2:86450930-86450949 Msa0433840:CDS 40.0%
TAAAATGGTGCGGATTTCAC+CGG - chr3_2:86450952-86450971 None:intergenic 40.0%
! AGGAAGAGTAGCTACTTTCT+TGG - chr3_2:86451057-86451076 None:intergenic 40.0%
TCAGAAGGACTCTTATACAC+TGG + chr3_2:86451179-86451198 Msa0433840:CDS 40.0%
CTCAATGCAAGTGTGTTAAC+TGG - chr3_2:86451419-86451438 None:intergenic 40.0%
AACCATTGTTTCCTCTACTC+AGG + chr3_2:86451449-86451468 Msa0433840:CDS 40.0%
TTCCTGAGTAGAGGAAACAA+TGG - chr3_2:86451454-86451473 None:intergenic 40.0%
GTACTTTGTGTTGAAACGGT+AGG + chr3_2:86451563-86451582 Msa0433840:CDS 40.0%
! AATAAGAGTGTGGAGAAGAG+AGG + chr3_2:86451619-86451638 Msa0433840:CDS 40.0%
!!! GAGTGTTTGATGGTTTTGGA+TGG + chr3_2:86451659-86451678 Msa0433840:CDS 40.0%
!!! ATGGTTTTGGATGGACATAG+AGG + chr3_2:86451668-86451687 Msa0433840:CDS 40.0%
TAGAGGACCTGTTAGATGTT+TGG + chr3_2:86451685-86451704 Msa0433840:CDS 40.0%
GAGATGGAGAAAGTTGTTGT+AGG + chr3_2:86451719-86451738 Msa0433840:CDS 40.0%
TGAGGATGAGAATGTGTGTT+TGG + chr3_2:86451805-86451824 Msa0433840:intron 40.0%
GATGAGAATGTGTGTTTGGA+TGG + chr3_2:86451809-86451828 Msa0433840:intron 40.0%
! GAGAAATTCTTGGTTGGTCA+CGG + chr3_2:86451844-86451863 Msa0433840:intron 40.0%
! AGAAATTCTTGGTTGGTCAC+GGG + chr3_2:86451845-86451864 Msa0433840:intron 40.0%
TGTGACCAAATGCATTGTCT+TGG - chr3_2:86451872-86451891 None:intergenic 40.0%
!! ATGAGGTGTCAAGTGTTGAT+TGG - chr3_2:86451896-86451915 None:intergenic 40.0%
GAGAATATGTGATCCGTGAA+AGG + chr3_2:86451928-86451947 Msa0433840:intron 40.0%
CTTTATCATTGTTTCCGGCA+TGG - chr3_2:86452086-86452105 None:intergenic 40.0%
CATGCCGGAAACAATGATAA+AGG + chr3_2:86452084-86452103 Msa0433840:intron 40.0%
GTTTCATGAGACAAAGACAG+CGG - chr3_2:86452128-86452147 None:intergenic 40.0%
GATGAGATGAGAAGATGTAG+AGG + chr3_2:86452287-86452306 Msa0433840:intron 40.0%
CAGTGAGATTGAATGGTTGA+TGG - chr3_2:86452356-86452375 None:intergenic 40.0%
!!! CTTAGGTGTCGTGTTTTGAT+TGG + chr3_2:86452543-86452562 Msa0433840:intron 40.0%
!! TCCAGTTTTGTCACCTTCTT+GGG + chr3_2:86452666-86452685 Msa0433840:intron 40.0%
AGTTTCTTCTCAACCCAAGA+AGG - chr3_2:86452682-86452701 None:intergenic 40.0%
!! TTGGGTTGAGAAGAAACTTC+AGG + chr3_2:86452684-86452703 Msa0433840:intron 40.0%
! TGGGTTGAGAAGAAACTTCA+GGG + chr3_2:86452685-86452704 Msa0433840:intron 40.0%
GTAGTAGTCCCTTTCAGTAA+AGG + chr3_2:86452707-86452726 Msa0433840:intron 40.0%
GGGATTCATGGAAGAAAAAG+TGG - chr3_2:86452812-86452831 None:intergenic 40.0%
TAGTCCCACAAAATTGTGGA+TGG - chr3_2:86452922-86452941 None:intergenic 40.0%
!! TCATTTAACTTGGACCCCTT+TGG + chr3_2:86453928-86453947 Msa0433840:intron 40.0%
TGTTGTGGTCCTAAACCAAA+GGG - chr3_2:86453946-86453965 None:intergenic 40.0%
TTGTTGTGGTCCTAAACCAA+AGG - chr3_2:86453947-86453966 None:intergenic 40.0%
ACAGATGACATACCTGGATT+TGG + chr3_2:86454086-86454105 Msa0433840:intron 40.0%
ACGTGGCAGTATAATAACGT+AGG + chr3_2:86454138-86454157 Msa0433840:intron 40.0%
TAGGAGATCCAAGACATGTT+TGG + chr3_2:86454157-86454176 Msa0433840:intron 40.0%
AGATCCAAGACATGTTTGGT+CGG + chr3_2:86454161-86454180 Msa0433840:intron 40.0%
ACTAACTGCAGCATTAACGT+AGG + chr3_2:86454196-86454215 Msa0433840:intron 40.0%
GGTCTTAATGTTGTAGCAGA+TGG - chr3_2:86454302-86454321 None:intergenic 40.0%
GTGATGCTACAACTACAACA+AGG - chr3_2:86454323-86454342 None:intergenic 40.0%
CGAGAAGATGAAGATGATGA+TGG - chr3_2:86454347-86454366 None:intergenic 40.0%
AGAGAGATTACCAATACCAC+CGG - chr3_2:86454399-86454418 None:intergenic 40.0%
GCACCAAGTAATTGAGATTG+TGG - chr3_2:86454529-86454548 None:intergenic 40.0%
! GGACCCAGTTAAACAAGTTT+TGG - chr3_2:86454615-86454634 None:intergenic 40.0%
AGATTCTACACTGAATGCCT+TGG + chr3_2:86454937-86454956 Msa0433840:intron 40.0%
TTCTTAACAGCTTCATGCCA+AGG - chr3_2:86454957-86454976 None:intergenic 40.0%
! GAGGGACAATTTTGTGTAAG+TGG - chr3_2:86455138-86455157 None:intergenic 40.0%
GCGAAATAGCAACTATGATG+AGG - chr3_2:86455157-86455176 None:intergenic 40.0%
GATAACTCTGACATTGGAAC+TGG + chr3_2:86455199-86455218 Msa0433840:CDS 40.0%
!! TCTGACATTGGAACTGGTTT+TGG + chr3_2:86455205-86455224 Msa0433840:CDS 40.0%
!!! GGAACTGGTTTTGGTCATTT+TGG + chr3_2:86455214-86455233 Msa0433840:CDS 40.0%
! GTTTTATACTGCGCTTTTGC+AGG + chr3_2:86455439-86455458 Msa0433840:intron 40.0%
GAAAGGTTACAAGAGAACCA+GGG + chr3_2:86455498-86455517 Msa0433840:CDS 40.0%
AGCTCAAACCTATAACCACT+AGG - chr3_2:86455566-86455585 None:intergenic 40.0%
! CGAAGCATCACTTTGCATAA+GGG - chr3_2:86455614-86455633 None:intergenic 40.0%
! TCGAAGCATCACTTTGCATA+AGG - chr3_2:86455615-86455634 None:intergenic 40.0%
TAGATGCAAACACATGCAAG+AGG + chr3_2:86455727-86455746 Msa0433840:intron 40.0%
! GTAGTTGTTACCTTTTCCTC+AGG - chr3_2:86455823-86455842 None:intergenic 40.0%
AAAAGGTAATGCCAGGAACA+CGG - chr3_2:86455875-86455894 None:intergenic 40.0%
GGCGTCACTAATTATGACAA+AGG + chr3_2:86456038-86456057 Msa0433840:CDS 40.0%
CATGCATTACACATTCATGG+AGG - chr3_2:86456137-86456156 None:intergenic 40.0%
CGACATGCATTACACATTCA+TGG - chr3_2:86456140-86456159 None:intergenic 40.0%
TGAACAGATTGCTATAGGCA+CGG + chr3_2:86456186-86456205 Msa0433840:intron 40.0%
GCAGAAGCAATCAAATCATG+TGG + chr3_2:86456226-86456245 Msa0433840:CDS 40.0%
GAAGCAATCAAATCATGTGG+AGG + chr3_2:86456229-86456248 Msa0433840:CDS 40.0%
!! TTGGTGTTGATACCAGGTAA+GGG - chr3_2:86456277-86456296 None:intergenic 40.0%
CATACCAATTTCCAACCATC+AGG - chr3_2:86456319-86456338 None:intergenic 40.0%
CTGATGGTTGGAAATTGGTA+TGG + chr3_2:86456317-86456336 Msa0433840:intron 40.0%
CAGAGGTTAACATAGTAGGA+AGG - chr3_2:86456389-86456408 None:intergenic 40.0%
AAACAATGAGCGACATACAG+AGG - chr3_2:86456406-86456425 None:intergenic 40.0%
GAACTAGAGTGACAATAGCA+TGG + chr3_2:86456491-86456510 Msa0433840:exon 40.0%
CCCTCCAATCACTATATATG+AGG + chr3_2:86456604-86456623 Msa0433840:three_prime_UTR 40.0%
CCCTCATATATAGTGATTGG+AGG - chr3_2:86456608-86456627 None:intergenic 40.0%
CCAATCACTATATATGAGGG+GGG + chr3_2:86456608-86456627 Msa0433840:three_prime_UTR 40.0%
! GACAAACAGTTCTGGTTAGA+GGG - chr3_2:86456734-86456753 Msa0433850:CDS 40.0%
! AGACAAACAGTTCTGGTTAG+AGG - chr3_2:86456735-86456754 Msa0433850:CDS 40.0%
GCCATTGCCATGGATTTCTA+TGG + chr3_2:86450573-86450592 Msa0433840:CDS 45.0%
GCCATAGAAATCCATGGCAA+TGG - chr3_2:86450577-86450596 None:intergenic 45.0%
CAGAACCCTCTTCACCTTAA+TGG + chr3_2:86450599-86450618 Msa0433840:CDS 45.0%
CCTTCTCCATTAAGGTGAAG+AGG - chr3_2:86450608-86450627 None:intergenic 45.0%
CCTCTTCACCTTAATGGAGA+AGG + chr3_2:86450605-86450624 Msa0433840:CDS 45.0%
AATGTGGTAGAAGGTCTTGG+TGG - chr3_2:86450723-86450742 None:intergenic 45.0%
GGAAATGTGGTAGAAGGTCT+TGG - chr3_2:86450726-86450745 None:intergenic 45.0%
TAGAGTAATGAAGGGGAAGG+AGG - chr3_2:86450780-86450799 None:intergenic 45.0%
TGGTAGAGTAATGAAGGGGA+AGG - chr3_2:86450783-86450802 None:intergenic 45.0%
AGTAGATGTTTCCTTCGTGG+CGG - chr3_2:86450824-86450843 None:intergenic 45.0%
TGGAGTAGATGTTTCCTTCG+TGG - chr3_2:86450827-86450846 None:intergenic 45.0%
TACTCCATCGCAGTTTCCAA+GGG + chr3_2:86450840-86450859 Msa0433840:CDS 45.0%
GCCTGTAAAGATGAAACCCT+TGG - chr3_2:86450859-86450878 None:intergenic 45.0%
AACACGAATTCGGCTACTGT+TGG - chr3_2:86450883-86450902 None:intergenic 45.0%
ACAGTAGCCGAATTCGTGTT+TGG + chr3_2:86450883-86450902 Msa0433840:CDS 45.0%
GCTGCTTCCAAACACGAATT+CGG - chr3_2:86450893-86450912 None:intergenic 45.0%
CAGCCAGATTGCATGGATAA+AGG + chr3_2:86450909-86450928 Msa0433840:CDS 45.0%
ACGACAGAACAGTCAAAGCT+TGG + chr3_2:86451207-86451226 Msa0433840:CDS 45.0%
CATCTGAACTTCCTGAGTAG+AGG - chr3_2:86451463-86451482 None:intergenic 45.0%
CTCTACTCAGGAAGTTCAGA+TGG + chr3_2:86451461-86451480 Msa0433840:CDS 45.0%
! AACCATGGAGGGTTTTTGCA+GGG + chr3_2:86451527-86451546 Msa0433840:CDS 45.0%
!! CAACACAAAGTACCGCGAAA+CGG - chr3_2:86451556-86451575 None:intergenic 45.0%
CGCGGTACTTTGTGTTGAAA+CGG + chr3_2:86451559-86451578 Msa0433840:CDS 45.0%
TGTTGAAACGGTAGGGAACA+TGG + chr3_2:86451571-86451590 Msa0433840:CDS 45.0%
GTAGGGAACATGGTGTTTAG+TGG + chr3_2:86451581-86451600 Msa0433840:CDS 45.0%
CAAGCAGCCAAACATCTAAC+AGG - chr3_2:86451695-86451714 None:intergenic 45.0%
TTTGGCTGCTTGTCTTGAGA+TGG + chr3_2:86451703-86451722 Msa0433840:CDS 45.0%
!!! CATCGTTGCCGGTTTTCTTA+CGG + chr3_2:86452407-86452426 Msa0433840:intron 45.0%
! TGGCTTTGCCGTAAGAAAAC+CGG - chr3_2:86452418-86452437 None:intergenic 45.0%
! GTTTTCTTACGGCAAAGCCA+CGG + chr3_2:86452418-86452437 Msa0433840:intron 45.0%
GATGAGTGCCACAAAGAAAG+AGG - chr3_2:86452448-86452467 None:intergenic 45.0%
!! GTCCAGTTTTGTCACCTTCT+TGG + chr3_2:86452665-86452684 Msa0433840:intron 45.0%
ACCCAAGAAGGTGACAAAAC+TGG - chr3_2:86452670-86452689 None:intergenic 45.0%
ATCTCTCCCCTATGAAACAG+AGG + chr3_2:86453172-86453191 Msa0433840:intron 45.0%
!!! CTCAAGAGGTGTTTTTCGTG+TGG - chr3_2:86453806-86453825 None:intergenic 45.0%
! AACTTGGACCCCTTTGGTTT+AGG + chr3_2:86453934-86453953 Msa0433840:intron 45.0%
GTTGTGGTCCTAAACCAAAG+GGG - chr3_2:86453945-86453964 None:intergenic 45.0%
AACTGCAGCATTAACGTAGG+AGG + chr3_2:86454199-86454218 Msa0433840:intron 45.0%
CTCTTTCATCTTCTCACCAC+CGG + chr3_2:86454377-86454396 Msa0433840:intron 45.0%
!! AATGAAGGCTTTGAGGCTGA+GGG - chr3_2:86454432-86454451 None:intergenic 45.0%
TTCGCGGTGATTGCAGATTA+TGG + chr3_2:86455172-86455191 Msa0433840:intron 45.0%
GGTGATTGCAGATTATGGAG+TGG + chr3_2:86455177-86455196 Msa0433840:intron 45.0%
GGAGTGGATAACTCTGACAT+TGG + chr3_2:86455193-86455212 Msa0433840:CDS 45.0%
TGTAAAGGCAAAAGGGGGAA+AGG + chr3_2:86455481-86455500 Msa0433840:CDS 45.0%
GGAAAGGTTACAAGAGAACC+AGG + chr3_2:86455497-86455516 Msa0433840:CDS 45.0%
TGCAAAGTGATGCTTCGAGT+AGG + chr3_2:86455617-86455636 Msa0433840:CDS 45.0%
AAAGTGATGCTTCGAGTAGG+CGG + chr3_2:86455620-86455639 Msa0433840:CDS 45.0%
AGAAGGCTATGACACGATCA+AGG - chr3_2:86455649-86455668 None:intergenic 45.0%
GATAGACAACCCTGAGGAAA+AGG + chr3_2:86455810-86455829 Msa0433840:CDS 45.0%
TCAGTACACAGTAGCCAAGT+TGG + chr3_2:86455965-86455984 Msa0433840:intron 45.0%
CAGTACACAGTAGCCAAGTT+GGG + chr3_2:86455966-86455985 Msa0433840:intron 45.0%
! ACAGTAGCCAAGTTGGGATA+TGG + chr3_2:86455972-86455991 Msa0433840:CDS 45.0%
TTCAGGACCATATCCCAACT+TGG - chr3_2:86455982-86456001 None:intergenic 45.0%
GGATATGGTCCTGAAGCTAA+TGG + chr3_2:86455987-86456006 Msa0433840:CDS 45.0%
! AGAACAGGACCATTAGCTTC+AGG - chr3_2:86455999-86456018 None:intergenic 45.0%
!! ATGGTCCTGTTCTAGAACTG+AGG + chr3_2:86456006-86456025 Msa0433840:CDS 45.0%
CAAAGGAAATGGCTATGCAC+AGG + chr3_2:86456055-86456074 Msa0433840:CDS 45.0%
!! CTTGGTGTTGATACCAGGTA+AGG - chr3_2:86456278-86456297 None:intergenic 45.0%
!! ACGATCTTGGTGTTGATACC+AGG - chr3_2:86456283-86456302 None:intergenic 45.0%
CACCAAGATCGTTGTTTGCT+TGG + chr3_2:86456291-86456310 Msa0433840:CDS 45.0%
GTCCAAGCAAACAACGATCT+TGG - chr3_2:86456296-86456315 None:intergenic 45.0%
CCCCCCTCATATATAGTGAT+TGG - chr3_2:86456611-86456630 None:intergenic 45.0%
TCACTATATATGAGGGGGGA+AGG + chr3_2:86456612-86456631 Msa0433840:three_prime_UTR 45.0%
CACTATATATGAGGGGGGAA+GGG + chr3_2:86456613-86456632 Msa0433840:three_prime_UTR 45.0%
CGCCGCAATTTAACATGTAC+TGG + chr3_2:86456705-86456724 Msa0433840:three_prime_UTR 45.0%
GGAAGGGAAAAGGAAGACAA+CGG - chr3_2:86456827-86456846 Msa0433850:CDS 45.0%
! GTTGTCTTCCTTTTCCCTTC+CGG + chr3_2:86456826-86456845 Msa0433840:three_prime_UTR 45.0%
! TTGTCTTCCTTTTCCCTTCC+GGG + chr3_2:86456827-86456846 Msa0433840:three_prime_UTR 45.0%
CCATAACAGGAGTTCTTCAC+TGG - chr3_2:86457188-86457207 Msa0433850:intron 45.0%
CCAGTGAAGAACTCCTGTTA+TGG + chr3_2:86457185-86457204 Msa0433840:three_prime_UTR 45.0%
AGCAAACATCTTGACAGCAC+TGG - chr3_2:86457385-86457404 Msa0433850:CDS 45.0%
TACTACGATTCCAACACTCG+AGG - chr3_2:86457430-86457449 Msa0433850:CDS 45.0%
! TGAAGGCACGTATGGAGAAA+GGG - chr3_2:86457461-86457480 Msa0433850:CDS 45.0%
! TTGAAGGCACGTATGGAGAA+AGG - chr3_2:86457462-86457481 Msa0433850:CDS 45.0%
!! TGCTACTTTGAAGGCACGTA+TGG - chr3_2:86457469-86457488 Msa0433850:CDS 45.0%
AACTAAATGGCAGCATTGCG+AGG - chr3_2:86457495-86457514 Msa0433850:intron 45.0%
!!! TTTTTATTGTAAAAAAAAAA+AGG + chr3_2:86453323-86453342 Msa0433840:intron 5.0%
CCACGGTGATTGTGGAAATG+TGG - chr3_2:86450739-86450758 None:intergenic 50.0%
CCACATTTCCACAATCACCG+TGG + chr3_2:86450736-86450755 Msa0433840:CDS 50.0%
!! GAAAGTGTCCACGGTGATTG+TGG - chr3_2:86450747-86450766 None:intergenic 50.0%
!! GGAAGAGAGGAAAGTGTCCA+CGG - chr3_2:86450756-86450775 None:intergenic 50.0%
AGTAATGAAGGGGAAGGAGG+TGG - chr3_2:86450777-86450796 None:intergenic 50.0%
CTACTCCATCGCAGTTTCCA+AGG + chr3_2:86450839-86450858 Msa0433840:CDS 50.0%
GAAACCCTTGGAAACTGCGA+TGG - chr3_2:86450847-86450866 None:intergenic 50.0%
TTGGAAGCAGCCAGATTGCA+TGG + chr3_2:86450902-86450921 Msa0433840:CDS 50.0%
! CAACCATGGAGGGTTTTTGC+AGG + chr3_2:86451526-86451545 Msa0433840:CDS 50.0%
CGGGACCAAGACAATGCATT+TGG + chr3_2:86451864-86451883 Msa0433840:intron 50.0%
!! AAAGGTGTCGACGATGACGA+CGG + chr3_2:86452102-86452121 Msa0433840:intron 50.0%
GCGACGACAGTGAGATTGAA+TGG - chr3_2:86452363-86452382 None:intergenic 50.0%
! GTCGCCGTTGTTATTGCTAC+CGG + chr3_2:86452378-86452397 Msa0433840:intron 50.0%
GACGCCGGTAGCAATAACAA+CGG - chr3_2:86452385-86452404 None:intergenic 50.0%
ACAAAGAAAGAGGAGGACCG+TGG - chr3_2:86452438-86452457 None:intergenic 50.0%
ACGGTCCTCCTCTTTCTTTG+TGG + chr3_2:86452437-86452456 Msa0433840:intron 50.0%
GAGTGCCACAAAGAAAGAGG+AGG - chr3_2:86452445-86452464 None:intergenic 50.0%
TCTCCCCTATGAAACAGAGG+AGG + chr3_2:86453175-86453194 Msa0433840:intron 50.0%
GTGCCTCCTCTGTTTCATAG+GGG - chr3_2:86453181-86453200 None:intergenic 50.0%
GGTGCCTCCTCTGTTTCATA+GGG - chr3_2:86453182-86453201 None:intergenic 50.0%
CACACCGACCAAACATGTCT+TGG - chr3_2:86454168-86454187 None:intergenic 50.0%
TTTCATCTTCTCACCACCGG+TGG + chr3_2:86454380-86454399 Msa0433840:intron 50.0%
GAGATTACCAATACCACCGG+TGG - chr3_2:86454396-86454415 None:intergenic 50.0%
!! ATGAAGGCTTTGAGGCTGAG+GGG - chr3_2:86454431-86454450 None:intergenic 50.0%
!! GAATGAAGGCTTTGAGGCTG+AGG - chr3_2:86454433-86454452 None:intergenic 50.0%
TCTTCTGCTGCTGCTGCATT+TGG + chr3_2:86454491-86454510 Msa0433840:CDS 50.0%
AGAGAACCAGGGTCTGTCAA+AGG + chr3_2:86455509-86455528 Msa0433840:CDS 50.0%
GCTTCCGTTGAAGATCCTAG+TGG + chr3_2:86455548-86455567 Msa0433840:CDS 50.0%
TTGCATAAGGGTTCGCGAGT+AGG - chr3_2:86455602-86455621 None:intergenic 50.0%
CCTCAGGGTTGTCTATCTTG+TGG - chr3_2:86455807-86455826 None:intergenic 50.0%
CCACAAGATAGACAACCCTG+AGG + chr3_2:86455804-86455823 Msa0433840:CDS 50.0%
TTGATACCAGGTAAGGGTCC+AGG - chr3_2:86456271-86456290 None:intergenic 50.0%
GTTGTTTGCTTGGACCCTGA+TGG + chr3_2:86456301-86456320 Msa0433840:CDS 50.0%
TTTGCTTGGACCCTGATGGT+TGG + chr3_2:86456305-86456324 Msa0433840:CDS 50.0%
GGACCCTGATGGTTGGAAAT+TGG + chr3_2:86456312-86456331 Msa0433840:CDS 50.0%
AGATGTTTCCTTCGTGGCGG+TGG - chr3_2:86450821-86450840 None:intergenic 55.0%
GACCCTGCAAAAACCCTCCA+TGG - chr3_2:86451532-86451551 None:intergenic 55.0%
TTTGCAGGGTCACCGTTTCG+CGG + chr3_2:86451541-86451560 Msa0433840:CDS 55.0%
TCTTCTCCCTCGTAGCAGCA+AGG - chr3_2:86451987-86452006 None:intergenic 55.0%
GTGTCCACCTATTACCACGC+CGG + chr3_2:86452007-86452026 Msa0433840:intron 55.0%
GGGTGCCTCCTCTGTTTCAT+AGG - chr3_2:86453183-86453202 None:intergenic 55.0%
CTTCTCACCACCGGTGGTAT+TGG + chr3_2:86454386-86454405 Msa0433840:intron 55.0%
!! TGAAGGCTTTGAGGCTGAGG+GGG - chr3_2:86454430-86454449 None:intergenic 55.0%
GAGCTACCTTTGACAGACCC+TGG - chr3_2:86455518-86455537 None:intergenic 55.0%
TGCATGGCTATCCGTGTTCC+TGG + chr3_2:86455861-86455880 Msa0433840:intron 55.0%
GGGAAGATTATCCGCGAACC+TGG + chr3_2:86456250-86456269 Msa0433840:CDS 55.0%
TGTGCAGCGATATCCCAGCT+TGG - chr3_2:86456853-86456872 Msa0433850:CDS 55.0%
TGGGATATCGCTGCACACTC+CGG + chr3_2:86456856-86456875 Msa0433840:three_prime_UTR 55.0%
CTGGACTGTGTCTTCAGAGG+AGG - chr3_2:86457366-86457385 Msa0433850:CDS 55.0%
GCACTGGACTGTGTCTTCAG+AGG - chr3_2:86457369-86457388 Msa0433850:CDS 55.0%
CCAACACTCGAGGAGAAGTG+CGG - chr3_2:86457420-86457439 Msa0433850:CDS 55.0%
GCACGTATGGAGAAAGGGCT+TGG - chr3_2:86457456-86457475 Msa0433850:CDS 55.0%
!! GCGAGGAGCTGCTACTTTGA+AGG - chr3_2:86457478-86457497 Msa0433850:CDS 55.0%
AGGGGAAGGAGGTGGAAGAG+AGG - chr3_2:86450769-86450788 None:intergenic 60.0%
GTTTCCTTCGTGGCGGTGGA+GGG - chr3_2:86450817-86450836 None:intergenic 60.0%
TGTTTCCTTCGTGGCGGTGG+AGG - chr3_2:86450818-86450837 None:intergenic 60.0%
GTGTCCGGCGTGGTAATAGG+TGG - chr3_2:86452014-86452033 None:intergenic 60.0%
GTCGTGTCCGGCGTGGTAAT+AGG - chr3_2:86452017-86452036 None:intergenic 60.0%
TCCTTCTCCGTCGTCGTGTC+CGG - chr3_2:86452029-86452048 None:intergenic 60.0%
AGAAGGAGGCGGCGATGTGA+AGG + chr3_2:86452042-86452061 Msa0433840:intron 60.0%
CGGCGATGTGAAGGCTATGC+CGG + chr3_2:86452051-86452070 Msa0433840:intron 60.0%
GAAGGCTATGCCGGCAACGA+CGG + chr3_2:86452060-86452079 Msa0433840:intron 60.0%
CAGGTAAGGGTCCAGGTTCG+CGG - chr3_2:86456264-86456283 None:intergenic 60.0%
AGCTTGGCCCGGAAGGGAAA+AGG - chr3_2:86456837-86456856 Msa0433850:CDS 60.0%
! TTTTCCCTTCCGGGCCAAGC+TGG + chr3_2:86456836-86456855 Msa0433840:three_prime_UTR 60.0%
TTTCCCTTCCGGGCCAAGCT+GGG + chr3_2:86456837-86456856 Msa0433840:three_prime_UTR 60.0%
TATCCCAGCTTGGCCCGGAA+GGG - chr3_2:86456843-86456862 Msa0433850:CDS 60.0%
ATATCCCAGCTTGGCCCGGA+AGG - chr3_2:86456844-86456863 Msa0433850:CDS 60.0%
AGCGATATCCCAGCTTGGCC+CGG - chr3_2:86456848-86456867 Msa0433850:CDS 60.0%
CCGCACTTCTCCTCGAGTGT+TGG + chr3_2:86457417-86457436 Msa0433840:three_prime_UTR 60.0%
GGTGGAGGGAGGCGATGCAA+TGG - chr3_2:86450803-86450822 None:intergenic 65.0%
TGGGACGCCTTGCTGCTACG+AGG + chr3_2:86451977-86451996 Msa0433840:intron 65.0%
GGGACGCCTTGCTGCTACGA+GGG + chr3_2:86451978-86451997 Msa0433840:intron 65.0%
TACCACGCCGGACACGACGA+CGG + chr3_2:86452019-86452038 Msa0433840:intron 65.0%
GGACACGACGACGGAGAAGG+AGG + chr3_2:86452028-86452047 Msa0433840:intron 65.0%
CACGACGACGGAGAAGGAGG+CGG + chr3_2:86452031-86452050 Msa0433840:intron 65.0%
ACCGGCGTCGTCATCGTTGC+CGG + chr3_2:86452396-86452415 Msa0433840:intron 65.0%
ACCGGCAACGATGACGACGC+CGG - chr3_2:86452400-86452419 None:intergenic 65.0%
CGCGAACCTGGACCCTTACC+TGG + chr3_2:86456262-86456281 Msa0433840:CDS 65.0%
TCCTTCGTGGCGGTGGAGGG+AGG - chr3_2:86450814-86450833 None:intergenic 70.0%
GCCGGACACGACGACGGAGA+AGG + chr3_2:86452025-86452044 Msa0433840:intron 70.0%
TCCGGCATGGCCGTCGTTGC+CGG - chr3_2:86452073-86452092 None:intergenic 70.0%
GCCTCCCTCCACCGCCACGA+AGG + chr3_2:86450810-86450829 Msa0433840:CDS 75.0%
CTCCGTCGTCGTGTCCGGCG+TGG - chr3_2:86452024-86452043 None:intergenic 75.0%
GCCGGCAACGACGGCCATGC+CGG + chr3_2:86452069-86452088 Msa0433840:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 86450567 86457623 86450567 ID=Msa0433840;Name=Msa0433840
chr3_2 mRNA 86450567 86457623 86450567 ID=Msa0433840-mRNA-1;Parent=Msa0433840;Name=Msa0433840-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.77|0.7|1|0.88|0.8|10|936|643
chr3_2 exon 86450567 86451781 86450567 ID=Msa0433840-mRNA-1:exon:24950;Parent=Msa0433840-mRNA-1
chr3_2 exon 86454488 86454512 86454488 ID=Msa0433840-mRNA-1:exon:24951;Parent=Msa0433840-mRNA-1
chr3_2 exon 86454992 86455063 86454992 ID=Msa0433840-mRNA-1:exon:24952;Parent=Msa0433840-mRNA-1
chr3_2 exon 86455188 86455252 86455188 ID=Msa0433840-mRNA-1:exon:24953;Parent=Msa0433840-mRNA-1
chr3_2 exon 86455461 86455676 86455461 ID=Msa0433840-mRNA-1:exon:24954;Parent=Msa0433840-mRNA-1
chr3_2 exon 86455784 86455831 86455784 ID=Msa0433840-mRNA-1:exon:24955;Parent=Msa0433840-mRNA-1
chr3_2 exon 86455969 86456076 86455969 ID=Msa0433840-mRNA-1:exon:24956;Parent=Msa0433840-mRNA-1
chr3_2 exon 86456193 86456333 86456193 ID=Msa0433840-mRNA-1:exon:24957;Parent=Msa0433840-mRNA-1
chr3_2 exon 86456461 86456943 86456461 ID=Msa0433840-mRNA-1:exon:24958;Parent=Msa0433840-mRNA-1
chr3_2 exon 86457129 86457623 86457129 ID=Msa0433840-mRNA-1:exon:24959;Parent=Msa0433840-mRNA-1
chr3_2 CDS 86450567 86451781 86450567 ID=Msa0433840-mRNA-1:cds;Parent=Msa0433840-mRNA-1
chr3_2 CDS 86454488 86454512 86454488 ID=Msa0433840-mRNA-1:cds;Parent=Msa0433840-mRNA-1
chr3_2 CDS 86454992 86455063 86454992 ID=Msa0433840-mRNA-1:cds;Parent=Msa0433840-mRNA-1
chr3_2 CDS 86455188 86455252 86455188 ID=Msa0433840-mRNA-1:cds;Parent=Msa0433840-mRNA-1
chr3_2 CDS 86455461 86455676 86455461 ID=Msa0433840-mRNA-1:cds;Parent=Msa0433840-mRNA-1
chr3_2 CDS 86455784 86455831 86455784 ID=Msa0433840-mRNA-1:cds;Parent=Msa0433840-mRNA-1
chr3_2 CDS 86455969 86456076 86455969 ID=Msa0433840-mRNA-1:cds;Parent=Msa0433840-mRNA-1
chr3_2 CDS 86456193 86456333 86456193 ID=Msa0433840-mRNA-1:cds;Parent=Msa0433840-mRNA-1
chr3_2 CDS 86456461 86456502 86456461 ID=Msa0433840-mRNA-1:cds;Parent=Msa0433840-mRNA-1
chr3_2 three_prime_UTR 86456503 86456943 86456503 ID=Msa0433840-mRNA-1:three_prime_utr;Parent=Msa0433840-mRNA-1
chr3_2 three_prime_UTR 86457129 86457623 86457129 ID=Msa0433840-mRNA-1:three_prime_utr;Parent=Msa0433840-mRNA-1
Gene Sequence

>Msa0433840

ATGCATGCCATTGCCATGGATTTCTATGGCAACAGAACCCTCTTCACCTTAATGGAGAAGGAAAAAACAGAACAACAAGAATCCCCCAACATTCATCTTCATGTCCAAATCCAATCTCACAGAGAATCAAATGAACAAGACATTCAATTTAGTCCACCAAGACCTTCTACCACATTTCCACAATCACCGTGGACACTTTCCTCTCTTCCACCTCCTTCCCCTTCATTACTCTACCATTGCATCGCCTCCCTCCACCGCCACGAAGGAAACATCTACTCCATCGCAGTTTCCAAGGGTTTCATCTTTACAGGCTCCAACAGTAGCCGAATTCGTGTTTGGAAGCAGCCAGATTGCATGGATAAAGGGTATCTCAAATCAAACTCCGGTGAAATCCGCACCATTTTAGCTTATAACAACATGGTTTTCTCCTCACACAAAGATCACAAAATCAGAATATGGAACTTCAACGTCTCAGAAAACTTCAAATCCAAGAAAGTAGCTACTCTTCCTAGAAGAAGCAAAAACTCCTTTCTAAACTTCAGCAGAACAAAAAACAACAACTCACACAATTACAAACACAAAGATTTAGTTTCTTGCATGGCTTATTACCATTCAGAAGGACTCTTATACACTGGCTCACACGACAGAACAGTCAAAGCTTGGAGAATCTCTGATAGAAAATGCGTCGACTCATTTGTAGCACATGAAGATCATGTAAACTCTATCTTAGTAAACCAAGATGATGGTTGTGTTTTCACATGTTCTTCTGATGGATCAGTGAAAATATGGAGAAGGGTCTACACAGAAAACTCACACACATTAACAATGACTCTGAAGTTTCAACATTCACCAGTTAACACACTTGCATTGAGTTCTTCATTCAACCATTGTTTCCTCTACTCAGGAAGTTCAGATGGAATGATAAATTTTTGGGAGAAGGAAAGGTTGTGTTATAGATTCAACCATGGAGGGTTTTTGCAGGGTCACCGTTTCGCGGTACTTTGTGTTGAAACGGTAGGGAACATGGTGTTTAGTGGATCAGAAGATACAACAATAAGAGTGTGGAGAAGAGAGGAAGATAGTTGTTATCATGAGTGTTTGATGGTTTTGGATGGACATAGAGGACCTGTTAGATGTTTGGCTGCTTGTCTTGAGATGGAGAAAGTTGTTGTAGGGTTTTTGGTTTACAGTGCTAGTTTGGACCAAACATTTAAGTTCTCTTCTGCTGCTGCTGCATTTGAAGACAAATATTCAAATGCTTTTCTTGGATACGGGCCTGAAGATTCCAGTTTTACAGTTGAACTTACTTATAATTATGGAGTGGATAACTCTGACATTGGAACTGGTTTTGGTCATTTTGGTATTATAGCTGAAGATGTTTCCAAGACAGTAGATATTGTAAAGGCAAAAGGGGGAAAGGTTACAAGAGAACCAGGGTCTGTCAAAGGTAGCTCTATAGTAACTGCTTCCGTTGAAGATCCTAGTGGTTATAGGTTTGAGCTTTTGGAGAAAAGACCTACTCGCGAACCCTTATGCAAAGTGATGCTTCGAGTAGGCGGCGACCTTGATCGTGTCATAGCCTTCTATGAAAAAGCTGTTGGCATGAAACTTCTCCACAAGATAGACAACCCTGAGGAAAAGTACACAGTAGCCAAGTTGGGATATGGTCCTGAAGCTAATGGTCCTGTTCTAGAACTGAGGTATAACTACGGCGTCACTAATTATGACAAAGGAAATGGCTATGCACAGATTGCTATAGGCACGGATGATGTCTATAAGACTGCAGAAGCAATCAAATCATGTGGAGGGAAGATTATCCGCGAACCTGGACCCTTACCTGGTATCAACACCAAGATCGTTGTTTGCTTGGACCCTGATGGTTGGAAATTGGTATTTGTTGATAATGTTGATTTTCTGAAGGAACTAGAGTGA
Protein sequence

>Msa0433840

MHAIAMDFYGNRTLFTLMEKEKTEQQESPNIHLHVQIQSHRESNEQDIQFSPPRPSTTFPQSPWTLSSLPPPSPSLLYHCIASLHRHEGNIYSIAVSKGFIFTGSNSSRIRVWKQPDCMDKGYLKSNSGEIRTILAYNNMVFSSHKDHKIRIWNFNVSENFKSKKVATLPRRSKNSFLNFSRTKNNNSHNYKHKDLVSCMAYYHSEGLLYTGSHDRTVKAWRISDRKCVDSFVAHEDHVNSILVNQDDGCVFTCSSDGSVKIWRRVYTENSHTLTMTLKFQHSPVNTLALSSSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCVETVGNMVFSGSEDTTIRVWRREEDSCYHECLMVLDGHRGPVRCLAACLEMEKVVVGFLVYSASLDQTFKFSSAAAAFEDKYSNAFLGYGPEDSSFTVELTYNYGVDNSDIGTGFGHFGIIAEDVSKTVDIVKAKGGKVTREPGSVKGSSIVTASVEDPSGYRFELLEKRPTREPLCKVMLRVGGDLDRVIAFYEKAVGMKLLHKIDNPEEKYTVAKLGYGPEANGPVLELRYNYGVTNYDKGNGYAQIAIGTDDVYKTAEAIKSCGGKIIREPGPLPGINTKIVVCLDPDGWKLVFVDNVDFLKELE*