Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433820 | XP_024634338.1 | 97.436 | 351 | 7 | 2 | 1 | 350 | 476 | 825 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433820 | sp|Q8W593|LGUC_ARATH | 66.476 | 349 | 104 | 4 | 9 | 350 | 8 | 350 | 2.01e-165 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433820 | A0A072V303 | 97.436 | 351 | 7 | 2 | 1 | 350 | 472 | 821 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004180 | Msa0433820 | 0.800511 | 1.392761e-48 | -8.615850e-47 |
| Msa0018610 | Msa0433820 | 0.806390 | 8.420940e-50 | -8.615850e-47 |
| Msa0047660 | Msa0433820 | 0.818446 | 1.952213e-52 | -8.615850e-47 |
| Msa0075080 | Msa0433820 | 0.813053 | 3.110163e-51 | -8.615850e-47 |
| Msa0118700 | Msa0433820 | 0.814509 | 1.485711e-51 | -8.615850e-47 |
| Msa0122930 | Msa0433820 | 0.809986 | 1.442613e-50 | -8.615850e-47 |
| Msa0138680 | Msa0433820 | 0.817118 | 3.891251e-52 | -8.615850e-47 |
| Msa0145590 | Msa0433820 | 0.802397 | 5.719693e-49 | -8.615850e-47 |
| Msa0147070 | Msa0433820 | 0.801011 | 1.100932e-48 | -8.615850e-47 |
| Msa0167570 | Msa0433820 | 0.816069 | 6.688164e-52 | -8.615850e-47 |
| Msa0168470 | Msa0433820 | 0.811823 | 5.773080e-51 | -8.615850e-47 |
| Msa0224180 | Msa0433820 | 0.801326 | 9.492079e-49 | -8.615850e-47 |
| Msa0382050 | Msa0433820 | 0.813974 | 1.951009e-51 | -8.615850e-47 |
| Msa0386230 | Msa0433820 | 0.807579 | 4.717897e-50 | -8.615850e-47 |
| Msa0386310 | Msa0433820 | 0.801409 | 9.127829e-49 | -8.615850e-47 |
| Msa0433820 | Msa0433840 | 0.843882 | 1.065910e-58 | -8.615850e-47 |
| Msa0433820 | Msa0433890 | 0.801070 | 1.070939e-48 | -8.615850e-47 |
| Msa0433820 | Msa0439090 | 0.801722 | 7.874104e-49 | -8.615850e-47 |
| Msa0433820 | Msa0444770 | 0.814616 | 1.406771e-51 | -8.615850e-47 |
| Msa0433820 | Msa0462240 | 0.803461 | 3.447816e-49 | -8.615850e-47 |
| Msa0433820 | Msa0478740 | 0.805035 | 1.620859e-49 | -8.615850e-47 |
| Msa0433820 | Msa0506700 | 0.804124 | 2.511072e-49 | -8.615850e-47 |
| Msa0433820 | Msa0514630 | 0.822467 | 2.332678e-53 | -8.615850e-47 |
| Msa0433820 | Msa0519100 | 0.800518 | 1.388229e-48 | -8.615850e-47 |
| Msa0433820 | Msa0527420 | 0.803147 | 4.004411e-49 | -8.615850e-47 |
| Msa0433820 | Msa0560380 | 0.826161 | 3.157244e-54 | -8.615850e-47 |
| Msa0433820 | Msa0608250 | 0.829625 | 4.635892e-55 | -8.615850e-47 |
| Msa0433820 | Msa0619450 | 0.801768 | 7.703938e-49 | -8.615850e-47 |
| Msa0433820 | Msa0639040 | 0.840248 | 9.745842e-58 | -8.615850e-47 |
| Msa0433820 | Msa0659580 | 0.801538 | 8.590719e-49 | -8.615850e-47 |
| Msa0433820 | Msa0691320 | 0.809985 | 1.443085e-50 | -8.615850e-47 |
| Msa0433820 | Msa0706790 | 0.818395 | 2.004247e-52 | -8.615850e-47 |
| Msa0433820 | Msa0706860 | 0.808112 | 3.633977e-50 | -8.615850e-47 |
| Msa0433820 | Msa0784780 | 0.808206 | 3.470799e-50 | -8.615850e-47 |
| Msa0433820 | Msa0790380 | 0.806389 | 8.423107e-50 | -8.615850e-47 |
| Msa0433820 | Msa0808500 | 0.802862 | 4.586407e-49 | -8.615850e-47 |
| Msa0433820 | Msa0858250 | 0.816151 | 6.410979e-52 | -8.615850e-47 |
| Msa0433820 | Msa0868500 | 0.809688 | 1.672200e-50 | -8.615850e-47 |
| Msa0433820 | Msa0868510 | 0.802827 | 4.663559e-49 | -8.615850e-47 |
| Msa0433820 | Msa0882480 | 0.807769 | 4.298369e-50 | -8.615850e-47 |
| Msa0433820 | Msa0978540 | 0.803546 | 3.311582e-49 | -8.615850e-47 |
| Msa0433820 | Msa0995130 | 0.801819 | 7.519506e-49 | -8.615850e-47 |
| Msa0433820 | Msa1052800 | 0.819919 | 9.017398e-53 | -8.615850e-47 |
| Msa0433820 | Msa1058550 | 0.802011 | 6.869710e-49 | -8.615850e-47 |
| Msa0433820 | Msa1091400 | 0.811070 | 8.414910e-51 | -8.615850e-47 |
| Msa0433820 | Msa1091460 | 0.811997 | 5.291352e-51 | -8.615850e-47 |
| Msa0433820 | Msa1126320 | 0.801447 | 8.966622e-49 | -8.615850e-47 |
| Msa0433820 | Msa1156100 | 0.800580 | 1.348139e-48 | -8.615850e-47 |
| Msa0433820 | Msa1161550 | 0.803769 | 2.976737e-49 | -8.615850e-47 |
| Msa0433820 | Msa1163130 | 0.819223 | 1.299748e-52 | -8.615850e-47 |
| Msa0433820 | Msa1164720 | 0.817311 | 3.521393e-52 | -8.615850e-47 |
| Msa0433820 | Msa1190670 | 0.804378 | 2.223173e-49 | -8.615850e-47 |
| Msa0433820 | Msa1197740 | 0.805435 | 1.336818e-49 | -8.615850e-47 |
| Msa0433820 | Msa1203320 | 0.825375 | 4.852106e-54 | -8.615850e-47 |
| Msa0433820 | Msa1244940 | 0.819572 | 1.082391e-52 | -8.615850e-47 |
| Msa0433820 | Msa1250490 | 0.803544 | 3.313576e-49 | -8.615850e-47 |
| Msa0433820 | Msa1251440 | 0.816841 | 4.491261e-52 | -8.615850e-47 |
| Msa0433820 | Msa1278120 | 0.813803 | 2.126987e-51 | -8.615850e-47 |
| Msa0433820 | Msa1297550 | 0.818625 | 1.778045e-52 | -8.615850e-47 |
| Msa0433820 | Msa1325260 | 0.811922 | 5.493967e-51 | -8.615850e-47 |
| Msa0433820 | Msa1350130 | 0.824388 | 8.294418e-54 | -8.615850e-47 |
| Msa0433820 | Msa1386820 | 0.800697 | 1.276332e-48 | -8.615850e-47 |
| Msa0433820 | Msa1403590 | 0.822378 | 2.445406e-53 | -8.615850e-47 |
| Msa0433820 | Msa1419760 | 0.817498 | 3.196748e-52 | -8.615850e-47 |
| Msa0433820 | Msa1443280 | 0.816365 | 5.742869e-52 | -8.615850e-47 |
| Msa0433820 | Msa1462700 | 0.811238 | 7.735790e-51 | -8.615850e-47 |
| Msa0241720 | Msa0433820 | 0.814030 | 1.895674e-51 | -8.615850e-47 |
| Msa0252150 | Msa0433820 | 0.802763 | 4.808290e-49 | -8.615850e-47 |
| Msa0270230 | Msa0433820 | 0.810079 | 1.377850e-50 | -8.615850e-47 |
| Msa0307820 | Msa0433820 | 0.820001 | 8.636533e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433820 | MtrunA17_Chr3g0140091 | 97.436 | 351 | 7 | 2 | 1 | 350 | 1 | 350 | 0.0 | 696 |
| Msa0433820 | MtrunA17_Chr4g0019621 | 93.952 | 248 | 9 | 2 | 103 | 350 | 7 | 248 | 8.39e-168 | 467 |
| Msa0433820 | MtrunA17_Chr4g0019621 | 37.870 | 169 | 93 | 3 | 49 | 210 | 76 | 239 | 3.22e-28 | 110 |
| Msa0433820 | MtrunA17_Chr8g0390251 | 66.092 | 348 | 100 | 5 | 15 | 350 | 6 | 347 | 1.87e-164 | 462 |
| Msa0433820 | MtrunA17_Chr6g0486631 | 63.664 | 333 | 111 | 4 | 24 | 350 | 20 | 348 | 6.57e-151 | 428 |
| Msa0433820 | MtrunA17_Chr2g0288571 | 66.549 | 284 | 90 | 2 | 71 | 350 | 5 | 287 | 2.80e-137 | 391 |
| Msa0433820 | MtrunA17_Chr4g0075021 | 62.094 | 277 | 100 | 2 | 78 | 350 | 7 | 282 | 4.94e-128 | 368 |
| Msa0433820 | MtrunA17_Chr4g0075001 | 60.159 | 251 | 95 | 2 | 104 | 350 | 16 | 265 | 6.83e-110 | 321 |
| Msa0433820 | MtrunA17_Chr4g0075001 | 39.726 | 146 | 82 | 2 | 73 | 212 | 113 | 258 | 4.50e-27 | 107 |
| Msa0433820 | MtrunA17_Chr4g0028391 | 30.263 | 152 | 71 | 6 | 90 | 212 | 79 | 224 | 2.08e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433820 | AT1G67280.1 | 66.476 | 349 | 104 | 4 | 9 | 350 | 8 | 350 | 2.04e-166 | 468 |
| Msa0433820 | AT1G67280.2 | 78.626 | 262 | 55 | 1 | 89 | 350 | 2 | 262 | 1.30e-151 | 427 |
| Msa0433820 | AT1G11840.6 | 68.531 | 286 | 84 | 3 | 69 | 350 | 39 | 322 | 3.04e-138 | 395 |
| Msa0433820 | AT1G11840.4 | 69.534 | 279 | 80 | 2 | 76 | 350 | 6 | 283 | 8.57e-138 | 393 |
| Msa0433820 | AT1G11840.1 | 69.534 | 279 | 80 | 2 | 76 | 350 | 6 | 283 | 8.57e-138 | 393 |
| Msa0433820 | AT1G11840.3 | 69.534 | 279 | 80 | 2 | 76 | 350 | 6 | 283 | 8.57e-138 | 393 |
| Msa0433820 | AT1G11840.2 | 69.534 | 279 | 80 | 2 | 76 | 350 | 6 | 283 | 8.57e-138 | 393 |
| Msa0433820 | AT1G11840.5 | 67.890 | 218 | 69 | 1 | 76 | 293 | 6 | 222 | 6.85e-105 | 307 |
| Msa0433820 | AT1G11840.5 | 48.800 | 125 | 63 | 1 | 218 | 342 | 18 | 141 | 1.55e-32 | 121 |
| Msa0433820 | AT1G08110.3 | 28.767 | 146 | 77 | 4 | 90 | 210 | 30 | 173 | 5.74e-12 | 64.3 |
| Msa0433820 | AT1G08110.2 | 28.767 | 146 | 77 | 4 | 90 | 210 | 30 | 173 | 5.74e-12 | 64.3 |
| Msa0433820 | AT1G08110.1 | 28.767 | 146 | 77 | 4 | 90 | 210 | 30 | 173 | 5.74e-12 | 64.3 |
| Msa0433820 | AT1G08110.4 | 28.767 | 146 | 77 | 4 | 90 | 210 | 80 | 223 | 7.81e-12 | 64.7 |
Find 145 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCAAGATGTTTGCTTCTT+TGG | 0.173797 | 3_2:+86437463 | Msa0433820:three_prime_UTR |
| GAAATCGTCTATTATCATTT+TGG | 0.175472 | 3_2:-86434707 | None:intergenic |
| TGGTTATAGGTTTGAGCTTT+TGG | 0.209102 | 3_2:+86435642 | Msa0433820:CDS |
| CAGACCAAAACTTGTTTAAC+TGG | 0.236813 | 3_2:+86434682 | Msa0433820:CDS |
| TATGACATTGGAACTGGTTT+TGG | 0.261238 | 3_2:+86435279 | Msa0433820:CDS |
| GCATTTGAATATTTGTCTTC+TGG | 0.281084 | 3_2:-86435062 | None:intergenic |
| CACCAAGATCGTTGTTTGCT+TGG | 0.286526 | 3_2:+86436365 | Msa0433820:CDS |
| CAATATTAATTCAAATTTGC+AGG | 0.290334 | 3_2:-86437222 | Msa0433830:intron |
| TATGGACATTTAAAATAGTA+TGG | 0.291129 | 3_2:+86437277 | Msa0433820:three_prime_UTR |
| AGAAAATCTAATGAACTAAA+TGG | 0.295512 | 3_2:-86437579 | Msa0433830:intron |
| TTAAGATATGGCCTATAAAA+TGG | 0.305715 | 3_2:-86436965 | Msa0433830:intron |
| TTGAAGATCCTAGTGGTTAT+AGG | 0.311803 | 3_2:+86435629 | Msa0433820:CDS |
| CGTAAACTGCTTTACACATT+TGG | 0.312441 | 3_2:+86437316 | Msa0433820:three_prime_UTR |
| TGTATACAAGGTTGGAGATT+TGG | 0.312497 | 3_2:+86434737 | Msa0433820:CDS |
| GGACCCTGATGGTTGGAAAT+TGG | 0.313975 | 3_2:+86436386 | Msa0433820:CDS |
| GGACCCAGTTAAACAAGTTT+TGG | 0.318521 | 3_2:-86434686 | None:intergenic |
| AGTAAGTTCAACTGTAAAAC+TGG | 0.328366 | 3_2:-86435111 | None:intergenic |
| TAGAAATGAACTCAGATTGT+AGG | 0.340268 | 3_2:+86437637 | Msa0433820:three_prime_UTR |
| TAACAATGGCTTCATTGAAA+TGG | 0.351493 | 3_2:-86437360 | Msa0433830:intron |
| CGAAGCATCACTTTGCATAA+GGG | 0.378451 | 3_2:-86435685 | None:intergenic |
| CTTCTCACCACCGGTGGTAT+TGG | 0.379414 | 3_2:+86434459 | Msa0433820:CDS |
| GTGTTTGAACAGATTGCTAT+AGG | 0.380967 | 3_2:+86436255 | Msa0433820:intron |
| CTTTAAGCAATGTTAAGATA+TGG | 0.384502 | 3_2:-86436977 | Msa0433830:intron |
| CCCTCCAATCACTATATATG+AGG | 0.386883 | 3_2:+86436678 | Msa0433820:three_prime_UTR |
| TCGAAGCATCACTTTGCATA+AGG | 0.390181 | 3_2:-86435686 | None:intergenic |
| TGTAGCAGATGGTAACATTA+AGG | 0.398859 | 3_2:-86434361 | None:intergenic |
| CGCCGCAATTTAACATGTAC+TGG | 0.399496 | 3_2:+86436779 | Msa0433820:three_prime_UTR |
| ACTAATTATGACAAAGGAAA+TGG | 0.400635 | 3_2:+86436118 | Msa0433820:CDS |
| TAGATATTGTAAAGGCAAAA+GGG | 0.417731 | 3_2:+86435548 | Msa0433820:CDS |
| TTCTTAATTTCAAAGGCTGT+TGG | 0.417949 | 3_2:+86435843 | Msa0433820:intron |
| ATTAAGCATGAGCAACATAA+TGG | 0.427319 | 3_2:-86437680 | Msa0433830:intron |
| GTAAAGAAGACAAACAGTTC+TGG | 0.435761 | 3_2:-86436813 | Msa0433830:CDS |
| GATAACTATGACATTGGAAC+TGG | 0.436005 | 3_2:+86435273 | Msa0433820:CDS |
| GTAGATATTGTAAAGGCAAA+AGG | 0.439002 | 3_2:+86435547 | Msa0433820:CDS |
| AGACAAACAGTTCTGGTTAG+AGG | 0.439485 | 3_2:-86436806 | Msa0433830:CDS |
| ACTGTAAAACTGGAATCTTC+AGG | 0.439492 | 3_2:-86435101 | None:intergenic |
| CATACCAATTTCCAACCATC+AGG | 0.443644 | 3_2:-86436390 | None:intergenic |
| CTTCTCAAACGTACAAGAAA+AGG | 0.445894 | 3_2:-86437410 | Msa0433830:intron |
| CTCTTTCATCTTCTCACCAC+CGG | 0.446718 | 3_2:+86434450 | Msa0433820:CDS |
| GCGAGGAGCTGCTACTTTGA+AGG | 0.446885 | 3_2:-86437549 | Msa0433830:CDS |
| TCTCAATTACTTGGTGCAAA+AGG | 0.451126 | 3_2:+86434606 | Msa0433820:CDS |
| GATAGACAACCCTGAGGAAA+AGG | 0.451770 | 3_2:+86435884 | Msa0433820:CDS |
| CGCGAACCTGGACCCTTACC+TGG | 0.452930 | 3_2:+86436336 | Msa0433820:CDS |
| CAGTACACAGTAGCCAAGTT+GGG | 0.453964 | 3_2:+86436040 | Msa0433820:intron |
| TTTCCCTTCCGGGCCAAGCT+GGG | 0.455831 | 3_2:+86436911 | Msa0433820:three_prime_UTR |
| GCACGTATGGAGAAAGGGCT+TGG | 0.457388 | 3_2:-86437527 | Msa0433830:CDS |
| CTTTACAATATCTACTGTCT+TGG | 0.457793 | 3_2:-86435539 | None:intergenic |
| GGGAAGATTATCCGCGAACC+TGG | 0.460673 | 3_2:+86436324 | Msa0433820:CDS |
| AGAACAGGACCATTAGCTTC+AGG | 0.460964 | 3_2:-86436070 | None:intergenic |
| TACTTCAATGTTTGTAACAA+TGG | 0.463397 | 3_2:-86437374 | Msa0433830:intron |
| GTCCAAGCAAACAACGATCT+TGG | 0.465002 | 3_2:-86436367 | None:intergenic |
| ACAGTAGCCAAGTTGGGATA+TGG | 0.468535 | 3_2:+86436046 | Msa0433820:CDS |
| TAGGAGATCCAAGACATGTT+TGG | 0.469553 | 3_2:+86434230 | Msa0433820:five_prime_UTR |
| GGAGTGGATAACTATGACAT+TGG | 0.474181 | 3_2:+86435267 | Msa0433820:CDS |
| CTTGGTGTTGATACCAGGTA+AGG | 0.479311 | 3_2:-86436349 | None:intergenic |
| AGCTTGGCCCGGAAGGGAAA+AGG | 0.486161 | 3_2:-86436908 | Msa0433830:CDS |
| CCATAACAGGAGTTCTTCAC+TGG | 0.490229 | 3_2:-86437259 | Msa0433830:intron |
| AGCAAACATCTTGACAGCAC+TGG | 0.491176 | 3_2:-86437456 | Msa0433830:CDS |
| TTGAAGGCACGTATGGAGAA+AGG | 0.492486 | 3_2:-86437533 | Msa0433830:CDS |
| TCAGTACACAGTAGCCAAGT+TGG | 0.494157 | 3_2:+86436039 | Msa0433820:intron |
| TTATACCTCAGTTCTAGAAC+AGG | 0.496272 | 3_2:-86436085 | None:intergenic |
| CTACCACAATCTCAATTACT+TGG | 0.496491 | 3_2:+86434597 | Msa0433820:CDS |
| ATTTCTACATGTTGTATACA+AGG | 0.498386 | 3_2:+86434725 | Msa0433820:CDS |
| CTACATGTTGTATACAAGGT+TGG | 0.505014 | 3_2:+86434729 | Msa0433820:CDS |
| TTCTTCACTAAACTTATAGT+AGG | 0.505475 | 3_2:+86436607 | Msa0433820:three_prime_UTR |
| GGATATGGTCCTGAAGCTAA+TGG | 0.505691 | 3_2:+86436061 | Msa0433820:CDS |
| ATATCCCAGCTTGGCCCGGA+AGG | 0.509324 | 3_2:-86436915 | Msa0433830:CDS |
| CCTCAGGGTTGTCTATCTTG+TGG | 0.510152 | 3_2:-86435878 | None:intergenic |
| TGCTACTTTGAAGGCACGTA+TGG | 0.510225 | 3_2:-86437540 | Msa0433830:CDS |
| CACACCGACCAAACATGTCT+TGG | 0.512298 | 3_2:-86434238 | None:intergenic |
| TTCTTAACAGCTTCATGCCA+AGG | 0.512814 | 3_2:-86435028 | None:intergenic |
| CCAGTGAAGAACTCCTGTTA+TGG | 0.520211 | 3_2:+86437259 | Msa0433820:three_prime_UTR |
| TTGCATAAGGGTTCGCGAGT+AGG | 0.520825 | 3_2:-86435673 | None:intergenic |
| TTTGCTTGGACCCTGATGGT+TGG | 0.526751 | 3_2:+86436379 | Msa0433820:CDS |
| CAAGACAGTAGATATTGTAA+AGG | 0.527171 | 3_2:+86435540 | Msa0433820:CDS |
| TGAAGGCACGTATGGAGAAA+GGG | 0.527933 | 3_2:-86437532 | Msa0433830:CDS |
| TTGATACCAGGTAAGGGTCC+AGG | 0.528793 | 3_2:-86436342 | None:intergenic |
| AGCGATATCCCAGCTTGGCC+CGG | 0.529305 | 3_2:-86436919 | Msa0433830:CDS |
| CGAGAAGATGAAGATGATGA+TGG | 0.533711 | 3_2:-86434417 | None:intergenic |
| GCACCAAGTAATTGAGATTG+TGG | 0.539338 | 3_2:-86434600 | None:intergenic |
| CCCTCATATATAGTGATTGG+AGG | 0.540771 | 3_2:-86436679 | None:intergenic |
| AGATTCTACACTGAATGCCT+TGG | 0.547114 | 3_2:+86435011 | Msa0433820:intron |
| GACAAACAGTTCTGGTTAGA+GGG | 0.548395 | 3_2:-86436805 | Msa0433830:CDS |
| CCGCACTTCTCCTCGAGTGT+TGG | 0.548746 | 3_2:+86437491 | Msa0433820:three_prime_UTR |
| GGTCTTAATGTTGTAGCAGA+TGG | 0.550784 | 3_2:-86434372 | None:intergenic |
| CAGGTAAGGGTCCAGGTTCG+CGG | 0.554222 | 3_2:-86436335 | None:intergenic |
| TAAGTTTAGTGAAGAAGTGT+AGG | 0.554352 | 3_2:-86436600 | None:intergenic |
| ACGATCTTGGTGTTGATACC+AGG | 0.555602 | 3_2:-86436354 | None:intergenic |
| TTCAGGACCATATCCCAACT+TGG | 0.559056 | 3_2:-86436053 | None:intergenic |
| CCTCCAATCACTATATATGA+GGG | 0.563961 | 3_2:+86436679 | Msa0433820:three_prime_UTR |
| GGAAAGGTTACAAGAGAACC+AGG | 0.573831 | 3_2:+86435571 | Msa0433820:CDS |
| TAAACTTATAGTAGGCTACT+AGG | 0.574564 | 3_2:+86436615 | Msa0433820:three_prime_UTR |
| AACTAAATGGCAGCATTGCG+AGG | 0.578223 | 3_2:-86437566 | Msa0433830:intron |
| AGAAGGCTATGACACGATCA+AGG | 0.584516 | 3_2:-86435720 | None:intergenic |
| GTTGTTTGCTTGGACCCTGA+TGG | 0.585011 | 3_2:+86436375 | Msa0433820:CDS |
| CAAAGGAAATGGCTATGCAC+AGG | 0.585145 | 3_2:+86436129 | Msa0433820:CDS |
| TCCAATCACTATATATGAGG+GGG | 0.586566 | 3_2:+86436681 | Msa0433820:three_prime_UTR |
| AGAGAACCAGGGTCTGTCAA+AGG | 0.592272 | 3_2:+86435583 | Msa0433820:CDS |
| AGATATTGTAAAGGCAAAAG+GGG | 0.595704 | 3_2:+86435549 | Msa0433820:CDS |
| TGTGCAGCGATATCCCAGCT+TGG | 0.596256 | 3_2:-86436924 | Msa0433830:CDS |
| TATCCCAGCTTGGCCCGGAA+GGG | 0.598830 | 3_2:-86436914 | Msa0433830:CDS |
| GCACTGGACTGTGTCTTCAG+AGG | 0.601236 | 3_2:-86437440 | Msa0433830:CDS |
| GAGCTACCTTTGACAGACCC+TGG | 0.602880 | 3_2:-86435589 | None:intergenic |
| AAAATGGCAGATATAGTCAC+CGG | 0.606175 | 3_2:-86436949 | Msa0433830:intron |
| ATGGTCCTGTTCTAGAACTG+AGG | 0.609502 | 3_2:+86436080 | Msa0433820:CDS |
| CTGGACTGTGTCTTCAGAGG+AGG | 0.616030 | 3_2:-86437437 | Msa0433830:CDS |
| TGAACAGATTGCTATAGGCA+CGG | 0.617304 | 3_2:+86436260 | Msa0433820:intron |
| TGGGATATCGCTGCACACTC+CGG | 0.618172 | 3_2:+86436930 | Msa0433820:three_prime_UTR |
| AACTGCAGCATTAACGTAGG+AGG | 0.618630 | 3_2:+86434272 | Msa0433820:five_prime_UTR |
| CTCCAGTACATGTTAAATTG+CGG | 0.619673 | 3_2:-86436781 | Msa0433830:CDS |
| CCTCATATATAGTGATTGGA+GGG | 0.621721 | 3_2:-86436678 | None:intergenic |
| GAAGCAATCAAATCATGTGG+AGG | 0.622375 | 3_2:+86436303 | Msa0433820:CDS |
| AGACCAAAACTTGTTTAACT+GGG | 0.622893 | 3_2:+86434683 | Msa0433820:CDS |
| TTTCATCTTCTCACCACCGG+TGG | 0.624511 | 3_2:+86434453 | Msa0433820:CDS |
| AAGCAATCAAATCATGTGGA+GGG | 0.625960 | 3_2:+86436304 | Msa0433820:CDS |
| GGCGTCACTAATTATGACAA+AGG | 0.632082 | 3_2:+86436112 | Msa0433820:CDS |
| GCAGAAGCAATCAAATCATG+TGG | 0.633710 | 3_2:+86436300 | Msa0433820:CDS |
| GATATTGTAAAGGCAAAAGG+GGG | 0.634435 | 3_2:+86435550 | Msa0433820:CDS |
| AGAATTGTTCAAAATAGCAG+AGG | 0.639847 | 3_2:+86434632 | Msa0433820:CDS |
| TTGGTGTTGATACCAGGTAA+GGG | 0.644641 | 3_2:-86436348 | None:intergenic |
| AGCTCAAACCTATAACCACT+AGG | 0.647923 | 3_2:-86435637 | None:intergenic |
| CTCCAATCACTATATATGAG+GGG | 0.648518 | 3_2:+86436680 | Msa0433820:three_prime_UTR |
| AGAGAGATTACCAATACCAC+CGG | 0.649254 | 3_2:-86434469 | None:intergenic |
| AAAGTGATGCTTCGAGTAGG+CGG | 0.650254 | 3_2:+86435694 | Msa0433820:CDS |
| GTAAACAAAGACACAGACAA+AGG | 0.651538 | 3_2:+86434296 | Msa0433820:five_prime_UTR |
| GAACTAGAGTGACAATAGCA+TGG | 0.651608 | 3_2:+86436565 | Msa0433820:exon |
| CTAGAACTGAGGTATAACTA+CGG | 0.651744 | 3_2:+86436091 | Msa0433820:CDS |
| AGATCCAAGACATGTTTGGT+CGG | 0.656332 | 3_2:+86434234 | Msa0433820:five_prime_UTR |
| CCAATAGTTACTTAGTAACG+TGG | 0.661266 | 3_2:+86434194 | None:intergenic |
| ATACCAATTTCCAACCATCA+GGG | 0.661992 | 3_2:-86436389 | None:intergenic |
| AGATTAATAGAATTTGAATG+CGG | 0.671794 | 3_2:-86436838 | Msa0433830:CDS |
| GGAAGGGAAAAGGAAGACAA+CGG | 0.672432 | 3_2:-86436898 | Msa0433830:CDS |
| TGCAAAGTGATGCTTCGAGT+AGG | 0.675317 | 3_2:+86435691 | Msa0433820:CDS |
| ATAACCACTAGGATCTTCAA+CGG | 0.678581 | 3_2:-86435626 | None:intergenic |
| CCAATCACTATATATGAGGG+GGG | 0.683789 | 3_2:+86436682 | Msa0433820:three_prime_UTR |
| ACTAACTGCAGCATTAACGT+AGG | 0.687811 | 3_2:+86434269 | Msa0433820:five_prime_UTR |
| TACTACGATTCCAACACTCG+AGG | 0.689356 | 3_2:-86437501 | Msa0433830:CDS |
| ACGTGGCAGTATAATAACGT+AGG | 0.689625 | 3_2:+86434211 | Msa0433820:five_prime_UTR |
| CCAACACTCGAGGAGAAGTG+CGG | 0.708360 | 3_2:-86437491 | Msa0433830:CDS |
| GCTTCCGTTGAAGATCCTAG+TGG | 0.716192 | 3_2:+86435622 | Msa0433820:CDS |
| GGTGATTGCAGATTATGGAG+TGG | 0.722660 | 3_2:+86435251 | Msa0433820:intron |
| GTGATGCTACAACTACAACA+AGG | 0.730518 | 3_2:-86434393 | None:intergenic |
| GAGATTACCAATACCACCGG+TGG | 0.731281 | 3_2:-86434466 | None:intergenic |
| GAAAGGTTACAAGAGAACCA+GGG | 0.783522 | 3_2:+86435572 | Msa0433820:CDS |
| CCACAAGATAGACAACCCTG+AGG | 0.800561 | 3_2:+86435878 | Msa0433820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACATACTAAAAAATAATA+AGG | - | chr3_2:86436753-86436772 | None:intergenic | 10.0% |
| !! | ATAAATAAATACATGAATGA+AGG | - | chr3_2:86434521-86434540 | None:intergenic | 15.0% |
| !!! | ATCTTAATACTACTTTTTTT+TGG | + | chr3_2:86435148-86435167 | Msa0433820:intron | 15.0% |
| !! | AGTTAATGTAATTATTATGA+TGG | + | chr3_2:86435763-86435782 | Msa0433820:intron | 15.0% |
| !!! | GATTTTTATGAAAAAATTGT+TGG | - | chr3_2:86436641-86436660 | None:intergenic | 15.0% |
| !!! | TTATTTTTTAGTATGTTACT+TGG | + | chr3_2:86436755-86436774 | Msa0433820:three_prime_UTR | 15.0% |
| !!! | TATTTTTTAGTATGTTACTT+GGG | + | chr3_2:86436756-86436775 | Msa0433820:three_prime_UTR | 15.0% |
| !!! | AAATATTCAAATGCTTTTCT+TGG | + | chr3_2:86435071-86435090 | Msa0433820:CDS | 20.0% |
| !! | TTCAATGTTCATCATAATAA+GGG | - | chr3_2:86435428-86435447 | None:intergenic | 20.0% |
| !! | ATTCAATGTTCATCATAATA+AGG | - | chr3_2:86435429-86435448 | None:intergenic | 20.0% |
| !! | ATTACAAACATCAATCAAAA+AGG | - | chr3_2:86435966-86435985 | None:intergenic | 20.0% |
| !!! | GGTTTTTTATGATTATTACA+TGG | + | chr3_2:86436184-86436203 | Msa0433820:intron | 20.0% |
| !! | AACATATTACATCAAATACA+AGG | - | chr3_2:86436432-86436451 | None:intergenic | 20.0% |
| !! | AGATTAATAGAATTTGAATG+CGG | - | chr3_2:86436841-86436860 | Msa0433830:CDS | 20.0% |
| !!! | TATGATTTGTTAATGAATGT+AGG | + | chr3_2:86437181-86437200 | Msa0433820:intron | 20.0% |
| !! | CAATATTAATTCAAATTTGC+AGG | - | chr3_2:86437225-86437244 | Msa0433830:CDS | 20.0% |
| !!! | TATGGACATTTAAAATAGTA+TGG | + | chr3_2:86437277-86437296 | Msa0433820:three_prime_UTR | 20.0% |
| !! | AGAAAATCTAATGAACTAAA+TGG | - | chr3_2:86437582-86437601 | Msa0433830:intron | 20.0% |
| !!! | TTAGATTTTCTCTTATTTTG+TGG | + | chr3_2:86437591-86437610 | Msa0433820:three_prime_UTR | 20.0% |
| !! | GAAATCGTCTATTATCATTT+TGG | - | chr3_2:86434710-86434729 | None:intergenic | 25.0% |
| ! | ATTTCTACATGTTGTATACA+AGG | + | chr3_2:86434725-86434744 | Msa0433820:CDS | 25.0% |
| !! | CTAGACAATTAAGACTATTT+TGG | + | chr3_2:86435491-86435510 | Msa0433820:intron | 25.0% |
| ! | TAGATATTGTAAAGGCAAAA+GGG | + | chr3_2:86435548-86435567 | Msa0433820:CDS | 25.0% |
| ! | CTTGTCTTTCTTAATTTCAA+AGG | + | chr3_2:86435836-86435855 | Msa0433820:intron | 25.0% |
| ! | ACTAATTATGACAAAGGAAA+TGG | + | chr3_2:86436118-86436137 | Msa0433820:CDS | 25.0% |
| !! | TCTTTTTCTATTTTCAGAAG+AGG | + | chr3_2:86436162-86436181 | Msa0433820:intron | 25.0% |
| !! | CTTTTTCTATTTTCAGAAGA+GGG | + | chr3_2:86436163-86436182 | Msa0433820:intron | 25.0% |
| ! | ACTTATTTATTACTTCTTGC+AGG | + | chr3_2:86436513-86436532 | Msa0433820:intron | 25.0% |
| !!! | TGATAATGTTGATTTTCTGA+AGG | + | chr3_2:86436543-86436562 | Msa0433820:CDS | 25.0% |
| ! | TTCTTCACTAAACTTATAGT+AGG | + | chr3_2:86436607-86436626 | Msa0433820:three_prime_UTR | 25.0% |
| ! | TTAAGATATGGCCTATAAAA+TGG | - | chr3_2:86436968-86436987 | Msa0433830:intron | 25.0% |
| ! | CTTTAAGCAATGTTAAGATA+TGG | - | chr3_2:86436980-86436999 | Msa0433830:intron | 25.0% |
| !!! | AATATGCTTGCTTTTCATTT+TGG | + | chr3_2:86437076-86437095 | Msa0433820:intron | 25.0% |
| ! | AAATCATACACATGAGTTAT+TGG | - | chr3_2:86437169-86437188 | Msa0433830:intron | 25.0% |
| !!! | CTATTTTAAATGTCCATAAC+AGG | - | chr3_2:86437275-86437294 | Msa0433830:intron | 25.0% |
| ! | TACTTCAATGTTTGTAACAA+TGG | - | chr3_2:86437377-86437396 | Msa0433830:intron | 25.0% |
| AGAATTGTTCAAAATAGCAG+AGG | + | chr3_2:86434632-86434651 | Msa0433820:CDS | 30.0% | |
| ! | AGACCAAAACTTGTTTAACT+GGG | + | chr3_2:86434683-86434702 | Msa0433820:CDS | 30.0% |
| ! | AGTTTGTTTGAAAGAGCTTA+TGG | - | chr3_2:86434928-86434947 | None:intergenic | 30.0% |
| GCATTTGAATATTTGTCTTC+TGG | - | chr3_2:86435065-86435084 | None:intergenic | 30.0% | |
| ! | TCAAATGCTTTTCTTGGATA+CGG | + | chr3_2:86435077-86435096 | Msa0433820:CDS | 30.0% |
| AGTAAGTTCAACTGTAAAAC+TGG | - | chr3_2:86435114-86435133 | None:intergenic | 30.0% | |
| CTTTACAATATCTACTGTCT+TGG | - | chr3_2:86435542-86435561 | None:intergenic | 30.0% | |
| CAAGACAGTAGATATTGTAA+AGG | + | chr3_2:86435540-86435559 | Msa0433820:CDS | 30.0% | |
| GTAGATATTGTAAAGGCAAA+AGG | + | chr3_2:86435547-86435566 | Msa0433820:CDS | 30.0% | |
| AGATATTGTAAAGGCAAAAG+GGG | + | chr3_2:86435549-86435568 | Msa0433820:CDS | 30.0% | |
| !!! | TACACTCACTTTTTCATAGA+AGG | - | chr3_2:86435740-86435759 | None:intergenic | 30.0% |
| TTCTTAATTTCAAAGGCTGT+TGG | + | chr3_2:86435843-86435862 | Msa0433820:intron | 30.0% | |
| TGCATGTCGTTATAAGAATT+TGG | + | chr3_2:86436225-86436244 | Msa0433820:intron | 30.0% | |
| ! | TAAGTTTAGTGAAGAAGTGT+AGG | - | chr3_2:86436603-86436622 | None:intergenic | 30.0% |
| TAAACTTATAGTAGGCTACT+AGG | + | chr3_2:86436615-86436634 | Msa0433820:three_prime_UTR | 30.0% | |
| !!! | GACTATATCTGCCATTTTAT+AGG | + | chr3_2:86436954-86436973 | Msa0433820:three_prime_UTR | 30.0% |
| ! | AAGTTTTGCATACTGAAACT+TGG | + | chr3_2:86437020-86437039 | Msa0433820:intron | 30.0% |
| CTATTCAACATAATGACTAC+AGG | - | chr3_2:86437108-86437127 | Msa0433830:intron | 30.0% | |
| TAACAATGGCTTCATTGAAA+TGG | - | chr3_2:86437363-86437382 | Msa0433830:intron | 30.0% | |
| TAGAAATGAACTCAGATTGT+AGG | + | chr3_2:86437637-86437656 | Msa0433820:three_prime_UTR | 30.0% | |
| GTAAACAAAGACACAGACAA+AGG | + | chr3_2:86434296-86434315 | Msa0433820:five_prime_UTR | 35.0% | |
| TGTAGCAGATGGTAACATTA+AGG | - | chr3_2:86434364-86434383 | None:intergenic | 35.0% | |
| ATACATGAATGAAGGCTTTG+AGG | - | chr3_2:86434513-86434532 | None:intergenic | 35.0% | |
| CTACCACAATCTCAATTACT+TGG | + | chr3_2:86434597-86434616 | Msa0433820:CDS | 35.0% | |
| !! | TCTCAATTACTTGGTGCAAA+AGG | + | chr3_2:86434606-86434625 | Msa0433820:CDS | 35.0% |
| !! | AAACAAGTTTTGGTCTGGTT+GGG | - | chr3_2:86434679-86434698 | None:intergenic | 35.0% |
| !! | TAAACAAGTTTTGGTCTGGT+TGG | - | chr3_2:86434680-86434699 | None:intergenic | 35.0% |
| !! | CAGTTAAACAAGTTTTGGTC+TGG | - | chr3_2:86434684-86434703 | None:intergenic | 35.0% |
| ! | CAGACCAAAACTTGTTTAAC+TGG | + | chr3_2:86434682-86434701 | Msa0433820:CDS | 35.0% |
| CTACATGTTGTATACAAGGT+TGG | + | chr3_2:86434729-86434748 | Msa0433820:CDS | 35.0% | |
| TGTATACAAGGTTGGAGATT+TGG | + | chr3_2:86434737-86434756 | Msa0433820:CDS | 35.0% | |
| TTGAAAGAGCTTATGGAAAC+AGG | - | chr3_2:86434921-86434940 | None:intergenic | 35.0% | |
| ! | CAAATGCTTTTCTTGGATAC+GGG | + | chr3_2:86435078-86435097 | Msa0433820:CDS | 35.0% |
| ACTGTAAAACTGGAATCTTC+AGG | - | chr3_2:86435104-86435123 | None:intergenic | 35.0% | |
| CGAAATAGCAACTATGATGA+GGG | - | chr3_2:86435230-86435249 | None:intergenic | 35.0% | |
| !! | TCATCATAGTTGCTATTTCG+CGG | + | chr3_2:86435230-86435249 | Msa0433820:intron | 35.0% |
| GATAACTATGACATTGGAAC+TGG | + | chr3_2:86435273-86435292 | Msa0433820:CDS | 35.0% | |
| !! | TATGACATTGGAACTGGTTT+TGG | + | chr3_2:86435279-86435298 | Msa0433820:CDS | 35.0% |
| GATATTGTAAAGGCAAAAGG+GGG | + | chr3_2:86435550-86435569 | Msa0433820:CDS | 35.0% | |
| ATAACCACTAGGATCTTCAA+CGG | - | chr3_2:86435629-86435648 | None:intergenic | 35.0% | |
| TTGAAGATCCTAGTGGTTAT+AGG | + | chr3_2:86435629-86435648 | Msa0433820:CDS | 35.0% | |
| ! | TGGTTATAGGTTTGAGCTTT+TGG | + | chr3_2:86435642-86435661 | Msa0433820:CDS | 35.0% |
| ! | TAGTTGTTACCTTTTCCTCA+GGG | - | chr3_2:86435896-86435915 | None:intergenic | 35.0% |
| GAAAAGGTAACAACTACTTG+TGG | + | chr3_2:86435900-86435919 | Msa0433820:intron | 35.0% | |
| GTGGTTATTAATCAGATGCA+TGG | + | chr3_2:86435919-86435938 | Msa0433820:intron | 35.0% | |
| TCAATCAAAAAGGTAATGCC+AGG | - | chr3_2:86435956-86435975 | None:intergenic | 35.0% | |
| !! | TTATACCTCAGTTCTAGAAC+AGG | - | chr3_2:86436088-86436107 | None:intergenic | 35.0% |
| CTAGAACTGAGGTATAACTA+CGG | + | chr3_2:86436091-86436110 | Msa0433820:CDS | 35.0% | |
| GTGTTTGAACAGATTGCTAT+AGG | + | chr3_2:86436255-86436274 | Msa0433820:intron | 35.0% | |
| AAGCAATCAAATCATGTGGA+GGG | + | chr3_2:86436304-86436323 | Msa0433820:CDS | 35.0% | |
| ATACCAATTTCCAACCATCA+GGG | - | chr3_2:86436392-86436411 | None:intergenic | 35.0% | |
| CATACAGAGGTTAACATAGT+AGG | - | chr3_2:86436467-86436486 | None:intergenic | 35.0% | |
| CCTCATATATAGTGATTGGA+GGG | - | chr3_2:86436681-86436700 | None:intergenic | 35.0% | |
| CCTCCAATCACTATATATGA+GGG | + | chr3_2:86436679-86436698 | Msa0433820:three_prime_UTR | 35.0% | |
| CTCCAATCACTATATATGAG+GGG | + | chr3_2:86436680-86436699 | Msa0433820:three_prime_UTR | 35.0% | |
| TCCAATCACTATATATGAGG+GGG | + | chr3_2:86436681-86436700 | Msa0433820:three_prime_UTR | 35.0% | |
| CTCCAGTACATGTTAAATTG+CGG | - | chr3_2:86436784-86436803 | Msa0433830:CDS | 35.0% | |
| GTAAAGAAGACAAACAGTTC+TGG | - | chr3_2:86436816-86436835 | Msa0433830:CDS | 35.0% | |
| !! | GGCAAAAAGAGAGCATATTT+TGG | - | chr3_2:86436880-86436899 | Msa0433830:CDS | 35.0% |
| AAAATGGCAGATATAGTCAC+CGG | - | chr3_2:86436952-86436971 | Msa0433830:intron | 35.0% | |
| ATGAAAAGCAAGCATATTGC+AGG | - | chr3_2:86437074-86437093 | Msa0433830:CDS | 35.0% | |
| CGTAAACTGCTTTACACATT+TGG | + | chr3_2:86437316-86437335 | Msa0433820:three_prime_UTR | 35.0% | |
| CTTCTCAAACGTACAAGAAA+AGG | - | chr3_2:86437413-86437432 | Msa0433830:CDS | 35.0% | |
| TGTCAAGATGTTTGCTTCTT+TGG | + | chr3_2:86437463-86437482 | Msa0433820:three_prime_UTR | 35.0% | |
| ACGTGGCAGTATAATAACGT+AGG | + | chr3_2:86434211-86434230 | Msa0433820:five_prime_UTR | 40.0% | |
| TAGGAGATCCAAGACATGTT+TGG | + | chr3_2:86434230-86434249 | Msa0433820:five_prime_UTR | 40.0% | |
| AGATCCAAGACATGTTTGGT+CGG | + | chr3_2:86434234-86434253 | Msa0433820:five_prime_UTR | 40.0% | |
| ACTAACTGCAGCATTAACGT+AGG | + | chr3_2:86434269-86434288 | Msa0433820:five_prime_UTR | 40.0% | |
| GGTCTTAATGTTGTAGCAGA+TGG | - | chr3_2:86434375-86434394 | None:intergenic | 40.0% | |
| GTGATGCTACAACTACAACA+AGG | - | chr3_2:86434396-86434415 | None:intergenic | 40.0% | |
| CGAGAAGATGAAGATGATGA+TGG | - | chr3_2:86434420-86434439 | None:intergenic | 40.0% | |
| AGAGAGATTACCAATACCAC+CGG | - | chr3_2:86434472-86434491 | None:intergenic | 40.0% | |
| GCACCAAGTAATTGAGATTG+TGG | - | chr3_2:86434603-86434622 | None:intergenic | 40.0% | |
| ! | GGACCCAGTTAAACAAGTTT+TGG | - | chr3_2:86434689-86434708 | None:intergenic | 40.0% |
| AGATTCTACACTGAATGCCT+TGG | + | chr3_2:86435011-86435030 | Msa0433820:intron | 40.0% | |
| TTCTTAACAGCTTCATGCCA+AGG | - | chr3_2:86435031-86435050 | None:intergenic | 40.0% | |
| ! | GAGGGACAATTTTGTGTAAG+TGG | - | chr3_2:86435212-86435231 | None:intergenic | 40.0% |
| GCGAAATAGCAACTATGATG+AGG | - | chr3_2:86435231-86435250 | None:intergenic | 40.0% | |
| GGAGTGGATAACTATGACAT+TGG | + | chr3_2:86435267-86435286 | Msa0433820:CDS | 40.0% | |
| !!! | GGAACTGGTTTTGGTCATTT+TGG | + | chr3_2:86435288-86435307 | Msa0433820:CDS | 40.0% |
| ! | GTTTTATACTGCGCTTTTGC+AGG | + | chr3_2:86435513-86435532 | Msa0433820:intron | 40.0% |
| GAAAGGTTACAAGAGAACCA+GGG | + | chr3_2:86435572-86435591 | Msa0433820:CDS | 40.0% | |
| AGCTCAAACCTATAACCACT+AGG | - | chr3_2:86435640-86435659 | None:intergenic | 40.0% | |
| ! | CGAAGCATCACTTTGCATAA+GGG | - | chr3_2:86435688-86435707 | None:intergenic | 40.0% |
| ! | TCGAAGCATCACTTTGCATA+AGG | - | chr3_2:86435689-86435708 | None:intergenic | 40.0% |
| TAGATGCAAACACATGCAAG+AGG | + | chr3_2:86435801-86435820 | Msa0433820:intron | 40.0% | |
| ! | GTAGTTGTTACCTTTTCCTC+AGG | - | chr3_2:86435897-86435916 | None:intergenic | 40.0% |
| AAAAGGTAATGCCAGGAACA+CGG | - | chr3_2:86435949-86435968 | None:intergenic | 40.0% | |
| GGCGTCACTAATTATGACAA+AGG | + | chr3_2:86436112-86436131 | Msa0433820:CDS | 40.0% | |
| CATGCATTACACATTCATGG+AGG | - | chr3_2:86436211-86436230 | None:intergenic | 40.0% | |
| CGACATGCATTACACATTCA+TGG | - | chr3_2:86436214-86436233 | None:intergenic | 40.0% | |
| TGAACAGATTGCTATAGGCA+CGG | + | chr3_2:86436260-86436279 | Msa0433820:intron | 40.0% | |
| GCAGAAGCAATCAAATCATG+TGG | + | chr3_2:86436300-86436319 | Msa0433820:CDS | 40.0% | |
| GAAGCAATCAAATCATGTGG+AGG | + | chr3_2:86436303-86436322 | Msa0433820:CDS | 40.0% | |
| !! | TTGGTGTTGATACCAGGTAA+GGG | - | chr3_2:86436351-86436370 | None:intergenic | 40.0% |
| CATACCAATTTCCAACCATC+AGG | - | chr3_2:86436393-86436412 | None:intergenic | 40.0% | |
| CTGATGGTTGGAAATTGGTA+TGG | + | chr3_2:86436391-86436410 | Msa0433820:intron | 40.0% | |
| CAGAGGTTAACATAGTAGGA+AGG | - | chr3_2:86436463-86436482 | None:intergenic | 40.0% | |
| AAACAATGAGCGACATACAG+AGG | - | chr3_2:86436480-86436499 | None:intergenic | 40.0% | |
| GAACTAGAGTGACAATAGCA+TGG | + | chr3_2:86436565-86436584 | Msa0433820:exon | 40.0% | |
| CCCTCCAATCACTATATATG+AGG | + | chr3_2:86436678-86436697 | Msa0433820:three_prime_UTR | 40.0% | |
| CCCTCATATATAGTGATTGG+AGG | - | chr3_2:86436682-86436701 | None:intergenic | 40.0% | |
| CCAATCACTATATATGAGGG+GGG | + | chr3_2:86436682-86436701 | Msa0433820:three_prime_UTR | 40.0% | |
| ! | GACAAACAGTTCTGGTTAGA+GGG | - | chr3_2:86436808-86436827 | Msa0433830:CDS | 40.0% |
| ! | AGACAAACAGTTCTGGTTAG+AGG | - | chr3_2:86436809-86436828 | Msa0433830:CDS | 40.0% |
| AACTGCAGCATTAACGTAGG+AGG | + | chr3_2:86434272-86434291 | Msa0433820:five_prime_UTR | 45.0% | |
| CTCTTTCATCTTCTCACCAC+CGG | + | chr3_2:86434450-86434469 | Msa0433820:CDS | 45.0% | |
| !! | AATGAAGGCTTTGAGGCTGA+GGG | - | chr3_2:86434506-86434525 | None:intergenic | 45.0% |
| TTCGCGGTGATTGCAGATTA+TGG | + | chr3_2:86435246-86435265 | Msa0433820:intron | 45.0% | |
| GGTGATTGCAGATTATGGAG+TGG | + | chr3_2:86435251-86435270 | Msa0433820:intron | 45.0% | |
| TGTAAAGGCAAAAGGGGGAA+AGG | + | chr3_2:86435555-86435574 | Msa0433820:CDS | 45.0% | |
| GGAAAGGTTACAAGAGAACC+AGG | + | chr3_2:86435571-86435590 | Msa0433820:CDS | 45.0% | |
| TGCAAAGTGATGCTTCGAGT+AGG | + | chr3_2:86435691-86435710 | Msa0433820:CDS | 45.0% | |
| AAAGTGATGCTTCGAGTAGG+CGG | + | chr3_2:86435694-86435713 | Msa0433820:CDS | 45.0% | |
| AGAAGGCTATGACACGATCA+AGG | - | chr3_2:86435723-86435742 | None:intergenic | 45.0% | |
| GATAGACAACCCTGAGGAAA+AGG | + | chr3_2:86435884-86435903 | Msa0433820:CDS | 45.0% | |
| TCAGTACACAGTAGCCAAGT+TGG | + | chr3_2:86436039-86436058 | Msa0433820:intron | 45.0% | |
| CAGTACACAGTAGCCAAGTT+GGG | + | chr3_2:86436040-86436059 | Msa0433820:intron | 45.0% | |
| ! | ACAGTAGCCAAGTTGGGATA+TGG | + | chr3_2:86436046-86436065 | Msa0433820:CDS | 45.0% |
| TTCAGGACCATATCCCAACT+TGG | - | chr3_2:86436056-86436075 | None:intergenic | 45.0% | |
| GGATATGGTCCTGAAGCTAA+TGG | + | chr3_2:86436061-86436080 | Msa0433820:CDS | 45.0% | |
| ! | AGAACAGGACCATTAGCTTC+AGG | - | chr3_2:86436073-86436092 | None:intergenic | 45.0% |
| !! | ATGGTCCTGTTCTAGAACTG+AGG | + | chr3_2:86436080-86436099 | Msa0433820:CDS | 45.0% |
| CAAAGGAAATGGCTATGCAC+AGG | + | chr3_2:86436129-86436148 | Msa0433820:CDS | 45.0% | |
| !! | CTTGGTGTTGATACCAGGTA+AGG | - | chr3_2:86436352-86436371 | None:intergenic | 45.0% |
| !! | ACGATCTTGGTGTTGATACC+AGG | - | chr3_2:86436357-86436376 | None:intergenic | 45.0% |
| CACCAAGATCGTTGTTTGCT+TGG | + | chr3_2:86436365-86436384 | Msa0433820:CDS | 45.0% | |
| GTCCAAGCAAACAACGATCT+TGG | - | chr3_2:86436370-86436389 | None:intergenic | 45.0% | |
| CCCCCCTCATATATAGTGAT+TGG | - | chr3_2:86436685-86436704 | None:intergenic | 45.0% | |
| TCACTATATATGAGGGGGGA+AGG | + | chr3_2:86436686-86436705 | Msa0433820:three_prime_UTR | 45.0% | |
| CACTATATATGAGGGGGGAA+GGG | + | chr3_2:86436687-86436706 | Msa0433820:three_prime_UTR | 45.0% | |
| CGCCGCAATTTAACATGTAC+TGG | + | chr3_2:86436779-86436798 | Msa0433820:three_prime_UTR | 45.0% | |
| GGAAGGGAAAAGGAAGACAA+CGG | - | chr3_2:86436901-86436920 | Msa0433830:CDS | 45.0% | |
| ! | GTTGTCTTCCTTTTCCCTTC+CGG | + | chr3_2:86436900-86436919 | Msa0433820:three_prime_UTR | 45.0% |
| ! | TTGTCTTCCTTTTCCCTTCC+GGG | + | chr3_2:86436901-86436920 | Msa0433820:three_prime_UTR | 45.0% |
| CCATAACAGGAGTTCTTCAC+TGG | - | chr3_2:86437262-86437281 | Msa0433830:intron | 45.0% | |
| CCAGTGAAGAACTCCTGTTA+TGG | + | chr3_2:86437259-86437278 | Msa0433820:three_prime_UTR | 45.0% | |
| AGCAAACATCTTGACAGCAC+TGG | - | chr3_2:86437459-86437478 | Msa0433830:CDS | 45.0% | |
| TACTACGATTCCAACACTCG+AGG | - | chr3_2:86437504-86437523 | Msa0433830:CDS | 45.0% | |
| ! | TGAAGGCACGTATGGAGAAA+GGG | - | chr3_2:86437535-86437554 | Msa0433830:CDS | 45.0% |
| ! | TTGAAGGCACGTATGGAGAA+AGG | - | chr3_2:86437536-86437555 | Msa0433830:CDS | 45.0% |
| !! | TGCTACTTTGAAGGCACGTA+TGG | - | chr3_2:86437543-86437562 | Msa0433830:CDS | 45.0% |
| AACTAAATGGCAGCATTGCG+AGG | - | chr3_2:86437569-86437588 | Msa0433830:intron | 45.0% | |
| CACACCGACCAAACATGTCT+TGG | - | chr3_2:86434241-86434260 | None:intergenic | 50.0% | |
| TTTCATCTTCTCACCACCGG+TGG | + | chr3_2:86434453-86434472 | Msa0433820:CDS | 50.0% | |
| GAGATTACCAATACCACCGG+TGG | - | chr3_2:86434469-86434488 | None:intergenic | 50.0% | |
| !! | ATGAAGGCTTTGAGGCTGAG+GGG | - | chr3_2:86434505-86434524 | None:intergenic | 50.0% |
| !! | GAATGAAGGCTTTGAGGCTG+AGG | - | chr3_2:86434507-86434526 | None:intergenic | 50.0% |
| TCTTCTGCTGCTGCTGCATT+TGG | + | chr3_2:86434565-86434584 | Msa0433820:intron | 50.0% | |
| AGAGAACCAGGGTCTGTCAA+AGG | + | chr3_2:86435583-86435602 | Msa0433820:CDS | 50.0% | |
| GCTTCCGTTGAAGATCCTAG+TGG | + | chr3_2:86435622-86435641 | Msa0433820:CDS | 50.0% | |
| TTGCATAAGGGTTCGCGAGT+AGG | - | chr3_2:86435676-86435695 | None:intergenic | 50.0% | |
| CCTCAGGGTTGTCTATCTTG+TGG | - | chr3_2:86435881-86435900 | None:intergenic | 50.0% | |
| CCACAAGATAGACAACCCTG+AGG | + | chr3_2:86435878-86435897 | Msa0433820:CDS | 50.0% | |
| TTGATACCAGGTAAGGGTCC+AGG | - | chr3_2:86436345-86436364 | None:intergenic | 50.0% | |
| GTTGTTTGCTTGGACCCTGA+TGG | + | chr3_2:86436375-86436394 | Msa0433820:CDS | 50.0% | |
| TTTGCTTGGACCCTGATGGT+TGG | + | chr3_2:86436379-86436398 | Msa0433820:CDS | 50.0% | |
| GGACCCTGATGGTTGGAAAT+TGG | + | chr3_2:86436386-86436405 | Msa0433820:CDS | 50.0% | |
| CTTCTCACCACCGGTGGTAT+TGG | + | chr3_2:86434459-86434478 | Msa0433820:CDS | 55.0% | |
| !! | TGAAGGCTTTGAGGCTGAGG+GGG | - | chr3_2:86434504-86434523 | None:intergenic | 55.0% |
| GAGCTACCTTTGACAGACCC+TGG | - | chr3_2:86435592-86435611 | None:intergenic | 55.0% | |
| TGCATGGCTATCCGTGTTCC+TGG | + | chr3_2:86435935-86435954 | Msa0433820:intron | 55.0% | |
| GGGAAGATTATCCGCGAACC+TGG | + | chr3_2:86436324-86436343 | Msa0433820:CDS | 55.0% | |
| TGTGCAGCGATATCCCAGCT+TGG | - | chr3_2:86436927-86436946 | Msa0433830:CDS | 55.0% | |
| TGGGATATCGCTGCACACTC+CGG | + | chr3_2:86436930-86436949 | Msa0433820:three_prime_UTR | 55.0% | |
| CTGGACTGTGTCTTCAGAGG+AGG | - | chr3_2:86437440-86437459 | Msa0433830:CDS | 55.0% | |
| GCACTGGACTGTGTCTTCAG+AGG | - | chr3_2:86437443-86437462 | Msa0433830:CDS | 55.0% | |
| CCAACACTCGAGGAGAAGTG+CGG | - | chr3_2:86437494-86437513 | Msa0433830:CDS | 55.0% | |
| GCACGTATGGAGAAAGGGCT+TGG | - | chr3_2:86437530-86437549 | Msa0433830:CDS | 55.0% | |
| !! | GCGAGGAGCTGCTACTTTGA+AGG | - | chr3_2:86437552-86437571 | Msa0433830:CDS | 55.0% |
| !! | GAAGGCTTTGAGGCTGAGGG+GGG | - | chr3_2:86434503-86434522 | None:intergenic | 60.0% |
| CAGGTAAGGGTCCAGGTTCG+CGG | - | chr3_2:86436338-86436357 | None:intergenic | 60.0% | |
| AGCTTGGCCCGGAAGGGAAA+AGG | - | chr3_2:86436911-86436930 | Msa0433830:CDS | 60.0% | |
| ! | TTTTCCCTTCCGGGCCAAGC+TGG | + | chr3_2:86436910-86436929 | Msa0433820:three_prime_UTR | 60.0% |
| TTTCCCTTCCGGGCCAAGCT+GGG | + | chr3_2:86436911-86436930 | Msa0433820:three_prime_UTR | 60.0% | |
| TATCCCAGCTTGGCCCGGAA+GGG | - | chr3_2:86436917-86436936 | Msa0433830:CDS | 60.0% | |
| ATATCCCAGCTTGGCCCGGA+AGG | - | chr3_2:86436918-86436937 | Msa0433830:CDS | 60.0% | |
| AGCGATATCCCAGCTTGGCC+CGG | - | chr3_2:86436922-86436941 | Msa0433830:CDS | 60.0% | |
| CCGCACTTCTCCTCGAGTGT+TGG | + | chr3_2:86437491-86437510 | Msa0433820:three_prime_UTR | 60.0% | |
| CGCGAACCTGGACCCTTACC+TGG | + | chr3_2:86436336-86436355 | Msa0433820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 86434207 | 86437697 | 86434207 | ID=Msa0433820;Name=Msa0433820 |
| chr3_2 | mRNA | 86434207 | 86437697 | 86434207 | ID=Msa0433820-mRNA-1;Parent=Msa0433820;Name=Msa0433820-mRNA-1;_AED=0.15;_eAED=0.15;_QI=144|1|1|1|0.88|0.8|10|936|350 |
| chr3_2 | exon | 86434207 | 86434480 | 86434207 | ID=Msa0433820-mRNA-1:exon:24960;Parent=Msa0433820-mRNA-1 |
| chr3_2 | exon | 86434595 | 86434772 | 86434595 | ID=Msa0433820-mRNA-1:exon:24961;Parent=Msa0433820-mRNA-1 |
| chr3_2 | exon | 86435013 | 86435137 | 86435013 | ID=Msa0433820-mRNA-1:exon:24962;Parent=Msa0433820-mRNA-1 |
| chr3_2 | exon | 86435262 | 86435326 | 86435262 | ID=Msa0433820-mRNA-1:exon:24963;Parent=Msa0433820-mRNA-1 |
| chr3_2 | exon | 86435535 | 86435750 | 86435535 | ID=Msa0433820-mRNA-1:exon:24964;Parent=Msa0433820-mRNA-1 |
| chr3_2 | exon | 86435858 | 86435905 | 86435858 | ID=Msa0433820-mRNA-1:exon:24965;Parent=Msa0433820-mRNA-1 |
| chr3_2 | exon | 86436043 | 86436150 | 86436043 | ID=Msa0433820-mRNA-1:exon:24966;Parent=Msa0433820-mRNA-1 |
| chr3_2 | exon | 86436267 | 86436407 | 86436267 | ID=Msa0433820-mRNA-1:exon:24967;Parent=Msa0433820-mRNA-1 |
| chr3_2 | exon | 86436535 | 86437017 | 86436535 | ID=Msa0433820-mRNA-1:exon:24968;Parent=Msa0433820-mRNA-1 |
| chr3_2 | exon | 86437203 | 86437697 | 86437203 | ID=Msa0433820-mRNA-1:exon:24969;Parent=Msa0433820-mRNA-1 |
| chr3_2 | five_prime_UTR | 86434207 | 86434350 | 86434207 | ID=Msa0433820-mRNA-1:five_prime_utr;Parent=Msa0433820-mRNA-1 |
| chr3_2 | CDS | 86434351 | 86434480 | 86434351 | ID=Msa0433820-mRNA-1:cds;Parent=Msa0433820-mRNA-1 |
| chr3_2 | CDS | 86434595 | 86434772 | 86434595 | ID=Msa0433820-mRNA-1:cds;Parent=Msa0433820-mRNA-1 |
| chr3_2 | CDS | 86435013 | 86435137 | 86435013 | ID=Msa0433820-mRNA-1:cds;Parent=Msa0433820-mRNA-1 |
| chr3_2 | CDS | 86435262 | 86435326 | 86435262 | ID=Msa0433820-mRNA-1:cds;Parent=Msa0433820-mRNA-1 |
| chr3_2 | CDS | 86435535 | 86435750 | 86435535 | ID=Msa0433820-mRNA-1:cds;Parent=Msa0433820-mRNA-1 |
| chr3_2 | CDS | 86435858 | 86435905 | 86435858 | ID=Msa0433820-mRNA-1:cds;Parent=Msa0433820-mRNA-1 |
| chr3_2 | CDS | 86436043 | 86436150 | 86436043 | ID=Msa0433820-mRNA-1:cds;Parent=Msa0433820-mRNA-1 |
| chr3_2 | CDS | 86436267 | 86436407 | 86436267 | ID=Msa0433820-mRNA-1:cds;Parent=Msa0433820-mRNA-1 |
| chr3_2 | CDS | 86436535 | 86436576 | 86436535 | ID=Msa0433820-mRNA-1:cds;Parent=Msa0433820-mRNA-1 |
| chr3_2 | three_prime_UTR | 86436577 | 86437017 | 86436577 | ID=Msa0433820-mRNA-1:three_prime_utr;Parent=Msa0433820-mRNA-1 |
| chr3_2 | three_prime_UTR | 86437203 | 86437697 | 86437203 | ID=Msa0433820-mRNA-1:three_prime_utr;Parent=Msa0433820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
