Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435110 | XP_013462164.1 | 97.098 | 448 | 8 | 3 | 1 | 448 | 1 | 443 | 0.0 | 890 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435110 | sp|Q1PFD1|BLH11_ARATH | 60.755 | 265 | 95 | 6 | 173 | 431 | 19 | 280 | 1.45e-105 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435110 | A0A072V2D2 | 97.098 | 448 | 8 | 3 | 1 | 448 | 1 | 443 | 0.0 | 890 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0435110 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0435110 | Msa0479210 | 0.809795 | 1.585686e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435110 | MtrunA17_Chr3g0141931 | 97.098 | 448 | 8 | 3 | 1 | 448 | 1 | 443 | 0.0 | 890 |
| Msa0435110 | MtrunA17_Chr1g0155681 | 51.264 | 277 | 104 | 8 | 173 | 432 | 173 | 435 | 2.45e-78 | 255 |
| Msa0435110 | MtrunA17_Chr3g0141941 | 45.645 | 287 | 122 | 6 | 163 | 432 | 155 | 424 | 2.00e-71 | 234 |
| Msa0435110 | MtrunA17_Chr4g0025521 | 46.290 | 283 | 134 | 6 | 170 | 442 | 217 | 491 | 2.83e-67 | 228 |
| Msa0435110 | MtrunA17_Chr7g0267481 | 46.503 | 286 | 120 | 6 | 168 | 432 | 169 | 442 | 1.41e-65 | 222 |
| Msa0435110 | MtrunA17_Chr5g0403251 | 43.000 | 300 | 150 | 9 | 136 | 427 | 312 | 598 | 1.81e-65 | 223 |
| Msa0435110 | MtrunA17_Chr1g0177751 | 45.817 | 251 | 128 | 4 | 169 | 414 | 160 | 407 | 4.24e-65 | 221 |
| Msa0435110 | MtrunA17_Chr8g0373801 | 44.322 | 273 | 135 | 6 | 170 | 431 | 388 | 654 | 1.50e-63 | 219 |
| Msa0435110 | MtrunA17_Chr4g0028701 | 37.391 | 345 | 164 | 7 | 140 | 432 | 205 | 549 | 1.44e-60 | 209 |
| Msa0435110 | MtrunA17_Chr4g0008591 | 41.328 | 271 | 128 | 5 | 167 | 431 | 193 | 438 | 1.63e-60 | 207 |
| Msa0435110 | MtrunA17_Chr7g0240371 | 41.948 | 267 | 136 | 4 | 167 | 431 | 134 | 383 | 1.16e-58 | 201 |
| Msa0435110 | MtrunA17_Chr8g0387321 | 54.645 | 183 | 73 | 5 | 239 | 416 | 255 | 432 | 8.19e-58 | 200 |
| Msa0435110 | MtrunA17_Chr2g0327021 | 40.461 | 304 | 138 | 9 | 159 | 432 | 230 | 520 | 1.00e-56 | 197 |
| Msa0435110 | MtrunA17_Chr1g0151681 | 36.466 | 266 | 147 | 7 | 167 | 422 | 240 | 493 | 2.32e-40 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435110 | AT1G75430.1 | 60.755 | 265 | 95 | 6 | 173 | 431 | 19 | 280 | 1.48e-106 | 318 |
| Msa0435110 | AT1G75410.1 | 49.632 | 272 | 125 | 4 | 162 | 429 | 159 | 422 | 2.22e-78 | 253 |
| Msa0435110 | AT1G75410.2 | 49.632 | 272 | 125 | 4 | 162 | 429 | 159 | 422 | 2.22e-78 | 253 |
| Msa0435110 | AT2G16400.1 | 47.405 | 289 | 128 | 7 | 148 | 433 | 98 | 365 | 2.00e-77 | 249 |
| Msa0435110 | AT1G19700.1 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 4.79e-77 | 250 |
| Msa0435110 | AT1G19700.3 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 4.79e-77 | 250 |
| Msa0435110 | AT1G19700.5 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 4.79e-77 | 250 |
| Msa0435110 | AT1G19700.4 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 4.79e-77 | 250 |
| Msa0435110 | AT1G19700.2 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 4.79e-77 | 250 |
| Msa0435110 | AT4G34610.2 | 48.540 | 274 | 118 | 7 | 170 | 437 | 140 | 396 | 5.69e-71 | 234 |
| Msa0435110 | AT4G34610.4 | 48.540 | 274 | 118 | 7 | 170 | 437 | 140 | 396 | 5.69e-71 | 234 |
| Msa0435110 | AT4G34610.3 | 48.540 | 274 | 118 | 7 | 170 | 437 | 140 | 396 | 5.69e-71 | 234 |
| Msa0435110 | AT4G34610.1 | 48.540 | 274 | 118 | 7 | 170 | 437 | 140 | 396 | 5.69e-71 | 234 |
| Msa0435110 | AT1G75430.2 | 53.991 | 213 | 89 | 5 | 173 | 379 | 19 | 228 | 4.65e-68 | 219 |
| Msa0435110 | AT4G36870.2 | 46.269 | 268 | 117 | 10 | 170 | 422 | 312 | 567 | 7.86e-62 | 214 |
| Msa0435110 | AT4G36870.1 | 46.269 | 268 | 117 | 10 | 170 | 422 | 312 | 567 | 7.86e-62 | 214 |
| Msa0435110 | AT2G35940.3 | 41.935 | 279 | 128 | 6 | 163 | 414 | 175 | 446 | 1.64e-58 | 204 |
| Msa0435110 | AT2G35940.1 | 41.935 | 279 | 128 | 6 | 163 | 414 | 175 | 446 | 1.64e-58 | 204 |
| Msa0435110 | AT2G35940.2 | 41.935 | 279 | 128 | 6 | 163 | 414 | 175 | 446 | 1.64e-58 | 204 |
| Msa0435110 | AT2G27220.1 | 43.373 | 249 | 108 | 4 | 176 | 423 | 82 | 298 | 7.39e-58 | 196 |
| Msa0435110 | AT2G27220.3 | 43.373 | 249 | 108 | 4 | 176 | 423 | 82 | 298 | 7.39e-58 | 196 |
| Msa0435110 | AT2G23760.2 | 44.610 | 269 | 119 | 8 | 170 | 421 | 237 | 492 | 8.23e-58 | 201 |
| Msa0435110 | AT2G23760.1 | 44.610 | 269 | 119 | 8 | 170 | 421 | 237 | 492 | 8.23e-58 | 201 |
| Msa0435110 | AT2G23760.3 | 44.610 | 269 | 119 | 8 | 170 | 421 | 237 | 492 | 8.23e-58 | 201 |
| Msa0435110 | AT5G02030.1 | 37.705 | 305 | 173 | 3 | 125 | 423 | 125 | 418 | 8.19e-57 | 197 |
| Msa0435110 | AT1G75410.3 | 44.856 | 243 | 122 | 4 | 162 | 400 | 159 | 393 | 4.03e-56 | 191 |
| Msa0435110 | AT2G27220.2 | 42.586 | 263 | 108 | 8 | 176 | 423 | 82 | 316 | 1.38e-55 | 191 |
| Msa0435110 | AT2G27990.1 | 41.154 | 260 | 126 | 4 | 167 | 423 | 259 | 494 | 2.81e-54 | 191 |
| Msa0435110 | AT5G41410.1 | 40.702 | 285 | 141 | 5 | 171 | 433 | 194 | 472 | 7.80e-52 | 184 |
| Msa0435110 | AT2G23760.4 | 37.383 | 321 | 119 | 9 | 170 | 421 | 237 | 544 | 3.64e-48 | 175 |
| Msa0435110 | AT4G36870.4 | 42.915 | 247 | 114 | 10 | 170 | 401 | 312 | 546 | 9.94e-46 | 167 |
| Msa0435110 | AT4G36870.3 | 42.449 | 245 | 114 | 10 | 170 | 399 | 312 | 544 | 1.78e-44 | 164 |
| Msa0435110 | AT4G32980.1 | 36.071 | 280 | 149 | 6 | 152 | 422 | 183 | 441 | 2.68e-40 | 150 |
| Msa0435110 | AT4G32980.2 | 36.071 | 280 | 149 | 6 | 152 | 422 | 183 | 441 | 2.68e-40 | 150 |
| Msa0435110 | AT2G27990.2 | 34.722 | 216 | 114 | 4 | 167 | 379 | 259 | 450 | 2.28e-28 | 117 |
Find 79 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATTCATGGACATTTAT+TGG | 0.202908 | 3_2:-88131334 | Msa0435110:CDS |
| GATCATAAGACCTTGATTTA+AGG | 0.203423 | 3_2:+88131728 | None:intergenic |
| CGTTCTACTTCTACTTCTTA+TGG | 0.209074 | 3_2:-88131543 | Msa0435110:CDS |
| TGAGAAAAGAAAACTGTTTC+AGG | 0.210768 | 3_2:-88130479 | Msa0435110:CDS |
| AGCATTTATTTGGGACATTA+TGG | 0.234641 | 3_2:+88130501 | None:intergenic |
| AGAATTGCTACAGATGTTTC+AGG | 0.303192 | 3_2:+88130319 | None:intergenic |
| CAAGGTCTATCCCTTTCTTT+AGG | 0.320317 | 3_2:-88131786 | Msa0435110:CDS |
| ATACTACTTCTTCCATTTGA+TGG | 0.326054 | 3_2:+88130620 | None:intergenic |
| TTGTACATTTCTTCTATCAT+TGG | 0.327367 | 3_2:+88129731 | None:intergenic |
| TGCAAAGCTCATTTCATTGT+TGG | 0.330686 | 3_2:-88131283 | Msa0435110:CDS |
| CACCACCTAGTAGTAGTTCT+TGG | 0.332157 | 3_2:+88131967 | None:intergenic |
| TTCAAAACCAACGACAAGTT+TGG | 0.336930 | 3_2:-88130360 | Msa0435110:CDS |
| GAAGTGACTGTACTGGTTTA+AGG | 0.338310 | 3_2:+88131481 | None:intergenic |
| TTACACTGCTTTGGCACTTC+AGG | 0.345280 | 3_2:-88130557 | Msa0435110:CDS |
| AGATGTCACTGTGGAGGATT+AGG | 0.348390 | 3_2:-88129645 | Msa0435110:exon |
| AGCTGGCGGGTTGGAGTCTT+CGG | 0.349210 | 3_2:+88129688 | None:intergenic |
| ATTAACTTCTCAGAGTCATT+AGG | 0.369658 | 3_2:+88130163 | None:intergenic |
| GAAATGTACAAAGAAGAGTT+TGG | 0.376842 | 3_2:-88129719 | Msa0435110:CDS |
| GTTTCAGGTAACCCTCTAAT+AGG | 0.383713 | 3_2:+88130334 | None:intergenic |
| CTTGAAGATCTTGTTGATGT+TGG | 0.386052 | 3_2:-88131459 | Msa0435110:CDS |
| TTAATCCTGGCTTCCCAAAC+AGG | 0.402326 | 3_2:-88130145 | Msa0435110:CDS |
| GAGTCACACAAGACATTTGA+TGG | 0.404453 | 3_2:-88131850 | Msa0435110:CDS |
| TGTTGGTTCAGGTGTCAAAT+TGG | 0.407480 | 3_2:-88129784 | Msa0435110:intron |
| TTTGAAATGATAGCAGGTTT+GGG | 0.408450 | 3_2:-88130592 | Msa0435110:CDS |
| TGCAAAGTGTTACACTGCTT+TGG | 0.409703 | 3_2:-88130566 | Msa0435110:CDS |
| AAAGCAGAGTTGAGGATTCA+TGG | 0.417721 | 3_2:-88131345 | Msa0435110:CDS |
| TCTTATGGAAGTGAGAGTTT+TGG | 0.428359 | 3_2:-88131528 | Msa0435110:CDS |
| TTGTTTCATGGGAGTAGAAC+AGG | 0.428923 | 3_2:-88131393 | Msa0435110:CDS |
| CTGTAGCAATTCTTCGTGCT+TGG | 0.430609 | 3_2:-88130309 | Msa0435110:CDS |
| TTCAATGGTGGAAATGGAGG+TGG | 0.430738 | 3_2:-88131618 | Msa0435110:CDS |
| TATGCTGAGAAGTTGTTTCA+TGG | 0.434153 | 3_2:-88131405 | Msa0435110:CDS |
| GAATCCTCAACTCTGCTTTG+AGG | 0.436275 | 3_2:+88131349 | None:intergenic |
| TGACCAGGCATGAAGTAACT+TGG | 0.451078 | 3_2:+88131702 | None:intergenic |
| CAAGTTTGGAGACCTATTAG+AGG | 0.455849 | 3_2:-88130346 | Msa0435110:CDS |
| GGGATAGACCTTGTTGTGTC+TGG | 0.465614 | 3_2:+88131796 | None:intergenic |
| TTAAACCTGTTTGGGAAGCC+AGG | 0.480873 | 3_2:+88130140 | None:intergenic |
| CTTGACATAAAATTGTTAGC+TGG | 0.489551 | 3_2:+88129671 | None:intergenic |
| TGACTCTGAGAAGTTAATCC+TGG | 0.499019 | 3_2:-88130158 | Msa0435110:CDS |
| TTTGAATGACACCAAGTTGT+TGG | 0.503416 | 3_2:+88130377 | None:intergenic |
| GCTCATTTCATTGTTGGATG+AGG | 0.504055 | 3_2:-88131277 | Msa0435110:intron |
| CTTGTTAGATTCTCCACCAC+AGG | 0.504734 | 3_2:+88131651 | None:intergenic |
| TGAGAAGTACTACCATCAAA+TGG | 0.506912 | 3_2:-88130632 | Msa0435110:CDS |
| TCCACCACAGGTTGATTACA+AGG | 0.508130 | 3_2:+88131663 | None:intergenic |
| GAAGATCTTGTTGATGTTGG+TGG | 0.515827 | 3_2:-88131456 | Msa0435110:CDS |
| AACCCAAGTTACTTCATGCC+TGG | 0.516099 | 3_2:-88131705 | Msa0435110:CDS |
| TTAATGCAAGGGTACGGCTA+TGG | 0.523142 | 3_2:-88129757 | Msa0435110:CDS |
| CAAATTGGTTCATTAATGCA+AGG | 0.528439 | 3_2:-88129769 | Msa0435110:CDS |
| CATGTGAGAGCCTAAAGAAA+GGG | 0.530908 | 3_2:+88131776 | None:intergenic |
| ATGCTGAGAAGTTGTTTCAT+GGG | 0.532525 | 3_2:-88131404 | Msa0435110:CDS |
| TGGCACTTCAGGCAATGTCT+AGG | 0.533896 | 3_2:-88130546 | Msa0435110:CDS |
| TCTTCAAGAAGTGACTGTAC+TGG | 0.534996 | 3_2:+88131474 | None:intergenic |
| ACATAAAATTGTTAGCTGGC+GGG | 0.535342 | 3_2:+88129675 | None:intergenic |
| AGAAACCGTTCCTTAAATCA+AGG | 0.535526 | 3_2:-88131738 | Msa0435110:CDS |
| TAGGTCTCCAAACTTGTCGT+TGG | 0.537318 | 3_2:+88130353 | None:intergenic |
| GATGTACCTAAAATTAATAG+TGG | 0.538946 | 3_2:-88130457 | Msa0435110:CDS |
| GCATGTGAGAGCCTAAAGAA+AGG | 0.546878 | 3_2:+88131775 | None:intergenic |
| TAAGACCTTGATTTAAGGAA+CGG | 0.549373 | 3_2:+88131733 | None:intergenic |
| AGACATTTGATGGATCTACT+TGG | 0.551807 | 3_2:-88131840 | Msa0435110:CDS |
| AAAATTGTTAGCTGGCGGGT+TGG | 0.557706 | 3_2:+88129679 | None:intergenic |
| AGAATGTCTCTCCAACAACT+TGG | 0.557966 | 3_2:-88130388 | Msa0435110:CDS |
| GACCAGGCATGAAGTAACTT+GGG | 0.566873 | 3_2:+88131703 | None:intergenic |
| GAGAACCAAGAACTACTACT+AGG | 0.567546 | 3_2:-88131972 | Msa0435110:CDS |
| GGTTCATTAATGCAAGGGTA+CGG | 0.572871 | 3_2:-88129763 | Msa0435110:CDS |
| AAATTGGTTCATTAATGCAA+GGG | 0.576729 | 3_2:-88129768 | Msa0435110:CDS |
| GACATAAAATTGTTAGCTGG+CGG | 0.577181 | 3_2:+88129674 | None:intergenic |
| AAGTTTGGAGACCTATTAGA+GGG | 0.581283 | 3_2:-88130345 | Msa0435110:CDS |
| TCACGTGTCTGATCTTGACC+AGG | 0.591778 | 3_2:+88131687 | None:intergenic |
| CAACTCTGCTTTGAGGTCAG+AGG | 0.594657 | 3_2:+88131356 | None:intergenic |
| CATAAGAAGTAGAAGTAGAA+CGG | 0.599560 | 3_2:+88131544 | None:intergenic |
| AATGCATATCATGAATCACT+TGG | 0.609154 | 3_2:-88131915 | Msa0435110:CDS |
| AACAATATTGGACTAGCACA+AGG | 0.612707 | 3_2:-88131882 | Msa0435110:CDS |
| GCCTTGTAATCAACCTGTGG+TGG | 0.623528 | 3_2:-88131664 | Msa0435110:CDS |
| AATAATCACCAGACACAACA+AGG | 0.630483 | 3_2:-88131804 | Msa0435110:CDS |
| AAGGGAAGATGTCACTGTGG+AGG | 0.641601 | 3_2:-88129651 | Msa0435110:CDS |
| CAAGAACTACTACTAGGTGG+TGG | 0.646214 | 3_2:-88131966 | Msa0435110:CDS |
| CTGACCTCAAAGCAGAGTTG+AGG | 0.668038 | 3_2:-88131353 | Msa0435110:CDS |
| AACCAAGAACTACTACTAGG+TGG | 0.711092 | 3_2:-88131969 | Msa0435110:CDS |
| TGAGCCTTGTAATCAACCTG+TGG | 0.732645 | 3_2:-88131667 | Msa0435110:CDS |
| GTCAAGGGAAGATGTCACTG+TGG | 0.757361 | 3_2:-88129654 | Msa0435110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAAAAATCAAATTGTTT+TGG | - | chr3_2:88130433-88130452 | Msa0435110:CDS | 15.0% |
| !!! | AAAGTAATTCATTTTTTTTC+CGG | - | chr3_2:88131701-88131720 | Msa0435110:CDS | 15.0% |
| !!! | AAAATTCTTTTTATCTTCAT+AGG | + | chr3_2:88131936-88131955 | None:intergenic | 15.0% |
| !!! | ACAAGTGATTATTTTTTCAA+TGG | - | chr3_2:88129908-88129927 | Msa0435110:intron | 20.0% |
| !! | AAAAAGAAAAACAAATTGAG+AGG | - | chr3_2:88130647-88130666 | Msa0435110:CDS | 20.0% |
| !! | TATAAGTGTTAGATATACTT+GGG | + | chr3_2:88130810-88130829 | None:intergenic | 20.0% |
| !! | ATATAAGTGTTAGATATACT+TGG | + | chr3_2:88130811-88130830 | None:intergenic | 20.0% |
| !! | CTCAAAGAAATTAATCTAAA+CGG | - | chr3_2:88130842-88130861 | Msa0435110:intron | 20.0% |
| !!! | AGAATTTTGATATAAGCTTA+CGG | + | chr3_2:88131279-88131298 | None:intergenic | 20.0% |
| !! | ATTAATGAAATGCTAATTTG+AGG | - | chr3_2:88131337-88131356 | Msa0435110:CDS | 20.0% |
| !! | TTAACATATCATTAGGAAAA+AGG | + | chr3_2:88131467-88131486 | None:intergenic | 20.0% |
| !! | AGCTAAATTAACATATCATT+AGG | + | chr3_2:88131474-88131493 | None:intergenic | 20.0% |
| !!! | TTCTTTCACTTTATCTTTTA+TGG | - | chr3_2:88131559-88131578 | Msa0435110:CDS | 20.0% |
| !!! | TCTTTCACTTTATCTTTTAT+GGG | - | chr3_2:88131560-88131579 | Msa0435110:CDS | 20.0% |
| !!! | TAAAAGTATATGAAATTCAC+CGG | + | chr3_2:88131634-88131653 | None:intergenic | 20.0% |
| !!! | GTGAATTTCATATACTTTTA+AGG | - | chr3_2:88131634-88131653 | Msa0435110:CDS | 20.0% |
| !!! | GTTCTCAAATTGATTTTGAT+GGG | + | chr3_2:88129555-88129574 | None:intergenic | 25.0% |
| !! | GGAACATTTTCTAACAATAT+TGG | - | chr3_2:88129647-88129666 | Msa0435110:CDS | 25.0% |
| !!! | AGTGATTATTTTTTCAATGG+TGG | - | chr3_2:88129911-88129930 | Msa0435110:intron | 25.0% |
| !!! | TATTTTTTCAATGGTGGAAA+TGG | - | chr3_2:88129917-88129936 | Msa0435110:intron | 25.0% |
| ! | AGCTATCTTAGAGAATTTAT+AGG | - | chr3_2:88130508-88130527 | Msa0435110:CDS | 25.0% |
| !! | AGGAAAATGTCAAATAGTTT+TGG | - | chr3_2:88130528-88130547 | Msa0435110:CDS | 25.0% |
| ! | AAGTTCATTAGAATAAGTGT+AGG | - | chr3_2:88130691-88130710 | Msa0435110:intron | 25.0% |
| !! | AAGTTGGTTAGTAATTAGTT+GGG | + | chr3_2:88130766-88130785 | None:intergenic | 25.0% |
| !! | AAAGTTGGTTAGTAATTAGT+TGG | + | chr3_2:88130767-88130786 | None:intergenic | 25.0% |
| !!! | ATTTGTTGTGCTTAATTTTC+AGG | - | chr3_2:88130873-88130892 | Msa0435110:intron | 25.0% |
| !! | TCTTTTCTCAGCATTTATTT+GGG | + | chr3_2:88131052-88131071 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAGCATTTATT+TGG | + | chr3_2:88131053-88131072 | None:intergenic | 25.0% |
| ! | GATGTACCTAAAATTAATAG+TGG | - | chr3_2:88131084-88131103 | Msa0435110:intron | 25.0% |
| !! | GACAATCCACTATTAATTTT+AGG | + | chr3_2:88131093-88131112 | None:intergenic | 25.0% |
| ! | TAGCATTTCATTAATAAGAC+AGG | + | chr3_2:88131332-88131351 | None:intergenic | 25.0% |
| ! | TATCATTAGGAAAAAGGAAA+GGG | + | chr3_2:88131461-88131480 | None:intergenic | 25.0% |
| ! | ATATCATTAGGAAAAAGGAA+AGG | + | chr3_2:88131462-88131481 | None:intergenic | 25.0% |
| !! | AAATTGGTTCATTAATGCAA+GGG | - | chr3_2:88131773-88131792 | Msa0435110:CDS | 25.0% |
| ! | TTGTACATTTCTTCTATCAT+TGG | + | chr3_2:88131813-88131832 | None:intergenic | 25.0% |
| !! | AGCTAACAATTTTATGTCAA+GGG | - | chr3_2:88131872-88131891 | Msa0435110:CDS | 25.0% |
| !! | GAAGATAAAAAGAATTTTGC+TGG | - | chr3_2:88131938-88131957 | Msa0435110:CDS | 25.0% |
| !! | AGAATTTTGCTGGAAAATAT+TGG | - | chr3_2:88131948-88131967 | Msa0435110:CDS | 25.0% |
| !! | AATATTTTCTCTCCTGATTT+TGG | + | chr3_2:88131983-88132002 | None:intergenic | 25.0% |
| !! | AAATTGATTTTGATGGGTCA+TGG | + | chr3_2:88129549-88129568 | None:intergenic | 30.0% |
| !! | GGTTCTCAAATTGATTTTGA+TGG | + | chr3_2:88129556-88129575 | None:intergenic | 30.0% |
| AATGCATATCATGAATCACT+TGG | - | chr3_2:88129626-88129645 | Msa0435110:three_prime_UTR | 30.0% | |
| TAAGACCTTGATTTAAGGAA+CGG | + | chr3_2:88129811-88129830 | None:intergenic | 30.0% | |
| GATCATAAGACCTTGATTTA+AGG | + | chr3_2:88129816-88129835 | None:intergenic | 30.0% | |
| CATAAGAAGTAGAAGTAGAA+CGG | + | chr3_2:88130000-88130019 | None:intergenic | 30.0% | |
| !!! | AGAGTTTTGGTTCTGTTATT+GGG | - | chr3_2:88130026-88130045 | Msa0435110:intron | 30.0% |
| AATAATAAGCACTTGTGAGA+CGG | + | chr3_2:88130605-88130624 | None:intergenic | 30.0% | |
| GTGCTTATTATTGAGAAACA+TGG | - | chr3_2:88130613-88130632 | Msa0435110:CDS | 30.0% | |
| !! | GTTAAAGGTACTTACAAAGT+TGG | + | chr3_2:88130782-88130801 | None:intergenic | 30.0% |
| !! | TATACTTGGGAGTTTGTTAA+AGG | + | chr3_2:88130797-88130816 | None:intergenic | 30.0% |
| ATACTACTTCTTCCATTTGA+TGG | + | chr3_2:88130924-88130943 | None:intergenic | 30.0% | |
| !!! | TCATCTTTTGAAATGATAGC+AGG | - | chr3_2:88130943-88130962 | Msa0435110:intron | 30.0% |
| !!! | TTTTGAAATGATAGCAGGTT+TGG | - | chr3_2:88130948-88130967 | Msa0435110:intron | 30.0% |
| ! | TTTGAAATGATAGCAGGTTT+GGG | - | chr3_2:88130949-88130968 | Msa0435110:intron | 30.0% |
| ! | AGCATTTATTTGGGACATTA+TGG | + | chr3_2:88131043-88131062 | None:intergenic | 30.0% |
| TGAGAAAAGAAAACTGTTTC+AGG | - | chr3_2:88131062-88131081 | Msa0435110:intron | 30.0% | |
| ATTAACTTCTCAGAGTCATT+AGG | + | chr3_2:88131381-88131400 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGTTAAACCTGTTT+GGG | + | chr3_2:88131412-88131431 | None:intergenic | 30.0% |
| !! | ATAAGGGATTACTTGGTTTT+TGG | + | chr3_2:88131427-88131446 | None:intergenic | 30.0% |
| ! | TTTTTGGATAAGGGATTACT+TGG | + | chr3_2:88131434-88131453 | None:intergenic | 30.0% |
| ATCATTAGGAAAAAGGAAAG+GGG | + | chr3_2:88131460-88131479 | None:intergenic | 30.0% | |
| ! | TCACTTTATCTTTTATGGGT+AGG | - | chr3_2:88131564-88131583 | Msa0435110:CDS | 30.0% |
| ! | TTTTCCGGAGTTATTTATGA+TGG | - | chr3_2:88131716-88131735 | Msa0435110:CDS | 30.0% |
| ATCACCATCATAAATAACTC+CGG | + | chr3_2:88131723-88131742 | None:intergenic | 30.0% | |
| GATGTTAATGTATTGAGTGT+TGG | - | chr3_2:88131740-88131759 | Msa0435110:CDS | 30.0% | |
| ! | CAAATTGGTTCATTAATGCA+AGG | - | chr3_2:88131772-88131791 | Msa0435110:CDS | 30.0% |
| GAAATGTACAAAGAAGAGTT+TGG | - | chr3_2:88131822-88131841 | Msa0435110:CDS | 30.0% | |
| CTTGACATAAAATTGTTAGC+TGG | + | chr3_2:88131873-88131892 | None:intergenic | 30.0% | |
| ! | CAGCTAACAATTTTATGTCA+AGG | - | chr3_2:88131871-88131890 | Msa0435110:CDS | 30.0% |
| !! | AACAATATTGGACTAGCACA+AGG | - | chr3_2:88129659-88129678 | Msa0435110:CDS | 35.0% |
| ! | AGACATTTGATGGATCTACT+TGG | - | chr3_2:88129701-88129720 | Msa0435110:CDS | 35.0% |
| AATAATCACCAGACACAACA+AGG | - | chr3_2:88129737-88129756 | Msa0435110:CDS | 35.0% | |
| AGAAACCGTTCCTTAAATCA+AGG | - | chr3_2:88129803-88129822 | Msa0435110:intron | 35.0% | |
| !! | TTTTTCAATGGTGGAAATGG+AGG | - | chr3_2:88129920-88129939 | Msa0435110:intron | 35.0% |
| CGTTCTACTTCTACTTCTTA+TGG | - | chr3_2:88129998-88130017 | Msa0435110:intron | 35.0% | |
| ! | TCTTATGGAAGTGAGAGTTT+TGG | - | chr3_2:88130013-88130032 | Msa0435110:intron | 35.0% |
| !!! | GAGAGTTTTGGTTCTGTTAT+TGG | - | chr3_2:88130025-88130044 | Msa0435110:intron | 35.0% |
| CTTGAAGATCTTGTTGATGT+TGG | - | chr3_2:88130082-88130101 | Msa0435110:intron | 35.0% | |
| ! | TATGCTGAGAAGTTGTTTCA+TGG | - | chr3_2:88130136-88130155 | Msa0435110:CDS | 35.0% |
| ! | ATGCTGAGAAGTTGTTTCAT+GGG | - | chr3_2:88130137-88130156 | Msa0435110:CDS | 35.0% |
| GAGGATTCATGGACATTTAT+TGG | - | chr3_2:88130207-88130226 | Msa0435110:intron | 35.0% | |
| TGCAAAGCTCATTTCATTGT+TGG | - | chr3_2:88130258-88130277 | Msa0435110:intron | 35.0% | |
| ATTTCATTGTTGGATGAGGT+TGG | - | chr3_2:88130268-88130287 | Msa0435110:intron | 35.0% | |
| !!! | TGTGCTTAATTTTCAGGTTG+AGG | - | chr3_2:88130879-88130898 | Msa0435110:intron | 35.0% |
| !!! | GTGCTTAATTTTCAGGTTGA+GGG | - | chr3_2:88130880-88130899 | Msa0435110:intron | 35.0% |
| !! | TGAGAAGTACTACCATCAAA+TGG | - | chr3_2:88130909-88130928 | Msa0435110:intron | 35.0% |
| TTTGAATGACACCAAGTTGT+TGG | + | chr3_2:88131167-88131186 | None:intergenic | 35.0% | |
| TTCAAAACCAACGACAAGTT+TGG | - | chr3_2:88131181-88131200 | Msa0435110:intron | 35.0% | |
| AAGTTTGGAGACCTATTAGA+GGG | - | chr3_2:88131196-88131215 | Msa0435110:intron | 35.0% | |
| AGAATTGCTACAGATGTTTC+AGG | + | chr3_2:88131225-88131244 | None:intergenic | 35.0% | |
| !!! | GGTTTTTGGTTAAACCTGTT+TGG | + | chr3_2:88131413-88131432 | None:intergenic | 35.0% |
| !! | AAGGGGTAGTTTTTGGATAA+GGG | + | chr3_2:88131443-88131462 | None:intergenic | 35.0% |
| !! | AAAGGGGTAGTTTTTGGATA+AGG | + | chr3_2:88131444-88131463 | None:intergenic | 35.0% |
| ! | AAAAGGAAAGGGGTAGTTTT+TGG | + | chr3_2:88131450-88131469 | None:intergenic | 35.0% |
| TTATGGGTAGGAATCAAGTT+AGG | - | chr3_2:88131576-88131595 | Msa0435110:CDS | 35.0% | |
| CAACAGTCACATACATTAAC+CGG | - | chr3_2:88131612-88131631 | Msa0435110:CDS | 35.0% | |
| ! | ACACTGCAAACATTAACTTG+AGG | - | chr3_2:88131667-88131686 | Msa0435110:CDS | 35.0% |
| ! | CACTGCAAACATTAACTTGA+GGG | - | chr3_2:88131668-88131687 | Msa0435110:CDS | 35.0% |
| !! | AATGTATTGAGTGTTGGTTC+AGG | - | chr3_2:88131746-88131765 | Msa0435110:CDS | 35.0% |
| ACATAAAATTGTTAGCTGGC+GGG | + | chr3_2:88131869-88131888 | None:intergenic | 35.0% | |
| GACATAAAATTGTTAGCTGG+CGG | + | chr3_2:88131870-88131889 | None:intergenic | 35.0% | |
| !! | TCTCCTGATTTTGGAGAAAA+GGG | + | chr3_2:88131974-88131993 | None:intergenic | 35.0% |
| GAGAACCAAGAACTACTACT+AGG | - | chr3_2:88129569-88129588 | Msa0435110:three_prime_UTR | 40.0% | |
| AACCAAGAACTACTACTAGG+TGG | - | chr3_2:88129572-88129591 | Msa0435110:three_prime_UTR | 40.0% | |
| GAGTCACACAAGACATTTGA+TGG | - | chr3_2:88129691-88129710 | Msa0435110:CDS | 40.0% | |
| CAAGGTCTATCCCTTTCTTT+AGG | - | chr3_2:88129755-88129774 | Msa0435110:CDS | 40.0% | |
| CATGTGAGAGCCTAAAGAAA+GGG | + | chr3_2:88129768-88129787 | None:intergenic | 40.0% | |
| !! | GAAGTGACTGTACTGGTTTA+AGG | + | chr3_2:88130063-88130082 | None:intergenic | 40.0% |
| TCTTCAAGAAGTGACTGTAC+TGG | + | chr3_2:88130070-88130089 | None:intergenic | 40.0% | |
| GAAGATCTTGTTGATGTTGG+TGG | - | chr3_2:88130085-88130104 | Msa0435110:intron | 40.0% | |
| TTGTTTCATGGGAGTAGAAC+AGG | - | chr3_2:88130148-88130167 | Msa0435110:CDS | 40.0% | |
| AAAGCAGAGTTGAGGATTCA+TGG | - | chr3_2:88130196-88130215 | Msa0435110:intron | 40.0% | |
| GCTCATTTCATTGTTGGATG+AGG | - | chr3_2:88130264-88130283 | Msa0435110:intron | 40.0% | |
| ! | TGCAAAGTGTTACACTGCTT+TGG | - | chr3_2:88130975-88130994 | Msa0435110:intron | 40.0% |
| AGAATGTCTCTCCAACAACT+TGG | - | chr3_2:88131153-88131172 | Msa0435110:intron | 40.0% | |
| CAAGTTTGGAGACCTATTAG+AGG | - | chr3_2:88131195-88131214 | Msa0435110:intron | 40.0% | |
| ! | GTTTCAGGTAACCCTCTAAT+AGG | + | chr3_2:88131210-88131229 | None:intergenic | 40.0% |
| ! | TGACTCTGAGAAGTTAATCC+TGG | - | chr3_2:88131383-88131402 | Msa0435110:CDS | 40.0% |
| !! | TGTTGGTTCAGGTGTCAAAT+TGG | - | chr3_2:88131757-88131776 | Msa0435110:CDS | 40.0% |
| GGTTCATTAATGCAAGGGTA+CGG | - | chr3_2:88131778-88131797 | Msa0435110:CDS | 40.0% | |
| !! | CTCTCCTGATTTTGGAGAAA+AGG | + | chr3_2:88131975-88131994 | None:intergenic | 40.0% |
| CACCACCTAGTAGTAGTTCT+TGG | + | chr3_2:88129577-88129596 | None:intergenic | 45.0% | |
| CAAGAACTACTACTAGGTGG+TGG | - | chr3_2:88129575-88129594 | Msa0435110:three_prime_UTR | 45.0% | |
| GCATGTGAGAGCCTAAAGAA+AGG | + | chr3_2:88129769-88129788 | None:intergenic | 45.0% | |
| AACCCAAGTTACTTCATGCC+TGG | - | chr3_2:88129836-88129855 | Msa0435110:intron | 45.0% | |
| GACCAGGCATGAAGTAACTT+GGG | + | chr3_2:88129841-88129860 | None:intergenic | 45.0% | |
| TGACCAGGCATGAAGTAACT+TGG | + | chr3_2:88129842-88129861 | None:intergenic | 45.0% | |
| ! | TGAGCCTTGTAATCAACCTG+TGG | - | chr3_2:88129874-88129893 | Msa0435110:intron | 45.0% |
| !! | TCCACCACAGGTTGATTACA+AGG | + | chr3_2:88129881-88129900 | None:intergenic | 45.0% |
| CTTGTTAGATTCTCCACCAC+AGG | + | chr3_2:88129893-88129912 | None:intergenic | 45.0% | |
| ! | TTCAATGGTGGAAATGGAGG+TGG | - | chr3_2:88129923-88129942 | Msa0435110:intron | 45.0% |
| GAATCCTCAACTCTGCTTTG+AGG | + | chr3_2:88130195-88130214 | None:intergenic | 45.0% | |
| ! | AAGCACTTGTGAGACGGATT+AGG | + | chr3_2:88130599-88130618 | None:intergenic | 45.0% |
| TTACACTGCTTTGGCACTTC+AGG | - | chr3_2:88130984-88131003 | Msa0435110:intron | 45.0% | |
| TAGGTCTCCAAACTTGTCGT+TGG | + | chr3_2:88131191-88131210 | None:intergenic | 45.0% | |
| CTGTAGCAATTCTTCGTGCT+TGG | - | chr3_2:88131232-88131251 | Msa0435110:intron | 45.0% | |
| TTAATCCTGGCTTCCCAAAC+AGG | - | chr3_2:88131396-88131415 | Msa0435110:CDS | 45.0% | |
| TTAAACCTGTTTGGGAAGCC+AGG | + | chr3_2:88131404-88131423 | None:intergenic | 45.0% | |
| ! | TTAATGCAAGGGTACGGCTA+TGG | - | chr3_2:88131784-88131803 | Msa0435110:CDS | 45.0% |
| ! | AAAATTGTTAGCTGGCGGGT+TGG | + | chr3_2:88131865-88131884 | None:intergenic | 45.0% |
| AGATGTCACTGTGGAGGATT+AGG | - | chr3_2:88131896-88131915 | Msa0435110:CDS | 45.0% | |
| ! | TGGCCCTTTTCTCCAAAATC+AGG | - | chr3_2:88131968-88131987 | Msa0435110:CDS | 45.0% |
| ! | GGGATAGACCTTGTTGTGTC+TGG | + | chr3_2:88129748-88129767 | None:intergenic | 50.0% |
| TCACGTGTCTGATCTTGACC+AGG | + | chr3_2:88129857-88129876 | None:intergenic | 50.0% | |
| GCCTTGTAATCAACCTGTGG+TGG | - | chr3_2:88129877-88129896 | Msa0435110:intron | 50.0% | |
| ! | GGAGGTGGAACTTTTGCTTC+AGG | - | chr3_2:88129938-88129957 | Msa0435110:intron | 50.0% |
| !! | CAACTCTGCTTTGAGGTCAG+AGG | + | chr3_2:88130188-88130207 | None:intergenic | 50.0% |
| CTGACCTCAAAGCAGAGTTG+AGG | - | chr3_2:88130188-88130207 | Msa0435110:intron | 50.0% | |
| TGGCACTTCAGGCAATGTCT+AGG | - | chr3_2:88130995-88131014 | Msa0435110:intron | 50.0% | |
| GTCAAGGGAAGATGTCACTG+TGG | - | chr3_2:88131887-88131906 | Msa0435110:CDS | 50.0% | |
| AAGGGAAGATGTCACTGTGG+AGG | - | chr3_2:88131890-88131909 | Msa0435110:CDS | 50.0% | |
| !! | AGCTGGCGGGTTGGAGTCTT+CGG | + | chr3_2:88131856-88131875 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 88129532 | 88132031 | 88129532 | ID=Msa0435110;Name=Msa0435110 |
| chr3_2 | mRNA | 88129532 | 88132031 | 88129532 | ID=Msa0435110-mRNA-1;Parent=Msa0435110;Name=Msa0435110-mRNA-1;_AED=0.34;_eAED=0.34;_QI=1|1|0.75|1|1|1|4|114|448 |
| chr3_2 | exon | 88129532 | 88129795 | 88129532 | ID=Msa0435110-mRNA-1:exon:25910;Parent=Msa0435110-mRNA-1 |
| chr3_2 | exon | 88130129 | 88130189 | 88130129 | ID=Msa0435110-mRNA-1:exon:25909;Parent=Msa0435110-mRNA-1 |
| chr3_2 | exon | 88130286 | 88130668 | 88130286 | ID=Msa0435110-mRNA-1:exon:25908;Parent=Msa0435110-mRNA-1 |
| chr3_2 | exon | 88131278 | 88132031 | 88131278 | ID=Msa0435110-mRNA-1:exon:25907;Parent=Msa0435110-mRNA-1 |
| chr3_2 | five_prime_UTR | 88132031 | 88132031 | 88132031 | ID=Msa0435110-mRNA-1:five_prime_utr;Parent=Msa0435110-mRNA-1 |
| chr3_2 | CDS | 88131278 | 88132030 | 88131278 | ID=Msa0435110-mRNA-1:cds;Parent=Msa0435110-mRNA-1 |
| chr3_2 | CDS | 88130286 | 88130668 | 88130286 | ID=Msa0435110-mRNA-1:cds;Parent=Msa0435110-mRNA-1 |
| chr3_2 | CDS | 88130129 | 88130189 | 88130129 | ID=Msa0435110-mRNA-1:cds;Parent=Msa0435110-mRNA-1 |
| chr3_2 | CDS | 88129646 | 88129795 | 88129646 | ID=Msa0435110-mRNA-1:cds;Parent=Msa0435110-mRNA-1 |
| chr3_2 | three_prime_UTR | 88129532 | 88129645 | 88129532 | ID=Msa0435110-mRNA-1:three_prime_utr;Parent=Msa0435110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
