Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479210 | XP_013462164.1 | 89.509 | 448 | 9 | 4 | 1 | 416 | 2 | 443 | 0.0 | 804 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479210 | sp|Q1PFD1|BLH11_ARATH | 60.377 | 265 | 96 | 6 | 141 | 399 | 19 | 280 | 5.46e-105 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479210 | A0A072V2D2 | 89.509 | 448 | 9 | 4 | 1 | 416 | 2 | 443 | 0.0 | 804 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0479210 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0384760 | Msa0479210 | 0.823956 | 1.047351e-53 | -8.615850e-47 |
| Msa0435110 | Msa0479210 | 0.809795 | 1.585686e-50 | -8.615850e-47 |
| Msa0479180 | Msa0479210 | 0.968760 | 3.874247e-129 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479210 | MtrunA17_Chr3g0141931 | 89.509 | 448 | 9 | 4 | 1 | 416 | 2 | 443 | 0.0 | 804 |
| Msa0479210 | MtrunA17_Chr1g0155681 | 50.903 | 277 | 105 | 8 | 141 | 400 | 173 | 435 | 4.30e-78 | 253 |
| Msa0479210 | MtrunA17_Chr3g0141941 | 45.296 | 287 | 123 | 6 | 131 | 400 | 155 | 424 | 9.68e-71 | 231 |
| Msa0479210 | MtrunA17_Chr4g0025521 | 45.936 | 283 | 135 | 6 | 138 | 410 | 217 | 491 | 8.54e-67 | 225 |
| Msa0479210 | MtrunA17_Chr5g0403251 | 44.364 | 275 | 136 | 8 | 133 | 395 | 329 | 598 | 3.38e-65 | 222 |
| Msa0479210 | MtrunA17_Chr7g0267481 | 46.154 | 286 | 121 | 6 | 136 | 400 | 169 | 442 | 3.49e-65 | 220 |
| Msa0479210 | MtrunA17_Chr1g0177751 | 45.418 | 251 | 129 | 4 | 137 | 382 | 160 | 407 | 9.14e-65 | 219 |
| Msa0479210 | MtrunA17_Chr8g0373801 | 44.322 | 273 | 135 | 6 | 138 | 399 | 388 | 654 | 1.89e-63 | 218 |
| Msa0479210 | MtrunA17_Chr4g0008591 | 41.697 | 271 | 127 | 5 | 135 | 399 | 193 | 438 | 1.41e-61 | 209 |
| Msa0479210 | MtrunA17_Chr4g0028701 | 38.636 | 308 | 147 | 5 | 135 | 400 | 242 | 549 | 2.67e-61 | 209 |
| Msa0479210 | MtrunA17_Chr7g0240371 | 42.322 | 267 | 135 | 4 | 135 | 399 | 134 | 383 | 1.26e-59 | 202 |
| Msa0479210 | MtrunA17_Chr8g0387321 | 55.307 | 179 | 70 | 5 | 211 | 384 | 259 | 432 | 1.06e-57 | 199 |
| Msa0479210 | MtrunA17_Chr2g0327021 | 40.461 | 304 | 138 | 8 | 127 | 400 | 230 | 520 | 1.15e-57 | 199 |
| Msa0479210 | MtrunA17_Chr1g0151681 | 36.090 | 266 | 148 | 7 | 135 | 390 | 240 | 493 | 7.21e-40 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479210 | AT1G75430.1 | 60.377 | 265 | 96 | 6 | 141 | 399 | 19 | 280 | 5.55e-106 | 315 |
| Msa0479210 | AT1G75410.1 | 49.265 | 272 | 126 | 4 | 130 | 397 | 159 | 422 | 6.89e-78 | 250 |
| Msa0479210 | AT1G75410.2 | 49.265 | 272 | 126 | 4 | 130 | 397 | 159 | 422 | 6.89e-78 | 250 |
| Msa0479210 | AT1G19700.1 | 49.291 | 282 | 114 | 6 | 132 | 397 | 159 | 427 | 3.63e-77 | 249 |
| Msa0479210 | AT1G19700.3 | 49.291 | 282 | 114 | 6 | 132 | 397 | 159 | 427 | 3.63e-77 | 249 |
| Msa0479210 | AT1G19700.5 | 49.291 | 282 | 114 | 6 | 132 | 397 | 159 | 427 | 3.63e-77 | 249 |
| Msa0479210 | AT1G19700.4 | 49.291 | 282 | 114 | 6 | 132 | 397 | 159 | 427 | 3.63e-77 | 249 |
| Msa0479210 | AT1G19700.2 | 49.291 | 282 | 114 | 6 | 132 | 397 | 159 | 427 | 3.63e-77 | 249 |
| Msa0479210 | AT2G16400.1 | 47.059 | 289 | 129 | 7 | 116 | 401 | 98 | 365 | 7.07e-77 | 247 |
| Msa0479210 | AT4G34610.2 | 48.175 | 274 | 119 | 7 | 138 | 405 | 140 | 396 | 1.85e-70 | 231 |
| Msa0479210 | AT4G34610.4 | 48.175 | 274 | 119 | 7 | 138 | 405 | 140 | 396 | 1.85e-70 | 231 |
| Msa0479210 | AT4G34610.3 | 48.175 | 274 | 119 | 7 | 138 | 405 | 140 | 396 | 1.85e-70 | 231 |
| Msa0479210 | AT4G34610.1 | 48.175 | 274 | 119 | 7 | 138 | 405 | 140 | 396 | 1.85e-70 | 231 |
| Msa0479210 | AT1G75430.2 | 53.521 | 213 | 90 | 5 | 141 | 347 | 19 | 228 | 1.20e-67 | 216 |
| Msa0479210 | AT4G36870.2 | 46.269 | 268 | 117 | 10 | 138 | 390 | 312 | 567 | 1.11e-61 | 212 |
| Msa0479210 | AT4G36870.1 | 46.269 | 268 | 117 | 10 | 138 | 390 | 312 | 567 | 1.11e-61 | 212 |
| Msa0479210 | AT2G35940.3 | 41.577 | 279 | 129 | 6 | 131 | 382 | 175 | 446 | 4.24e-58 | 202 |
| Msa0479210 | AT2G35940.1 | 41.577 | 279 | 129 | 6 | 131 | 382 | 175 | 446 | 4.24e-58 | 202 |
| Msa0479210 | AT2G35940.2 | 41.577 | 279 | 129 | 6 | 131 | 382 | 175 | 446 | 4.24e-58 | 202 |
| Msa0479210 | AT2G23760.2 | 44.610 | 269 | 119 | 8 | 138 | 389 | 237 | 492 | 1.17e-57 | 199 |
| Msa0479210 | AT2G23760.1 | 44.610 | 269 | 119 | 8 | 138 | 389 | 237 | 492 | 1.17e-57 | 199 |
| Msa0479210 | AT2G23760.3 | 44.610 | 269 | 119 | 8 | 138 | 389 | 237 | 492 | 1.17e-57 | 199 |
| Msa0479210 | AT2G27220.1 | 42.972 | 249 | 109 | 4 | 144 | 391 | 82 | 298 | 2.11e-57 | 194 |
| Msa0479210 | AT2G27220.3 | 42.972 | 249 | 109 | 4 | 144 | 391 | 82 | 298 | 2.11e-57 | 194 |
| Msa0479210 | AT5G02030.1 | 37.801 | 291 | 164 | 3 | 107 | 391 | 139 | 418 | 3.80e-57 | 197 |
| Msa0479210 | AT1G75410.3 | 44.444 | 243 | 123 | 4 | 130 | 368 | 159 | 393 | 9.47e-56 | 189 |
| Msa0479210 | AT2G27220.2 | 42.205 | 263 | 109 | 8 | 144 | 391 | 82 | 316 | 3.56e-55 | 189 |
| Msa0479210 | AT2G27990.1 | 40.769 | 260 | 127 | 4 | 135 | 391 | 259 | 494 | 8.40e-54 | 188 |
| Msa0479210 | AT5G41410.1 | 40.702 | 285 | 141 | 5 | 139 | 401 | 194 | 472 | 6.87e-52 | 184 |
| Msa0479210 | AT2G23760.4 | 37.383 | 321 | 119 | 9 | 138 | 389 | 237 | 544 | 5.33e-48 | 174 |
| Msa0479210 | AT4G36870.4 | 42.915 | 247 | 114 | 10 | 138 | 369 | 312 | 546 | 1.47e-45 | 165 |
| Msa0479210 | AT4G36870.3 | 42.449 | 245 | 114 | 10 | 138 | 367 | 312 | 544 | 2.74e-44 | 162 |
| Msa0479210 | AT4G32980.1 | 36.299 | 281 | 147 | 6 | 120 | 390 | 183 | 441 | 6.96e-40 | 149 |
| Msa0479210 | AT4G32980.2 | 36.299 | 281 | 147 | 6 | 120 | 390 | 183 | 441 | 6.96e-40 | 149 |
| Msa0479210 | AT2G27990.2 | 34.259 | 216 | 115 | 4 | 135 | 347 | 259 | 450 | 7.37e-28 | 115 |
Find 72 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATTCATGGACATTTAT+TGG | 0.202908 | 3_3:-84080540 | Msa0479210:CDS |
| GATCATAAGACCTTGATTTA+AGG | 0.203423 | 3_3:+84080937 | None:intergenic |
| CGTTCTACTTCTACTTCTTA+TGG | 0.209074 | 3_3:-84080749 | Msa0479210:CDS |
| TGAGAAAAGAAAACTGTTTC+AGG | 0.210768 | 3_3:-84079709 | Msa0479210:CDS |
| AGCATTTATTTGGGACATTA+TGG | 0.234641 | 3_3:+84079731 | None:intergenic |
| AGAATTGCTACAGATGTTTC+AGG | 0.303192 | 3_3:+84079549 | None:intergenic |
| ATACTACTTCTTCCATTTGA+TGG | 0.326054 | 3_3:+84079850 | None:intergenic |
| TTGTACATTTCTTCTATCAT+TGG | 0.327367 | 3_3:+84079082 | None:intergenic |
| CACCACCTAGTAGTAGTTCT+TGG | 0.332157 | 3_3:+84081176 | None:intergenic |
| TTCAAAACCAACGACAAGTT+TGG | 0.336930 | 3_3:-84079590 | Msa0479210:CDS |
| GAAGTGACTGTACTGGTTTA+AGG | 0.338310 | 3_3:+84080687 | None:intergenic |
| TGCAAAGCTCATTTCATTGT+TGG | 0.340662 | 3_3:-84080489 | Msa0479210:CDS |
| TTACACTGCTTTGGCACTTC+AGG | 0.345280 | 3_3:-84079787 | Msa0479210:CDS |
| AGATGTCACTGTGGAGGATT+AGG | 0.348390 | 3_3:-84078996 | Msa0479210:exon |
| AGCTGGCGGGTTGGAGTCTT+CGG | 0.349210 | 3_3:+84079039 | None:intergenic |
| ATTAACTTCTCAGAGTCATT+AGG | 0.369658 | 3_3:+84079393 | None:intergenic |
| GAAATGTACAAAGAAGAGTT+TGG | 0.376842 | 3_3:-84079070 | Msa0479210:CDS |
| GTTTCAGGTAACCCTCTAAT+AGG | 0.383713 | 3_3:+84079564 | None:intergenic |
| CTTGAAGATCTTGTTGATGT+TGG | 0.386052 | 3_3:-84080665 | Msa0479210:CDS |
| TTAATCCTGGCTTCCCAAAC+AGG | 0.402326 | 3_3:-84079375 | Msa0479210:CDS |
| TGTTGGTTCAGGTGTCAAAT+TGG | 0.407480 | 3_3:-84079135 | Msa0479210:intron |
| TTTGAAATGATAGCAGGTTT+GGG | 0.408450 | 3_3:-84079822 | Msa0479210:CDS |
| TGCAAAGTGTTACACTGCTT+TGG | 0.409703 | 3_3:-84079796 | Msa0479210:CDS |
| AAAGCAGAGTTGAGGATTCA+TGG | 0.417721 | 3_3:-84080551 | Msa0479210:CDS |
| TCTTATGGAAGTGAGAGTTT+TGG | 0.428359 | 3_3:-84080734 | Msa0479210:CDS |
| TTGTTTCATGGGAGTAGAAC+AGG | 0.428923 | 3_3:-84080599 | Msa0479210:CDS |
| CTGTAGCAATTCTTCGTGCT+TGG | 0.430609 | 3_3:-84079539 | Msa0479210:CDS |
| TTCAATGGTGGAAATGGAGG+TGG | 0.430738 | 3_3:-84080827 | Msa0479210:CDS |
| TATGCTGAGAAGTTGTTTCA+TGG | 0.434153 | 3_3:-84080611 | Msa0479210:CDS |
| GAATCCTCAACTCTGCTTTG+AGG | 0.436275 | 3_3:+84080555 | None:intergenic |
| TGACCAGGCATGAAGTAACT+TGG | 0.451078 | 3_3:+84080911 | None:intergenic |
| CAAGTTTGGAGACCTATTAG+AGG | 0.455849 | 3_3:-84079576 | Msa0479210:CDS |
| TTAAACCTGTTTGGGAAGCC+AGG | 0.480873 | 3_3:+84079370 | None:intergenic |
| CTTGACATAAAATTGTTAGC+TGG | 0.489551 | 3_3:+84079022 | None:intergenic |
| TGACTCTGAGAAGTTAATCC+TGG | 0.499019 | 3_3:-84079388 | Msa0479210:CDS |
| TTTGAATGACACCAAGTTGT+TGG | 0.503416 | 3_3:+84079607 | None:intergenic |
| GCTCATTTCATTGTTGGATG+AGG | 0.504055 | 3_3:-84080483 | Msa0479210:intron |
| CTTGTTAGATTCTCCACCAC+AGG | 0.504734 | 3_3:+84080860 | None:intergenic |
| TGAGAAGTACTACCATCAAA+TGG | 0.506912 | 3_3:-84079862 | Msa0479210:CDS |
| TCCACCACAGGTTGATTACA+AGG | 0.508130 | 3_3:+84080872 | None:intergenic |
| GAAGATCTTGTTGATGTTGG+TGG | 0.515827 | 3_3:-84080662 | Msa0479210:CDS |
| AACCCAAGTTACTTCATGCC+TGG | 0.516099 | 3_3:-84080914 | Msa0479210:CDS |
| TTAATGCAAGGGTACGGCTA+TGG | 0.523142 | 3_3:-84079108 | Msa0479210:CDS |
| CAAATTGGTTCATTAATGCA+AGG | 0.528439 | 3_3:-84079120 | Msa0479210:CDS |
| ATGCTGAGAAGTTGTTTCAT+GGG | 0.532525 | 3_3:-84080610 | Msa0479210:CDS |
| TGGCACTTCAGGCAATGTCT+AGG | 0.533896 | 3_3:-84079776 | Msa0479210:CDS |
| TCTTCAAGAAGTGACTGTAC+TGG | 0.534996 | 3_3:+84080680 | None:intergenic |
| ACATAAAATTGTTAGCTGGC+GGG | 0.535342 | 3_3:+84079026 | None:intergenic |
| AGAAACCGTTCCTTAAATCA+AGG | 0.535526 | 3_3:-84080947 | Msa0479210:CDS |
| TAGGTCTCCAAACTTGTCGT+TGG | 0.537318 | 3_3:+84079583 | None:intergenic |
| GATGTACCTAAAATTAATAG+TGG | 0.538946 | 3_3:-84079687 | Msa0479210:CDS |
| TAAGACCTTGATTTAAGGAA+CGG | 0.549373 | 3_3:+84080942 | None:intergenic |
| AAAATTGTTAGCTGGCGGGT+TGG | 0.557706 | 3_3:+84079030 | None:intergenic |
| AGAATGTCTCTCCAACAACT+TGG | 0.557966 | 3_3:-84079618 | Msa0479210:CDS |
| GACCAGGCATGAAGTAACTT+GGG | 0.566873 | 3_3:+84080912 | None:intergenic |
| GAGAACCAAGAACTACTACT+AGG | 0.567546 | 3_3:-84081181 | Msa0479210:CDS |
| GGTTCATTAATGCAAGGGTA+CGG | 0.572871 | 3_3:-84079114 | Msa0479210:CDS |
| AAATTGGTTCATTAATGCAA+GGG | 0.576729 | 3_3:-84079119 | Msa0479210:CDS |
| GACATAAAATTGTTAGCTGG+CGG | 0.577181 | 3_3:+84079025 | None:intergenic |
| AAGTTTGGAGACCTATTAGA+GGG | 0.581283 | 3_3:-84079575 | Msa0479210:CDS |
| TCACGTGTCTGATCTTGACC+AGG | 0.591778 | 3_3:+84080896 | None:intergenic |
| CAACTCTGCTTTGAGGTCAG+AGG | 0.594657 | 3_3:+84080562 | None:intergenic |
| CATAAGAAGTAGAAGTAGAA+CGG | 0.599560 | 3_3:+84080750 | None:intergenic |
| AATGCATATCATGAATCACT+TGG | 0.609154 | 3_3:-84081124 | Msa0479210:CDS |
| AACAATATTGGACTAGCACA+AGG | 0.612707 | 3_3:-84081091 | Msa0479210:intron |
| GCCTTGTAATCAACCTGTGG+TGG | 0.623528 | 3_3:-84080873 | Msa0479210:CDS |
| AAGGGAAGATGTCACTGTGG+AGG | 0.641601 | 3_3:-84079002 | Msa0479210:CDS |
| CAAGAACTACTACTAGGTGG+TGG | 0.646214 | 3_3:-84081175 | Msa0479210:CDS |
| CTGACCTCAAAGCAGAGTTG+AGG | 0.668038 | 3_3:-84080559 | Msa0479210:CDS |
| AACCAAGAACTACTACTAGG+TGG | 0.711092 | 3_3:-84081178 | Msa0479210:CDS |
| TGAGCCTTGTAATCAACCTG+TGG | 0.732645 | 3_3:-84080876 | Msa0479210:CDS |
| GTCAAGGGAAGATGTCACTG+TGG | 0.757361 | 3_3:-84079005 | Msa0479210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAAAATCAAATTGTTT+TGG | - | chr3_3:84079771-84079790 | Msa0479210:CDS | 15.0% |
| !! | AAAGAAAATGTGAAAAAAAT+TGG | + | chr3_3:84080783-84080802 | None:intergenic | 15.0% |
| !!! | TTTTTTCACATTTTCTTTTA+TGG | - | chr3_3:84080785-84080804 | Msa0479210:CDS | 15.0% |
| !!! | TTTTTCACATTTTCTTTTAT+GGG | - | chr3_3:84080786-84080805 | Msa0479210:CDS | 15.0% |
| !!! | TTTTTCAAAGTTATTTATGA+TGG | - | chr3_3:84080920-84080939 | Msa0479210:CDS | 15.0% |
| !!! | AAAATTCTTTTTATCTTCAT+AGG | + | chr3_3:84081140-84081159 | None:intergenic | 15.0% |
| !!! | AAACAAAAATCAAATTGTTT+TGG | - | chr3_3:84079771-84079790 | Msa0479210:CDS | 15.0% |
| !! | AAAGAAAATGTGAAAAAAAT+TGG | + | chr3_3:84080783-84080802 | None:intergenic | 15.0% |
| !!! | TTTTTTCACATTTTCTTTTA+TGG | - | chr3_3:84080785-84080804 | Msa0479210:CDS | 15.0% |
| !!! | TTTTTCACATTTTCTTTTAT+GGG | - | chr3_3:84080786-84080805 | Msa0479210:CDS | 15.0% |
| !!! | TTTTTCAAAGTTATTTATGA+TGG | - | chr3_3:84080920-84080939 | Msa0479210:CDS | 15.0% |
| !!! | AAAATTCTTTTTATCTTCAT+AGG | + | chr3_3:84081140-84081159 | None:intergenic | 15.0% |
| !!! | ACAAGTGATTATTTTTTCAA+TGG | - | chr3_3:84079254-84079273 | Msa0479210:intron | 20.0% |
| !! | AAAAAGAAAAACAAATTGAG+AGG | - | chr3_3:84079972-84079991 | Msa0479210:intron | 20.0% |
| !! | TATAAGTGTTAGATATACTT+GGG | + | chr3_3:84080135-84080154 | None:intergenic | 20.0% |
| !! | ATATAAGTGTTAGATATACT+TGG | + | chr3_3:84080136-84080155 | None:intergenic | 20.0% |
| !!! | AGAATTTTGATATAAGCTTA+CGG | + | chr3_3:84080604-84080623 | None:intergenic | 20.0% |
| !! | ATTAATGAAATGCTAATTTG+AGG | - | chr3_3:84080662-84080681 | Msa0479210:CDS | 20.0% |
| !! | ATGGTAAATTTCATTAACTT+GGG | - | chr3_3:84080873-84080892 | Msa0479210:CDS | 20.0% |
| !!! | ACAAGTGATTATTTTTTCAA+TGG | - | chr3_3:84079254-84079273 | Msa0479210:intron | 20.0% |
| !! | AAAAAGAAAAACAAATTGAG+AGG | - | chr3_3:84079972-84079991 | Msa0479210:intron | 20.0% |
| !! | TATAAGTGTTAGATATACTT+GGG | + | chr3_3:84080135-84080154 | None:intergenic | 20.0% |
| !! | ATATAAGTGTTAGATATACT+TGG | + | chr3_3:84080136-84080155 | None:intergenic | 20.0% |
| !!! | AGAATTTTGATATAAGCTTA+CGG | + | chr3_3:84080604-84080623 | None:intergenic | 20.0% |
| !! | ATTAATGAAATGCTAATTTG+AGG | - | chr3_3:84080662-84080681 | Msa0479210:CDS | 20.0% |
| !! | ATGGTAAATTTCATTAACTT+GGG | - | chr3_3:84080873-84080892 | Msa0479210:CDS | 20.0% |
| !!! | GTTCTCAAATTGATTTTGAT+GGG | + | chr3_3:84078901-84078920 | None:intergenic | 25.0% |
| !! | GGAACATTTTCTAACAATAT+TGG | - | chr3_3:84078993-84079012 | Msa0479210:exon | 25.0% |
| !!! | AGTGATTATTTTTTCAATGG+TGG | - | chr3_3:84079257-84079276 | Msa0479210:intron | 25.0% |
| !!! | TATTTTTTCAATGGTGGAAA+TGG | - | chr3_3:84079263-84079282 | Msa0479210:intron | 25.0% |
| ! | AAGCTATCTTAGAGAATTTA+TGG | - | chr3_3:84079827-84079846 | Msa0479210:CDS | 25.0% |
| ! | AGCTATCTTAGAGAATTTAT+GGG | - | chr3_3:84079828-84079847 | Msa0479210:CDS | 25.0% |
| ! | AAGTTCATTAGAATAAGTGT+AGG | - | chr3_3:84080016-84080035 | Msa0479210:intron | 25.0% |
| !! | AAGTTGGTTAGTAATTAGTT+GGG | + | chr3_3:84080091-84080110 | None:intergenic | 25.0% |
| !! | AAAGTTGGTTAGTAATTAGT+TGG | + | chr3_3:84080092-84080111 | None:intergenic | 25.0% |
| !!! | ATTTGTTGTGCTTAATTTTC+AGG | - | chr3_3:84080198-84080217 | Msa0479210:intron | 25.0% |
| !! | TCTTTTCTCAGCATTTATTT+GGG | + | chr3_3:84080377-84080396 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAGCATTTATT+TGG | + | chr3_3:84080378-84080397 | None:intergenic | 25.0% |
| ! | GATGTACCTAAAATTAATAG+TGG | - | chr3_3:84080409-84080428 | Msa0479210:intron | 25.0% |
| !! | GACAATCCACTATTAATTTT+AGG | + | chr3_3:84080418-84080437 | None:intergenic | 25.0% |
| ! | TAGCATTTCATTAATAAGAC+AGG | + | chr3_3:84080657-84080676 | None:intergenic | 25.0% |
| ! | GATGGTAAATTTCATTAACT+TGG | - | chr3_3:84080872-84080891 | Msa0479210:CDS | 25.0% |
| ! | TATGTTAATGTATTGAGTGT+TGG | - | chr3_3:84080944-84080963 | Msa0479210:CDS | 25.0% |
| !! | AAATTGGTTCATTAATGCAA+GGG | - | chr3_3:84080977-84080996 | Msa0479210:intron | 25.0% |
| ! | TTGTACATTTCTTCTATCAT+TGG | + | chr3_3:84081017-84081036 | None:intergenic | 25.0% |
| !! | AGCTAACAATTTTATGTCAA+GGG | - | chr3_3:84081076-84081095 | Msa0479210:intron | 25.0% |
| !! | GAAGATAAAAAGAATTTTGC+TGG | - | chr3_3:84081142-84081161 | Msa0479210:CDS | 25.0% |
| !! | AGAATTTTGCTGGAAAATAT+TGG | - | chr3_3:84081152-84081171 | Msa0479210:CDS | 25.0% |
| !! | AATATTTTCTCTCCTGATTT+TGG | + | chr3_3:84081187-84081206 | None:intergenic | 25.0% |
| !!! | GTTCTCAAATTGATTTTGAT+GGG | + | chr3_3:84078901-84078920 | None:intergenic | 25.0% |
| !! | GGAACATTTTCTAACAATAT+TGG | - | chr3_3:84078993-84079012 | Msa0479210:exon | 25.0% |
| !!! | AGTGATTATTTTTTCAATGG+TGG | - | chr3_3:84079257-84079276 | Msa0479210:intron | 25.0% |
| !!! | TATTTTTTCAATGGTGGAAA+TGG | - | chr3_3:84079263-84079282 | Msa0479210:intron | 25.0% |
| ! | AAGCTATCTTAGAGAATTTA+TGG | - | chr3_3:84079827-84079846 | Msa0479210:CDS | 25.0% |
| ! | AGCTATCTTAGAGAATTTAT+GGG | - | chr3_3:84079828-84079847 | Msa0479210:CDS | 25.0% |
| ! | AAGTTCATTAGAATAAGTGT+AGG | - | chr3_3:84080016-84080035 | Msa0479210:intron | 25.0% |
| !! | AAGTTGGTTAGTAATTAGTT+GGG | + | chr3_3:84080091-84080110 | None:intergenic | 25.0% |
| !! | AAAGTTGGTTAGTAATTAGT+TGG | + | chr3_3:84080092-84080111 | None:intergenic | 25.0% |
| !!! | ATTTGTTGTGCTTAATTTTC+AGG | - | chr3_3:84080198-84080217 | Msa0479210:intron | 25.0% |
| !! | TCTTTTCTCAGCATTTATTT+GGG | + | chr3_3:84080377-84080396 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAGCATTTATT+TGG | + | chr3_3:84080378-84080397 | None:intergenic | 25.0% |
| ! | GATGTACCTAAAATTAATAG+TGG | - | chr3_3:84080409-84080428 | Msa0479210:intron | 25.0% |
| !! | GACAATCCACTATTAATTTT+AGG | + | chr3_3:84080418-84080437 | None:intergenic | 25.0% |
| ! | TAGCATTTCATTAATAAGAC+AGG | + | chr3_3:84080657-84080676 | None:intergenic | 25.0% |
| ! | GATGGTAAATTTCATTAACT+TGG | - | chr3_3:84080872-84080891 | Msa0479210:CDS | 25.0% |
| ! | TATGTTAATGTATTGAGTGT+TGG | - | chr3_3:84080944-84080963 | Msa0479210:CDS | 25.0% |
| !! | AAATTGGTTCATTAATGCAA+GGG | - | chr3_3:84080977-84080996 | Msa0479210:intron | 25.0% |
| ! | TTGTACATTTCTTCTATCAT+TGG | + | chr3_3:84081017-84081036 | None:intergenic | 25.0% |
| !! | AGCTAACAATTTTATGTCAA+GGG | - | chr3_3:84081076-84081095 | Msa0479210:intron | 25.0% |
| !! | GAAGATAAAAAGAATTTTGC+TGG | - | chr3_3:84081142-84081161 | Msa0479210:CDS | 25.0% |
| !! | AGAATTTTGCTGGAAAATAT+TGG | - | chr3_3:84081152-84081171 | Msa0479210:CDS | 25.0% |
| !! | AATATTTTCTCTCCTGATTT+TGG | + | chr3_3:84081187-84081206 | None:intergenic | 25.0% |
| !! | AAATTGATTTTGATGGGTCA+TGG | + | chr3_3:84078895-84078914 | None:intergenic | 30.0% |
| !! | GGTTCTCAAATTGATTTTGA+TGG | + | chr3_3:84078902-84078921 | None:intergenic | 30.0% |
| AATGCATATCATGAATCACT+TGG | - | chr3_3:84078972-84078991 | Msa0479210:three_prime_UTR | 30.0% | |
| TAAGACCTTGATTTAAGGAA+CGG | + | chr3_3:84079157-84079176 | None:intergenic | 30.0% | |
| GATCATAAGACCTTGATTTA+AGG | + | chr3_3:84079162-84079181 | None:intergenic | 30.0% | |
| CATAAGAAGTAGAAGTAGAA+CGG | + | chr3_3:84079349-84079368 | None:intergenic | 30.0% | |
| !!! | AGAGTTTTGGTTCTGTTATT+GGG | - | chr3_3:84079375-84079394 | Msa0479210:CDS | 30.0% |
| ! | GGGAAAATGTCAAATAGTTT+TGG | - | chr3_3:84079848-84079867 | Msa0479210:CDS | 30.0% |
| AATAATAAGCACTTGTGAGA+CGG | + | chr3_3:84079930-84079949 | None:intergenic | 30.0% | |
| GTGCTTATTATTGAGAAACA+TGG | - | chr3_3:84079938-84079957 | Msa0479210:intron | 30.0% | |
| !! | GTTAAAGGTACTTACAAAGT+TGG | + | chr3_3:84080107-84080126 | None:intergenic | 30.0% |
| !! | TATACTTGGGAGTTTGTTAA+AGG | + | chr3_3:84080122-84080141 | None:intergenic | 30.0% |
| ATACTACTTCTTCCATTTGA+TGG | + | chr3_3:84080249-84080268 | None:intergenic | 30.0% | |
| !!! | TCATCTTTTGAAATGATAGC+AGG | - | chr3_3:84080268-84080287 | Msa0479210:intron | 30.0% |
| !!! | TTTTGAAATGATAGCAGGTT+TGG | - | chr3_3:84080273-84080292 | Msa0479210:intron | 30.0% |
| ! | TTTGAAATGATAGCAGGTTT+GGG | - | chr3_3:84080274-84080293 | Msa0479210:intron | 30.0% |
| ! | AGCATTTATTTGGGACATTA+TGG | + | chr3_3:84080368-84080387 | None:intergenic | 30.0% |
| TGAGAAAAGAAAACTGTTTC+AGG | - | chr3_3:84080387-84080406 | Msa0479210:intron | 30.0% | |
| ATTAACTTCTCAGAGTCATT+AGG | + | chr3_3:84080706-84080725 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGTTAAACCTGTTT+GGG | + | chr3_3:84080737-84080756 | None:intergenic | 30.0% |
| TTATGGGTAGAAATTGAGTT+AGG | - | chr3_3:84080802-84080821 | Msa0479210:CDS | 30.0% | |
| ! | CAAATTGGTTCATTAATGCA+AGG | - | chr3_3:84080976-84080995 | Msa0479210:CDS | 30.0% |
| GAAATGTACAAAGAAGAGTT+TGG | - | chr3_3:84081026-84081045 | Msa0479210:intron | 30.0% | |
| CTTGACATAAAATTGTTAGC+TGG | + | chr3_3:84081077-84081096 | None:intergenic | 30.0% | |
| ! | CAGCTAACAATTTTATGTCA+AGG | - | chr3_3:84081075-84081094 | Msa0479210:intron | 30.0% |
| !! | AAATTGATTTTGATGGGTCA+TGG | + | chr3_3:84078895-84078914 | None:intergenic | 30.0% |
| !! | GGTTCTCAAATTGATTTTGA+TGG | + | chr3_3:84078902-84078921 | None:intergenic | 30.0% |
| AATGCATATCATGAATCACT+TGG | - | chr3_3:84078972-84078991 | Msa0479210:three_prime_UTR | 30.0% | |
| TAAGACCTTGATTTAAGGAA+CGG | + | chr3_3:84079157-84079176 | None:intergenic | 30.0% | |
| GATCATAAGACCTTGATTTA+AGG | + | chr3_3:84079162-84079181 | None:intergenic | 30.0% | |
| CATAAGAAGTAGAAGTAGAA+CGG | + | chr3_3:84079349-84079368 | None:intergenic | 30.0% | |
| !!! | AGAGTTTTGGTTCTGTTATT+GGG | - | chr3_3:84079375-84079394 | Msa0479210:CDS | 30.0% |
| ! | GGGAAAATGTCAAATAGTTT+TGG | - | chr3_3:84079848-84079867 | Msa0479210:CDS | 30.0% |
| AATAATAAGCACTTGTGAGA+CGG | + | chr3_3:84079930-84079949 | None:intergenic | 30.0% | |
| GTGCTTATTATTGAGAAACA+TGG | - | chr3_3:84079938-84079957 | Msa0479210:intron | 30.0% | |
| !! | GTTAAAGGTACTTACAAAGT+TGG | + | chr3_3:84080107-84080126 | None:intergenic | 30.0% |
| !! | TATACTTGGGAGTTTGTTAA+AGG | + | chr3_3:84080122-84080141 | None:intergenic | 30.0% |
| ATACTACTTCTTCCATTTGA+TGG | + | chr3_3:84080249-84080268 | None:intergenic | 30.0% | |
| !!! | TCATCTTTTGAAATGATAGC+AGG | - | chr3_3:84080268-84080287 | Msa0479210:intron | 30.0% |
| !!! | TTTTGAAATGATAGCAGGTT+TGG | - | chr3_3:84080273-84080292 | Msa0479210:intron | 30.0% |
| ! | TTTGAAATGATAGCAGGTTT+GGG | - | chr3_3:84080274-84080293 | Msa0479210:intron | 30.0% |
| ! | AGCATTTATTTGGGACATTA+TGG | + | chr3_3:84080368-84080387 | None:intergenic | 30.0% |
| TGAGAAAAGAAAACTGTTTC+AGG | - | chr3_3:84080387-84080406 | Msa0479210:intron | 30.0% | |
| ATTAACTTCTCAGAGTCATT+AGG | + | chr3_3:84080706-84080725 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGTTAAACCTGTTT+GGG | + | chr3_3:84080737-84080756 | None:intergenic | 30.0% |
| TTATGGGTAGAAATTGAGTT+AGG | - | chr3_3:84080802-84080821 | Msa0479210:CDS | 30.0% | |
| ! | CAAATTGGTTCATTAATGCA+AGG | - | chr3_3:84080976-84080995 | Msa0479210:CDS | 30.0% |
| GAAATGTACAAAGAAGAGTT+TGG | - | chr3_3:84081026-84081045 | Msa0479210:intron | 30.0% | |
| CTTGACATAAAATTGTTAGC+TGG | + | chr3_3:84081077-84081096 | None:intergenic | 30.0% | |
| ! | CAGCTAACAATTTTATGTCA+AGG | - | chr3_3:84081075-84081094 | Msa0479210:intron | 30.0% |
| !! | AACAATATTGGACTAGCACA+AGG | - | chr3_3:84079005-84079024 | Msa0479210:CDS | 35.0% |
| ! | AGACATTTGATGGATCTACT+TGG | - | chr3_3:84079047-84079066 | Msa0479210:CDS | 35.0% |
| AATAATCACCAGACACAACA+AGG | - | chr3_3:84079083-84079102 | Msa0479210:CDS | 35.0% | |
| AGAAACCGTTCCTTAAATCA+AGG | - | chr3_3:84079149-84079168 | Msa0479210:intron | 35.0% | |
| !! | TTTTTCAATGGTGGAAATGG+AGG | - | chr3_3:84079266-84079285 | Msa0479210:intron | 35.0% |
| CGTTCTACTTCTACTTCTTA+TGG | - | chr3_3:84079347-84079366 | Msa0479210:intron | 35.0% | |
| ! | TCTTATGGAAGTGAGAGTTT+TGG | - | chr3_3:84079362-84079381 | Msa0479210:CDS | 35.0% |
| !!! | GAGAGTTTTGGTTCTGTTAT+TGG | - | chr3_3:84079374-84079393 | Msa0479210:CDS | 35.0% |
| CTTGAAGATCTTGTTGATGT+TGG | - | chr3_3:84079431-84079450 | Msa0479210:intron | 35.0% | |
| ! | TATGCTGAGAAGTTGTTTCA+TGG | - | chr3_3:84079485-84079504 | Msa0479210:intron | 35.0% |
| ! | ATGCTGAGAAGTTGTTTCAT+GGG | - | chr3_3:84079486-84079505 | Msa0479210:intron | 35.0% |
| GAGGATTCATGGACATTTAT+TGG | - | chr3_3:84079556-84079575 | Msa0479210:CDS | 35.0% | |
| TGCAAAGCTCATTTCATTGT+TGG | - | chr3_3:84079607-84079626 | Msa0479210:CDS | 35.0% | |
| ATTTCATTGTTGGATGAGGT+TGG | - | chr3_3:84079617-84079636 | Msa0479210:CDS | 35.0% | |
| GTTAGTAATTAGTTGGGAGT+TGG | + | chr3_3:84080085-84080104 | None:intergenic | 35.0% | |
| !!! | TGTGCTTAATTTTCAGGTTG+AGG | - | chr3_3:84080204-84080223 | Msa0479210:intron | 35.0% |
| !!! | GTGCTTAATTTTCAGGTTGA+GGG | - | chr3_3:84080205-84080224 | Msa0479210:intron | 35.0% |
| !! | TGAGAAGTACTACCATCAAA+TGG | - | chr3_3:84080234-84080253 | Msa0479210:intron | 35.0% |
| TTTGAATGACACCAAGTTGT+TGG | + | chr3_3:84080492-84080511 | None:intergenic | 35.0% | |
| TTCAAAACCAACGACAAGTT+TGG | - | chr3_3:84080506-84080525 | Msa0479210:CDS | 35.0% | |
| AAGTTTGGAGACCTATTAGA+GGG | - | chr3_3:84080521-84080540 | Msa0479210:CDS | 35.0% | |
| AGAATTGCTACAGATGTTTC+AGG | + | chr3_3:84080550-84080569 | None:intergenic | 35.0% | |
| !!! | GGTTTTTGGTTAAACCTGTT+TGG | + | chr3_3:84080738-84080757 | None:intergenic | 35.0% |
| !! | GTCTCTACTTACTTGGTTTT+TGG | + | chr3_3:84080752-84080771 | None:intergenic | 35.0% |
| CACTTTAGTCTCTACTTACT+TGG | + | chr3_3:84080759-84080778 | None:intergenic | 35.0% | |
| !! | AATGTATTGAGTGTTGGTTC+AGG | - | chr3_3:84080950-84080969 | Msa0479210:CDS | 35.0% |
| ACATAAAATTGTTAGCTGGC+GGG | + | chr3_3:84081073-84081092 | None:intergenic | 35.0% | |
| GACATAAAATTGTTAGCTGG+CGG | + | chr3_3:84081074-84081093 | None:intergenic | 35.0% | |
| !! | TCTCCTGATTTTGGAGAAAA+GGG | + | chr3_3:84081178-84081197 | None:intergenic | 35.0% |
| !! | AACAATATTGGACTAGCACA+AGG | - | chr3_3:84079005-84079024 | Msa0479210:CDS | 35.0% |
| ! | AGACATTTGATGGATCTACT+TGG | - | chr3_3:84079047-84079066 | Msa0479210:CDS | 35.0% |
| AATAATCACCAGACACAACA+AGG | - | chr3_3:84079083-84079102 | Msa0479210:CDS | 35.0% | |
| AGAAACCGTTCCTTAAATCA+AGG | - | chr3_3:84079149-84079168 | Msa0479210:intron | 35.0% | |
| !! | TTTTTCAATGGTGGAAATGG+AGG | - | chr3_3:84079266-84079285 | Msa0479210:intron | 35.0% |
| CGTTCTACTTCTACTTCTTA+TGG | - | chr3_3:84079347-84079366 | Msa0479210:intron | 35.0% | |
| ! | TCTTATGGAAGTGAGAGTTT+TGG | - | chr3_3:84079362-84079381 | Msa0479210:CDS | 35.0% |
| !!! | GAGAGTTTTGGTTCTGTTAT+TGG | - | chr3_3:84079374-84079393 | Msa0479210:CDS | 35.0% |
| CTTGAAGATCTTGTTGATGT+TGG | - | chr3_3:84079431-84079450 | Msa0479210:intron | 35.0% | |
| ! | TATGCTGAGAAGTTGTTTCA+TGG | - | chr3_3:84079485-84079504 | Msa0479210:intron | 35.0% |
| ! | ATGCTGAGAAGTTGTTTCAT+GGG | - | chr3_3:84079486-84079505 | Msa0479210:intron | 35.0% |
| GAGGATTCATGGACATTTAT+TGG | - | chr3_3:84079556-84079575 | Msa0479210:CDS | 35.0% | |
| TGCAAAGCTCATTTCATTGT+TGG | - | chr3_3:84079607-84079626 | Msa0479210:CDS | 35.0% | |
| ATTTCATTGTTGGATGAGGT+TGG | - | chr3_3:84079617-84079636 | Msa0479210:CDS | 35.0% | |
| GTTAGTAATTAGTTGGGAGT+TGG | + | chr3_3:84080085-84080104 | None:intergenic | 35.0% | |
| !!! | TGTGCTTAATTTTCAGGTTG+AGG | - | chr3_3:84080204-84080223 | Msa0479210:intron | 35.0% |
| !!! | GTGCTTAATTTTCAGGTTGA+GGG | - | chr3_3:84080205-84080224 | Msa0479210:intron | 35.0% |
| !! | TGAGAAGTACTACCATCAAA+TGG | - | chr3_3:84080234-84080253 | Msa0479210:intron | 35.0% |
| TTTGAATGACACCAAGTTGT+TGG | + | chr3_3:84080492-84080511 | None:intergenic | 35.0% | |
| TTCAAAACCAACGACAAGTT+TGG | - | chr3_3:84080506-84080525 | Msa0479210:CDS | 35.0% | |
| AAGTTTGGAGACCTATTAGA+GGG | - | chr3_3:84080521-84080540 | Msa0479210:CDS | 35.0% | |
| AGAATTGCTACAGATGTTTC+AGG | + | chr3_3:84080550-84080569 | None:intergenic | 35.0% | |
| !!! | GGTTTTTGGTTAAACCTGTT+TGG | + | chr3_3:84080738-84080757 | None:intergenic | 35.0% |
| !! | GTCTCTACTTACTTGGTTTT+TGG | + | chr3_3:84080752-84080771 | None:intergenic | 35.0% |
| CACTTTAGTCTCTACTTACT+TGG | + | chr3_3:84080759-84080778 | None:intergenic | 35.0% | |
| !! | AATGTATTGAGTGTTGGTTC+AGG | - | chr3_3:84080950-84080969 | Msa0479210:CDS | 35.0% |
| ACATAAAATTGTTAGCTGGC+GGG | + | chr3_3:84081073-84081092 | None:intergenic | 35.0% | |
| GACATAAAATTGTTAGCTGG+CGG | + | chr3_3:84081074-84081093 | None:intergenic | 35.0% | |
| !! | TCTCCTGATTTTGGAGAAAA+GGG | + | chr3_3:84081178-84081197 | None:intergenic | 35.0% |
| GAGAACCAAGAACTACTACT+AGG | - | chr3_3:84078915-84078934 | Msa0479210:three_prime_UTR | 40.0% | |
| AACCAAGAACTACTACTAGG+TGG | - | chr3_3:84078918-84078937 | Msa0479210:three_prime_UTR | 40.0% | |
| GAGTCACACAAGACATTTGA+TGG | - | chr3_3:84079037-84079056 | Msa0479210:CDS | 40.0% | |
| CAAGGTCTATCCCTTTCTTT+AGG | - | chr3_3:84079101-84079120 | Msa0479210:CDS | 40.0% | |
| CATGTGAGAGCCTAAAGAAA+GGG | + | chr3_3:84079114-84079133 | None:intergenic | 40.0% | |
| !! | GAAGTGACTGTACTGGTTTA+AGG | + | chr3_3:84079412-84079431 | None:intergenic | 40.0% |
| TCTTCAAGAAGTGACTGTAC+TGG | + | chr3_3:84079419-84079438 | None:intergenic | 40.0% | |
| GAAGATCTTGTTGATGTTGG+TGG | - | chr3_3:84079434-84079453 | Msa0479210:intron | 40.0% | |
| TTGTTTCATGGGAGTAGAAC+AGG | - | chr3_3:84079497-84079516 | Msa0479210:intron | 40.0% | |
| AAAGCAGAGTTGAGGATTCA+TGG | - | chr3_3:84079545-84079564 | Msa0479210:CDS | 40.0% | |
| GCTCATTTCATTGTTGGATG+AGG | - | chr3_3:84079613-84079632 | Msa0479210:CDS | 40.0% | |
| ! | TGCAAAGTGTTACACTGCTT+TGG | - | chr3_3:84080300-84080319 | Msa0479210:intron | 40.0% |
| AGAATGTCTCTCCAACAACT+TGG | - | chr3_3:84080478-84080497 | Msa0479210:intron | 40.0% | |
| CAAGTTTGGAGACCTATTAG+AGG | - | chr3_3:84080520-84080539 | Msa0479210:CDS | 40.0% | |
| ! | GTTTCAGGTAACCCTCTAAT+AGG | + | chr3_3:84080535-84080554 | None:intergenic | 40.0% |
| ! | TGACTCTGAGAAGTTAATCC+TGG | - | chr3_3:84080708-84080727 | Msa0479210:CDS | 40.0% |
| !! | TGTTGGTTCAGGTGTCAAAT+TGG | - | chr3_3:84080961-84080980 | Msa0479210:CDS | 40.0% |
| GGTTCATTAATGCAAGGGTA+CGG | - | chr3_3:84080982-84081001 | Msa0479210:intron | 40.0% | |
| !! | CTCTCCTGATTTTGGAGAAA+AGG | + | chr3_3:84081179-84081198 | None:intergenic | 40.0% |
| GAGAACCAAGAACTACTACT+AGG | - | chr3_3:84078915-84078934 | Msa0479210:three_prime_UTR | 40.0% | |
| AACCAAGAACTACTACTAGG+TGG | - | chr3_3:84078918-84078937 | Msa0479210:three_prime_UTR | 40.0% | |
| GAGTCACACAAGACATTTGA+TGG | - | chr3_3:84079037-84079056 | Msa0479210:CDS | 40.0% | |
| CAAGGTCTATCCCTTTCTTT+AGG | - | chr3_3:84079101-84079120 | Msa0479210:CDS | 40.0% | |
| CATGTGAGAGCCTAAAGAAA+GGG | + | chr3_3:84079114-84079133 | None:intergenic | 40.0% | |
| !! | GAAGTGACTGTACTGGTTTA+AGG | + | chr3_3:84079412-84079431 | None:intergenic | 40.0% |
| TCTTCAAGAAGTGACTGTAC+TGG | + | chr3_3:84079419-84079438 | None:intergenic | 40.0% | |
| GAAGATCTTGTTGATGTTGG+TGG | - | chr3_3:84079434-84079453 | Msa0479210:intron | 40.0% | |
| TTGTTTCATGGGAGTAGAAC+AGG | - | chr3_3:84079497-84079516 | Msa0479210:intron | 40.0% | |
| AAAGCAGAGTTGAGGATTCA+TGG | - | chr3_3:84079545-84079564 | Msa0479210:CDS | 40.0% | |
| GCTCATTTCATTGTTGGATG+AGG | - | chr3_3:84079613-84079632 | Msa0479210:CDS | 40.0% | |
| ! | TGCAAAGTGTTACACTGCTT+TGG | - | chr3_3:84080300-84080319 | Msa0479210:intron | 40.0% |
| AGAATGTCTCTCCAACAACT+TGG | - | chr3_3:84080478-84080497 | Msa0479210:intron | 40.0% | |
| CAAGTTTGGAGACCTATTAG+AGG | - | chr3_3:84080520-84080539 | Msa0479210:CDS | 40.0% | |
| ! | GTTTCAGGTAACCCTCTAAT+AGG | + | chr3_3:84080535-84080554 | None:intergenic | 40.0% |
| ! | TGACTCTGAGAAGTTAATCC+TGG | - | chr3_3:84080708-84080727 | Msa0479210:CDS | 40.0% |
| !! | TGTTGGTTCAGGTGTCAAAT+TGG | - | chr3_3:84080961-84080980 | Msa0479210:CDS | 40.0% |
| GGTTCATTAATGCAAGGGTA+CGG | - | chr3_3:84080982-84081001 | Msa0479210:intron | 40.0% | |
| !! | CTCTCCTGATTTTGGAGAAA+AGG | + | chr3_3:84081179-84081198 | None:intergenic | 40.0% |
| CACCACCTAGTAGTAGTTCT+TGG | + | chr3_3:84078923-84078942 | None:intergenic | 45.0% | |
| CAAGAACTACTACTAGGTGG+TGG | - | chr3_3:84078921-84078940 | Msa0479210:three_prime_UTR | 45.0% | |
| GCATGTGAGAGCCTAAAGAA+AGG | + | chr3_3:84079115-84079134 | None:intergenic | 45.0% | |
| AACCCAAGTTACTTCATGCC+TGG | - | chr3_3:84079182-84079201 | Msa0479210:intron | 45.0% | |
| GACCAGGCATGAAGTAACTT+GGG | + | chr3_3:84079187-84079206 | None:intergenic | 45.0% | |
| TGACCAGGCATGAAGTAACT+TGG | + | chr3_3:84079188-84079207 | None:intergenic | 45.0% | |
| ! | TGAGCCTTGTAATCAACCTG+TGG | - | chr3_3:84079220-84079239 | Msa0479210:intron | 45.0% |
| !! | TCCACCACAGGTTGATTACA+AGG | + | chr3_3:84079227-84079246 | None:intergenic | 45.0% |
| CTTGTTAGATTCTCCACCAC+AGG | + | chr3_3:84079239-84079258 | None:intergenic | 45.0% | |
| ! | TTCAATGGTGGAAATGGAGG+TGG | - | chr3_3:84079269-84079288 | Msa0479210:intron | 45.0% |
| GAATCCTCAACTCTGCTTTG+AGG | + | chr3_3:84079544-84079563 | None:intergenic | 45.0% | |
| ! | AAGCACTTGTGAGACGGATT+AGG | + | chr3_3:84079924-84079943 | None:intergenic | 45.0% |
| TTACACTGCTTTGGCACTTC+AGG | - | chr3_3:84080309-84080328 | Msa0479210:intron | 45.0% | |
| TAGGTCTCCAAACTTGTCGT+TGG | + | chr3_3:84080516-84080535 | None:intergenic | 45.0% | |
| CTGTAGCAATTCTTCGTGCT+TGG | - | chr3_3:84080557-84080576 | Msa0479210:CDS | 45.0% | |
| TTAATCCTGGCTTCCCAAAC+AGG | - | chr3_3:84080721-84080740 | Msa0479210:CDS | 45.0% | |
| TTAAACCTGTTTGGGAAGCC+AGG | + | chr3_3:84080729-84080748 | None:intergenic | 45.0% | |
| !! | TGCGCATTGATTGATGTCGA+TGG | - | chr3_3:84080854-84080873 | Msa0479210:CDS | 45.0% |
| ! | TTAATGCAAGGGTACGGCTA+TGG | - | chr3_3:84080988-84081007 | Msa0479210:intron | 45.0% |
| ! | AAAATTGTTAGCTGGCGGGT+TGG | + | chr3_3:84081069-84081088 | None:intergenic | 45.0% |
| AGATGTCACTGTGGAGGATT+AGG | - | chr3_3:84081100-84081119 | Msa0479210:CDS | 45.0% | |
| ! | TGGCCCTTTTCTCCAAAATC+AGG | - | chr3_3:84081172-84081191 | Msa0479210:CDS | 45.0% |
| CACCACCTAGTAGTAGTTCT+TGG | + | chr3_3:84078923-84078942 | None:intergenic | 45.0% | |
| CAAGAACTACTACTAGGTGG+TGG | - | chr3_3:84078921-84078940 | Msa0479210:three_prime_UTR | 45.0% | |
| GCATGTGAGAGCCTAAAGAA+AGG | + | chr3_3:84079115-84079134 | None:intergenic | 45.0% | |
| AACCCAAGTTACTTCATGCC+TGG | - | chr3_3:84079182-84079201 | Msa0479210:intron | 45.0% | |
| GACCAGGCATGAAGTAACTT+GGG | + | chr3_3:84079187-84079206 | None:intergenic | 45.0% | |
| TGACCAGGCATGAAGTAACT+TGG | + | chr3_3:84079188-84079207 | None:intergenic | 45.0% | |
| ! | TGAGCCTTGTAATCAACCTG+TGG | - | chr3_3:84079220-84079239 | Msa0479210:intron | 45.0% |
| !! | TCCACCACAGGTTGATTACA+AGG | + | chr3_3:84079227-84079246 | None:intergenic | 45.0% |
| CTTGTTAGATTCTCCACCAC+AGG | + | chr3_3:84079239-84079258 | None:intergenic | 45.0% | |
| ! | TTCAATGGTGGAAATGGAGG+TGG | - | chr3_3:84079269-84079288 | Msa0479210:intron | 45.0% |
| GAATCCTCAACTCTGCTTTG+AGG | + | chr3_3:84079544-84079563 | None:intergenic | 45.0% | |
| ! | AAGCACTTGTGAGACGGATT+AGG | + | chr3_3:84079924-84079943 | None:intergenic | 45.0% |
| TTACACTGCTTTGGCACTTC+AGG | - | chr3_3:84080309-84080328 | Msa0479210:intron | 45.0% | |
| TAGGTCTCCAAACTTGTCGT+TGG | + | chr3_3:84080516-84080535 | None:intergenic | 45.0% | |
| CTGTAGCAATTCTTCGTGCT+TGG | - | chr3_3:84080557-84080576 | Msa0479210:CDS | 45.0% | |
| TTAATCCTGGCTTCCCAAAC+AGG | - | chr3_3:84080721-84080740 | Msa0479210:CDS | 45.0% | |
| TTAAACCTGTTTGGGAAGCC+AGG | + | chr3_3:84080729-84080748 | None:intergenic | 45.0% | |
| !! | TGCGCATTGATTGATGTCGA+TGG | - | chr3_3:84080854-84080873 | Msa0479210:CDS | 45.0% |
| ! | TTAATGCAAGGGTACGGCTA+TGG | - | chr3_3:84080988-84081007 | Msa0479210:intron | 45.0% |
| ! | AAAATTGTTAGCTGGCGGGT+TGG | + | chr3_3:84081069-84081088 | None:intergenic | 45.0% |
| AGATGTCACTGTGGAGGATT+AGG | - | chr3_3:84081100-84081119 | Msa0479210:CDS | 45.0% | |
| ! | TGGCCCTTTTCTCCAAAATC+AGG | - | chr3_3:84081172-84081191 | Msa0479210:CDS | 45.0% |
| ! | GGGATAGACCTTGTTGTGTC+TGG | + | chr3_3:84079094-84079113 | None:intergenic | 50.0% |
| TCACGTGTCTGATCTTGACC+AGG | + | chr3_3:84079203-84079222 | None:intergenic | 50.0% | |
| GCCTTGTAATCAACCTGTGG+TGG | - | chr3_3:84079223-84079242 | Msa0479210:intron | 50.0% | |
| ! | GGAGGTGGAACTTTTGCTTC+AGG | - | chr3_3:84079284-84079303 | Msa0479210:intron | 50.0% |
| !! | CAACTCTGCTTTGAGGTCAG+AGG | + | chr3_3:84079537-84079556 | None:intergenic | 50.0% |
| CTGACCTCAAAGCAGAGTTG+AGG | - | chr3_3:84079537-84079556 | Msa0479210:CDS | 50.0% | |
| TGGCACTTCAGGCAATGTCT+AGG | - | chr3_3:84080320-84080339 | Msa0479210:intron | 50.0% | |
| GTCAAGGGAAGATGTCACTG+TGG | - | chr3_3:84081091-84081110 | Msa0479210:intron | 50.0% | |
| AAGGGAAGATGTCACTGTGG+AGG | - | chr3_3:84081094-84081113 | Msa0479210:CDS | 50.0% | |
| ! | GGGATAGACCTTGTTGTGTC+TGG | + | chr3_3:84079094-84079113 | None:intergenic | 50.0% |
| TCACGTGTCTGATCTTGACC+AGG | + | chr3_3:84079203-84079222 | None:intergenic | 50.0% | |
| GCCTTGTAATCAACCTGTGG+TGG | - | chr3_3:84079223-84079242 | Msa0479210:intron | 50.0% | |
| ! | GGAGGTGGAACTTTTGCTTC+AGG | - | chr3_3:84079284-84079303 | Msa0479210:intron | 50.0% |
| !! | CAACTCTGCTTTGAGGTCAG+AGG | + | chr3_3:84079537-84079556 | None:intergenic | 50.0% |
| CTGACCTCAAAGCAGAGTTG+AGG | - | chr3_3:84079537-84079556 | Msa0479210:CDS | 50.0% | |
| TGGCACTTCAGGCAATGTCT+AGG | - | chr3_3:84080320-84080339 | Msa0479210:intron | 50.0% | |
| GTCAAGGGAAGATGTCACTG+TGG | - | chr3_3:84081091-84081110 | Msa0479210:intron | 50.0% | |
| AAGGGAAGATGTCACTGTGG+AGG | - | chr3_3:84081094-84081113 | Msa0479210:CDS | 50.0% | |
| !! | AGCTGGCGGGTTGGAGTCTT+CGG | + | chr3_3:84081060-84081079 | None:intergenic | 60.0% |
| !! | AGCTGGCGGGTTGGAGTCTT+CGG | + | chr3_3:84081060-84081079 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 84078882 | 84081236 | 84078882 | ID=Msa0479210;Name=Msa0479210 |
| chr3_3 | mRNA | 84078882 | 84081236 | 84078882 | ID=Msa0479210-mRNA-1;Parent=Msa0479210;Name=Msa0479210-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0.75|0.4|1|1|1|5|115|416 |
| chr3_3 | exon | 84078882 | 84079146 | 84078882 | ID=Msa0479210-mRNA-1:exon:23869;Parent=Msa0479210-mRNA-1 |
| chr3_3 | exon | 84079359 | 84079419 | 84079359 | ID=Msa0479210-mRNA-1:exon:23868;Parent=Msa0479210-mRNA-1 |
| chr3_3 | exon | 84079516 | 84079898 | 84079516 | ID=Msa0479210-mRNA-1:exon:23867;Parent=Msa0479210-mRNA-1 |
| chr3_3 | exon | 84080484 | 84080995 | 84080484 | ID=Msa0479210-mRNA-1:exon:23866;Parent=Msa0479210-mRNA-1 |
| chr3_3 | exon | 84081092 | 84081236 | 84081092 | ID=Msa0479210-mRNA-1:exon:23865;Parent=Msa0479210-mRNA-1 |
| chr3_3 | CDS | 84081092 | 84081236 | 84081092 | ID=Msa0479210-mRNA-1:cds;Parent=Msa0479210-mRNA-1 |
| chr3_3 | CDS | 84080484 | 84080995 | 84080484 | ID=Msa0479210-mRNA-1:cds;Parent=Msa0479210-mRNA-1 |
| chr3_3 | CDS | 84079516 | 84079898 | 84079516 | ID=Msa0479210-mRNA-1:cds;Parent=Msa0479210-mRNA-1 |
| chr3_3 | CDS | 84079359 | 84079419 | 84079359 | ID=Msa0479210-mRNA-1:cds;Parent=Msa0479210-mRNA-1 |
| chr3_3 | CDS | 84078997 | 84079146 | 84078997 | ID=Msa0479210-mRNA-1:cds;Parent=Msa0479210-mRNA-1 |
| chr3_3 | three_prime_UTR | 84078882 | 84078996 | 84078882 | ID=Msa0479210-mRNA-1:three_prime_utr;Parent=Msa0479210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
