AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436520 MtrunA17_Chr4g0076131 93.902 82 5 0 1 82 1 82 1.45e-55 167
Msa0436520 MtrunA17_Chr4g0076141 75.000 64 16 0 19 82 4 67 9.87e-34 111
Msa0436520 MtrunA17_Chr5g0447651 54.762 84 36 1 1 82 1 84 3.47e-31 105
Msa0436520 MtrunA17_Chr8g0389741 50.909 55 27 0 28 82 368 422 1.49e-16 72.4
Msa0436520 MtrunA17_Chr8g0378621 47.826 69 29 1 21 82 350 418 3.19e-16 71.6
Msa0436520 MtrunA17_Chr8g0381081 44.118 68 35 1 18 82 44 111 6.68e-16 68.2
Msa0436520 MtrunA17_Chr4g0075031 52.727 55 26 0 28 82 382 436 5.92e-15 67.8
Msa0436520 MtrunA17_Chr3g0121271 44.643 56 31 0 27 82 361 416 6.44e-15 67.8
Msa0436520 MtrunA17_Chr4g0040911 49.091 55 28 0 28 82 37 91 7.03e-15 65.5
Msa0436520 MtrunA17_Chr1g0177171 47.273 55 29 0 28 82 406 460 8.71e-15 67.4
Msa0436520 MtrunA17_Chr7g0271411 47.273 55 29 0 28 82 160 214 1.11e-14 66.6
Msa0436520 MtrunA17_Chr3g0096451 50.000 56 28 0 27 82 111 166 1.87e-14 65.9
Msa0436520 MtrunA17_Chr2g0304061 51.786 56 26 1 27 82 157 211 3.17e-14 65.5
Msa0436520 MtrunA17_Chr1g0193131 47.541 61 31 1 22 82 414 473 3.27e-14 65.9
Msa0436520 MtrunA17_Chr5g0439251 49.091 55 28 0 28 82 382 436 3.27e-14 65.9
Msa0436520 MtrunA17_Chr5g0419121 40.845 71 39 2 12 82 8 75 4.88e-14 64.7
Msa0436520 MtrunA17_Chr8g0378371 36.585 82 44 2 1 82 13 86 6.65e-14 61.6
Msa0436520 MtrunA17_Chr3g0120401 47.458 59 30 1 24 82 153 210 1.48e-13 63.2
Msa0436520 MtrunA17_Chr6g0487261 47.368 57 29 1 27 82 368 424 2.00e-13 63.5
Msa0436520 MtrunA17_Chr1g0213651 47.273 55 28 1 28 82 276 329 3.55e-13 62.8
Msa0436520 MtrunA17_Chr8g0378361 37.333 75 46 1 8 82 10 83 3.76e-13 61.2
Msa0436520 MtrunA17_Chr5g0443331 49.091 55 28 0 28 82 108 162 3.90e-13 62.4
Msa0436520 MtrunA17_Chr8g0380231 54.167 48 22 0 35 82 24 71 5.12e-13 58.9
Msa0436520 MtrunA17_Chr5g0401301 50.000 56 27 1 28 82 329 384 6.18e-13 62.0
Msa0436520 MtrunA17_Chr4g0043151 45.455 55 29 1 28 82 21 74 5.47e-12 58.2
Msa0436520 MtrunA17_Chr8g0378401 37.179 78 45 2 5 82 12 85 1.05e-11 56.2
Msa0436520 MtrunA17_Chr4g0061401 41.538 65 36 2 18 82 14 76 1.09e-11 57.8
Msa0436520 MtrunA17_Chr8g0378381 37.179 78 45 2 5 82 12 85 1.47e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436520 AT5G35740.1 62.319 69 25 1 15 82 17 85 2.24e-29 101
Msa0436520 AT2G04910.1 65.152 66 23 0 17 82 4 69 9.59e-29 100
Msa0436520 AT2G04910.2 65.152 66 23 0 17 82 4 69 1.56e-28 99.0
Msa0436520 AT3G58100.1 41.176 85 47 1 1 82 11 95 4.26e-18 74.3
Msa0436520 AT3G58100.2 41.176 85 47 1 1 82 87 171 1.85e-17 73.9
Msa0436520 AT4G29360.2 47.059 68 36 0 15 82 388 455 2.27e-16 72.4
Msa0436520 AT4G29360.1 51.786 56 27 0 27 82 390 445 2.55e-16 72.0
Msa0436520 AT1G29380.4 51.786 56 27 0 27 82 147 202 2.82e-16 70.5
Msa0436520 AT1G29380.2 51.786 56 27 0 27 82 147 202 2.82e-16 70.5
Msa0436520 AT2G30933.2 41.558 77 41 1 10 82 60 136 3.17e-16 68.9
Msa0436520 AT2G30933.3 41.558 77 41 1 10 82 60 136 3.17e-16 68.9
Msa0436520 AT1G29380.1 51.786 56 27 0 27 82 147 202 4.63e-16 70.9
Msa0436520 AT1G29380.3 51.786 56 27 0 27 82 147 202 5.36e-16 70.1
Msa0436520 AT2G30933.1 41.558 77 41 1 10 82 60 136 6.05e-16 69.7
Msa0436520 AT5G56590.1 49.091 55 28 0 28 82 369 423 7.92e-16 70.9
Msa0436520 AT3G13560.4 52.727 55 26 0 28 82 362 416 1.22e-15 70.1
Msa0436520 AT3G13560.1 52.727 55 26 0 28 82 362 416 1.22e-15 70.1
Msa0436520 AT3G13560.2 52.727 55 26 0 28 82 362 416 1.22e-15 70.1
Msa0436520 AT3G13560.5 52.727 55 26 0 28 82 362 416 1.22e-15 70.1
Msa0436520 AT3G13560.3 52.727 55 26 0 28 82 362 416 1.22e-15 70.1
Msa0436520 AT4G05430.1 43.939 66 34 1 20 82 12 77 2.49e-15 66.2
Msa0436520 AT4G05430.2 43.939 66 34 1 20 82 37 102 3.42e-15 65.5
Msa0436520 AT4G05430.3 43.939 66 34 1 20 82 37 102 3.72e-15 66.2
Msa0436520 AT5G55180.1 42.424 66 38 0 17 82 361 426 5.14e-15 68.6
Msa0436520 AT5G55180.2 42.424 66 38 0 17 82 361 426 5.51e-15 68.6
Msa0436520 AT4G26830.2 45.455 55 30 0 28 82 371 425 1.48e-14 67.0
Msa0436520 AT4G26830.1 45.455 55 30 0 28 82 367 421 1.64e-14 67.0
Msa0436520 AT1G66855.1 40.000 75 43 1 8 82 8 80 3.15e-14 62.8
Msa0436520 AT1G11820.2 43.836 73 34 1 17 82 363 435 3.20e-14 66.2
Msa0436520 AT1G11820.3 43.836 73 34 1 17 82 363 435 4.38e-14 65.9
Msa0436520 AT2G05790.1 45.455 55 30 0 28 82 384 438 5.59e-14 65.5
Msa0436520 AT5G67460.2 45.455 55 30 0 28 82 293 347 3.01e-13 63.5
Msa0436520 AT5G67460.1 45.455 55 30 0 28 82 293 347 3.11e-13 63.5
Msa0436520 AT1G66852.1 37.333 75 45 1 8 82 8 80 3.20e-13 60.1
Msa0436520 AT5G63250.1 45.614 57 29 1 28 82 42 98 5.60e-13 60.1
Msa0436520 AT4G13600.1 49.091 55 27 1 28 82 61 114 6.27e-13 61.6
Msa0436520 AT1G79480.1 47.273 55 28 1 28 82 311 364 6.47e-13 62.4
Msa0436520 AT1G79480.2 47.273 55 28 1 28 82 310 363 6.79e-13 62.4
Msa0436520 AT1G18650.2 34.615 78 47 2 5 82 1 74 1.28e-12 58.9
Msa0436520 AT1G66870.2 32.099 81 53 1 2 82 29 107 2.23e-12 58.5
Msa0436520 AT5G63240.1 34.783 92 49 3 1 82 6 96 2.38e-12 58.2
Msa0436520 AT1G18650.1 34.615 78 47 2 5 82 1 74 2.42e-12 59.3
Msa0436520 AT1G66870.1 32.051 78 51 1 5 82 5 80 3.79e-12 57.4
Msa0436520 AT4G16165.1 34.615 78 49 1 5 82 5 80 9.40e-12 56.2
Msa0436520 AT5G63230.1 48.214 56 28 1 27 82 25 79 7.65e-11 53.9

Find 45 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGGTCCTTCATAGTATT+TGG 0.188691 3_2:-90137183 None:intergenic
ATAGAATGTAGTTGGCATTT+AGG 0.196616 3_2:-90137914 None:intergenic
CATAGTATTTGGAAGGTAAC+AGG 0.246733 3_2:-90137172 None:intergenic
TAGAATGTAGTTGGCATTTA+GGG 0.285616 3_2:-90137913 None:intergenic
TGAGAAACTCATGGTTCTTC+AGG 0.286713 3_2:-90136814 None:intergenic
GAAAATTTCAGGACAATTCA+TGG 0.287986 3_2:+90137041 Msa0436520:intron
ATGTATATTATGTCATTATA+AGG 0.303665 3_2:+90136760 Msa0436520:five_prime_UTR
TATATCCCTTGAATGAAGTT+TGG 0.309961 3_2:+90137716 Msa0436520:three_prime_UTR
TAAATGCCAACTACATTCTA+TGG 0.342090 3_2:+90137916 Msa0436520:three_prime_UTR
ATATCCCTTGAATGAAGTTT+GGG 0.347148 3_2:+90137717 Msa0436520:three_prime_UTR
GCCCTCTGCAGATCATCATC+TGG 0.401963 3_2:-90137090 None:intergenic
CAAGTGACATAAGGCATTGC+TGG 0.424094 3_2:-90137945 None:intergenic
ATGGATTGGGCTTGTCATGT+TGG 0.425033 3_2:+90137114 Msa0436520:CDS
ATCTGCAGAGGGCTATGGAT+TGG 0.450182 3_2:+90137100 Msa0436520:CDS
ATTACCCCAAACTTCATTCA+AGG 0.455553 3_2:-90137722 None:intergenic
TCTGCAGAGGGCTATGGATT+GGG 0.456199 3_2:+90137101 Msa0436520:CDS
CCCTCTGCAGATCATCATCT+GGG 0.469613 3_2:-90137089 None:intergenic
ACCTGATGCTTGAAAAGGTA+GGG 0.472261 3_2:-90136871 None:intergenic
TGATGATCTGCAGAGGGCTA+TGG 0.487175 3_2:+90137095 Msa0436520:CDS
GTTGGCATTTAGGGTGGGAA+AGG 0.508942 3_2:-90137904 None:intergenic
TTTCAGGACAATTCATGGAA+TGG 0.512225 3_2:+90137046 Msa0436520:intron
AATGTAGTTGGCATTTAGGG+TGG 0.525675 3_2:-90137910 None:intergenic
GATTGGGCTTGTCATGTTGG+TGG 0.526500 3_2:+90137117 Msa0436520:CDS
TTACCTTCCAAATACTATGA+AGG 0.531309 3_2:+90137176 Msa0436520:CDS
TTTGATCATTGAGAAACTCA+TGG 0.534173 3_2:-90136823 None:intergenic
TTTACTTGGATCAAGATCAC+TGG 0.543257 3_2:-90137283 None:intergenic
TATTTGGAAGGTAACAGGGT+TGG 0.547742 3_2:-90137167 None:intergenic
TTCACACCATAGAATGTAGT+TGG 0.556550 3_2:-90137922 None:intergenic
CTTGAAAAGGTAGGGTCACA+AGG 0.557030 3_2:-90136863 None:intergenic
ATAGTAATTGTTGAAGACAT+AGG 0.558849 3_2:-90137208 None:intergenic
TTACCCCAAACTTCATTCAA+GGG 0.566615 3_2:-90137721 None:intergenic
ATGTAGTTGGCATTTAGGGT+GGG 0.571532 3_2:-90137909 None:intergenic
GGTCCTTCATAGTATTTGGA+AGG 0.583934 3_2:-90137179 None:intergenic
TGTTGAAGACATAGGAGGCA+TGG 0.588471 3_2:-90137200 None:intergenic
ATAGTATTTGGAAGGTAACA+GGG 0.607638 3_2:-90137171 None:intergenic
TACCTGATGCTTGAAAAGGT+AGG 0.609047 3_2:-90136872 None:intergenic
GATATGAAGTAGTATTAGCA+TGG 0.620936 3_2:+90137827 Msa0436520:three_prime_UTR
TTATAAGGAATATAGTTGCA+AGG 0.622058 3_2:+90136775 Msa0436520:five_prime_UTR
CCCAGATGATGATCTGCAGA+GGG 0.624946 3_2:+90137089 Msa0436520:CDS
TATTAGAAGTTCAAGCACAA+AGG 0.629090 3_2:+90137228 Msa0436520:exon
TAGAAGTTCAAGCACAAAGG+AGG 0.631093 3_2:+90137231 Msa0436520:exon
GTAATTGTTGAAGACATAGG+AGG 0.633395 3_2:-90137205 None:intergenic
CCCCAGATGATGATCTGCAG+AGG 0.639650 3_2:+90137088 Msa0436520:CDS
CCTCTGCAGATCATCATCTG+GGG 0.680867 3_2:-90137088 None:intergenic
TATCCCTTGAATGAAGTTTG+GGG 0.706452 3_2:+90137718 Msa0436520:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTCAATTTTTTATT+TGG + chr3_2:90137491-90137510 Msa0436520:intron 10.0%
!!! TATTTTCTCAATTTTTTATT+TGG + chr3_2:90137491-90137510 Msa0436520:intron 10.0%
!! ATGTATATTATGTCATTATA+AGG + chr3_2:90136760-90136779 Msa0436520:five_prime_UTR 15.0%
!!! TTATTTTTCTGCAATTTAAA+TGG + chr3_2:90137870-90137889 Msa0436520:three_prime_UTR 15.0%
!! ATGTATATTATGTCATTATA+AGG + chr3_2:90136760-90136779 Msa0436520:five_prime_UTR 15.0%
!!! TTATTTTTCTGCAATTTAAA+TGG + chr3_2:90137870-90137889 Msa0436520:three_prime_UTR 15.0%
!! GTCATTTAAGTAAAATCAAA+AGG - chr3_2:90137595-90137614 None:intergenic 20.0%
!!! GTTTTTCTTTGTTTAATTAC+AGG + chr3_2:90137671-90137690 Msa0436520:intron 20.0%
!! GTCATTTAAGTAAAATCAAA+AGG - chr3_2:90137595-90137614 None:intergenic 20.0%
!!! GTTTTTCTTTGTTTAATTAC+AGG + chr3_2:90137671-90137690 Msa0436520:intron 20.0%
! TTATAAGGAATATAGTTGCA+AGG + chr3_2:90136775-90136794 Msa0436520:five_prime_UTR 25.0%
! ACGTATTATTGGAAAATTTC+AGG + chr3_2:90137030-90137049 Msa0436520:intron 25.0%
! ATAGTAATTGTTGAAGACAT+AGG - chr3_2:90137211-90137230 None:intergenic 25.0%
!!! ATTATGAGAGAGTATTTACT+TGG - chr3_2:90137300-90137319 None:intergenic 25.0%
! TTGACTGTTACTATATGTAT+TGG - chr3_2:90137465-90137484 None:intergenic 25.0%
! TTCATAGATGAATACCATAT+GGG + chr3_2:90137560-90137579 Msa0436520:intron 25.0%
! CAAAGAAAAACCATATCATT+TGG - chr3_2:90137662-90137681 None:intergenic 25.0%
! TTATAAGGAATATAGTTGCA+AGG + chr3_2:90136775-90136794 Msa0436520:five_prime_UTR 25.0%
! ACGTATTATTGGAAAATTTC+AGG + chr3_2:90137030-90137049 Msa0436520:intron 25.0%
! ATAGTAATTGTTGAAGACAT+AGG - chr3_2:90137211-90137230 None:intergenic 25.0%
!!! ATTATGAGAGAGTATTTACT+TGG - chr3_2:90137300-90137319 None:intergenic 25.0%
! TTGACTGTTACTATATGTAT+TGG - chr3_2:90137465-90137484 None:intergenic 25.0%
! TTCATAGATGAATACCATAT+GGG + chr3_2:90137560-90137579 Msa0436520:intron 25.0%
! CAAAGAAAAACCATATCATT+TGG - chr3_2:90137662-90137681 None:intergenic 25.0%
TTTGATCATTGAGAAACTCA+TGG - chr3_2:90136826-90136845 None:intergenic 30.0%
! ATTTTACCTGATGCTTGAAA+AGG - chr3_2:90136879-90136898 None:intergenic 30.0%
ACTTGGAAGAACATAAATGA+GGG - chr3_2:90136910-90136929 None:intergenic 30.0%
AACTTGGAAGAACATAAATG+AGG - chr3_2:90136911-90136930 None:intergenic 30.0%
! TGATGATGATGACGTATTAT+TGG + chr3_2:90137019-90137038 Msa0436520:intron 30.0%
GAAAATTTCAGGACAATTCA+TGG + chr3_2:90137041-90137060 Msa0436520:intron 30.0%
ATAGTATTTGGAAGGTAACA+GGG - chr3_2:90137174-90137193 None:intergenic 30.0%
TTACCTTCCAAATACTATGA+AGG + chr3_2:90137176-90137195 Msa0436520:CDS 30.0%
TATTAGAAGTTCAAGCACAA+AGG + chr3_2:90137228-90137247 Msa0436520:exon 30.0%
GTTCATAGATGAATACCATA+TGG + chr3_2:90137559-90137578 Msa0436520:intron 30.0%
CATTATCAGTCCAAATGATA+TGG + chr3_2:90137649-90137668 Msa0436520:intron 30.0%
! CTTTGTTTAATTACAGGTCA+TGG + chr3_2:90137677-90137696 Msa0436520:intron 30.0%
TATATCCCTTGAATGAAGTT+TGG + chr3_2:90137716-90137735 Msa0436520:three_prime_UTR 30.0%
ATATCCCTTGAATGAAGTTT+GGG + chr3_2:90137717-90137736 Msa0436520:three_prime_UTR 30.0%
GATATGAAGTAGTATTAGCA+TGG + chr3_2:90137827-90137846 Msa0436520:three_prime_UTR 30.0%
TAGAATGTAGTTGGCATTTA+GGG - chr3_2:90137916-90137935 None:intergenic 30.0%
ATAGAATGTAGTTGGCATTT+AGG - chr3_2:90137917-90137936 None:intergenic 30.0%
TAAATGCCAACTACATTCTA+TGG + chr3_2:90137916-90137935 Msa0436520:three_prime_UTR 30.0%
TTTGATCATTGAGAAACTCA+TGG - chr3_2:90136826-90136845 None:intergenic 30.0%
! ATTTTACCTGATGCTTGAAA+AGG - chr3_2:90136879-90136898 None:intergenic 30.0%
ACTTGGAAGAACATAAATGA+GGG - chr3_2:90136910-90136929 None:intergenic 30.0%
AACTTGGAAGAACATAAATG+AGG - chr3_2:90136911-90136930 None:intergenic 30.0%
! TGATGATGATGACGTATTAT+TGG + chr3_2:90137019-90137038 Msa0436520:intron 30.0%
GAAAATTTCAGGACAATTCA+TGG + chr3_2:90137041-90137060 Msa0436520:intron 30.0%
ATAGTATTTGGAAGGTAACA+GGG - chr3_2:90137174-90137193 None:intergenic 30.0%
TTACCTTCCAAATACTATGA+AGG + chr3_2:90137176-90137195 Msa0436520:CDS 30.0%
TATTAGAAGTTCAAGCACAA+AGG + chr3_2:90137228-90137247 Msa0436520:exon 30.0%
GTTCATAGATGAATACCATA+TGG + chr3_2:90137559-90137578 Msa0436520:intron 30.0%
CATTATCAGTCCAAATGATA+TGG + chr3_2:90137649-90137668 Msa0436520:intron 30.0%
! CTTTGTTTAATTACAGGTCA+TGG + chr3_2:90137677-90137696 Msa0436520:intron 30.0%
TATATCCCTTGAATGAAGTT+TGG + chr3_2:90137716-90137735 Msa0436520:three_prime_UTR 30.0%
ATATCCCTTGAATGAAGTTT+GGG + chr3_2:90137717-90137736 Msa0436520:three_prime_UTR 30.0%
GATATGAAGTAGTATTAGCA+TGG + chr3_2:90137827-90137846 Msa0436520:three_prime_UTR 30.0%
TAGAATGTAGTTGGCATTTA+GGG - chr3_2:90137916-90137935 None:intergenic 30.0%
ATAGAATGTAGTTGGCATTT+AGG - chr3_2:90137917-90137936 None:intergenic 30.0%
TAAATGCCAACTACATTCTA+TGG + chr3_2:90137916-90137935 Msa0436520:three_prime_UTR 30.0%
CTAGCTGAATGTGATAAACT+TGG - chr3_2:90136927-90136946 None:intergenic 35.0%
ATTCAGCTAGAGAGTTTACT+TGG + chr3_2:90136937-90136956 Msa0436520:intron 35.0%
TTTCAGGACAATTCATGGAA+TGG + chr3_2:90137046-90137065 Msa0436520:intron 35.0%
CATAGTATTTGGAAGGTAAC+AGG - chr3_2:90137175-90137194 None:intergenic 35.0%
GTAATTGTTGAAGACATAGG+AGG - chr3_2:90137208-90137227 None:intergenic 35.0%
TTTACTTGGATCAAGATCAC+TGG - chr3_2:90137286-90137305 None:intergenic 35.0%
!! GAGAAGTATTGGTTCTATAG+AGG - chr3_2:90137390-90137409 None:intergenic 35.0%
TATCCCTTGAATGAAGTTTG+GGG + chr3_2:90137718-90137737 Msa0436520:three_prime_UTR 35.0%
TTACCCCAAACTTCATTCAA+GGG - chr3_2:90137724-90137743 None:intergenic 35.0%
ATTACCCCAAACTTCATTCA+AGG - chr3_2:90137725-90137744 None:intergenic 35.0%
TTCACACCATAGAATGTAGT+TGG - chr3_2:90137925-90137944 None:intergenic 35.0%
CTAGCTGAATGTGATAAACT+TGG - chr3_2:90136927-90136946 None:intergenic 35.0%
ATTCAGCTAGAGAGTTTACT+TGG + chr3_2:90136937-90136956 Msa0436520:intron 35.0%
TTTCAGGACAATTCATGGAA+TGG + chr3_2:90137046-90137065 Msa0436520:intron 35.0%
CATAGTATTTGGAAGGTAAC+AGG - chr3_2:90137175-90137194 None:intergenic 35.0%
GTAATTGTTGAAGACATAGG+AGG - chr3_2:90137208-90137227 None:intergenic 35.0%
TTTACTTGGATCAAGATCAC+TGG - chr3_2:90137286-90137305 None:intergenic 35.0%
!! GAGAAGTATTGGTTCTATAG+AGG - chr3_2:90137390-90137409 None:intergenic 35.0%
TATCCCTTGAATGAAGTTTG+GGG + chr3_2:90137718-90137737 Msa0436520:three_prime_UTR 35.0%
TTACCCCAAACTTCATTCAA+GGG - chr3_2:90137724-90137743 None:intergenic 35.0%
ATTACCCCAAACTTCATTCA+AGG - chr3_2:90137725-90137744 None:intergenic 35.0%
TTCACACCATAGAATGTAGT+TGG - chr3_2:90137925-90137944 None:intergenic 35.0%
TGAGAAACTCATGGTTCTTC+AGG - chr3_2:90136817-90136836 None:intergenic 40.0%
ACCTGATGCTTGAAAAGGTA+GGG - chr3_2:90136874-90136893 None:intergenic 40.0%
TACCTGATGCTTGAAAAGGT+AGG - chr3_2:90136875-90136894 None:intergenic 40.0%
TATTTGGAAGGTAACAGGGT+TGG - chr3_2:90137170-90137189 None:intergenic 40.0%
GGTCCTTCATAGTATTTGGA+AGG - chr3_2:90137182-90137201 None:intergenic 40.0%
GCATGGTCCTTCATAGTATT+TGG - chr3_2:90137186-90137205 None:intergenic 40.0%
TAGAAGTTCAAGCACAAAGG+AGG + chr3_2:90137231-90137250 Msa0436520:exon 40.0%
AGTGTGACACTAACACGTAT+TGG - chr3_2:90137433-90137452 None:intergenic 40.0%
! AAAGGCTTTTGTGTCCCATA+TGG - chr3_2:90137577-90137596 None:intergenic 40.0%
! ATGTAGTTGGCATTTAGGGT+GGG - chr3_2:90137912-90137931 None:intergenic 40.0%
AATGTAGTTGGCATTTAGGG+TGG - chr3_2:90137913-90137932 None:intergenic 40.0%
TGAGAAACTCATGGTTCTTC+AGG - chr3_2:90136817-90136836 None:intergenic 40.0%
ACCTGATGCTTGAAAAGGTA+GGG - chr3_2:90136874-90136893 None:intergenic 40.0%
TACCTGATGCTTGAAAAGGT+AGG - chr3_2:90136875-90136894 None:intergenic 40.0%
TATTTGGAAGGTAACAGGGT+TGG - chr3_2:90137170-90137189 None:intergenic 40.0%
GGTCCTTCATAGTATTTGGA+AGG - chr3_2:90137182-90137201 None:intergenic 40.0%
GCATGGTCCTTCATAGTATT+TGG - chr3_2:90137186-90137205 None:intergenic 40.0%
TAGAAGTTCAAGCACAAAGG+AGG + chr3_2:90137231-90137250 Msa0436520:exon 40.0%
AGTGTGACACTAACACGTAT+TGG - chr3_2:90137433-90137452 None:intergenic 40.0%
! AAAGGCTTTTGTGTCCCATA+TGG - chr3_2:90137577-90137596 None:intergenic 40.0%
! ATGTAGTTGGCATTTAGGGT+GGG - chr3_2:90137912-90137931 None:intergenic 40.0%
AATGTAGTTGGCATTTAGGG+TGG - chr3_2:90137913-90137932 None:intergenic 40.0%
CTTGAAAAGGTAGGGTCACA+AGG - chr3_2:90136866-90136885 None:intergenic 45.0%
!! ACCCTACCTTTTCAAGCATC+AGG + chr3_2:90136870-90136889 Msa0436520:CDS 45.0%
!! ATGGATTGGGCTTGTCATGT+TGG + chr3_2:90137114-90137133 Msa0436520:CDS 45.0%
TGTTGAAGACATAGGAGGCA+TGG - chr3_2:90137203-90137222 None:intergenic 45.0%
! ACGTCTTCGAGGAGAAGTAT+TGG - chr3_2:90137401-90137420 None:intergenic 45.0%
CTTACACAGACACCGACAAA+GGG - chr3_2:90137538-90137557 None:intergenic 45.0%
ACTTACACAGACACCGACAA+AGG - chr3_2:90137539-90137558 None:intergenic 45.0%
CTTGAAAAGGTAGGGTCACA+AGG - chr3_2:90136866-90136885 None:intergenic 45.0%
!! ACCCTACCTTTTCAAGCATC+AGG + chr3_2:90136870-90136889 Msa0436520:CDS 45.0%
!! ATGGATTGGGCTTGTCATGT+TGG + chr3_2:90137114-90137133 Msa0436520:CDS 45.0%
TGTTGAAGACATAGGAGGCA+TGG - chr3_2:90137203-90137222 None:intergenic 45.0%
! ACGTCTTCGAGGAGAAGTAT+TGG - chr3_2:90137401-90137420 None:intergenic 45.0%
CTTACACAGACACCGACAAA+GGG - chr3_2:90137538-90137557 None:intergenic 45.0%
ACTTACACAGACACCGACAA+AGG - chr3_2:90137539-90137558 None:intergenic 45.0%
CCTCTGCAGATCATCATCTG+GGG - chr3_2:90137091-90137110 None:intergenic 50.0%
CCCTCTGCAGATCATCATCT+GGG - chr3_2:90137092-90137111 None:intergenic 50.0%
CCCAGATGATGATCTGCAGA+GGG + chr3_2:90137089-90137108 Msa0436520:CDS 50.0%
TGATGATCTGCAGAGGGCTA+TGG + chr3_2:90137095-90137114 Msa0436520:CDS 50.0%
ATCTGCAGAGGGCTATGGAT+TGG + chr3_2:90137100-90137119 Msa0436520:CDS 50.0%
TCTGCAGAGGGCTATGGATT+GGG + chr3_2:90137101-90137120 Msa0436520:CDS 50.0%
GATTGGGCTTGTCATGTTGG+TGG + chr3_2:90137117-90137136 Msa0436520:CDS 50.0%
GTCAGTATCACGCCCTTTGT+CGG + chr3_2:90137523-90137542 Msa0436520:intron 50.0%
! GTTGGCATTTAGGGTGGGAA+AGG - chr3_2:90137907-90137926 None:intergenic 50.0%
CCTCTGCAGATCATCATCTG+GGG - chr3_2:90137091-90137110 None:intergenic 50.0%
CCCTCTGCAGATCATCATCT+GGG - chr3_2:90137092-90137111 None:intergenic 50.0%
CCCAGATGATGATCTGCAGA+GGG + chr3_2:90137089-90137108 Msa0436520:CDS 50.0%
TGATGATCTGCAGAGGGCTA+TGG + chr3_2:90137095-90137114 Msa0436520:CDS 50.0%
ATCTGCAGAGGGCTATGGAT+TGG + chr3_2:90137100-90137119 Msa0436520:CDS 50.0%
TCTGCAGAGGGCTATGGATT+GGG + chr3_2:90137101-90137120 Msa0436520:CDS 50.0%
GATTGGGCTTGTCATGTTGG+TGG + chr3_2:90137117-90137136 Msa0436520:CDS 50.0%
GTCAGTATCACGCCCTTTGT+CGG + chr3_2:90137523-90137542 Msa0436520:intron 50.0%
! GTTGGCATTTAGGGTGGGAA+AGG - chr3_2:90137907-90137926 None:intergenic 50.0%
CCCCAGATGATGATCTGCAG+AGG + chr3_2:90137088-90137107 Msa0436520:CDS 55.0%
GCCCTCTGCAGATCATCATC+TGG - chr3_2:90137093-90137112 None:intergenic 55.0%
GGACACTGAACACGTCTTCG+AGG - chr3_2:90137412-90137431 None:intergenic 55.0%
CCCCAGATGATGATCTGCAG+AGG + chr3_2:90137088-90137107 Msa0436520:CDS 55.0%
GCCCTCTGCAGATCATCATC+TGG - chr3_2:90137093-90137112 None:intergenic 55.0%
GGACACTGAACACGTCTTCG+AGG - chr3_2:90137412-90137431 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 90136736 90137960 90136736 ID=Msa0436520;Name=Msa0436520
chr3_2 mRNA 90136736 90137960 90136736 ID=Msa0436520-mRNA-1;Parent=Msa0436520;Name=Msa0436520-mRNA-1;_AED=0.25;_eAED=0.25;_QI=89|1|1|1|0.5|0.66|3|335|82
chr3_2 exon 90136736 90136891 90136736 ID=Msa0436520-mRNA-1:exon:26781;Parent=Msa0436520-mRNA-1
chr3_2 exon 90137052 90137300 90137052 ID=Msa0436520-mRNA-1:exon:26782;Parent=Msa0436520-mRNA-1
chr3_2 exon 90137693 90137960 90137693 ID=Msa0436520-mRNA-1:exon:26783;Parent=Msa0436520-mRNA-1
chr3_2 five_prime_UTR 90136736 90136824 90136736 ID=Msa0436520-mRNA-1:five_prime_utr;Parent=Msa0436520-mRNA-1
chr3_2 CDS 90136825 90136891 90136825 ID=Msa0436520-mRNA-1:cds;Parent=Msa0436520-mRNA-1
chr3_2 CDS 90137052 90137233 90137052 ID=Msa0436520-mRNA-1:cds;Parent=Msa0436520-mRNA-1
chr3_2 three_prime_UTR 90137234 90137300 90137234 ID=Msa0436520-mRNA-1:three_prime_utr;Parent=Msa0436520-mRNA-1
chr3_2 three_prime_UTR 90137693 90137960 90137693 ID=Msa0436520-mRNA-1:three_prime_utr;Parent=Msa0436520-mRNA-1
Gene Sequence

>Msa0436520

ATGAGTTTCTCAATGATCAAAATTTTGATAGCTATGCTCCTTGTGACCCTACCTTTTCAAGCATCAGGACAATTCATGGAATGGTGCATAGCTGATGAGCAGACCCCAGATGATGATCTGCAGAGGGCTATGGATTGGGCTTGTCATGTTGGTGGAGCAAATTGTAGCAACATACAAGTGAACCAACCCTGTTACCTTCCAAATACTATGAAGGACCATGCCTCCTATGTCTTCAACAATTACTATTAG
Protein sequence

>Msa0436520

MSFSMIKILIAMLLVTLPFQASGQFMEWCIADEQTPDDDLQRAMDWACHVGGANCSNIQVNQPCYLPNTMKDHASYVFNNYY*