AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436570 MtrunA17_Chr4g0076161 82.060 301 51 2 1 301 1 298 1.46e-175 495
Msa0436570 MtrunA17_Chr6g0463791 77.152 302 61 4 1 301 1 295 1.32e-156 447
Msa0436570 MtrunA17_Chr6g0463611 69.281 306 86 4 1 305 15 313 5.31e-151 426
Msa0436570 MtrunA17_Chr5g0403351 57.333 300 117 3 9 301 7 302 9.71e-115 340
Msa0436570 MtrunA17_Chr5g0403331 53.094 307 134 2 1 301 1 303 1.67e-108 324
Msa0436570 MtrunA17_Chr5g0403321 54.770 283 119 2 31 304 26 308 6.02e-103 310
Msa0436570 MtrunA17_Chr5g0445441 51.211 289 136 4 15 300 53 339 4.84e-95 291
Msa0436570 MtrunA17_Chr5g0445451 48.173 301 152 4 1 300 1 298 1.05e-93 286
Msa0436570 MtrunA17_Chr5g0445461 47.508 301 154 4 1 300 1 298 4.98e-93 285
Msa0436570 MtrunA17_Chr3g0101821 46.000 300 155 2 6 300 2 299 6.15e-91 280
Msa0436570 MtrunA17_Chr3g0101761 46.939 294 146 3 12 300 11 299 8.36e-91 279
Msa0436570 MtrunA17_Chr1g0162801 46.405 306 153 6 1 300 1 301 3.72e-90 277
Msa0436570 MtrunA17_Chr3g0101691 47.059 306 153 5 1 300 1 303 1.39e-89 276
Msa0436570 MtrunA17_Chr5g0431641 48.966 290 143 5 12 300 13 298 3.40e-89 275
Msa0436570 MtrunA17_Chr5g0445531 49.618 262 130 2 39 300 38 297 5.99e-89 274
Msa0436570 MtrunA17_Chr1g0162811 46.179 301 154 5 5 300 2 299 8.63e-89 274
Msa0436570 MtrunA17_Chr5g0445751 46.284 296 153 4 9 300 11 304 1.74e-88 267
Msa0436570 MtrunA17_Chr3g0101631 48.013 302 140 5 9 304 8 298 1.00e-87 271
Msa0436570 MtrunA17_Chr5g0445381 48.630 292 141 5 12 300 44 329 1.48e-86 269
Msa0436570 MtrunA17_Chr8g0357421 45.361 291 151 4 14 300 13 299 9.83e-86 266
Msa0436570 MtrunA17_Chr3g0101751 44.000 300 161 2 6 300 9 306 1.34e-85 266
Msa0436570 MtrunA17_Chr8g0357431 46.392 291 149 3 14 300 13 300 3.83e-85 265
Msa0436570 MtrunA17_Chr3g0101571 45.578 294 154 2 10 300 7 297 4.54e-85 264
Msa0436570 MtrunA17_Chr3g0101611 48.872 266 128 2 38 298 37 299 1.91e-84 263
Msa0436570 MtrunA17_Chr3g0101661 43.791 306 164 4 1 301 1 303 7.51e-84 261
Msa0436570 MtrunA17_Chr3g0101721 45.205 292 152 4 14 300 13 301 9.35e-84 261
Msa0436570 MtrunA17_Chr5g0431671 47.727 264 136 2 38 300 37 299 1.00e-83 261
Msa0436570 MtrunA17_Chr3g0101711 47.297 296 143 7 16 301 11 303 1.59e-83 260
Msa0436570 MtrunA17_Chr3g0101731 45.183 301 155 5 7 300 2 299 4.64e-83 259
Msa0436570 MtrunA17_Chr3g0101811 43.564 303 162 3 7 302 2 302 1.27e-82 258
Msa0436570 MtrunA17_Chr8g0361471 44.147 299 158 4 9 300 3 299 5.49e-82 256
Msa0436570 MtrunA17_Chr3g0101581 43.243 296 160 3 10 300 8 300 1.39e-81 255
Msa0436570 MtrunA17_Chr4g0024771 44.483 290 156 5 12 300 13 298 1.47e-81 255
Msa0436570 MtrunA17_Chr6g0466331 43.813 299 159 4 9 300 3 299 5.23e-81 254
Msa0436570 MtrunA17_Chr6g0465511 43.813 299 159 4 9 300 3 299 6.01e-81 254
Msa0436570 MtrunA17_Chr3g0101601 45.973 298 144 4 9 300 8 294 6.54e-81 253
Msa0436570 MtrunA17_Chr3g0101621 45.918 294 145 4 10 300 6 288 1.73e-80 252
Msa0436570 MtrunA17_Chr3g0101651 44.300 307 162 5 1 301 1 304 2.19e-80 252
Msa0436570 MtrunA17_Chr3g0101701 49.254 268 128 4 39 300 38 303 2.78e-80 252
Msa0436570 MtrunA17_Chr1g0167321 45.364 302 154 6 5 300 2 298 3.72e-80 251
Msa0436570 MtrunA17_Chr3g0101671 43.000 300 162 4 7 300 7 303 1.05e-79 251
Msa0436570 MtrunA17_Chr3g0101801 41.584 303 170 2 3 300 6 306 2.57e-79 249
Msa0436570 MtrunA17_Chr3g0101831 45.361 291 152 4 14 300 13 300 3.75e-79 249
Msa0436570 MtrunA17_Chr5g0445421 48.432 287 115 7 19 300 93 351 3.14e-78 248
Msa0436570 MtrunA17_Chr3g0116681 44.444 288 148 4 18 300 21 301 5.78e-78 246
Msa0436570 MtrunA17_Chr5g0446161 44.718 284 150 3 19 300 21 299 1.53e-75 239
Msa0436570 MtrunA17_Chr4g0020041 41.414 297 165 5 9 300 8 300 2.56e-75 239
Msa0436570 MtrunA17_Chr5g0446151 44.326 282 149 3 22 300 24 300 4.96e-75 238
Msa0436570 MtrunA17_Chr2g0280261 46.014 276 140 3 28 300 23 292 1.34e-74 237
Msa0436570 MtrunA17_Chr6g0463801 41.429 280 157 3 21 300 23 295 3.42e-69 223
Msa0436570 MtrunA17_Chr3g0101741 42.035 226 129 1 77 300 1 226 4.05e-64 208
Msa0436570 MtrunA17_Chr4g0058231 38.889 306 167 5 8 300 1 299 5.77e-63 207
Msa0436570 MtrunA17_Chr5g0445411 61.006 159 54 3 14 169 21 174 6.84e-62 194
Msa0436570 MtrunA17_Chr4g0058191 36.913 298 173 4 8 300 1 288 4.70e-60 199
Msa0436570 MtrunA17_Chr4g0058201 38.790 281 161 4 24 300 17 290 2.00e-59 197
Msa0436570 MtrunA17_Chr1g0156101 38.966 290 157 5 29 300 22 309 1.15e-58 196
Msa0436570 MtrunA17_Chr5g0430031 35.410 305 182 9 5 300 3 301 4.35e-56 189
Msa0436570 MtrunA17_Chr3g0116741 37.987 308 162 9 5 300 23 313 6.91e-55 186
Msa0436570 MtrunA17_Chr4g0047631 37.671 292 172 5 15 300 23 310 9.47e-55 186
Msa0436570 MtrunA17_Chr4g0047661 35.430 302 180 6 8 300 20 315 1.04e-54 186
Msa0436570 MtrunA17_Chr1g0156081 37.931 290 160 5 29 300 46 333 1.07e-54 186
Msa0436570 MtrunA17_Chr5g0430091 35.738 305 178 8 5 300 6 301 3.10e-54 184
Msa0436570 MtrunA17_Chr6g0484811 34.812 293 178 6 16 300 15 302 1.14e-53 182
Msa0436570 MtrunA17_Chr4g0011861 37.722 281 162 4 31 302 21 297 1.99e-53 177
Msa0436570 MtrunA17_Chr5g0430081 37.255 306 164 10 11 300 6 299 8.69e-53 180
Msa0436570 MtrunA17_Chr4g0047691 35.354 297 184 4 8 300 21 313 2.87e-52 179
Msa0436570 MtrunA17_Chr5g0419691 37.410 278 162 4 31 300 21 294 1.36e-51 177
Msa0436570 MtrunA17_Chr5g0430131 35.161 310 181 9 1 300 1 300 2.80e-51 176
Msa0436570 MtrunA17_Chr6g0472311 38.849 278 148 7 40 300 42 314 4.65e-51 176
Msa0436570 MtrunA17_Chr1g0174421 34.539 304 184 8 11 302 15 315 8.65e-51 171
Msa0436570 MtrunA17_Chr5g0405001 32.686 309 182 8 3 300 18 311 1.87e-50 174
Msa0436570 MtrunA17_Chr4g0011871 37.634 279 161 4 31 300 21 295 2.13e-50 174
Msa0436570 MtrunA17_Chr5g0430101 36.803 269 157 7 1 265 1 260 3.14e-50 173
Msa0436570 MtrunA17_Chr8g0390881 33.775 302 178 6 7 299 13 301 3.65e-50 173
Msa0436570 MtrunA17_Chr4g0047641 33.445 299 190 4 8 300 19 314 3.83e-50 173
Msa0436570 MtrunA17_Chr7g0218601 35.495 293 174 6 16 300 15 300 8.23e-50 172
Msa0436570 MtrunA17_Chr5g0430111 33.443 305 185 8 5 300 6 301 1.36e-49 170
Msa0436570 MtrunA17_Chr4g0011881 37.410 278 161 5 31 300 22 294 1.72e-49 171
Msa0436570 MtrunA17_Chr4g0058281 33.562 292 184 5 16 300 23 311 3.15e-49 171
Msa0436570 MtrunA17_Chr5g0431631 57.143 140 57 3 12 151 25 161 7.56e-49 160
Msa0436570 MtrunA17_Chr8g0372251 34.799 273 161 7 40 300 36 303 1.22e-48 169
Msa0436570 MtrunA17_Chr4g0058261 35.316 269 162 6 41 300 64 329 1.13e-47 167
Msa0436570 MtrunA17_Chr1g0174461 32.907 313 187 7 1 301 4 305 1.88e-47 166
Msa0436570 MtrunA17_Chr4g0011931 36.149 296 176 5 15 302 6 296 1.96e-47 161
Msa0436570 MtrunA17_Chr2g0310381 34.653 303 174 7 10 300 1 291 3.54e-47 165
Msa0436570 MtrunA17_Chr4g0011921 34.653 303 175 5 8 300 5 294 5.82e-47 164
Msa0436570 MtrunA17_Chr8g0382901 34.448 299 181 7 6 300 465 752 6.41e-47 169
Msa0436570 MtrunA17_Chr8g0382901 35.849 265 150 6 38 300 27 273 7.23e-43 157
Msa0436570 MtrunA17_Chr2g0310391 33.445 299 183 6 10 300 1 291 8.65e-47 164
Msa0436570 MtrunA17_Chr5g0406651 37.410 278 162 4 31 300 22 295 9.74e-47 164
Msa0436570 MtrunA17_Chr4g0035921 34.066 273 166 6 13 278 11 276 1.27e-46 164
Msa0436570 MtrunA17_Chr7g0218611 36.655 281 169 4 27 300 21 299 1.93e-45 160
Msa0436570 MtrunA17_Chr5g0430171 38.696 230 129 6 5 230 6 227 2.52e-45 153
Msa0436570 MtrunA17_Chr6g0484841 35.808 229 141 3 37 263 35 259 7.44e-45 159
Msa0436570 MtrunA17_Chr4g0011961 36.304 303 173 8 6 300 3 293 1.16e-44 158
Msa0436570 MtrunA17_Chr4g0011981 38.043 276 158 6 33 300 24 294 1.31e-43 155
Msa0436570 MtrunA17_Chr8g0344151 32.841 271 169 5 37 298 34 300 1.71e-43 155
Msa0436570 MtrunA17_Chr5g0431511 37.091 275 153 8 39 300 33 300 8.71e-43 154
Msa0436570 MtrunA17_Chr4g0076181 72.727 99 25 1 205 303 68 164 1.05e-42 144
Msa0436570 MtrunA17_Chr4g0076181 72.152 79 22 0 77 155 1 79 7.09e-36 127
Msa0436570 MtrunA17_Chr4g0011901 35.689 283 165 5 26 300 21 294 1.91e-42 152
Msa0436570 MtrunA17_Chr1g0174441 31.561 301 187 8 16 300 29 326 2.46e-42 153
Msa0436570 MtrunA17_Chr1g0174451 32.107 299 186 7 16 300 10 305 4.27e-42 152
Msa0436570 MtrunA17_Chr3g0084921 31.373 306 189 8 9 300 8 306 4.47e-42 152
Msa0436570 MtrunA17_Chr5g0431501 36.296 270 162 6 39 300 33 300 5.05e-42 151
Msa0436570 MtrunA17_Chr5g0431461 36.296 270 162 6 39 300 33 300 5.05e-42 151
Msa0436570 MtrunA17_Chr7g0258221 34.483 261 152 6 8 261 10 258 6.26e-42 151
Msa0436570 MtrunA17_Chr1g0156061 35.870 276 118 7 29 300 45 265 1.78e-41 149
Msa0436570 MtrunA17_Chr8g0344191 31.034 290 185 6 18 298 50 333 2.87e-41 150
Msa0436570 MtrunA17_Chr5g0401681 36.735 294 152 12 8 284 6 282 8.26e-41 148
Msa0436570 MtrunA17_Chr1g0174481 32.215 298 182 7 16 300 9 299 8.74e-41 148
Msa0436570 MtrunA17_Chr8g0344181 32.103 271 171 5 37 298 36 302 1.55e-39 145
Msa0436570 MtrunA17_Chr7g0235551 30.872 298 183 9 16 298 10 299 1.25e-38 142
Msa0436570 MtrunA17_Chr7g0254641 32.258 279 169 9 37 300 35 308 2.82e-38 141
Msa0436570 MtrunA17_Chr2g0304871 32.258 279 169 7 38 299 36 311 3.26e-38 141
Msa0436570 MtrunA17_Chr1g0174471 30.333 300 190 6 16 300 25 320 4.08e-38 141
Msa0436570 MtrunA17_Chr8g0355961 30.333 300 188 8 3 289 4 295 2.70e-37 139
Msa0436570 MtrunA17_Chr4g0061381 29.811 265 167 5 48 300 40 297 5.90e-37 138
Msa0436570 MtrunA17_Chr3g0094171 29.373 303 194 5 5 300 15 304 5.95e-37 138
Msa0436570 MtrunA17_Chr3g0094231 29.804 255 166 6 32 279 29 277 9.07e-37 137
Msa0436570 MtrunA17_Chr7g0224551 29.412 306 185 9 7 300 9 295 1.99e-36 136
Msa0436570 MtrunA17_Chr2g0310371 44.737 152 75 3 10 159 1 145 3.38e-36 127
Msa0436570 MtrunA17_Chr1g0200961 31.164 292 170 10 1 279 2 275 3.70e-36 135
Msa0436570 MtrunA17_Chr5g0445541 57.843 102 40 2 12 113 13 111 4.20e-36 126
Msa0436570 MtrunA17_Chr3g0117321 52.033 123 56 1 38 160 6 125 7.92e-36 125
Msa0436570 MtrunA17_Chr7g0224561 29.085 306 186 9 7 300 9 295 9.01e-36 135
Msa0436570 MtrunA17_Chr7g0258211 30.492 305 200 5 1 298 1 300 2.46e-35 133
Msa0436570 MtrunA17_Chr8g0356001 32.780 241 140 7 3 230 4 235 3.00e-35 133
Msa0436570 MtrunA17_Chr3g0086691 31.718 227 140 4 48 263 41 263 5.07e-35 132
Msa0436570 MtrunA17_Chr1g0160851 32.721 272 156 8 1 260 1 257 1.28e-34 131
Msa0436570 MtrunA17_Chr4g0030701 28.261 276 179 5 40 300 36 307 3.27e-34 130
Msa0436570 MtrunA17_Chr5g0445341 66.265 83 27 1 77 158 1 83 3.95e-34 119
Msa0436570 MtrunA17_Chr4g0030711 29.213 267 169 5 50 300 48 310 4.22e-34 130
Msa0436570 MtrunA17_Chr8g0362701 30.100 299 191 7 14 300 11 303 7.92e-34 129
Msa0436570 MtrunA17_Chr4g0030741 29.870 308 194 9 1 300 30 323 2.30e-33 125
Msa0436570 MtrunA17_Chr4g0057001 28.475 295 193 7 13 300 31 314 2.54e-33 128
Msa0436570 MtrunA17_Chr7g0265611 28.859 298 193 6 14 300 25 314 3.26e-33 127
Msa0436570 MtrunA17_Chr1g0207851 27.473 273 176 5 50 305 49 316 3.61e-33 125
Msa0436570 MtrunA17_Chr5g0431601 65.060 83 28 1 77 159 1 82 7.80e-33 116
Msa0436570 MtrunA17_Chr1g0205361 30.000 270 166 6 1 260 1 257 8.17e-33 126
Msa0436570 MtrunA17_Chr4g0039901 36.098 205 122 3 32 230 28 229 8.85e-33 126
Msa0436570 MtrunA17_Chr4g0046671 30.000 280 174 8 40 302 44 318 1.03e-32 123
Msa0436570 MtrunA17_Chr4g0046691 32.444 225 142 5 42 261 44 263 1.07e-32 122
Msa0436570 MtrunA17_Chr1g0205371 27.027 296 193 8 1 285 1 284 1.29e-32 125
Msa0436570 MtrunA17_Chr3g0086661 30.568 229 143 5 48 265 41 264 3.99e-32 124
Msa0436570 MtrunA17_Chr3g0086651 30.568 229 143 5 48 265 41 264 4.03e-32 124
Msa0436570 MtrunA17_Chr1g0207841 27.612 268 173 4 50 300 49 312 4.37e-32 124
Msa0436570 MtrunA17_Chr4g0052851 33.088 272 151 10 24 284 22 273 4.90e-32 124
Msa0436570 MtrunA17_Chr2g0296651 31.930 285 166 8 15 284 11 282 4.50e-31 121
Msa0436570 MtrunA17_Chr4g0046631 29.682 283 173 10 35 299 41 315 5.63e-31 121
Msa0436570 MtrunA17_Chr8g0339311 31.513 238 147 6 37 260 42 277 9.04e-31 121
Msa0436570 MtrunA17_Chr4g0039391 32.189 233 144 5 63 283 56 286 1.31e-30 120
Msa0436570 MtrunA17_Chr4g0052881 30.556 288 175 7 12 284 6 283 1.69e-30 120
Msa0436570 MtrunA17_Chr1g0176831 30.672 238 140 6 1 227 31 254 1.96e-30 120
Msa0436570 MtrunA17_Chr6g0451751 28.840 319 196 10 5 300 11 321 2.30e-30 120
Msa0436570 MtrunA17_Chr7g0246131 29.851 268 171 7 1 260 1 259 2.59e-30 119
Msa0436570 MtrunA17_Chr2g0314721 29.808 208 137 3 31 232 36 240 3.96e-30 119
Msa0436570 MtrunA17_Chr6g0466941 27.864 323 199 11 1 299 1 313 4.22e-30 119
Msa0436570 MtrunA17_Chr6g0451691 29.688 320 191 10 6 300 15 325 5.23e-30 119
Msa0436570 MtrunA17_Chr5g0401691 30.916 262 159 6 8 259 26 275 7.66e-30 118
Msa0436570 MtrunA17_Chr5g0395321 30.631 222 140 5 8 227 17 226 1.31e-29 117
Msa0436570 MtrunA17_Chr5g0402971 28.276 290 178 9 37 304 37 318 1.69e-29 114
Msa0436570 MtrunA17_Chr4g0053621 29.893 281 171 7 39 302 31 302 2.44e-29 117
Msa0436570 MtrunA17_Chr6g0451801 28.349 321 200 9 5 302 10 323 3.41e-29 114
Msa0436570 MtrunA17_Chr5g0395331 31.455 213 123 6 30 227 27 231 6.62e-29 115
Msa0436570 MtrunA17_Chr8g0362481 29.362 235 154 5 77 300 1 234 6.80e-29 115
Msa0436570 MtrunA17_Chr4g0008101 28.527 319 198 9 5 300 10 321 7.52e-29 115
Msa0436570 MtrunA17_Chr6g0451641 30.597 268 162 8 14 263 14 275 7.73e-29 115
Msa0436570 MtrunA17_Chr4g0017411 34.520 281 149 12 15 284 14 270 9.79e-29 115
Msa0436570 MtrunA17_Chr6g0451781 31.429 280 167 7 42 300 79 354 1.01e-28 115
Msa0436570 MtrunA17_Chr4g0052861 27.241 290 184 7 9 284 6 282 1.70e-27 111
Msa0436570 MtrunA17_Chr6g0466901 26.087 322 205 10 1 299 1 312 6.36e-27 110
Msa0436570 MtrunA17_Chr4g0056951 25.610 246 174 3 63 300 65 309 1.36e-26 109
Msa0436570 MtrunA17_Chr2g0314731 28.571 238 151 6 1 230 1 227 1.43e-26 108
Msa0436570 MtrunA17_Chr6g0451741 28.239 301 184 9 26 300 49 343 2.49e-26 108
Msa0436570 MtrunA17_Chr3g0082701 28.261 322 203 9 3 300 5 322 2.96e-26 108
Msa0436570 MtrunA17_Chr1g0164211 32.057 209 130 4 38 237 30 235 4.91e-26 107
Msa0436570 MtrunA17_Chr2g0296661 28.992 238 150 6 63 284 53 287 6.04e-26 107
Msa0436570 MtrunA17_Chr6g0451681 37.267 161 92 3 14 174 44 195 6.28e-26 107
Msa0436570 MtrunA17_Chr8g0351801 29.699 266 167 8 49 298 44 305 7.21e-26 107
Msa0436570 MtrunA17_Chr5g0430051 43.860 114 57 2 11 120 6 116 7.54e-26 99.4
Msa0436570 MtrunA17_Chr7g0246221 26.974 304 193 9 7 294 5 295 7.59e-26 107
Msa0436570 MtrunA17_Chr5g0395381 32.927 164 102 4 11 169 9 169 2.19e-25 105
Msa0436570 MtrunA17_Chr7g0255531 23.625 309 207 6 7 301 2 295 2.35e-25 105
Msa0436570 MtrunA17_Chr5g0432751 26.224 286 186 7 31 300 25 301 2.73e-25 105
Msa0436570 MtrunA17_Chr4g0046321 27.636 275 174 12 40 300 35 298 2.84e-25 105
Msa0436570 MtrunA17_Chr4g0046331 28.364 275 172 12 40 300 35 298 3.46e-25 105
Msa0436570 MtrunA17_Chr4g0046351 28.364 275 172 12 40 300 35 298 4.42e-25 105
Msa0436570 MtrunA17_Chr8g0339331 25.448 279 188 5 36 300 36 308 1.08e-24 103
Msa0436570 MtrunA17_Chr6g0484771 34.532 139 88 2 77 213 1 138 2.64e-24 96.3
Msa0436570 MtrunA17_Chr8g0346261 28.467 274 166 12 41 301 86 342 3.08e-24 102
Msa0436570 MtrunA17_Chr6g0458561 26.263 297 199 7 19 300 34 325 2.58e-23 99.8
Msa0436570 MtrunA17_Chr7g0246151 29.130 230 139 7 50 265 45 264 1.98e-22 97.1
Msa0436570 MtrunA17_Chr7g0246121 29.279 222 145 5 50 263 45 262 4.91e-22 95.9
Msa0436570 MtrunA17_Chr3g0105751 26.299 308 199 9 10 298 20 318 1.18e-21 94.0
Msa0436570 MtrunA17_Chr1g0210091 28.351 194 127 3 48 231 74 265 1.18e-21 95.1
Msa0436570 MtrunA17_Chr1g0213671 24.549 277 193 7 20 285 17 288 4.28e-21 93.6
Msa0436570 MtrunA17_Chr1g0200951 26.408 284 181 10 33 301 54 324 2.05e-20 91.3
Msa0436570 MtrunA17_Chr7g0246181 25.909 220 150 4 50 260 45 260 1.06e-19 89.4
Msa0436570 MtrunA17_Chr5g0419451 28.364 275 165 12 41 301 62 318 3.09e-19 87.8
Msa0436570 MtrunA17_Chr2g0314771 27.500 160 110 2 77 230 1 160 3.92e-19 82.8
Msa0436570 MtrunA17_Chr3g0107561 28.395 162 112 1 5 166 15 172 7.14e-19 85.5
Msa0436570 MtrunA17_Chr1g0197871 26.087 230 157 4 5 230 6 226 1.79e-18 85.5
Msa0436570 MtrunA17_Chr1g0197881 24.000 225 163 4 11 230 4 225 8.92e-18 83.6
Msa0436570 MtrunA17_Chr1g0197891 23.729 236 164 5 1 230 1 226 1.20e-17 83.2
Msa0436570 MtrunA17_Chr1g0198191 28.659 164 107 3 8 170 23 177 1.93e-17 82.4
Msa0436570 MtrunA17_Chr1g0197851 23.894 226 163 4 11 230 4 226 2.27e-17 82.4
Msa0436570 MtrunA17_Chr5g0431591 33.333 117 75 2 186 300 1 116 4.77e-17 80.1
Msa0436570 MtrunA17_Chr8g0377341 25.784 287 181 11 26 301 62 327 6.56e-17 80.9
Msa0436570 MtrunA17_Chr8g0370651 22.222 315 215 7 12 300 10 320 3.30e-16 79.0
Msa0436570 MtrunA17_Chr3g0107611 21.895 306 210 7 16 298 27 326 1.63e-15 77.0
Msa0436570 MtrunA17_Chr1g0176861 41.000 100 48 3 1 99 5 94 1.66e-15 70.9
Msa0436570 MtrunA17_Chr5g0413911 32.639 144 93 2 32 171 32 175 2.77e-15 76.3
Msa0436570 MtrunA17_Chr4g0074581 29.448 163 114 1 9 170 39 201 3.24e-15 75.9
Msa0436570 MtrunA17_Chr8g0370641 21.711 304 215 6 16 300 17 316 4.42e-15 75.5
Msa0436570 MtrunA17_Chr3g0101641 39.474 76 46 0 186 261 1 76 2.32e-14 67.8
Msa0436570 MtrunA17_Chr2g0280001 30.370 135 93 1 39 172 63 197 3.96e-13 67.4
Msa0436570 MtrunA17_Chr6g0451761 23.828 256 163 8 42 288 46 278 4.39e-13 68.2
Msa0436570 MtrunA17_Chr5g0446111 61.224 49 19 0 69 117 4 52 6.09e-13 62.8
Msa0436570 MtrunA17_Chr5g0445641 39.744 78 47 0 143 220 22 99 2.88e-12 62.8
Msa0436570 MtrunA17_Chr3g0107541 30.682 88 61 0 79 166 90 177 3.95e-12 66.6
Msa0436570 MtrunA17_Chr2g0280071 25.455 220 159 3 39 253 63 282 4.22e-12 66.6
Msa0436570 MtrunA17_Chr2g0334021 27.755 245 156 7 35 261 29 270 1.12e-11 65.1
Msa0436570 MtrunA17_Chr2g0280051 28.655 171 115 4 39 203 73 242 1.31e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436570 AT3G48280.1 36.986 292 173 4 8 299 4 284 2.15e-58 195
Msa0436570 AT3G48320.1 36.913 298 176 4 3 300 1 286 4.27e-58 194
Msa0436570 AT3G26310.1 35.932 295 171 7 15 300 9 294 2.29e-56 190
Msa0436570 AT3G48310.1 37.165 261 157 2 40 300 33 286 1.29e-55 187
Msa0436570 AT5G25130.1 39.080 261 143 6 7 260 2 253 4.00e-54 184
Msa0436570 AT4G13310.2 36.531 271 157 7 39 301 32 295 4.28e-54 181
Msa0436570 AT5G25120.1 36.513 304 171 8 7 301 2 292 5.31e-54 184
Msa0436570 AT3G26300.1 35.906 298 170 9 14 300 8 295 2.18e-53 182
Msa0436570 AT5G24950.1 34.831 267 163 4 39 300 32 292 3.30e-53 181
Msa0436570 AT3G48270.1 35.769 260 160 2 41 300 33 285 3.48e-53 181
Msa0436570 AT4G13310.1 36.531 271 157 7 39 301 32 295 5.23e-53 181
Msa0436570 AT3G26320.1 37.993 279 158 7 31 300 23 295 3.25e-52 179
Msa0436570 AT5G25140.1 36.424 302 172 8 7 300 2 291 7.75e-52 178
Msa0436570 AT5G25180.1 34.667 300 175 7 9 300 5 291 1.29e-51 177
Msa0436570 AT4G13290.1 34.815 270 155 6 39 301 33 288 2.31e-50 174
Msa0436570 AT3G48290.1 34.559 272 171 2 29 300 23 287 2.53e-50 174
Msa0436570 AT3G48290.2 34.672 274 172 2 29 302 23 289 2.80e-50 174
Msa0436570 AT5G57260.1 37.184 277 150 8 38 300 29 295 1.27e-49 172
Msa0436570 AT5G24960.2 32.959 267 168 4 39 300 33 293 7.66e-49 167
Msa0436570 AT3G48300.1 34.231 260 164 2 41 300 31 283 9.33e-49 169
Msa0436570 AT3G48300.2 34.231 260 164 2 41 300 33 285 9.67e-49 169
Msa0436570 AT3G26330.1 36.264 273 159 7 37 300 29 295 1.05e-48 169
Msa0436570 AT2G30770.1 35.075 268 160 5 39 300 33 292 1.20e-48 169
Msa0436570 AT2G30750.1 35.821 268 158 5 39 300 33 292 2.88e-48 168
Msa0436570 AT5G24960.1 32.281 285 175 5 21 300 22 293 5.43e-48 167
Msa0436570 AT4G31500.1 35.316 269 165 5 38 300 28 293 6.64e-48 167
Msa0436570 AT1G11610.1 34.328 268 162 5 39 300 33 292 1.29e-47 167
Msa0436570 AT3G26280.2 35.179 307 165 11 16 305 32 321 1.56e-47 167
Msa0436570 AT1G11610.2 33.955 268 163 5 39 300 33 292 1.86e-47 166
Msa0436570 AT3G26280.1 35.179 307 165 11 16 305 15 304 2.07e-47 166
Msa0436570 AT5G42590.1 31.650 297 187 5 10 301 9 294 3.28e-47 166
Msa0436570 AT2G24180.1 38.095 273 151 8 39 300 36 301 1.02e-46 164
Msa0436570 AT1G13110.1 35.145 276 160 8 38 300 31 300 3.62e-46 163
Msa0436570 AT3G26290.1 35.315 286 157 10 31 300 22 295 4.09e-46 162
Msa0436570 AT3G26290.2 34.982 283 162 9 31 300 35 308 6.60e-46 162
Msa0436570 AT2G02580.1 35.855 304 176 9 6 300 2 295 3.96e-45 160
Msa0436570 AT3G44250.1 39.394 231 129 3 38 260 27 254 5.89e-45 159
Msa0436570 AT5G06900.1 35.273 275 163 6 39 304 34 302 6.83e-45 159
Msa0436570 AT1G13080.1 35.235 298 173 8 17 300 7 298 1.06e-44 159
Msa0436570 AT4G20240.2 35.433 254 153 5 38 286 32 279 1.46e-44 156
Msa0436570 AT1G13090.1 33.453 278 166 7 38 303 27 297 2.50e-44 153
Msa0436570 AT4G36220.1 36.744 215 130 4 47 260 48 257 4.42e-44 157
Msa0436570 AT4G20240.1 35.433 254 153 5 38 286 32 279 6.07e-44 156
Msa0436570 AT5G07990.1 31.169 308 186 10 6 300 2 296 8.20e-44 157
Msa0436570 AT3G26180.1 35.606 264 151 6 10 260 1 258 2.11e-43 155
Msa0436570 AT3G26170.1 32.886 298 177 7 10 291 1 291 6.77e-43 154
Msa0436570 AT5G04330.1 35.036 274 160 7 40 300 33 301 3.27e-42 152
Msa0436570 AT1G13090.2 33.455 275 164 7 38 300 27 294 4.92e-42 152
Msa0436570 AT3G26190.1 34.909 275 161 8 38 300 27 295 7.20e-42 151
Msa0436570 AT3G53280.1 33.333 273 166 8 38 300 27 293 7.39e-42 151
Msa0436570 AT3G26200.1 36.559 279 151 9 38 300 27 295 7.77e-42 151
Msa0436570 AT3G26160.1 31.046 306 188 9 10 300 1 298 2.13e-39 145
Msa0436570 AT3G26270.1 33.452 281 165 9 25 291 20 292 6.66e-39 143
Msa0436570 AT3G26150.1 31.475 305 188 8 10 300 1 298 7.24e-38 140
Msa0436570 AT3G26210.1 32.824 262 163 6 48 300 40 297 1.08e-37 140
Msa0436570 AT4G13770.1 30.303 297 195 6 10 300 4 294 4.42e-37 138
Msa0436570 AT3G26220.1 31.731 312 183 9 11 304 3 302 4.98e-37 138
Msa0436570 AT3G26230.1 31.511 311 183 9 12 304 1 299 1.10e-35 134
Msa0436570 AT3G53300.1 33.962 265 157 7 38 289 27 286 4.17e-35 133
Msa0436570 AT4G12300.1 31.734 271 172 6 39 300 42 308 2.41e-34 131
Msa0436570 AT3G26830.1 30.435 299 193 6 12 300 1 294 8.52e-34 129
Msa0436570 AT2G42250.1 30.195 308 203 6 1 300 1 304 1.34e-33 129
Msa0436570 AT4G20235.1 32.157 255 143 7 10 260 6 234 1.93e-33 125
Msa0436570 AT1G13100.1 33.209 268 154 10 48 300 37 294 3.02e-33 128
Msa0436570 AT4G12320.1 31.136 273 173 7 39 300 42 310 4.46e-33 127
Msa0436570 AT5G67310.1 30.070 286 177 9 8 284 20 291 5.22e-33 127
Msa0436570 AT4G37320.1 29.412 289 176 10 10 284 6 280 1.92e-32 125
Msa0436570 AT1G01280.1 30.667 225 141 4 48 261 41 261 3.72e-32 125
Msa0436570 AT5G06905.1 27.852 298 195 7 14 300 7 295 1.41e-30 120
Msa0436570 AT3G20110.1 30.508 295 192 4 14 299 11 301 4.53e-30 119
Msa0436570 AT3G52970.1 31.140 228 139 6 8 227 13 230 7.62e-30 119
Msa0436570 AT5G10610.1 32.384 281 172 8 15 284 6 279 1.06e-29 118
Msa0436570 AT2G45560.2 25.566 309 205 9 1 293 1 300 1.27e-29 115
Msa0436570 AT4G31940.1 29.740 269 165 6 40 287 35 300 2.71e-29 117
Msa0436570 AT2G23220.1 32.184 261 153 8 38 284 45 295 4.77e-29 116
Msa0436570 AT4G22710.1 28.352 261 175 5 48 300 62 318 1.35e-28 115
Msa0436570 AT2G45560.1 25.566 309 205 9 1 293 1 300 2.10e-28 114
Msa0436570 AT2G45560.3 27.500 240 153 7 1 227 1 232 2.93e-28 109
Msa0436570 AT3G52970.2 29.339 242 139 6 8 227 13 244 3.47e-28 114
Msa0436570 AT2G40890.1 25.329 304 203 7 12 301 1 294 5.03e-28 113
Msa0436570 AT4G31970.1 28.947 266 166 5 40 285 35 297 8.67e-28 113
Msa0436570 AT4G22690.1 27.969 261 176 5 48 300 93 349 9.85e-28 113
Msa0436570 AT3G20140.1 27.113 284 193 5 25 300 28 305 1.30e-27 112
Msa0436570 AT4G12310.1 29.730 259 164 6 59 300 55 312 1.79e-27 112
Msa0436570 AT2G23190.1 29.260 311 188 11 7 302 47 340 3.04e-27 111
Msa0436570 AT3G20940.1 26.056 284 197 5 25 300 28 306 3.29e-27 111
Msa0436570 AT4G37430.1 28.328 293 178 10 8 283 2 279 3.84e-27 111
Msa0436570 AT2G45550.1 24.430 307 212 9 1 295 1 299 9.23e-27 110
Msa0436570 AT1G33720.1 26.970 330 206 9 1 302 1 323 1.11e-26 109
Msa0436570 AT4G37330.1 29.965 287 171 10 10 283 7 276 1.34e-26 109
Msa0436570 AT5G10600.1 29.801 302 171 11 16 284 2 295 1.40e-26 109
Msa0436570 AT4G37370.1 29.592 294 174 10 7 284 3 279 2.18e-26 108
Msa0436570 AT2G25160.2 28.754 313 186 12 8 297 6 304 4.10e-26 107
Msa0436570 AT4G15360.1 26.645 304 211 5 1 298 6 303 6.66e-26 107
Msa0436570 AT2G25160.1 28.754 313 186 12 8 297 6 304 9.25e-26 107
Msa0436570 AT4G37340.1 28.571 308 183 12 11 300 6 294 1.18e-25 107
Msa0436570 AT1G74110.1 27.414 321 195 12 7 301 26 334 1.25e-25 107
Msa0436570 AT5G44620.1 25.869 259 172 5 59 300 57 312 1.38e-25 106
Msa0436570 AT4G37310.1 30.864 243 151 7 38 266 29 268 1.76e-25 106
Msa0436570 AT3G32047.1 28.571 308 200 7 1 299 7 303 4.27e-25 105
Msa0436570 AT3G61040.2 27.675 271 177 8 36 297 30 290 4.74e-25 103
Msa0436570 AT3G25180.2 28.571 287 180 9 7 281 14 287 4.91e-25 103
Msa0436570 AT1G74550.1 28.070 285 177 8 26 301 16 281 5.09e-25 105
Msa0436570 AT5G57220.1 27.547 265 173 8 10 264 5 260 5.75e-25 104
Msa0436570 AT2G14100.1 29.167 264 161 6 50 299 54 305 7.48e-25 104
Msa0436570 AT3G61040.1 27.675 271 177 8 36 297 30 290 1.40e-24 103
Msa0436570 AT3G20090.2 28.205 312 197 7 1 298 7 305 2.09e-24 103
Msa0436570 AT3G25180.1 28.571 287 180 9 7 281 14 287 2.63e-24 103
Msa0436570 AT4G15330.1 25.839 298 199 5 9 300 20 301 2.98e-24 102
Msa0436570 AT4G37410.1 27.875 287 183 9 9 284 4 277 4.89e-24 102
Msa0436570 AT2G45570.1 24.715 263 173 8 48 293 47 301 1.70e-23 100
Msa0436570 AT1G50520.1 28.710 310 204 8 1 300 6 308 1.72e-23 100
Msa0436570 AT4G37400.1 27.155 232 151 6 63 284 52 275 1.95e-23 100
Msa0436570 AT5G09970.1 27.046 281 183 9 33 301 62 332 2.80e-23 100
Msa0436570 AT5G42580.1 26.141 241 166 3 62 300 60 290 3.90e-23 99.8
Msa0436570 AT3G20950.1 24.759 311 213 9 1 299 7 308 4.71e-23 99.4
Msa0436570 AT3G28740.1 29.845 258 161 7 39 284 39 288 5.90e-23 99.4
Msa0436570 AT3G53290.1 31.897 232 133 8 95 309 11 234 1.64e-22 97.1
Msa0436570 AT4G12330.1 24.710 259 174 6 59 300 57 311 1.68e-22 97.8
Msa0436570 AT2G46660.1 26.296 270 174 10 41 301 72 325 2.15e-22 97.8
Msa0436570 AT5G36220.1 29.221 308 176 14 16 302 16 302 3.33e-22 97.1
Msa0436570 AT2G05180.1 28.405 257 171 6 50 298 52 303 6.60e-22 95.9
Msa0436570 AT3G53305.1 39.200 125 74 1 77 199 1 125 7.83e-22 94.4
Msa0436570 AT3G20130.1 26.275 255 178 4 50 298 53 303 1.33e-21 95.1
Msa0436570 AT1G50560.1 26.667 270 165 7 50 300 54 309 1.63e-21 95.1
Msa0436570 AT4G37360.1 28.996 269 157 10 9 258 4 257 2.35e-21 94.4
Msa0436570 AT5G35715.1 28.000 225 149 5 77 289 1 224 4.50e-21 93.2
Msa0436570 AT4G15350.1 26.923 260 174 7 50 299 45 298 5.18e-21 93.6
Msa0436570 AT3G26180.2 41.379 116 65 1 10 125 1 113 5.43e-21 92.4
Msa0436570 AT3G20100.1 26.797 306 212 6 2 300 5 305 4.12e-20 90.9
Msa0436570 AT3G61880.1 28.315 279 161 14 41 301 68 325 4.16e-20 90.9
Msa0436570 AT3G61880.2 28.315 279 161 14 41 301 68 325 4.17e-20 90.9
Msa0436570 AT3G10560.1 31.977 172 111 3 1 170 11 178 7.54e-20 90.1
Msa0436570 AT3G20120.4 28.125 256 172 6 50 298 52 302 6.62e-19 87.4
Msa0436570 AT1G13710.1 26.154 260 163 11 59 301 66 313 1.17e-18 86.7
Msa0436570 AT1G74540.1 31.638 177 102 4 39 204 27 195 1.58e-18 86.3
Msa0436570 AT2G27000.1 27.308 260 172 7 50 299 50 302 1.64e-18 86.3
Msa0436570 AT5G47990.1 27.632 304 196 9 13 300 11 306 2.92e-18 85.5
Msa0436570 AT4G31950.1 24.834 302 186 9 7 287 7 288 4.25e-18 85.1
Msa0436570 AT5G04630.1 26.007 273 170 9 10 261 2 263 4.34e-18 84.7
Msa0436570 AT3G20080.2 26.429 280 191 7 28 298 31 304 5.23e-18 84.7
Msa0436570 AT3G20080.1 26.429 280 191 7 28 298 31 304 5.23e-18 84.7
Msa0436570 AT3G20960.2 23.729 236 173 3 69 298 69 303 6.22e-18 84.3
Msa0436570 AT1G28430.1 28.053 303 194 10 7 300 16 303 7.29e-18 84.3
Msa0436570 AT2G45580.3 30.464 151 100 2 49 197 48 195 3.45e-17 81.6
Msa0436570 AT2G45580.1 30.464 151 100 2 49 197 48 195 4.88e-17 81.6
Msa0436570 AT2G30490.1 25.095 263 171 7 55 300 47 300 4.97e-17 81.6
Msa0436570 AT5G05260.1 33.529 170 94 5 14 170 9 172 1.00e-16 80.9
Msa0436570 AT5G05260.2 33.333 171 95 5 14 171 9 173 1.11e-16 80.9
Msa0436570 AT1G16410.2 23.246 228 164 4 19 237 25 250 1.74e-16 79.7
Msa0436570 AT1G16410.1 23.246 228 164 4 19 237 25 250 3.18e-16 79.3
Msa0436570 AT3G03470.1 26.756 299 189 8 5 293 4 282 1.97e-15 77.0
Msa0436570 AT1G16400.1 22.892 249 178 5 1 237 3 249 1.98e-15 77.0
Msa0436570 AT4G15380.1 24.576 236 170 4 69 300 70 301 2.22e-15 77.0
Msa0436570 AT2G22330.1 25.238 210 144 4 18 225 39 237 1.12e-13 71.6
Msa0436570 AT2G22330.2 25.238 210 144 4 18 225 62 260 1.23e-13 71.6
Msa0436570 AT1G58260.1 22.222 243 171 6 9 240 10 245 3.89e-13 70.1
Msa0436570 AT1G11600.1 28.358 134 95 1 38 170 34 167 3.04e-12 67.4
Msa0436570 AT5G35917.1 31.034 145 89 4 32 171 37 175 4.50e-12 67.0
Msa0436570 AT5G61320.1 25.229 218 155 6 50 261 42 257 5.17e-12 66.6
Msa0436570 AT4G39950.1 27.950 161 115 1 6 165 22 182 9.16e-12 65.9
Msa0436570 AT4G39950.2 27.950 161 115 1 6 165 62 222 1.12e-11 65.9
Msa0436570 AT3G10570.1 27.273 121 87 1 51 170 55 175 1.49e-11 65.5
Msa0436570 AT1G79370.1 23.387 248 167 5 10 234 8 255 2.11e-11 65.1
Msa0436570 AT2G12190.1 24.046 262 187 5 39 290 32 291 2.25e-11 64.7

Find 57 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAACTTCTTAGTGCTAAA+AGG 0.156998 3_2:-90163867 Msa0436570:CDS
ATGGCCCTGGTGGAAGTTTA+TGG 0.181679 3_2:+90164187 None:intergenic
GAAAGTCAAGGTGAGAAATT+TGG 0.193659 3_2:-90164211 Msa0436570:CDS
TACTAGGTTGAAAGCTAAAT+TGG 0.205393 3_2:-90163590 Msa0436570:CDS
TTGCTCCATATGGTGATTAT+TGG 0.212477 3_2:-90163915 Msa0436570:CDS
ATTATTTCTTTGGCTATATC+AGG 0.266239 3_2:+90164021 None:intergenic
TTCTACCTCATCTTCTCTAA+TGG 0.324917 3_2:+90163828 None:intergenic
ACCTCTTATGCATCTTCAAC+TGG 0.328958 3_2:-90164073 Msa0436570:CDS
TTGACATTGTTATCTGTGAT+TGG 0.329086 3_2:+90163427 None:intergenic
TACTAAAATAGCTTTCTCTT+TGG 0.330023 3_2:-90163758 Msa0436570:CDS
TGATGCAAGTTTCCTATTAG+AGG 0.344056 3_2:+90164156 None:intergenic
TGCAATATCTGTTGATTCAT+AGG 0.355741 3_2:+90163939 None:intergenic
GATATTGCATTTGCTCCATA+TGG 0.357338 3_2:-90163925 Msa0436570:CDS
CCATGGAAGCTTCCTCTAAT+AGG 0.361382 3_2:-90164168 Msa0436570:CDS
AACCTAGTAATTAGATGAAT+AGG 0.370566 3_2:+90163604 None:intergenic
TGAGGAAATGATCAGGAATA+AGG 0.375406 3_2:+90164275 None:intergenic
ACAATGTCAAAGCCGTCATA+TGG 0.379414 3_2:-90163414 Msa0436570:CDS
GAGATAGATTTCCAAGTGTA+TGG 0.380798 3_2:+90164106 None:intergenic
TCAAACCATGCCGGCATTCA+AGG 0.400717 3_2:-90163505 Msa0436570:CDS
TGACATTGTTATCTGTGATT+GGG 0.406245 3_2:+90163428 None:intergenic
AAAGTCAAGGTGAGAAATTT+GGG 0.406398 3_2:-90164210 Msa0436570:CDS
GGAGAATATGCAAAAGAAGT+TGG 0.425179 3_2:-90163569 Msa0436570:CDS
AGAACTTCTTAGTGCTAAAA+GGG 0.440041 3_2:-90163866 Msa0436570:CDS
AGATGAATAGGTTTAAATGA+AGG 0.449231 3_2:+90163616 None:intergenic
AACCTATTCATCTAATTACT+AGG 0.449566 3_2:-90163606 Msa0436570:CDS
AAGCTTATACAATCTATTCA+AGG 0.450095 3_2:-90163805 Msa0436570:CDS
AGATGAATGAGGAAATGATC+AGG 0.460462 3_2:+90164268 None:intergenic
CCCAGTTGAAGATGCATAAG+AGG 0.467270 3_2:+90164072 None:intergenic
TTAGTTACAAGGGCAGCGTT+TGG 0.474877 3_2:-90163727 Msa0436570:CDS
CCTATTAGAGGAAGCTTCCA+TGG 0.481130 3_2:+90164168 None:intergenic
GATGAATAGGTTTAAATGAA+GGG 0.485300 3_2:+90163617 None:intergenic
TGGTAAGCACCTTAGTTACA+AGG 0.495911 3_2:-90163738 Msa0436570:CDS
TGTCTCCAATAATCACCATA+TGG 0.501068 3_2:+90163910 None:intergenic
AAACGCTGCCCTTGTAACTA+AGG 0.503281 3_2:+90163729 None:intergenic
AACTTGCATCAACTAGCATT+AGG 0.509938 3_2:-90164144 Msa0436570:CDS
AGAGGAAGCTTCCATGGCCC+TGG 0.512385 3_2:+90164174 None:intergenic
ATAAACTTCCACCAGGGCCA+TGG 0.516122 3_2:-90164185 Msa0436570:CDS
GGTAGCAGATTTGAATTCCA+TGG 0.523164 3_2:+90164296 None:intergenic
CAATGTCAAAGCCGTCATAT+GGG 0.529916 3_2:-90163413 Msa0436570:CDS
TTCTTCCATTAGAGAAGATG+AGG 0.568950 3_2:-90163833 Msa0436570:CDS
AAGTAAGAAGAAGATGAATG+AGG 0.576190 3_2:+90164257 None:intergenic
TTTCACCTTGAATGCCGGCA+TGG 0.576533 3_2:+90163500 None:intergenic
TTGGGCCATAAACTTCCACC+AGG 0.579315 3_2:-90164192 Msa0436570:CDS
CCTCTTATGCATCTTCAACT+GGG 0.581249 3_2:-90164072 Msa0436570:CDS
TCACTTCCACACCATACACT+TGG 0.588929 3_2:-90164117 Msa0436570:CDS
GGAAGCTTCCATGGCCCTGG+TGG 0.591888 3_2:+90164177 None:intergenic
CAATCAAATTCAAACCATGC+CGG 0.598143 3_2:-90163514 Msa0436570:CDS
ATGATAACTAACCCATATGA+CGG 0.607587 3_2:+90163402 None:intergenic
GTGATTATTGGAGACAGATG+AGG 0.610195 3_2:-90163903 Msa0436570:CDS
ACTGGGTGAAATTTCTGCAG+TGG 0.612358 3_2:-90164055 Msa0436570:CDS
TTGCATCAACTAGCATTAGG+AGG 0.615760 3_2:-90164141 Msa0436570:CDS
GGTAAGCACCTTAGTTACAA+GGG 0.635339 3_2:-90163737 Msa0436570:CDS
AGATTTCCAAGTGTATGGTG+TGG 0.641771 3_2:+90164111 None:intergenic
AATTTATAAACAGAAAGTCA+AGG 0.665195 3_2:-90164223 Msa0436570:CDS
GAAGCAGTGGAAATGTGTGG+TGG 0.711407 3_2:-90163661 Msa0436570:CDS
TGGGCCATAAACTTCCACCA+GGG 0.734679 3_2:-90164191 Msa0436570:CDS
AAGGAAGCAGTGGAAATGTG+TGG 0.736423 3_2:-90163664 Msa0436570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAAACAGAAAGTCA+AGG - chr3_2:90163458-90163477 Msa0436570:CDS 20.0%
!!! ATGTGTTTTCATTATTTCTT+TGG + chr3_2:90163673-90163692 None:intergenic 20.0%
!! AATTTATAAACAGAAAGTCA+AGG - chr3_2:90163458-90163477 Msa0436570:CDS 20.0%
!!! ATGTGTTTTCATTATTTCTT+TGG + chr3_2:90163673-90163692 None:intergenic 20.0%
! GGAAATCTATCTCAAAAATA+TGG - chr3_2:90163585-90163604 Msa0436570:CDS 25.0%
!! ATTATTTCTTTGGCTATATC+AGG + chr3_2:90163663-90163682 None:intergenic 25.0%
!! ATGATCTTTCTTTTGTTCAT+AGG - chr3_2:90163691-90163710 Msa0436570:CDS 25.0%
!! GATTCATAGGATAGTATTTT+AGG + chr3_2:90163732-90163751 None:intergenic 25.0%
! AAGCTTATACAATCTATTCA+AGG - chr3_2:90163876-90163895 Msa0436570:CDS 25.0%
!!! GCTATTTTAGTAATATCAAG+TGG + chr3_2:90163915-90163934 None:intergenic 25.0%
! TACTAAAATAGCTTTCTCTT+TGG - chr3_2:90163923-90163942 Msa0436570:CDS 25.0%
!!! TGAACTTTTGTTTTTGCTTA+AGG - chr3_2:90163998-90164017 Msa0436570:CDS 25.0%
! GATGAATAGGTTTAAATGAA+GGG + chr3_2:90164067-90164086 None:intergenic 25.0%
! AGATGAATAGGTTTAAATGA+AGG + chr3_2:90164068-90164087 None:intergenic 25.0%
! AACCTATTCATCTAATTACT+AGG - chr3_2:90164075-90164094 Msa0436570:CDS 25.0%
! AACCTAGTAATTAGATGAAT+AGG + chr3_2:90164080-90164099 None:intergenic 25.0%
! GGAAATCTATCTCAAAAATA+TGG - chr3_2:90163585-90163604 Msa0436570:CDS 25.0%
!! ATTATTTCTTTGGCTATATC+AGG + chr3_2:90163663-90163682 None:intergenic 25.0%
!! ATGATCTTTCTTTTGTTCAT+AGG - chr3_2:90163691-90163710 Msa0436570:CDS 25.0%
!! GATTCATAGGATAGTATTTT+AGG + chr3_2:90163732-90163751 None:intergenic 25.0%
! AAGCTTATACAATCTATTCA+AGG - chr3_2:90163876-90163895 Msa0436570:CDS 25.0%
!!! GCTATTTTAGTAATATCAAG+TGG + chr3_2:90163915-90163934 None:intergenic 25.0%
! TACTAAAATAGCTTTCTCTT+TGG - chr3_2:90163923-90163942 Msa0436570:CDS 25.0%
!!! TGAACTTTTGTTTTTGCTTA+AGG - chr3_2:90163998-90164017 Msa0436570:CDS 25.0%
! GATGAATAGGTTTAAATGAA+GGG + chr3_2:90164067-90164086 None:intergenic 25.0%
! AGATGAATAGGTTTAAATGA+AGG + chr3_2:90164068-90164087 None:intergenic 25.0%
! AACCTATTCATCTAATTACT+AGG - chr3_2:90164075-90164094 Msa0436570:CDS 25.0%
! AACCTAGTAATTAGATGAAT+AGG + chr3_2:90164080-90164099 None:intergenic 25.0%
AAGTAAGAAGAAGATGAATG+AGG + chr3_2:90163427-90163446 None:intergenic 30.0%
AAAGTCAAGGTGAGAAATTT+GGG - chr3_2:90163471-90163490 Msa0436570:CDS 30.0%
!! TGCAATATCTGTTGATTCAT+AGG + chr3_2:90163745-90163764 None:intergenic 30.0%
AGAACTTCTTAGTGCTAAAA+GGG - chr3_2:90163815-90163834 Msa0436570:CDS 30.0%
! TACTAGGTTGAAAGCTAAAT+TGG - chr3_2:90164091-90164110 Msa0436570:CDS 30.0%
TGACATTGTTATCTGTGATT+GGG + chr3_2:90164256-90164275 None:intergenic 30.0%
TTGACATTGTTATCTGTGAT+TGG + chr3_2:90164257-90164276 None:intergenic 30.0%
ATGATAACTAACCCATATGA+CGG + chr3_2:90164282-90164301 None:intergenic 30.0%
AAGTAAGAAGAAGATGAATG+AGG + chr3_2:90163427-90163446 None:intergenic 30.0%
AAAGTCAAGGTGAGAAATTT+GGG - chr3_2:90163471-90163490 Msa0436570:CDS 30.0%
!! TGCAATATCTGTTGATTCAT+AGG + chr3_2:90163745-90163764 None:intergenic 30.0%
AGAACTTCTTAGTGCTAAAA+GGG - chr3_2:90163815-90163834 Msa0436570:CDS 30.0%
! TACTAGGTTGAAAGCTAAAT+TGG - chr3_2:90164091-90164110 Msa0436570:CDS 30.0%
TGACATTGTTATCTGTGATT+GGG + chr3_2:90164256-90164275 None:intergenic 30.0%
TTGACATTGTTATCTGTGAT+TGG + chr3_2:90164257-90164276 None:intergenic 30.0%
ATGATAACTAACCCATATGA+CGG + chr3_2:90164282-90164301 None:intergenic 30.0%
TGAGGAAATGATCAGGAATA+AGG + chr3_2:90163409-90163428 None:intergenic 35.0%
AGATGAATGAGGAAATGATC+AGG + chr3_2:90163416-90163435 None:intergenic 35.0%
GAAAGTCAAGGTGAGAAATT+TGG - chr3_2:90163470-90163489 Msa0436570:CDS 35.0%
TGATGCAAGTTTCCTATTAG+AGG + chr3_2:90163528-90163547 None:intergenic 35.0%
AACTTGCATCAACTAGCATT+AGG - chr3_2:90163537-90163556 Msa0436570:CDS 35.0%
GAGATAGATTTCCAAGTGTA+TGG + chr3_2:90163578-90163597 None:intergenic 35.0%
!!! AGGATAGTATTTTAGGACAG+AGG + chr3_2:90163725-90163744 None:intergenic 35.0%
GATATTGCATTTGCTCCATA+TGG - chr3_2:90163756-90163775 Msa0436570:CDS 35.0%
TTGCTCCATATGGTGATTAT+TGG - chr3_2:90163766-90163785 Msa0436570:CDS 35.0%
TGTCTCCAATAATCACCATA+TGG + chr3_2:90163774-90163793 None:intergenic 35.0%
CAGAACTTCTTAGTGCTAAA+AGG - chr3_2:90163814-90163833 Msa0436570:CDS 35.0%
TTCTTCCATTAGAGAAGATG+AGG - chr3_2:90163848-90163867 Msa0436570:CDS 35.0%
TTCTACCTCATCTTCTCTAA+TGG + chr3_2:90163856-90163875 None:intergenic 35.0%
GGAGAATATGCAAAAGAAGT+TGG - chr3_2:90164112-90164131 Msa0436570:CDS 35.0%
CAATCAAATTCAAACCATGC+CGG - chr3_2:90164167-90164186 Msa0436570:CDS 35.0%
! TAGATTTTCACCTTGAATGC+CGG + chr3_2:90164189-90164208 None:intergenic 35.0%
TGAGGAAATGATCAGGAATA+AGG + chr3_2:90163409-90163428 None:intergenic 35.0%
AGATGAATGAGGAAATGATC+AGG + chr3_2:90163416-90163435 None:intergenic 35.0%
GAAAGTCAAGGTGAGAAATT+TGG - chr3_2:90163470-90163489 Msa0436570:CDS 35.0%
TGATGCAAGTTTCCTATTAG+AGG + chr3_2:90163528-90163547 None:intergenic 35.0%
AACTTGCATCAACTAGCATT+AGG - chr3_2:90163537-90163556 Msa0436570:CDS 35.0%
GAGATAGATTTCCAAGTGTA+TGG + chr3_2:90163578-90163597 None:intergenic 35.0%
!!! AGGATAGTATTTTAGGACAG+AGG + chr3_2:90163725-90163744 None:intergenic 35.0%
GATATTGCATTTGCTCCATA+TGG - chr3_2:90163756-90163775 Msa0436570:CDS 35.0%
TTGCTCCATATGGTGATTAT+TGG - chr3_2:90163766-90163785 Msa0436570:CDS 35.0%
TGTCTCCAATAATCACCATA+TGG + chr3_2:90163774-90163793 None:intergenic 35.0%
CAGAACTTCTTAGTGCTAAA+AGG - chr3_2:90163814-90163833 Msa0436570:CDS 35.0%
TTCTTCCATTAGAGAAGATG+AGG - chr3_2:90163848-90163867 Msa0436570:CDS 35.0%
TTCTACCTCATCTTCTCTAA+TGG + chr3_2:90163856-90163875 None:intergenic 35.0%
GGAGAATATGCAAAAGAAGT+TGG - chr3_2:90164112-90164131 Msa0436570:CDS 35.0%
CAATCAAATTCAAACCATGC+CGG - chr3_2:90164167-90164186 Msa0436570:CDS 35.0%
! TAGATTTTCACCTTGAATGC+CGG + chr3_2:90164189-90164208 None:intergenic 35.0%
TTGCATCAACTAGCATTAGG+AGG - chr3_2:90163540-90163559 Msa0436570:CDS 40.0%
AGATTTCCAAGTGTATGGTG+TGG + chr3_2:90163573-90163592 None:intergenic 40.0%
ACCTCTTATGCATCTTCAAC+TGG - chr3_2:90163608-90163627 Msa0436570:CDS 40.0%
CCTCTTATGCATCTTCAACT+GGG - chr3_2:90163609-90163628 Msa0436570:CDS 40.0%
!!! ATTTTAGGACAGAGGAGTTC+TGG + chr3_2:90163717-90163736 None:intergenic 40.0%
GTGATTATTGGAGACAGATG+AGG - chr3_2:90163778-90163797 Msa0436570:CDS 40.0%
TGGTAAGCACCTTAGTTACA+AGG - chr3_2:90163943-90163962 Msa0436570:CDS 40.0%
GGTAAGCACCTTAGTTACAA+GGG - chr3_2:90163944-90163963 Msa0436570:CDS 40.0%
! GTTTTTGCTTAAGGAAGCAG+TGG - chr3_2:90164007-90164026 Msa0436570:CDS 40.0%
ACAATGTCAAAGCCGTCATA+TGG - chr3_2:90164267-90164286 Msa0436570:CDS 40.0%
CAATGTCAAAGCCGTCATAT+GGG - chr3_2:90164268-90164287 Msa0436570:CDS 40.0%
TTGCATCAACTAGCATTAGG+AGG - chr3_2:90163540-90163559 Msa0436570:CDS 40.0%
AGATTTCCAAGTGTATGGTG+TGG + chr3_2:90163573-90163592 None:intergenic 40.0%
ACCTCTTATGCATCTTCAAC+TGG - chr3_2:90163608-90163627 Msa0436570:CDS 40.0%
CCTCTTATGCATCTTCAACT+GGG - chr3_2:90163609-90163628 Msa0436570:CDS 40.0%
!!! ATTTTAGGACAGAGGAGTTC+TGG + chr3_2:90163717-90163736 None:intergenic 40.0%
GTGATTATTGGAGACAGATG+AGG - chr3_2:90163778-90163797 Msa0436570:CDS 40.0%
TGGTAAGCACCTTAGTTACA+AGG - chr3_2:90163943-90163962 Msa0436570:CDS 40.0%
GGTAAGCACCTTAGTTACAA+GGG - chr3_2:90163944-90163963 Msa0436570:CDS 40.0%
! GTTTTTGCTTAAGGAAGCAG+TGG - chr3_2:90164007-90164026 Msa0436570:CDS 40.0%
ACAATGTCAAAGCCGTCATA+TGG - chr3_2:90164267-90164286 Msa0436570:CDS 40.0%
CAATGTCAAAGCCGTCATAT+GGG - chr3_2:90164268-90164287 Msa0436570:CDS 40.0%
CCTATTAGAGGAAGCTTCCA+TGG + chr3_2:90163516-90163535 None:intergenic 45.0%
CCATGGAAGCTTCCTCTAAT+AGG - chr3_2:90163513-90163532 Msa0436570:CDS 45.0%
TCACTTCCACACCATACACT+TGG - chr3_2:90163564-90163583 Msa0436570:CDS 45.0%
CCCAGTTGAAGATGCATAAG+AGG + chr3_2:90163612-90163631 None:intergenic 45.0%
ACTGGGTGAAATTTCTGCAG+TGG - chr3_2:90163626-90163645 Msa0436570:CDS 45.0%
AAACGCTGCCCTTGTAACTA+AGG + chr3_2:90163955-90163974 None:intergenic 45.0%
TTAGTTACAAGGGCAGCGTT+TGG - chr3_2:90163954-90163973 Msa0436570:CDS 45.0%
AAGGAAGCAGTGGAAATGTG+TGG - chr3_2:90164017-90164036 Msa0436570:CDS 45.0%
! CTTTTGCGTGTTCAGCAAAG+TGG - chr3_2:90164218-90164237 Msa0436570:CDS 45.0%
CCTATTAGAGGAAGCTTCCA+TGG + chr3_2:90163516-90163535 None:intergenic 45.0%
CCATGGAAGCTTCCTCTAAT+AGG - chr3_2:90163513-90163532 Msa0436570:CDS 45.0%
TCACTTCCACACCATACACT+TGG - chr3_2:90163564-90163583 Msa0436570:CDS 45.0%
CCCAGTTGAAGATGCATAAG+AGG + chr3_2:90163612-90163631 None:intergenic 45.0%
ACTGGGTGAAATTTCTGCAG+TGG - chr3_2:90163626-90163645 Msa0436570:CDS 45.0%
AAACGCTGCCCTTGTAACTA+AGG + chr3_2:90163955-90163974 None:intergenic 45.0%
TTAGTTACAAGGGCAGCGTT+TGG - chr3_2:90163954-90163973 Msa0436570:CDS 45.0%
AAGGAAGCAGTGGAAATGTG+TGG - chr3_2:90164017-90164036 Msa0436570:CDS 45.0%
! CTTTTGCGTGTTCAGCAAAG+TGG - chr3_2:90164218-90164237 Msa0436570:CDS 45.0%
TTGGGCCATAAACTTCCACC+AGG - chr3_2:90163489-90163508 Msa0436570:CDS 50.0%
TGGGCCATAAACTTCCACCA+GGG - chr3_2:90163490-90163509 Msa0436570:CDS 50.0%
ATGGCCCTGGTGGAAGTTTA+TGG + chr3_2:90163497-90163516 None:intergenic 50.0%
ATAAACTTCCACCAGGGCCA+TGG - chr3_2:90163496-90163515 Msa0436570:CDS 50.0%
GAAGCAGTGGAAATGTGTGG+TGG - chr3_2:90164020-90164039 Msa0436570:CDS 50.0%
TCAAACCATGCCGGCATTCA+AGG - chr3_2:90164176-90164195 Msa0436570:CDS 50.0%
TTTCACCTTGAATGCCGGCA+TGG + chr3_2:90164184-90164203 None:intergenic 50.0%
TTGGGCCATAAACTTCCACC+AGG - chr3_2:90163489-90163508 Msa0436570:CDS 50.0%
TGGGCCATAAACTTCCACCA+GGG - chr3_2:90163490-90163509 Msa0436570:CDS 50.0%
ATGGCCCTGGTGGAAGTTTA+TGG + chr3_2:90163497-90163516 None:intergenic 50.0%
ATAAACTTCCACCAGGGCCA+TGG - chr3_2:90163496-90163515 Msa0436570:CDS 50.0%
GAAGCAGTGGAAATGTGTGG+TGG - chr3_2:90164020-90164039 Msa0436570:CDS 50.0%
TCAAACCATGCCGGCATTCA+AGG - chr3_2:90164176-90164195 Msa0436570:CDS 50.0%
TTTCACCTTGAATGCCGGCA+TGG + chr3_2:90164184-90164203 None:intergenic 50.0%
AGAGGAAGCTTCCATGGCCC+TGG + chr3_2:90163510-90163529 None:intergenic 60.0%
AGAGGAAGCTTCCATGGCCC+TGG + chr3_2:90163510-90163529 None:intergenic 60.0%
GGAAGCTTCCATGGCCCTGG+TGG + chr3_2:90163507-90163526 None:intergenic 65.0%
GGAAGCTTCCATGGCCCTGG+TGG + chr3_2:90163507-90163526 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 90163387 90164316 90163387 ID=Msa0436570;Name=Msa0436570
chr3_2 mRNA 90163387 90164316 90163387 ID=Msa0436570-mRNA-1;Parent=Msa0436570;Name=Msa0436570-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|309
chr3_2 exon 90163387 90164316 90163387 ID=Msa0436570-mRNA-1:exon:26795;Parent=Msa0436570-mRNA-1
chr3_2 CDS 90163387 90164316 90163387 ID=Msa0436570-mRNA-1:cds;Parent=Msa0436570-mRNA-1
Gene Sequence

>Msa0436570

ATGGAATTCAAATCTGCTACCTTATTCCTGATCATTTCCTCATTCATCTTCTTCTTACTTTTGCTAGCAAAAATTTATAAACAGAAAGTCAAGGTGAGAAATTTGGGCCATAAACTTCCACCAGGGCCATGGAAGCTTCCTCTAATAGGAAACTTGCATCAACTAGCATTAGGAGGATCACTTCCACACCATACACTTGGAAATCTATCTCAAAAATATGGACCTCTTATGCATCTTCAACTGGGTGAAATTTCTGCAGTGGTTGTTTCATCTCCTGATATAGCCAAAGAAATAATGAAAACACATGATCTTTCTTTTGTTCATAGGCCAGAACTCCTCTGTCCTAAAATACTATCCTATGAATCAACAGATATTGCATTTGCTCCATATGGTGATTATTGGAGACAGATGAGGAAAATATGTACATCAGAACTTCTTAGTGCTAAAAGGGTTCAATCTTTTTCTTCCATTAGAGAAGATGAGGTAGAAAAGCTTATACAATCTATTCAAGGTTCACTCTCTCTACCACTTGATATTACTAAAATAGCTTTCTCTTTGGTAAGCACCTTAGTTACAAGGGCAGCGTTTGGTAAAAAGTCAAAGTATGAAGATGAACTTTTGTTTTTGCTTAAGGAAGCAGTGGAAATGTGTGGTGGTTTTGATGTTGCTGATTTGTTCCCTTCATTTAAACCTATTCATCTAATTACTAGGTTGAAAGCTAAATTGGAGAATATGCAAAAGAAGTTGGATAAGATTTTAGTAAGCATTATCAATGAGCATCAATCAAATTCAAACCATGCCGGCATTCAAGGTGAAAATCTAATTGAAGTTCTTTTGCGTGTTCAGCAAAGTGGAAGTCTTGAGATCCCAATCACAGATAACAATGTCAAAGCCGTCATATGGGTTAGTTATCATCATCTTTACACTTAA
Protein sequence

>Msa0436570

MEFKSATLFLIISSFIFFLLLLAKIYKQKVKVRNLGHKLPPGPWKLPLIGNLHQLALGGSLPHHTLGNLSQKYGPLMHLQLGEISAVVVSSPDIAKEIMKTHDLSFVHRPELLCPKILSYESTDIAFAPYGDYWRQMRKICTSELLSAKRVQSFSSIREDEVEKLIQSIQGSLSLPLDITKIAFSLVSTLVTRAAFGKKSKYEDELLFLLKEAVEMCGGFDVADLFPSFKPIHLITRLKAKLENMQKKLDKILVSIINEHQSNSNHAGIQGENLIEVLLRVQQSGSLEIPITDNNVKAVIWVSYHHLYT*