AlfalfaGEDB | Msa0436890

M. sativa cultivar zhongmu-4 / Msa0436890

KEGG: K13436
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0436890	AES92066.1	99.449	363	1	1	1	363	32	393	0.0	746

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0436890	sp\|Q41328\|PTI1_SOLLC	75.645	349	84	1	1	349	1	348	0.0	539

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0436890	G7JQ35	99.449	363	1	1	1	363	32	393	0.0	746

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0094690	Msa0436890	0.911828	3.907196e-83	-8.615850e-47
Msa0436890	Msa0567450	0.812119	4.976150e-51	-8.615850e-47
Msa0436890	Msa0967530	0.830487	2.856513e-55	-8.615850e-47
Msa0436890	Msa1011220	0.935400	9.003481e-97	-8.615850e-47
Msa0436890	Msa1011230	0.938829	3.516181e-99	-8.615850e-47
Msa0436890	Msa1219590	0.998655	6.880081e-272	-8.615850e-47
Msa0436890	Msa1258070	0.805332	1.404917e-49	-8.615850e-47
Msa0436890	Msa1437450	0.939901	5.817079e-100	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0436890	MtrunA17_Chr4g0069241	99.449	363	1	1	1	363	1	362	0.0	745
Msa0436890	MtrunA17_Chr1g0194101	72.779	349	95	0	1	349	1	349	0.0	527
Msa0436890	MtrunA17_Chr1g0213501	66.857	350	104	3	7	349	50	394	1.04e-162	461
Msa0436890	MtrunA17_Chr7g0258951	68.831	308	93	1	46	350	51	358	4.71e-147	420
Msa0436890	MtrunA17_Chr0c20g0493811	81.250	256	7	2	113	359	29	252	5.62e-142	403
Msa0436890	MtrunA17_Chr1g0175731	66.134	313	98	2	52	360	60	368	3.06e-141	405
Msa0436890	MtrunA17_Chr3g0084191	58.824	306	104	3	47	349	205	491	3.86e-115	343
Msa0436890	MtrunA17_Chr7g0262521	48.026	304	149	4	52	352	329	626	8.22e-90	285
Msa0436890	MtrunA17_Chr7g0270121	48.505	301	146	4	50	346	361	656	6.84e-88	280
Msa0436890	MtrunA17_Chr2g0289161	47.826	299	147	3	51	345	402	695	1.51e-86	276

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0436890	AT1G48210.1	70.994	362	104	1	1	362	1	361	0.0	530
Msa0436890	AT1G48210.7	70.994	362	104	1	1	362	1	361	0.0	530
Msa0436890	AT1G48210.2	70.994	362	104	1	1	362	1	361	0.0	530
Msa0436890	AT1G48210.3	70.994	362	104	1	1	362	1	361	0.0	530
Msa0436890	AT3G17410.2	76.558	337	79	0	26	362	26	362	0.0	512
Msa0436890	AT3G17410.1	76.558	337	79	0	26	362	26	362	0.0	512
Msa0436890	AT2G47060.4	65.823	395	98	5	1	359	1	394	9.03e-180	504
Msa0436890	AT2G47060.2	71.625	363	98	4	1	359	1	362	5.16e-178	499
Msa0436890	AT2G47060.1	71.625	363	98	4	1	359	1	362	5.16e-178	499
Msa0436890	AT3G62220.1	70.857	350	102	0	1	350	1	350	3.44e-176	494

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Find 108 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCACTCTTTGAAGAG+AGG	0.596344	3_2:+90736997	None:intergenic
AAAGGAGATTTACCGCCGTT+AGG	0.533083	3_2:+90738402	None:intergenic
AACATACTTCTATTTGAGGA+CGG	0.597225	3_2:-90737381	Msa0436890:CDS
AACCAAAGGTTCCAAGAACA+CGG	0.583305	3_2:+90737289	None:intergenic
AACCAGGTCAAGTTCTGTCA+TGG	0.525020	3_2:-90737503	Msa0436890:CDS
AACCATGTAGAATATCATGA+AGG	0.535938	3_2:+90737664	None:intergenic
AAGACGTGCGGCTGCATCAG+GGG	0.565018	3_2:+90737320	None:intergenic
AAGAGTGATGTTTACAGTTT+TGG	0.230925	3_2:-90736987	Msa0436890:CDS
AATAGGATCATGGGTTGCTT+TGG	0.351984	3_2:-90738489	Msa0436890:exon
AATCTAAGAAATGCTGGCTT+TGG	0.378388	3_2:+90736244	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATAAATTCCAAACTCTATC+TGG	-	chr3_2:90736162-90736181	Msa0436890:three_prime_UTR	30.0%
CAGAAAGCAAAGTGATTAAA+GGG	+	chr3_2:90736220-90736239	None:intergenic	30.0%
TTCAGAACATAATAGGATCA+TGG	-	chr3_2:90736390-90736409	Msa0436890:CDS	30.0%
TCAGAACATAATAGGATCAT+GGG	-	chr3_2:90736391-90736410	Msa0436890:CDS	30.0%
TTTGGTACAAAAACTTTCGT+TGG	-	chr3_2:90736883-90736902	Msa0436890:intron	30.0%
TGAAGTGGCAATTAAAAAGT+TGG	-	chr3_2:90736954-90736973	Msa0436890:CDS	30.0%
TAACCTGAGAAAGAAATTCT+TGG	+	chr3_2:90736999-90737018	None:intergenic	30.0%
AAGAATTTCTTTCTCAGGTT+AGG	-	chr3_2:90736998-90737017	Msa0436890:CDS	30.0%
ACCATGTAGAATATCATGAA+GGG	+	chr3_2:90737227-90737246	None:intergenic	30.0%
AACCATGTAGAATATCATGA+AGG	+	chr3_2:90737228-90737247	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	90735949	90738962	90735949	ID=Msa0436890;Name=Msa0436890
chr3_2	mRNA	90735949	90738962	90735949	ID=Msa0436890-mRNA-1;Parent=Msa0436890;Name=Msa0436890-mRNA-1;_AED=0.13;_eAED=0.13;_QI=325\|1\|1\|1\|0.85\|0.75\|8\|327\|363
chr3_2	exon	90735949	90736410	90735949	ID=Msa0436890-mRNA-1:exon:27055;Parent=Msa0436890-mRNA-1
chr3_2	exon	90736528	90736614	90736528	ID=Msa0436890-mRNA-1:exon:27054;Parent=Msa0436890-mRNA-1
chr3_2	exon	90736905	90737037	90736905	ID=Msa0436890-mRNA-1:exon:27053;Parent=Msa0436890-mRNA-1
chr3_2	exon	90737276	90737549	90737276	ID=Msa0436890-mRNA-1:exon:27052;Parent=Msa0436890-mRNA-1
chr3_2	exon	90737667	90737793	90737667	ID=Msa0436890-mRNA-1:exon:27051;Parent=Msa0436890-mRNA-1
chr3_2	exon	90737897	90738144	90737897	ID=Msa0436890-mRNA-1:exon:27050;Parent=Msa0436890-mRNA-1
chr3_2	exon	90738415	90738516	90738415	ID=Msa0436890-mRNA-1:exon:27049;Parent=Msa0436890-mRNA-1
chr3_2	exon	90738652	90738962	90738652	ID=Msa0436890-mRNA-1:exon:27048;Parent=Msa0436890-mRNA-1
chr3_2	five_prime_UTR	90738652	90738962	90738652	ID=Msa0436890-mRNA-1:five_prime_utr;Parent=Msa0436890-mRNA-1
chr3_2	five_prime_UTR	90738503	90738516	90738503	ID=Msa0436890-mRNA-1:five_prime_utr;Parent=Msa0436890-mRNA-1
chr3_2	CDS	90738415	90738502	90738415	ID=Msa0436890-mRNA-1:cds;Parent=Msa0436890-mRNA-1
chr3_2	CDS	90737897	90738144	90737897	ID=Msa0436890-mRNA-1:cds;Parent=Msa0436890-mRNA-1
chr3_2	CDS	90737667	90737793	90737667	ID=Msa0436890-mRNA-1:cds;Parent=Msa0436890-mRNA-1
chr3_2	CDS	90737276	90737549	90737276	ID=Msa0436890-mRNA-1:cds;Parent=Msa0436890-mRNA-1
chr3_2	CDS	90736905	90737037	90736905	ID=Msa0436890-mRNA-1:cds;Parent=Msa0436890-mRNA-1
chr3_2	CDS	90736528	90736614	90736528	ID=Msa0436890-mRNA-1:cds;Parent=Msa0436890-mRNA-1
chr3_2	CDS	90736276	90736410	90736276	ID=Msa0436890-mRNA-1:cds;Parent=Msa0436890-mRNA-1
chr3_2	three_prime_UTR	90735949	90736275	90735949	ID=Msa0436890-mRNA-1:three_prime_utr;Parent=Msa0436890-mRNA-1

Gene Sequence

>Msa0436890

ATGGGTTGCTTTGGATTCTGCAAAGAGAATGATGCTTATACTACTGCTGACAACAAAGGAATCTTCATGCAAACCAATCCTAACGGCGGGAACACCAGTTATCATGGCAGACACACTGCAGTAACTGTTCCTCGGCCCATAAATCTCCAACCTATTTCTGTCCCTTCCATTACAGTAGATGAACTGAGGTCTTTGACAGATAATTTTGGTACAAAAACTTTCGTTGGTGAAGGTGCATATGGGAAAGTGTATCGTGCCACATTGAAAAATGGACGTGAAGTGGCAATTAAAAAGTTGGATTCCAGTAAGCAGCCAGACCAAGAATTTCTTTCTCAGGTCTCCATCGTATCAAGGCTAAAGCACGAAAACGTTGTTGAGCTTGTTAATTATTGTGTTGATGGTCCTTTGCGTGCCCTTGCATACGAGTATGCTCCTAATGGATCCCTTCATGATATTCTACATGGACGCAAAGGTGTCAAGGGTGCAGAACCAGGTCAAGTTCTGTCATGGGCTGAAAGAGTTAAAATTGCTGTTGGAGCAGCCAGAGGCCTTGAATATCTTCATGAAAAGGCAGAGGTTCATATTGTTCATCGTTACATTAAGTCTAGTAACATACTTCTATTTGAGGACGGCGTTGCAAAGATTGCTGATTTTGATCTGTCGAATCAAGCCCCTGATGCAGCCGCACGTCTTCATTCTACCCGTGTTCTTGGAACCTTTGGTTATCATGCTCCAGAATATGCAATGACTGGAAACCTCTCTTCAAAGAGTGATGTTTACAGTTTTGGAGTTATACTGTTGGAACTCTTAACTGGGCGTAAACCTGTTGATCATACACTTCCCCGAGGACAACAAAGCCTTGTGACCTGGGCAACACCAAAGCTTAGTGAAGATAAGGTGAAGCAGTGTGTTGATGTTAGATTAAAGGGAGAGTACCCTTCCAAGTCAGTTGCAAAGTTGGCTGCTGTTGCTGCATTGTGTGTTCAATATGAAGCCGAGTTTCGACCAAATATGAGCATCATTGTCAAAGCTTTACAGCCTCTAATGAATAATACTCGTTCTTCTCAACCAAGGGAACCACGCAACTTGTAA

Protein sequence

>Msa0436890

MGCFGFCKENDAYTTADNKGIFMQTNPNGGNTSYHGRHTAVTVPRPINLQPISVPSITVDELRSLTDNFGTKTFVGEGAYGKVYRATLKNGREVAIKKLDSSKQPDQEFLSQVSIVSRLKHENVVELVNYCVDGPLRALAYEYAPNGSLHDILHGRKGVKGAEPGQVLSWAERVKIAVGAARGLEYLHEKAEVHIVHRYIKSSNILLFEDGVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGNLSSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVRLKGEYPSKSVAKLAAVAALCVQYEAEFRPNMSIIVKALQPLMNNTRSSQPREPRNL*