AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0567450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567450 MtrunA17_Chr8g0382191 84.156 871 83 5 12 844 10 863 0.0 1496
Msa0567450 MtrunA17_Chr2g0279141 42.466 876 408 21 4 844 6 820 0.0 596
Msa0567450 MtrunA17_Chr4g0050401 47.253 455 186 9 415 844 382 807 3.36e-118 383
Msa0567450 MtrunA17_Chr4g0050401 37.453 267 152 3 7 258 9 275 4.27e-48 185
Msa0567450 MtrunA17_Chr8g0382181 47.112 329 132 9 53 345 8 330 1.86e-78 262
Msa0567450 MtrunA17_Chr8g0382181 74.150 147 38 0 437 583 330 476 7.52e-66 228
Msa0567450 MtrunA17_Chr3g0122351 38.547 358 198 6 482 828 386 732 2.02e-65 236
Msa0567450 MtrunA17_Chr3g0122351 56.923 130 53 1 12 138 8 137 3.78e-43 169
Msa0567450 MtrunA17_Chr8g0377501 39.096 376 205 6 477 841 402 764 4.07e-65 235
Msa0567450 MtrunA17_Chr8g0377501 54.610 141 64 0 12 152 15 155 3.50e-46 179
Msa0567450 MtrunA17_Chr4g0068161 31.591 440 269 10 413 842 310 727 5.86e-48 184
Msa0567450 MtrunA17_Chr4g0068161 55.000 140 61 1 12 151 26 163 3.82e-35 144
Msa0567450 MtrunA17_Chr2g0294711 31.308 428 261 10 413 829 298 703 6.03e-47 181
Msa0567450 MtrunA17_Chr2g0294711 54.225 142 63 1 12 153 26 165 2.35e-42 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567450 AT5G64220.1 41.884 881 414 28 3 844 5 826 0.0 598
Msa0567450 AT5G64220.2 41.884 881 414 28 3 844 5 826 0.0 598
Msa0567450 AT2G22300.3 53.898 449 179 7 404 844 321 749 9.97e-144 449
Msa0567450 AT2G22300.3 84.615 78 12 0 57 134 1 78 7.17e-39 156
Msa0567450 AT2G22300.2 53.675 449 180 7 404 844 379 807 9.91e-143 448
Msa0567450 AT2G22300.2 70.769 130 38 0 5 134 7 136 2.37e-58 216
Msa0567450 AT2G22300.1 53.675 449 180 7 404 844 379 807 9.91e-143 448
Msa0567450 AT2G22300.1 70.769 130 38 0 5 134 7 136 2.37e-58 216
Msa0567450 AT5G09410.4 47.309 446 199 10 415 844 231 656 4.84e-120 385
Msa0567450 AT5G09410.1 47.309 446 199 10 415 844 334 759 1.23e-118 384
Msa0567450 AT5G09410.1 67.857 140 44 1 12 151 17 155 2.21e-56 210
Msa0567450 AT5G09410.2 47.309 446 199 10 415 844 352 777 2.34e-118 383
Msa0567450 AT5G09410.2 67.857 140 44 1 12 151 17 155 2.53e-56 210
Msa0567450 AT5G09410.3 47.309 446 199 10 415 844 411 836 3.37e-118 384
Msa0567450 AT5G09410.3 55.882 170 44 2 12 151 76 244 5.29e-51 194
Msa0567450 AT1G67310.1 37.741 363 199 6 480 827 442 792 3.96e-63 230
Msa0567450 AT1G67310.1 52.459 122 58 0 12 133 37 158 2.25e-38 155
Msa0567450 AT3G16940.2 31.293 441 266 9 413 840 244 660 3.28e-46 177
Msa0567450 AT3G16940.2 53.435 131 61 0 12 142 24 154 2.46e-39 156
Msa0567450 AT3G16940.1 31.066 441 269 8 413 841 244 661 8.74e-46 177
Msa0567450 AT3G16940.1 53.435 131 61 0 12 142 24 154 5.36e-39 156
Msa0567450 AT3G16940.3 31.066 441 269 8 413 841 217 634 9.53e-46 177
Msa0567450 AT3G16940.3 54.331 127 58 0 16 142 1 127 8.21e-38 152

Find 165 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTTATTGGGTTCTGTTTC+AGG 0.110677 4_1:-68792592 None:intergenic
TCCAACATTGTTAATGTATT+TGG 0.116953 4_1:-68792473 None:intergenic
ATTCCCCTTCTAGTGCTTAT+TGG 0.214001 4_1:+68793565 Msa0567450:CDS
GGTAGGGGACAGTTAGAATA+AGG 0.227331 4_1:-68792063 None:intergenic
TGTTATAGTTAGTGAGAATT+TGG 0.234871 4_1:-68790171 None:intergenic
ACTATTGATTCCCGTGTTAT+TGG 0.255860 4_1:-68792605 None:intergenic
TGTGAACTCTCAAAAGTTCT+TGG 0.257449 4_1:+68792502 Msa0567450:CDS
TCTACGTAACATGTTCTAAT+AGG 0.258394 4_1:+68794143 Msa0567450:CDS
GCAAGATATCTTAGAAAATA+AGG 0.263006 4_1:+68792537 Msa0567450:CDS
GCCTGAATAGGCACTATCTT+TGG 0.278496 4_1:-68793214 None:intergenic
TTCCCCTTCTAGTGCTTATT+GGG 0.285574 4_1:+68793566 Msa0567450:CDS
AGCAACAATTGTTGGTTCTA+AGG 0.288908 4_1:-68794599 None:intergenic
ATTTGAAGACTCGGAAATTA+AGG 0.297823 4_1:+68793722 Msa0567450:CDS
CCACCTTCATCTAATACATT+TGG 0.299243 4_1:-68794532 None:intergenic
GTGAACTTTCGCGATGTAAA+TGG 0.307864 4_1:+68794631 Msa0567450:CDS
ATACCTTCACTTCCCGATAA+TGG 0.312933 4_1:-68791465 None:intergenic
TACAATTAGTATGGCATGTA+AGG 0.327664 4_1:-68792366 None:intergenic
TTGCTTCCCTCATATCTCTT+GGG 0.341997 4_1:+68795218 Msa0567450:CDS
CAGCCTTTCTTGGCTACGAT+TGG 0.345539 4_1:+68794575 Msa0567450:CDS
CCCAAAGATAGTGCCTATTC+AGG 0.346532 4_1:+68793213 Msa0567450:CDS
GATACAGTTGAAAGCGAAAA+TGG 0.348848 4_1:+68793588 Msa0567450:CDS
CAGCTGACGCTGAAGGAAAT+TGG 0.352678 4_1:+68792707 Msa0567450:CDS
GACAAGTTAAAATCAGATCT+AGG 0.361350 4_1:+68793387 Msa0567450:CDS
CACCTTCATCTAATACATTT+GGG 0.362638 4_1:-68794531 None:intergenic
ATGAAGCAGAAGATTGTAAA+TGG 0.369204 4_1:+68794023 Msa0567450:CDS
GTTGCTTCCCTCATATCTCT+TGG 0.375690 4_1:+68795217 Msa0567450:CDS
CTATTGATTCCCGTGTTATT+GGG 0.377443 4_1:-68792604 None:intergenic
AGCTGATCATAGCAAATAGA+TGG 0.386884 4_1:-68793666 None:intergenic
TGAAATTGTGATAGATGATC+AGG 0.393656 4_1:+68792393 Msa0567450:CDS
ATGGATGGACTGCTCTTCAT+TGG 0.395252 4_1:+68794650 Msa0567450:CDS
ATTCAACAGCCATGCAAATT+CGG 0.401331 4_1:+68791981 Msa0567450:CDS
CCATGCCCACAACATCCTTC+TGG 0.406110 4_1:+68795265 Msa0567450:CDS
TTAGAAAAGATGGACATAAC+TGG 0.406867 4_1:+68790384 Msa0567450:CDS
ACCAAATACATTAACAATGT+TGG 0.410916 4_1:+68792472 Msa0567450:CDS
ACATCGTTCTAGTCCATTAT+CGG 0.412410 4_1:+68791452 Msa0567450:CDS
GTATCCCAATAAGCACTAGA+AGG 0.413133 4_1:-68793570 None:intergenic
GCCGACCTAGCTTCTGCAAA+TGG 0.416041 4_1:+68795298 Msa0567450:CDS
TTTCCTTGTGAACAGGCCTC+TGG 0.421100 4_1:+68793162 Msa0567450:intron
TTCACACCAGCAACAATTGT+TGG 0.422507 4_1:-68794607 None:intergenic
CTTCAGAAAACAACTGAAGA+TGG 0.424083 4_1:+68794502 Msa0567450:CDS
TTAGAACCAACAATTGTTGC+TGG 0.425908 4_1:+68794601 Msa0567450:CDS
CCTGAATAGGCACTATCTTT+GGG 0.427656 4_1:-68793213 None:intergenic
CATAGTTCTCCAAGTGCACC+TGG 0.428531 4_1:-68793635 None:intergenic
CATTGATTATTCCCCAAGTT+GGG 0.435352 4_1:+68793698 Msa0567450:CDS
GAAATTTACCTTTGAGAGGT+AGG 0.436930 4_1:-68792080 None:intergenic
GCCAGTGAATCTTTCATTGA+AGG 0.442930 4_1:-68795463 None:intergenic
AGTTGATCATGTACAAGTTC+TGG 0.447402 4_1:-68794439 None:intergenic
AGATATGAAGAAGCTGAATC+AGG 0.447906 4_1:+68791803 Msa0567450:CDS
TCATTGATTATTCCCCAAGT+TGG 0.450073 4_1:+68793697 Msa0567450:CDS
TATTCCTTCCCAGGTGCACT+TGG 0.450888 4_1:+68793626 Msa0567450:CDS
ACAACAGAGAACACTATTCC+TGG 0.452005 4_1:-68794086 None:intergenic
AGCCTTTCTTGGCTACGATT+GGG 0.452371 4_1:+68794576 Msa0567450:CDS
TGTAAATGGTCATGCATGTT+CGG 0.458202 4_1:+68794037 Msa0567450:CDS
GAGTCTTCAAATGCCCAACT+TGG 0.460974 4_1:-68793711 None:intergenic
AGTAAAATCAGTTCTTTGCT+TGG 0.461341 4_1:+68794358 Msa0567450:CDS
CAGTTCTTTGCTTGGTAGGA+AGG 0.462643 4_1:+68794366 Msa0567450:CDS
TTAGAACATGTTACGTAGAA+AGG 0.466234 4_1:-68794139 None:intergenic
AATGGACACAAAGGAATTGC+TGG 0.466727 4_1:+68795316 Msa0567450:CDS
ACGAGATACTTTAGAAAAGA+TGG 0.469912 4_1:+68790374 Msa0567450:CDS
ACCTCAACACAAGGCTGGAC+GGG 0.474522 4_1:+68794114 Msa0567450:CDS
TCTCAAGGATATGAGACAAT+GGG 0.476448 4_1:+68792631 Msa0567450:CDS
GTAGGGGACAGTTAGAATAA+GGG 0.480722 4_1:-68792062 None:intergenic
CCCGAGGGAAGTCATGCTCT+TGG 0.481194 4_1:-68794294 None:intergenic
ATATCTCTTGGGGCAGCACC+AGG 0.481476 4_1:+68795229 Msa0567450:CDS
CCCAAGAGCATGACTTCCCT+CGG 0.481534 4_1:+68794293 Msa0567450:CDS
AAGTGCCAGCAGAGATAACC+AGG 0.482366 4_1:+68794068 Msa0567450:CDS
CCGAGGGAAGTCATGCTCTT+GGG 0.487143 4_1:-68794293 None:intergenic
GGGATCGATAAAAGCCTAGT+TGG 0.487311 4_1:+68793408 Msa0567450:CDS
CAATTTCCTTCAGCGTCAGC+TGG 0.488754 4_1:-68792706 None:intergenic
CTCACACGATGAGCCTGAAT+AGG 0.489940 4_1:-68793226 None:intergenic
CTATTCCTGGTTATCTCTGC+TGG 0.492732 4_1:-68794073 None:intergenic
AAATTTACCTTTGAGAGGTA+GGG 0.494113 4_1:-68792079 None:intergenic
TGGATGGACTGCTCTTCATT+GGG 0.495129 4_1:+68794651 Msa0567450:CDS
TTGGTAGGAAGGACGGTGAA+TGG 0.497042 4_1:+68794377 Msa0567450:CDS
GTTTCAGGAAAAGACTGAAA+AGG 0.498768 4_1:-68792577 None:intergenic
TGCTTCCCTCATATCTCTTG+GGG 0.499217 4_1:+68795219 Msa0567450:CDS
AAATCAGTTCTTTGCTTGGT+AGG 0.505479 4_1:+68794362 Msa0567450:CDS
TGGTAGGAAGGACGGTGAAT+GGG 0.511619 4_1:+68794378 Msa0567450:CDS
AGTCTTCAAATGCCCAACTT+GGG 0.512638 4_1:-68793710 None:intergenic
CCAGAAGGATGTTGTGGGCA+TGG 0.516822 4_1:-68795265 None:intergenic
ACCTTCAATGAAAGATTCAC+TGG 0.517231 4_1:+68795462 Msa0567450:CDS
TTTGTTGGTGTGTATGAAGA+AGG 0.517240 4_1:-68793314 None:intergenic
AATTTCTTCAATATCTGTTG+TGG 0.517632 4_1:-68790104 None:intergenic
AAGGTTGCCTGTCATTCCTC+AGG 0.518272 4_1:+68792417 Msa0567450:CDS
AGCTCGACAGTTTCAATCGA+TGG 0.519289 4_1:+68793502 Msa0567450:CDS
CATGGATCAGTAAGTGCTCC+TGG 0.519816 4_1:-68795247 None:intergenic
AATTTACCTTTGAGAGGTAG+GGG 0.520672 4_1:-68792078 None:intergenic
CAGTACAACTATTCCTTCCC+AGG 0.520858 4_1:+68793617 Msa0567450:CDS
CATCGTTCTAGTCCATTATC+GGG 0.523240 4_1:+68791453 Msa0567450:CDS
CTTCTTGAGTATAATTGACT+CGG 0.525223 4_1:-68794198 None:intergenic
TGTGTCCATTTGCAGAAGCT+AGG 0.527068 4_1:-68795303 None:intergenic
GGCCCAATCGTAGCCAAGAA+AGG 0.527167 4_1:-68794578 None:intergenic
GATATCTTAGAAAATAAGGC+TGG 0.527732 4_1:+68792541 Msa0567450:CDS
TAGTTATAGTGACAATGAGC+AGG 0.528100 4_1:+68793251 Msa0567450:CDS
CGATGGATGAGTAAAGAACT+AGG 0.529382 4_1:+68793519 Msa0567450:CDS
ACAAGTTAAAATCAGATCTA+GGG 0.529700 4_1:+68793388 Msa0567450:CDS
TTCAGAAAACAACTGAAGAT+GGG 0.530144 4_1:+68794503 Msa0567450:CDS
TTCTCCAAGTGCACCTGGGA+AGG 0.531264 4_1:-68793630 None:intergenic
GGCCCAAATGTATTAGATGA+AGG 0.533133 4_1:+68794529 Msa0567450:CDS
GCACTTGGAGAACTATGTAC+TGG 0.534994 4_1:+68793641 Msa0567450:CDS
TTCTACCAGAAGGATGTTGT+GGG 0.536843 4_1:-68795270 None:intergenic
GTGCTGCCCCAAGAGATATG+AGG 0.541703 4_1:-68795225 None:intergenic
CACCTCAACACAAGGCTGGA+CGG 0.542743 4_1:+68794113 Msa0567450:CDS
ACCCGTCCAGCCTTGTGTTG+AGG 0.545426 4_1:-68794115 None:intergenic
TCATCCACCTGAGGAATGAC+AGG 0.545608 4_1:-68792424 None:intergenic
TATTACAAGCACAATATCGA+TGG 0.548796 4_1:+68790128 Msa0567450:CDS
GAGTGTCTTCTATTCCAACT+AGG 0.550195 4_1:-68793422 None:intergenic
AGTGTATCTGTGGCAGAAGA+GGG 0.550559 4_1:+68793471 Msa0567450:CDS
TTTGCAGAAGCTAGGTCGGC+TGG 0.551088 4_1:-68795295 None:intergenic
AGAATTTGGCAAATTTCAGC+CGG 0.551681 4_1:-68790157 None:intergenic
TGACGCTGAAGGAAATTGGC+AGG 0.551960 4_1:+68792711 Msa0567450:CDS
AAGTGTATCTGTGGCAGAAG+AGG 0.553975 4_1:+68793470 Msa0567450:CDS
TATCCCAATAAGCACTAGAA+GGG 0.554536 4_1:-68793569 None:intergenic
GTATTAGATGAAGGTGGCCA+AGG 0.562370 4_1:+68794538 Msa0567450:CDS
ACAATATCGATGGCTACGTC+CGG 0.566740 4_1:+68790138 Msa0567450:CDS
AAGTTGGGCATTTGAAGACT+CGG 0.569405 4_1:+68793713 Msa0567450:CDS
CTGCAAAATGAAGCACACCT+TGG 0.570206 4_1:-68794555 None:intergenic
TCTTTGCTTGGTAGGAAGGA+CGG 0.572183 4_1:+68794370 Msa0567450:CDS
TGAAGAAATTTACCTTTGAG+AGG 0.572440 4_1:-68792084 None:intergenic
TCCATTTGCAGAAGCTAGGT+CGG 0.576737 4_1:-68795299 None:intergenic
GTCTTCAAATGCCCAACTTG+GGG 0.578425 4_1:-68793709 None:intergenic
TATACACCTCAACACAAGGC+TGG 0.578694 4_1:+68794109 Msa0567450:CDS
ATACTGTTTAGTAATGCTGA+TGG 0.578753 4_1:-68792665 None:intergenic
GGCACTATCTTTGGGCCATG+TGG 0.581003 4_1:-68793205 None:intergenic
GGAATCAATAGTACTTCTCA+AGG 0.582466 4_1:+68792616 Msa0567450:CDS
CCAAGAGCATGACTTCCCTC+GGG 0.583296 4_1:+68794294 Msa0567450:CDS
TCATACACACCAACAAAACA+AGG 0.587677 4_1:+68793320 Msa0567450:CDS
TAAAAGATAAACTACATGCA+TGG 0.588544 4_1:+68794476 Msa0567450:CDS
TTCTCAAGGATATGAGACAA+TGG 0.588805 4_1:+68792630 Msa0567450:CDS
TGCTGCCCCAAGAGATATGA+GGG 0.589348 4_1:-68795224 None:intergenic
TTTATACCAGCTGACGCTGA+AGG 0.590312 4_1:+68792700 Msa0567450:CDS
AGTAGAAATCCGAATTTGCA+TGG 0.591866 4_1:-68791990 None:intergenic
GTTCTACCAGAAGGATGTTG+TGG 0.592131 4_1:-68795271 None:intergenic
TTGTTATACACCTCAACACA+AGG 0.604166 4_1:+68794105 Msa0567450:CDS
AACTGTCCCCTACCTCTCAA+AGG 0.606490 4_1:+68792072 Msa0567450:CDS
ATTCTTTAAGCGCATCCACA+TGG 0.606620 4_1:+68793190 Msa0567450:CDS
AGAAACATGAGAGAAACCGT+TGG 0.609159 4_1:+68795391 Msa0567450:CDS
TTACACTGCTACTACGCCCA+TGG 0.609511 4_1:+68790701 Msa0567450:CDS
GACTCTATTAAGTGTATCTG+TGG 0.611735 4_1:+68793461 Msa0567450:CDS
ATTGCTGCTTCTGATCTCAC+CGG 0.611990 4_1:-68794230 None:intergenic
ACTCAAGAAGTCAACACTGC+CGG 0.614091 4_1:+68794211 Msa0567450:CDS
AGTCCATTATCGGGAAGTGA+AGG 0.615277 4_1:+68791462 Msa0567450:CDS
TCGGCTGGTGTTCTACCAGA+AGG 0.617785 4_1:-68795280 None:intergenic
TTGTGATAGATGATCAGGAA+AGG 0.618020 4_1:+68792398 Msa0567450:CDS
GTTGCCTGTCATTCCTCAGG+TGG 0.619752 4_1:+68792420 Msa0567450:CDS
CTATTCAGGCTCATCGTGTG+AGG 0.626917 4_1:+68793227 Msa0567450:CDS
ATGAAGAAGGAACTGTTCCA+AGG 0.628051 4_1:-68793301 None:intergenic
ACTTTCGCGATGTAAATGGA+TGG 0.628820 4_1:+68794635 Msa0567450:CDS
ATCCCAATAAGCACTAGAAG+GGG 0.640484 4_1:-68793568 None:intergenic
GCTTCTGCAAATGGACACAA+AGG 0.643597 4_1:+68795307 Msa0567450:CDS
GGAAGCTCATGAGAGACTCA+AGG 0.645990 4_1:+68790436 Msa0567450:CDS
TGAAACAGAACCCAATAACA+CGG 0.650306 4_1:+68792594 Msa0567450:CDS
AAAACAACTGAAGATGGGAA+AGG 0.651527 4_1:+68794508 Msa0567450:CDS
TAATCGAATCTAAATCCCGA+GGG 0.653442 4_1:-68794309 None:intergenic
CCAAATGTATTAGATGAAGG+TGG 0.656043 4_1:+68794532 Msa0567450:CDS
CTAATCGAATCTAAATCCCG+AGG 0.658480 4_1:-68794310 None:intergenic
GAAACAGAACCCAATAACAC+GGG 0.662228 4_1:+68792595 Msa0567450:CDS
ACGAACTTACTGGATGCTTG+AGG 0.663844 4_1:+68790748 Msa0567450:CDS
GAAAAGATGGACATAACTGG+AGG 0.677852 4_1:+68790387 Msa0567450:CDS
ATAGTTCTCCAAGTGCACCT+GGG 0.691663 4_1:-68793634 None:intergenic
CTCAAGGATATGAGACAATG+GGG 0.695507 4_1:+68792632 Msa0567450:CDS
TTTACCGTCTAGCATAACAG+TGG 0.698914 4_1:+68791771 Msa0567450:intron
ATACTTGGAGGCATATACGA+AGG 0.704350 4_1:-68790214 None:intergenic
GCTTAAAGAATTAAAACCAG+AGG 0.714724 4_1:-68793178 None:intergenic
AGTAAGATATCATCCACCTG+AGG 0.729515 4_1:-68792433 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTATTTAGTTTTAAATC+AGG + chr4_1:68792863-68792882 Msa0567450:intron 10.0%
!! TGATTAATAAAATTCTGTTA+AGG + chr4_1:68790894-68790913 Msa0567450:intron 15.0%
!!! AAGAAATTGCTAATTTTTTT+TGG + chr4_1:68791348-68791367 Msa0567450:intron 15.0%
!!! TTTCAATTTTACAATTAGTA+TGG - chr4_1:68792378-68792397 None:intergenic 15.0%
!!! TTTTATGAATTGTGATGTTT+TGG + chr4_1:68790304-68790323 Msa0567450:intron 20.0%
!! GTTACAACTTTAATCTAAAT+TGG + chr4_1:68790513-68790532 Msa0567450:intron 20.0%
!! ATTCAATGTAATGGTTTATA+CGG - chr4_1:68790645-68790664 None:intergenic 20.0%
!! TCATATGTTATTCAATGTAA+TGG - chr4_1:68790654-68790673 None:intergenic 20.0%
!!! ATCCTTATTTTATAACTAAG+TGG + chr4_1:68790860-68790879 Msa0567450:intron 20.0%
!! AACCACTTAGTTATAAAATA+AGG - chr4_1:68790865-68790884 None:intergenic 20.0%
!!! TTATTTTATAACTAAGTGGT+TGG + chr4_1:68790864-68790883 Msa0567450:intron 20.0%
!!! TATTTTATAACTAAGTGGTT+GGG + chr4_1:68790865-68790884 Msa0567450:intron 20.0%
!!! AAATTGCTAATTTTTTTTGG+TGG + chr4_1:68791351-68791370 Msa0567450:intron 20.0%
!!! GCTTTTTTATTTTACATTCT+TGG + chr4_1:68791542-68791561 Msa0567450:intron 20.0%
!!! ATTAGATTCTTCATTTTCTT+TGG - chr4_1:68791698-68791717 None:intergenic 20.0%
!! TTCAAATCGTTATTAGAATA+AGG - chr4_1:68791847-68791866 None:intergenic 20.0%
!!! AGTTATTCAAAAAGTTTTCT+AGG - chr4_1:68791886-68791905 None:intergenic 20.0%
!!! TCTAGAATAGAATTTTATTG+CGG - chr4_1:68792269-68792288 None:intergenic 20.0%
!!! AAAAATTTAAAGACTAGTCA+AGG + chr4_1:68793046-68793065 Msa0567450:intron 20.0%
!!! CTTTTAAAAGTATTTCATGA+GGG - chr4_1:68793362-68793381 None:intergenic 20.0%
!! ATTAAAAAAAATGGTATCCA+TGG + chr4_1:68793879-68793898 Msa0567450:intron 20.0%
!!! ACTACTAATATCAATTTTAC+AGG + chr4_1:68793967-68793986 Msa0567450:intron 20.0%
!!! GATACTTTTAATAAACGATT+TGG + chr4_1:68794259-68794278 Msa0567450:CDS 20.0%
!!! TGATTTTTCAATTTTCATTG+AGG + chr4_1:68795159-68795178 Msa0567450:intron 20.0%
! AATTTCTTCAATATCTGTTG+TGG - chr4_1:68790107-68790126 None:intergenic 25.0%
! TGTTATAGTTAGTGAGAATT+TGG - chr4_1:68790174-68790193 None:intergenic 25.0%
! GAATCAGAATTAATCATACT+TGG - chr4_1:68790232-68790251 None:intergenic 25.0%
! AAAAAGATGGAAAAACTGTT+AGG + chr4_1:68790414-68790433 Msa0567450:CDS 25.0%
! AAAAGATGGAAAAACTGTTA+GGG + chr4_1:68790415-68790434 Msa0567450:CDS 25.0%
!! ATACCTAAGGTTTTTATCTT+AGG - chr4_1:68790486-68790505 None:intergenic 25.0%
!! GAATAACATATGATGTTTTC+AGG + chr4_1:68790661-68790680 Msa0567450:intron 25.0%
!! ATTATCATTTTCTTCTCCAT+GGG - chr4_1:68790720-68790739 None:intergenic 25.0%
!! AATTATCATTTTCTTCTCCA+TGG - chr4_1:68790721-68790740 None:intergenic 25.0%
! TTTAGTGTGAGATTTGAAAA+TGG - chr4_1:68790792-68790811 None:intergenic 25.0%
!!! AGTTGTTTTTACAATTGAAG+AGG - chr4_1:68791007-68791026 None:intergenic 25.0%
!!! ATCTTTTCCTTGTTATTTGA+TGG + chr4_1:68791517-68791536 Msa0567450:intron 25.0%
!! ACATTCTTGGTAACAATTTA+AGG + chr4_1:68791555-68791574 Msa0567450:intron 25.0%
!!! ACATATAATTTTTCAGTGCT+TGG + chr4_1:68791593-68791612 Msa0567450:intron 25.0%
!!! GAACACCTATATTACTTTTA+AGG - chr4_1:68791629-68791648 None:intergenic 25.0%
! ATATTAAAATAGACACGAGA+AGG - chr4_1:68791936-68791955 None:intergenic 25.0%
! TTTATATATTCCGCAAATGT+TGG + chr4_1:68792320-68792339 Msa0567450:intron 25.0%
! ACCAAATACATTAACAATGT+TGG + chr4_1:68792472-68792491 Msa0567450:CDS 25.0%
! TCCAACATTGTTAATGTATT+TGG - chr4_1:68792476-68792495 None:intergenic 25.0%
! GCAAGATATCTTAGAAAATA+AGG + chr4_1:68792537-68792556 Msa0567450:CDS 25.0%
! GTTCTATATAAGCTTCAATA+TGG + chr4_1:68792897-68792916 Msa0567450:intron 25.0%
!!! GCTTTTAAAAGTATTTCATG+AGG - chr4_1:68793363-68793382 None:intergenic 25.0%
! ACAAGTTAAAATCAGATCTA+GGG + chr4_1:68793388-68793407 Msa0567450:CDS 25.0%
! TAAAAGATAAACTACATGCA+TGG + chr4_1:68794476-68794495 Msa0567450:CDS 25.0%
! TGACAATACATGAAACTAAT+AGG + chr4_1:68794760-68794779 Msa0567450:intron 25.0%
! AATATGCTTCATTTCATCAT+AGG + chr4_1:68794888-68794907 Msa0567450:intron 25.0%
! ATATGCTTCATTTCATCATA+GGG + chr4_1:68794889-68794908 Msa0567450:intron 25.0%
!! TGCATTTTACTTTCATTATC+AGG + chr4_1:68795185-68795204 Msa0567450:intron 25.0%
!! GCATTTTACTTTCATTATCA+GGG + chr4_1:68795186-68795205 Msa0567450:intron 25.0%
TATTACAAGCACAATATCGA+TGG + chr4_1:68790128-68790147 Msa0567450:CDS 30.0%
TCAGAATTAATCATACTTGG+AGG - chr4_1:68790229-68790248 None:intergenic 30.0%
!! TGAATTGTGATGTTTTGGAT+TGG + chr4_1:68790309-68790328 Msa0567450:intron 30.0%
!! ACTTTTCTTGTTTGATCGAA+AGG + chr4_1:68790349-68790368 Msa0567450:CDS 30.0%
! ACGAGATACTTTAGAAAAGA+TGG + chr4_1:68790374-68790393 Msa0567450:CDS 30.0%
TTAGAAAAGATGGACATAAC+TGG + chr4_1:68790384-68790403 Msa0567450:CDS 30.0%
CAACCTAAGATAAAAACCTT+AGG + chr4_1:68790480-68790499 Msa0567450:intron 30.0%
TGTAACTGTAACAATACCTA+AGG - chr4_1:68790499-68790518 None:intergenic 30.0%
AATGTCATTGAAATCAATCC+TGG + chr4_1:68790578-68790597 Msa0567450:intron 30.0%
ATTGAAATCAATCCTGGAAT+AGG + chr4_1:68790584-68790603 Msa0567450:intron 30.0%
TTCAGTTTATTTCCTATTCC+AGG - chr4_1:68790599-68790618 None:intergenic 30.0%
! ATTTTCAAAGACGAACTTAC+TGG + chr4_1:68790738-68790757 Msa0567450:CDS 30.0%
ATTAAGCGATTATTCAGACA+AGG - chr4_1:68791056-68791075 None:intergenic 30.0%
TTTGTATTCGACATTGTTAC+AGG + chr4_1:68791419-68791438 Msa0567450:intron 30.0%
TTGTATTCGACATTGTTACA+GGG + chr4_1:68791420-68791439 Msa0567450:intron 30.0%
AAAGCTTCCATCAAATAACA+AGG - chr4_1:68791527-68791546 None:intergenic 30.0%
CTGGTCCTTAAAAGTAATAT+AGG + chr4_1:68791621-68791640 Msa0567450:intron 30.0%
TTGTATGATTGTTGATCACA+AGG - chr4_1:68791721-68791740 None:intergenic 30.0%
! AAATTTACCTTTGAGAGGTA+GGG - chr4_1:68792082-68792101 None:intergenic 30.0%
TGAAGAAATTTACCTTTGAG+AGG - chr4_1:68792087-68792106 None:intergenic 30.0%
TACATGATTGATCGAAAGAA+GGG - chr4_1:68792157-68792176 None:intergenic 30.0%
ATACATGATTGATCGAAAGA+AGG - chr4_1:68792158-68792177 None:intergenic 30.0%
TATTGCCATGTCATTAAAAG+AGG + chr4_1:68792175-68792194 Msa0567450:intron 30.0%
ATTGCCATGTCATTAAAAGA+GGG + chr4_1:68792176-68792195 Msa0567450:intron 30.0%
TACAATTAGTATGGCATGTA+AGG - chr4_1:68792369-68792388 None:intergenic 30.0%
TGAAATTGTGATAGATGATC+AGG + chr4_1:68792393-68792412 Msa0567450:CDS 30.0%
GATATCTTAGAAAATAAGGC+TGG + chr4_1:68792541-68792560 Msa0567450:CDS 30.0%
ATACTGTTTAGTAATGCTGA+TGG - chr4_1:68792668-68792687 None:intergenic 30.0%
! GAAATGTGTCATTCTGATAT+TGG + chr4_1:68792763-68792782 Msa0567450:intron 30.0%
! TCTTAATTTTCCTTGTGAAC+AGG + chr4_1:68793155-68793174 Msa0567450:intron 30.0%
GCTTAAAGAATTAAAACCAG+AGG - chr4_1:68793181-68793200 None:intergenic 30.0%
!! AGTTGATTTTCAACAATCCT+TGG + chr4_1:68793284-68793303 Msa0567450:CDS 30.0%
GACAAGTTAAAATCAGATCT+AGG + chr4_1:68793387-68793406 Msa0567450:CDS 30.0%
ATTTGAAGACTCGGAAATTA+AGG + chr4_1:68793722-68793741 Msa0567450:CDS 30.0%
CAAGTGCAGAATATCAAAAT+AGG - chr4_1:68793751-68793770 None:intergenic 30.0%
! TTTTCTCTCTTTTTCTTCCA+TGG - chr4_1:68793899-68793918 None:intergenic 30.0%
AAAGTGCACTATATTGATGA+CGG + chr4_1:68793924-68793943 Msa0567450:intron 30.0%
! ATTTTACAGGTTCTCATTTC+AGG + chr4_1:68793980-68793999 Msa0567450:intron 30.0%
ATGAAGCAGAAGATTGTAAA+TGG + chr4_1:68794023-68794042 Msa0567450:CDS 30.0%
TTAGAACATGTTACGTAGAA+AGG - chr4_1:68794142-68794161 None:intergenic 30.0%
TCTACGTAACATGTTCTAAT+AGG + chr4_1:68794143-68794162 Msa0567450:CDS 30.0%
CTTCTTGAGTATAATTGACT+CGG - chr4_1:68794201-68794220 None:intergenic 30.0%
AGTAAAATCAGTTCTTTGCT+TGG + chr4_1:68794358-68794377 Msa0567450:CDS 30.0%
TTCAGAAAACAACTGAAGAT+GGG + chr4_1:68794503-68794522 Msa0567450:CDS 30.0%
CACCTTCATCTAATACATTT+GGG - chr4_1:68794534-68794553 None:intergenic 30.0%
GTACTGTATAAATGTGAAAC+AGG + chr4_1:68794823-68794842 Msa0567450:intron 30.0%
!!! TAAGCATTTTAACTTCTGCT+AGG - chr4_1:68794849-68794868 None:intergenic 30.0%
CATAGGGTTGAAAAATGAAA+AGG + chr4_1:68794905-68794924 Msa0567450:intron 30.0%
! TTTTTCCATAACAAAAACGC+AGG - chr4_1:68794940-68794959 None:intergenic 30.0%
ATGCAAATTGCAAATTGCAA+AGG + chr4_1:68794978-68794997 Msa0567450:intron 30.0%
ATTCCAGAGAAAACAACAAA+AGG + chr4_1:68795546-68795565 Msa0567450:intron 30.0%
!!! ATTCCTTTTGTTGTTTTCTC+TGG - chr4_1:68795552-68795571 None:intergenic 30.0%
AGAATTTGGCAAATTTCAGC+CGG - chr4_1:68790160-68790179 None:intergenic 35.0%
!!! GTTTTGGATTGGTTGACAAT+AGG + chr4_1:68790320-68790339 Msa0567450:intron 35.0%
AACTGGAGGAAGAAAAAAGA+TGG + chr4_1:68790401-68790420 Msa0567450:CDS 35.0%
!! AACATATGATGTTTTCAGGC+TGG + chr4_1:68790665-68790684 Msa0567450:intron 35.0%
CAATACCAATATGTGTGAGA+TGG - chr4_1:68791152-68791171 None:intergenic 35.0%
! TTTTCTTCATTTGCTCTGCA+TGG - chr4_1:68791176-68791195 None:intergenic 35.0%
CACGATGATATGCTTTATGT+AGG - chr4_1:68791312-68791331 None:intergenic 35.0%
!! AAAGAAGTACTTCCAGAGAT+AGG - chr4_1:68791379-68791398 None:intergenic 35.0%
!!! TCTCTGGAAGTACTTCTTTT+AGG + chr4_1:68791380-68791399 Msa0567450:intron 35.0%
ACATCGTTCTAGTCCATTAT+CGG + chr4_1:68791452-68791471 Msa0567450:CDS 35.0%
! TTTTCAGTGCTTGGTAAATC+TGG + chr4_1:68791602-68791621 Msa0567450:intron 35.0%
!!! TGATCAAGTTTTTTCCTCCA+GGG + chr4_1:68791649-68791668 Msa0567450:intron 35.0%
AGATATGAAGAAGCTGAATC+AGG + chr4_1:68791803-68791822 Msa0567450:CDS 35.0%
ATTCAACAGCCATGCAAATT+CGG + chr4_1:68791981-68792000 Msa0567450:CDS 35.0%
AGTAGAAATCCGAATTTGCA+TGG - chr4_1:68791993-68792012 None:intergenic 35.0%
! GCTTTAATCTTTTGAACAGC+AGG - chr4_1:68792036-68792055 None:intergenic 35.0%
! AATTTACCTTTGAGAGGTAG+GGG - chr4_1:68792081-68792100 None:intergenic 35.0%
! GAAATTTACCTTTGAGAGGT+AGG - chr4_1:68792083-68792102 None:intergenic 35.0%
! TTAAAAGAGGGTGACTTTTG+AGG + chr4_1:68792188-68792207 Msa0567450:intron 35.0%
TTGTGATAGATGATCAGGAA+AGG + chr4_1:68792398-68792417 Msa0567450:CDS 35.0%
TGTGAACTCTCAAAAGTTCT+TGG + chr4_1:68792502-68792521 Msa0567450:CDS 35.0%
!! AAGTTCTTGGCTTTTCATCA+TGG + chr4_1:68792515-68792534 Msa0567450:CDS 35.0%
GTTTCAGGAAAAGACTGAAA+AGG - chr4_1:68792580-68792599 None:intergenic 35.0%
TGAAACAGAACCCAATAACA+CGG + chr4_1:68792594-68792613 Msa0567450:CDS 35.0%
!! CTATTGATTCCCGTGTTATT+GGG - chr4_1:68792607-68792626 None:intergenic 35.0%
!! ACTATTGATTCCCGTGTTAT+TGG - chr4_1:68792608-68792627 None:intergenic 35.0%
GGAATCAATAGTACTTCTCA+AGG + chr4_1:68792616-68792635 Msa0567450:CDS 35.0%
TTCTCAAGGATATGAGACAA+TGG + chr4_1:68792630-68792649 Msa0567450:CDS 35.0%
TCTCAAGGATATGAGACAAT+GGG + chr4_1:68792631-68792650 Msa0567450:CDS 35.0%
AACCATGTCTGCAAGTAAAA+TGG + chr4_1:68792809-68792828 Msa0567450:intron 35.0%
! ATCCATTTTACTTGCAGACA+TGG - chr4_1:68792814-68792833 None:intergenic 35.0%
TAGTTATAGTGACAATGAGC+AGG + chr4_1:68793251-68793270 Msa0567450:CDS 35.0%
TTTGTTGGTGTGTATGAAGA+AGG - chr4_1:68793317-68793336 None:intergenic 35.0%
TCATACACACCAACAAAACA+AGG + chr4_1:68793320-68793339 Msa0567450:CDS 35.0%
!!! GCATAAGAACCTTGTTTTGT+TGG - chr4_1:68793332-68793351 None:intergenic 35.0%
GACTCTATTAAGTGTATCTG+TGG + chr4_1:68793461-68793480 Msa0567450:CDS 35.0%
TATCCCAATAAGCACTAGAA+GGG - chr4_1:68793572-68793591 None:intergenic 35.0%
GATACAGTTGAAAGCGAAAA+TGG + chr4_1:68793588-68793607 Msa0567450:CDS 35.0%
AGCTGATCATAGCAAATAGA+TGG - chr4_1:68793669-68793688 None:intergenic 35.0%
! TCATTGATTATTCCCCAAGT+TGG + chr4_1:68793697-68793716 Msa0567450:CDS 35.0%
! CATTGATTATTCCCCAAGTT+GGG + chr4_1:68793698-68793717 Msa0567450:CDS 35.0%
AGTGAACATATGGTCAAAAC+TGG - chr4_1:68793774-68793793 None:intergenic 35.0%
ACAACAGTTCAGTGAACATA+TGG - chr4_1:68793784-68793803 None:intergenic 35.0%
TGTAAATGGTCATGCATGTT+CGG + chr4_1:68794037-68794056 Msa0567450:CDS 35.0%
TTGTTATACACCTCAACACA+AGG + chr4_1:68794105-68794124 Msa0567450:CDS 35.0%
TAATCGAATCTAAATCCCGA+GGG - chr4_1:68794312-68794331 None:intergenic 35.0%
AAATCAGTTCTTTGCTTGGT+AGG + chr4_1:68794362-68794381 Msa0567450:CDS 35.0%
AGTTGATCATGTACAAGTTC+TGG - chr4_1:68794442-68794461 None:intergenic 35.0%
!! CATCTTCAGTTGTTTTCTGA+AGG - chr4_1:68794504-68794523 None:intergenic 35.0%
CTTCAGAAAACAACTGAAGA+TGG + chr4_1:68794502-68794521 Msa0567450:CDS 35.0%
AAAACAACTGAAGATGGGAA+AGG + chr4_1:68794508-68794527 Msa0567450:CDS 35.0%
CCACCTTCATCTAATACATT+TGG - chr4_1:68794535-68794554 None:intergenic 35.0%
CCAAATGTATTAGATGAAGG+TGG + chr4_1:68794532-68794551 Msa0567450:CDS 35.0%
!! AGCAACAATTGTTGGTTCTA+AGG - chr4_1:68794602-68794621 None:intergenic 35.0%
TTAGAACCAACAATTGTTGC+TGG + chr4_1:68794601-68794620 Msa0567450:CDS 35.0%
ATTGTCAAAGTGTATCGTGT+TGG - chr4_1:68794747-68794766 None:intergenic 35.0%
GGGTTGAAAAATGAAAAGGT+TGG + chr4_1:68794909-68794928 Msa0567450:intron 35.0%
! AAGTACCTGCGTTTTTGTTA+TGG + chr4_1:68794932-68794951 Msa0567450:intron 35.0%
! GTCGTGTCTTTTAAATACAC+AGG - chr4_1:68795014-68795033 None:intergenic 35.0%
ACGACATCCCTAACAAATAA+AGG + chr4_1:68795029-68795048 Msa0567450:intron 35.0%
ACATCCCTAACAAATAAAGG+TGG + chr4_1:68795032-68795051 Msa0567450:intron 35.0%
! CTCACCACCTTTATTTGTTA+GGG - chr4_1:68795039-68795058 None:intergenic 35.0%
! TCTCACCACCTTTATTTGTT+AGG - chr4_1:68795040-68795059 None:intergenic 35.0%
TTACTTTCATTATCAGGGAG+AGG + chr4_1:68795191-68795210 Msa0567450:intron 35.0%
!!! GACTCTTTGTTTTGTTCCAA+CGG - chr4_1:68795410-68795429 None:intergenic 35.0%
!! AGCACTCATTGTTTTGTTCT+CGG - chr4_1:68795432-68795451 None:intergenic 35.0%
ACCTTCAATGAAAGATTCAC+TGG + chr4_1:68795462-68795481 Msa0567450:CDS 35.0%
GGAATACGATGTGACAAATT+TGG + chr4_1:68795567-68795586 Msa0567450:intron 35.0%
! ATACTTGGAGGCATATACGA+AGG - chr4_1:68790217-68790236 None:intergenic 40.0%
!! TTGGATTGGTTGACAATAGG+TGG + chr4_1:68790323-68790342 Msa0567450:intron 40.0%
GAAAAGATGGACATAACTGG+AGG + chr4_1:68790387-68790406 Msa0567450:CDS 40.0%
! CAGACAAGGCTTTAACATGT+AGG - chr4_1:68791042-68791061 None:intergenic 40.0%
! AGGCAGAAACTTTGAAGGAA+GGG - chr4_1:68791114-68791133 None:intergenic 40.0%
! AAGGCAGAAACTTTGAAGGA+AGG - chr4_1:68791115-68791134 None:intergenic 40.0%
TGTCTCCATCTCACACATAT+TGG + chr4_1:68791144-68791163 Msa0567450:intron 40.0%
TCATCCTCAAGCAAGAACAA+AGG - chr4_1:68791236-68791255 None:intergenic 40.0%
!! TTTTTGGTGGTTCCTATCTC+TGG + chr4_1:68791364-68791383 Msa0567450:intron 40.0%
CATCGTTCTAGTCCATTATC+GGG + chr4_1:68791453-68791472 Msa0567450:CDS 40.0%
ATACCTTCACTTCCCGATAA+TGG - chr4_1:68791468-68791487 None:intergenic 40.0%
!!! CTGATCAAGTTTTTTCCTCC+AGG + chr4_1:68791648-68791667 Msa0567450:intron 40.0%
GGCACATATTAAAGTTGCCT+TGG - chr4_1:68791677-68791696 None:intergenic 40.0%
TTTACCGTCTAGCATAACAG+TGG + chr4_1:68791771-68791790 Msa0567450:intron 40.0%
TTGACCACTGTTATGCTAGA+CGG - chr4_1:68791778-68791797 None:intergenic 40.0%
GTAGGGGACAGTTAGAATAA+GGG - chr4_1:68792065-68792084 None:intergenic 40.0%
! GTCACCCTCTTTTAATGACA+TGG - chr4_1:68792183-68792202 None:intergenic 40.0%
CAAACTTAGTGACGTAGCAA+TGG + chr4_1:68792215-68792234 Msa0567450:intron 40.0%
!! ATTCCGCAAATGTTGGTCTT+TGG + chr4_1:68792327-68792346 Msa0567450:intron 40.0%
GATCCAAAGACCAACATTTG+CGG - chr4_1:68792333-68792352 None:intergenic 40.0%
!! CAAATGTTGGTCTTTGGATC+AGG + chr4_1:68792333-68792352 Msa0567450:intron 40.0%
AGTAAGATATCATCCACCTG+AGG - chr4_1:68792436-68792455 None:intergenic 40.0%
! GTGTTATTGGGTTCTGTTTC+AGG - chr4_1:68792595-68792614 None:intergenic 40.0%
GAAACAGAACCCAATAACAC+GGG + chr4_1:68792595-68792614 Msa0567450:CDS 40.0%
CTCAAGGATATGAGACAATG+GGG + chr4_1:68792632-68792651 Msa0567450:CDS 40.0%
TGAAGGAAATTGGCAGGTAT+GGG + chr4_1:68792717-68792736 Msa0567450:intron 40.0%
GACTCACTACAAAGTGATGT+TGG + chr4_1:68792956-68792975 Msa0567450:intron 40.0%
ATTCTTTAAGCGCATCCACA+TGG + chr4_1:68793190-68793209 Msa0567450:CDS 40.0%
CCTGAATAGGCACTATCTTT+GGG - chr4_1:68793216-68793235 None:intergenic 40.0%
ATGAAGAAGGAACTGTTCCA+AGG - chr4_1:68793304-68793323 None:intergenic 40.0%
GAGTGTCTTCTATTCCAACT+AGG - chr4_1:68793425-68793444 None:intergenic 40.0%
CGATGGATGAGTAAAGAACT+AGG + chr4_1:68793519-68793538 Msa0567450:CDS 40.0%
ATTCCCCTTCTAGTGCTTAT+TGG + chr4_1:68793565-68793584 Msa0567450:CDS 40.0%
TTCCCCTTCTAGTGCTTATT+GGG + chr4_1:68793566-68793585 Msa0567450:CDS 40.0%
ATCCCAATAAGCACTAGAAG+GGG - chr4_1:68793571-68793590 None:intergenic 40.0%
GTATCCCAATAAGCACTAGA+AGG - chr4_1:68793573-68793592 None:intergenic 40.0%
AGTCTTCAAATGCCCAACTT+GGG - chr4_1:68793713-68793732 None:intergenic 40.0%
AAGTTGGGCATTTGAAGACT+CGG + chr4_1:68793713-68793732 Msa0567450:CDS 40.0%
ACAACAGAGAACACTATTCC+TGG - chr4_1:68794089-68794108 None:intergenic 40.0%
CTAATCGAATCTAAATCCCG+AGG - chr4_1:68794313-68794332 None:intergenic 40.0%
GGCCCAAATGTATTAGATGA+AGG + chr4_1:68794529-68794548 Msa0567450:CDS 40.0%
! CTTCATTTTGCAGCCTTTCT+TGG + chr4_1:68794565-68794584 Msa0567450:CDS 40.0%
TTCACACCAGCAACAATTGT+TGG - chr4_1:68794610-68794629 None:intergenic 40.0%
GTGAACTTTCGCGATGTAAA+TGG + chr4_1:68794631-68794650 Msa0567450:CDS 40.0%
ACTTTCGCGATGTAAATGGA+TGG + chr4_1:68794635-68794654 Msa0567450:CDS 40.0%
TGGGCTATTTAAGCATACCT+CGG + chr4_1:68795089-68795108 Msa0567450:intron 40.0%
ATTTAAGCATACCTCGGGAA+AGG + chr4_1:68795095-68795114 Msa0567450:intron 40.0%
! TGGACTCTTTTCATGGGAAA+TGG - chr4_1:68795127-68795146 None:intergenic 40.0%
! TCACGTTGGACTCTTTTCAT+GGG - chr4_1:68795133-68795152 None:intergenic 40.0%
AAAAATCACGAGTCTCACGT+TGG - chr4_1:68795147-68795166 None:intergenic 40.0%
TTGCTTCCCTCATATCTCTT+GGG + chr4_1:68795218-68795237 Msa0567450:CDS 40.0%
TTCTACCAGAAGGATGTTGT+GGG - chr4_1:68795273-68795292 None:intergenic 40.0%
AATGGACACAAAGGAATTGC+TGG + chr4_1:68795316-68795335 Msa0567450:CDS 40.0%
AGAAACATGAGAGAAACCGT+TGG + chr4_1:68795391-68795410 Msa0567450:CDS 40.0%
GCCAGTGAATCTTTCATTGA+AGG - chr4_1:68795466-68795485 None:intergenic 40.0%
ACAATATCGATGGCTACGTC+CGG + chr4_1:68790138-68790157 Msa0567450:CDS 45.0%
ACGAACTTACTGGATGCTTG+AGG + chr4_1:68790748-68790767 Msa0567450:CDS 45.0%
AGGCAAGGCAGAAACTTTGA+AGG - chr4_1:68791119-68791138 None:intergenic 45.0%
GATGCCTTTGTTCTTGCTTG+AGG + chr4_1:68791229-68791248 Msa0567450:intron 45.0%
AGTCCATTATCGGGAAGTGA+AGG + chr4_1:68791462-68791481 Msa0567450:CDS 45.0%
!!! TTTTTTCCTCCAGGGAACCA+AGG + chr4_1:68791657-68791676 Msa0567450:intron 45.0%
TTAAAGTTGCCTTGGTTCCC+TGG - chr4_1:68791669-68791688 None:intergenic 45.0%
CAAAGTTATGCCCAACACAG+AGG + chr4_1:68791738-68791757 Msa0567450:intron 45.0%
GGTAGGGGACAGTTAGAATA+AGG - chr4_1:68792066-68792085 None:intergenic 45.0%
TTTATACCAGCTGACGCTGA+AGG + chr4_1:68792700-68792719 Msa0567450:CDS 45.0%
CTGAAGGAAATTGGCAGGTA+TGG + chr4_1:68792716-68792735 Msa0567450:intron 45.0%
CCCAAAGATAGTGCCTATTC+AGG + chr4_1:68793213-68793232 Msa0567450:CDS 45.0%
GCCTGAATAGGCACTATCTT+TGG - chr4_1:68793217-68793236 None:intergenic 45.0%
GGGATCGATAAAAGCCTAGT+TGG + chr4_1:68793408-68793427 Msa0567450:CDS 45.0%
AAGTGTATCTGTGGCAGAAG+AGG + chr4_1:68793470-68793489 Msa0567450:CDS 45.0%
AGTGTATCTGTGGCAGAAGA+GGG + chr4_1:68793471-68793490 Msa0567450:CDS 45.0%
AGCTCGACAGTTTCAATCGA+TGG + chr4_1:68793502-68793521 Msa0567450:CDS 45.0%
CAGTACAACTATTCCTTCCC+AGG + chr4_1:68793617-68793636 Msa0567450:CDS 45.0%
ATAGTTCTCCAAGTGCACCT+GGG - chr4_1:68793637-68793656 None:intergenic 45.0%
GCACTTGGAGAACTATGTAC+TGG + chr4_1:68793641-68793660 Msa0567450:CDS 45.0%
GTCTTCAAATGCCCAACTTG+GGG - chr4_1:68793712-68793731 None:intergenic 45.0%
GAGTCTTCAAATGCCCAACT+TGG - chr4_1:68793714-68793733 None:intergenic 45.0%
CTATTCCTGGTTATCTCTGC+TGG - chr4_1:68794076-68794095 None:intergenic 45.0%
TATACACCTCAACACAAGGC+TGG + chr4_1:68794109-68794128 Msa0567450:CDS 45.0%
ACTCAAGAAGTCAACACTGC+CGG + chr4_1:68794211-68794230 Msa0567450:CDS 45.0%
! ATTGCTGCTTCTGATCTCAC+CGG - chr4_1:68794233-68794252 None:intergenic 45.0%
CAGTTCTTTGCTTGGTAGGA+AGG + chr4_1:68794366-68794385 Msa0567450:CDS 45.0%
TCTTTGCTTGGTAGGAAGGA+CGG + chr4_1:68794370-68794389 Msa0567450:CDS 45.0%
GTATTAGATGAAGGTGGCCA+AGG + chr4_1:68794538-68794557 Msa0567450:CDS 45.0%
CTGCAAAATGAAGCACACCT+TGG - chr4_1:68794558-68794577 None:intergenic 45.0%
AGCCTTTCTTGGCTACGATT+GGG + chr4_1:68794576-68794595 Msa0567450:CDS 45.0%
!! ATGGATGGACTGCTCTTCAT+TGG + chr4_1:68794650-68794669 Msa0567450:CDS 45.0%
!! TGGATGGACTGCTCTTCATT+GGG + chr4_1:68794651-68794670 Msa0567450:CDS 45.0%
GGGCTATTTAAGCATACCTC+GGG + chr4_1:68795090-68795109 Msa0567450:intron 45.0%
! CTCACGTTGGACTCTTTTCA+TGG - chr4_1:68795134-68795153 None:intergenic 45.0%
GTTGCTTCCCTCATATCTCT+TGG + chr4_1:68795217-68795236 Msa0567450:CDS 45.0%
TGCTTCCCTCATATCTCTTG+GGG + chr4_1:68795219-68795238 Msa0567450:CDS 45.0%
GTTCTACCAGAAGGATGTTG+TGG - chr4_1:68795274-68795293 None:intergenic 45.0%
TCCATTTGCAGAAGCTAGGT+CGG - chr4_1:68795302-68795321 None:intergenic 45.0%
TGTGTCCATTTGCAGAAGCT+AGG - chr4_1:68795306-68795325 None:intergenic 45.0%
GCTTCTGCAAATGGACACAA+AGG + chr4_1:68795307-68795326 Msa0567450:CDS 45.0%
!! AAAAAAGTTATTAAAAAAAA+TGG + chr4_1:68793870-68793889 Msa0567450:intron 5.0%
GGAAGCTCATGAGAGACTCA+AGG + chr4_1:68790436-68790455 Msa0567450:CDS 50.0%
TTACACTGCTACTACGCCCA+TGG + chr4_1:68790701-68790720 Msa0567450:CDS 50.0%
TGTGAGATGGAGACAAAGCG+AGG - chr4_1:68791139-68791158 None:intergenic 50.0%
GAAGTCTCTGCCTCTGTGTT+GGG - chr4_1:68791751-68791770 None:intergenic 50.0%
AGAAGTCTCTGCCTCTGTGT+TGG - chr4_1:68791752-68791771 None:intergenic 50.0%
AACTGTCCCCTACCTCTCAA+AGG + chr4_1:68792072-68792091 Msa0567450:CDS 50.0%
AAGGTTGCCTGTCATTCCTC+AGG + chr4_1:68792417-68792436 Msa0567450:CDS 50.0%
TCATCCACCTGAGGAATGAC+AGG - chr4_1:68792427-68792446 None:intergenic 50.0%
CAATTTCCTTCAGCGTCAGC+TGG - chr4_1:68792709-68792728 None:intergenic 50.0%
CAGCTGACGCTGAAGGAAAT+TGG + chr4_1:68792707-68792726 Msa0567450:CDS 50.0%
TGACGCTGAAGGAAATTGGC+AGG + chr4_1:68792711-68792730 Msa0567450:CDS 50.0%
TTTCCTTGTGAACAGGCCTC+TGG + chr4_1:68793162-68793181 Msa0567450:intron 50.0%
AAACCAGAGGCCTGTTCACA+AGG - chr4_1:68793168-68793187 None:intergenic 50.0%
CTCACACGATGAGCCTGAAT+AGG - chr4_1:68793229-68793248 None:intergenic 50.0%
CTATTCAGGCTCATCGTGTG+AGG + chr4_1:68793227-68793246 Msa0567450:CDS 50.0%
TATTCCTTCCCAGGTGCACT+TGG + chr4_1:68793626-68793645 Msa0567450:CDS 50.0%
CATAGTTCTCCAAGTGCACC+TGG - chr4_1:68793638-68793657 None:intergenic 50.0%
AAGTGCCAGCAGAGATAACC+AGG + chr4_1:68794068-68794087 Msa0567450:CDS 50.0%
TTGGTAGGAAGGACGGTGAA+TGG + chr4_1:68794377-68794396 Msa0567450:CDS 50.0%
TGGTAGGAAGGACGGTGAAT+GGG + chr4_1:68794378-68794397 Msa0567450:CDS 50.0%
CAGCCTTTCTTGGCTACGAT+TGG + chr4_1:68794575-68794594 Msa0567450:CDS 50.0%
! CTTCATTGGGCAGCGTTTTG+TGG + chr4_1:68794664-68794683 Msa0567450:CDS 50.0%
TGCTGCCCCAAGAGATATGA+GGG - chr4_1:68795227-68795246 None:intergenic 50.0%
CATGGATCAGTAAGTGCTCC+TGG - chr4_1:68795250-68795269 None:intergenic 50.0%
GATGGAGACAAAGCGAGGCA+AGG - chr4_1:68791134-68791153 None:intergenic 55.0%
AAGTTGCCTTGGTTCCCTGG+AGG - chr4_1:68791666-68791685 None:intergenic 55.0%
GTTGCCTGTCATTCCTCAGG+TGG + chr4_1:68792420-68792439 Msa0567450:CDS 55.0%
GGCACTATCTTTGGGCCATG+TGG - chr4_1:68793208-68793227 None:intergenic 55.0%
TTCTCCAAGTGCACCTGGGA+AGG - chr4_1:68793633-68793652 None:intergenic 55.0%
CACCTCAACACAAGGCTGGA+CGG + chr4_1:68794113-68794132 Msa0567450:CDS 55.0%
ACCTCAACACAAGGCTGGAC+GGG + chr4_1:68794114-68794133 Msa0567450:CDS 55.0%
CCGAGGGAAGTCATGCTCTT+GGG - chr4_1:68794296-68794315 None:intergenic 55.0%
! CCCAAGAGCATGACTTCCCT+CGG + chr4_1:68794293-68794312 Msa0567450:CDS 55.0%
! CCAAGAGCATGACTTCCCTC+GGG + chr4_1:68794294-68794313 Msa0567450:CDS 55.0%
GGCCCAATCGTAGCCAAGAA+AGG - chr4_1:68794581-68794600 None:intergenic 55.0%
! ATTGGGCAGCGTTTTGTGGC+AGG + chr4_1:68794668-68794687 Msa0567450:CDS 55.0%
GTGCTGCCCCAAGAGATATG+AGG - chr4_1:68795228-68795247 None:intergenic 55.0%
ATATCTCTTGGGGCAGCACC+AGG + chr4_1:68795229-68795248 Msa0567450:CDS 55.0%
CCAGAAGGATGTTGTGGGCA+TGG - chr4_1:68795268-68795287 None:intergenic 55.0%
CCATGCCCACAACATCCTTC+TGG + chr4_1:68795265-68795284 Msa0567450:CDS 55.0%
TCGGCTGGTGTTCTACCAGA+AGG - chr4_1:68795283-68795302 None:intergenic 55.0%
TTTGCAGAAGCTAGGTCGGC+TGG - chr4_1:68795298-68795317 None:intergenic 55.0%
GCCGACCTAGCTTCTGCAAA+TGG + chr4_1:68795298-68795317 Msa0567450:CDS 55.0%
! ACCCGTCCAGCCTTGTGTTG+AGG - chr4_1:68794118-68794137 None:intergenic 60.0%
CCCGAGGGAAGTCATGCTCT+TGG - chr4_1:68794297-68794316 None:intergenic 60.0%
AATGGCTCTCGCCTTTCCCG+AGG - chr4_1:68795109-68795128 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 68790079 68795742 68790079 ID=Msa0567450;Name=Msa0567450
chr4_1 mRNA 68790079 68795742 68790079 ID=Msa0567450-mRNA-1;Parent=Msa0567450;Name=Msa0567450-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.6|0.45|0.90|1|1|11|0|845
chr4_1 exon 68790079 68790232 68790079 ID=Msa0567450-mRNA-1:exon:22811;Parent=Msa0567450-mRNA-1
chr4_1 exon 68790342 68790457 68790342 ID=Msa0567450-mRNA-1:exon:22812;Parent=Msa0567450-mRNA-1
chr4_1 exon 68790683 68790771 68790683 ID=Msa0567450-mRNA-1:exon:22813;Parent=Msa0567450-mRNA-1
chr4_1 exon 68791441 68791483 68791441 ID=Msa0567450-mRNA-1:exon:22814;Parent=Msa0567450-mRNA-1
chr4_1 exon 68791783 68791824 68791783 ID=Msa0567450-mRNA-1:exon:22815;Parent=Msa0567450-mRNA-1
chr4_1 exon 68791980 68792093 68791980 ID=Msa0567450-mRNA-1:exon:22816;Parent=Msa0567450-mRNA-1
chr4_1 exon 68792355 68792732 68792355 ID=Msa0567450-mRNA-1:exon:22817;Parent=Msa0567450-mRNA-1
chr4_1 exon 68793177 68793743 68793177 ID=Msa0567450-mRNA-1:exon:22818;Parent=Msa0567450-mRNA-1
chr4_1 exon 68793989 68794689 68793989 ID=Msa0567450-mRNA-1:exon:22819;Parent=Msa0567450-mRNA-1
chr4_1 exon 68795207 68795528 68795207 ID=Msa0567450-mRNA-1:exon:22820;Parent=Msa0567450-mRNA-1
chr4_1 exon 68795731 68795742 68795731 ID=Msa0567450-mRNA-1:exon:22821;Parent=Msa0567450-mRNA-1
chr4_1 CDS 68790079 68790232 68790079 ID=Msa0567450-mRNA-1:cds;Parent=Msa0567450-mRNA-1
chr4_1 CDS 68790342 68790457 68790342 ID=Msa0567450-mRNA-1:cds;Parent=Msa0567450-mRNA-1
chr4_1 CDS 68790683 68790771 68790683 ID=Msa0567450-mRNA-1:cds;Parent=Msa0567450-mRNA-1
chr4_1 CDS 68791441 68791483 68791441 ID=Msa0567450-mRNA-1:cds;Parent=Msa0567450-mRNA-1
chr4_1 CDS 68791783 68791824 68791783 ID=Msa0567450-mRNA-1:cds;Parent=Msa0567450-mRNA-1
chr4_1 CDS 68791980 68792093 68791980 ID=Msa0567450-mRNA-1:cds;Parent=Msa0567450-mRNA-1
chr4_1 CDS 68792355 68792732 68792355 ID=Msa0567450-mRNA-1:cds;Parent=Msa0567450-mRNA-1
chr4_1 CDS 68793177 68793743 68793177 ID=Msa0567450-mRNA-1:cds;Parent=Msa0567450-mRNA-1
chr4_1 CDS 68793989 68794689 68793989 ID=Msa0567450-mRNA-1:cds;Parent=Msa0567450-mRNA-1
chr4_1 CDS 68795207 68795528 68795207 ID=Msa0567450-mRNA-1:cds;Parent=Msa0567450-mRNA-1
chr4_1 CDS 68795731 68795742 68795731 ID=Msa0567450-mRNA-1:cds;Parent=Msa0567450-mRNA-1
Gene Sequence

>Msa0567450

ATGTCTAATTCATATACTATGATTGCCACAACAGATATTGAAGAAATTTTATTACAAGCACAATATCGATGGCTACGTCCGGCTGAAATTTGCCAAATTCTCACTAACTATAACAGCTTTCAGATTTCTTCGCAACCTTCGTATATGCCTCCAAGTGGTTCACTTTTCTTGTTTGATCGAAAGGTGACGAGATACTTTAGAAAAGATGGACATAACTGGAGGAAGAAAAAAGATGGAAAAACTGTTAGGGAAGCTCATGAGAGACTCAAGGCTGGAAGTGTAGAAGTATTACACTGCTACTACGCCCATGGAGAAGAAAATGATAATTTTCAAAGACGAACTTACTGGATGCTTGAGGAGGAACTCTCACACATCGTTCTAGTCCATTATCGGGAAGTGAAGCATAACAGTGGTCAAGCATCAGATATGAAGAAGCTGAATCAGCATTCAACAGCCATGCAAATTCGGATTTCTACTCTTTTCTTGAGCTGCAACAGCCTGCTGTTCAAAAGATTAAAGCTCAACTCCCTTATTCTAACTGTCCCCTACCTCTCAAAGGCAAGATCTTACCTTACATGCCATACTAATTGTAAAATTGAAATTGTGATAGATGATCAGGAAAGGTTGCCTGTCATTCCTCAGGTGGATGATATCTTACTCAGTCAAGCTAATGATACCAAATACATTAACAATGTTGGATTGACATGTGAACTCTCAAAAGTTCTTGGCTTTTCATCATGGCAAGATATCTTAGAAAATAAGGCTGGAAGTCATAATGTGCCTTTTCAGTCTTTTCCTGAAACAGAACCCAATAACACGGGAATCAATAGTACTTCTCAAGGATATGAGACAATGGGGCAACATTTAACCATCAGCATTACTAAACAGTATGATAATAGAAGTTTTATACCAGCTGACGCTGAAGGAAATTGGCAGGCCTCTGGTTTTAATTCTTTAAGCGCATCCACATGGCCCAAAGATAGTGCCTATTCAGGCTCATCGTGTGAGGTTAGTTATAGTGACAATGAGCAGGAAGTTAATGAAGTTGATTTTCAACAATCCTTGGAACAGTTCCTTCTTCATACACACCAACAAAACAAGGTTCTTATGCAAAATAGCCCTCATGAAATACTTTTAAAAGCAGAAGACAAGTTAAAATCAGATCTAGGGATCGATAAAAGCCTAGTTGGAATAGAAGACACTCATTTCACTTCAAAGAAGACTCTATTAAGTGTATCTGTGGCAGAAGAGGGCTTGAAGAAGCTCGACAGTTTCAATCGATGGATGAGTAAAGAACTAGGCGATGTCGAAGAATCAAGCAAGCATTCCCCTTCTAGTGCTTATTGGGATACAGTTGAAAGCGAAAATGGTGTTGACAGTACAACTATTCCTTCCCAGGTGCACTTGGAGAACTATGTACTGGATCCATCTATTTGCTATGATCAGCTTTTTAGCATCATTGATTATTCCCCAAGTTGGGCATTTGAAGACTCGGAAATTAAGGTTCTCATTTCAGGACGATTCTTAAAGAGTCAACATGAAGCAGAAGATTGTAAATGGTCATGCATGTTCGGCGAGATAGAAGTGCCAGCAGAGATAACCAGGAATAGTGTTCTCTGTTGTTATACACCTCAACACAAGGCTGGACGGGTTCCTTTCTACGTAACATGTTCTAATAGGTTAGCATGTAGTGAAGTGCGCGAATTCGATTTCCGAGTCAATTATACTCAAGAAGTCAACACTGCCGGTGAGATCAGAAGCAGCAATACTTATGATACTTTTAATAAACGATTTGGAGAATTGTTGTCCCAAGAGCATGACTTCCCTCGGGATTTAGATTCGATTAGTGTGAATGAGAAATCTCAACTGAGAAGTAAAATCAGTTCTTTGCTTGGTAGGAAGGACGGTGAATGGGACGAACTACTTAAATTTACTCTAGACAAAGATTTTTCTCCAGAACTTGTACATGATCAACTGCTTCAAAATCTTCTAAAAGATAAACTACATGCATGGCTCCTTCAGAAAACAACTGAAGATGGGAAAGGCCCAAATGTATTAGATGAAGGTGGCCAAGGTGTGCTTCATTTTGCAGCCTTTCTTGGCTACGATTGGGCCTTAGAACCAACAATTGTTGCTGGTGTGAATGTGAACTTTCGCGATGTAAATGGATGGACTGCTCTTCATTGGGCAGCGTTTTGTGGCAGGGAGAGGACAGTTGCTTCCCTCATATCTCTTGGGGCAGCACCAGGAGCACTTACTGATCCATGCCCACAACATCCTTCTGGTAGAACACCAGCCGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCTGGTTATCTTGCAGAATCTTTCTTAAGCTCACAACTCAAGTCTCTTGATTTGAAAAGAAACATGAGAGAAACCGTTGGAACAAAACAAAGAGTCCGAGAACAAAACAATGAGTGCTTCTCACATGAACCTTCAATGAAAGATTCACTGGCTGCAGTGTGCAATGCAACTCAAGCTGCTGCTCGTATTCATCAAACAATCGCCTGA
Protein sequence

>Msa0567450

MSNSYTMIATTDIEEILLQAQYRWLRPAEICQILTNYNSFQISSQPSYMPPSGSLFLFDRKVTRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEENDNFQRRTYWMLEEELSHIVLVHYREVKHNSGQASDMKKLNQHSTAMQIRISTLFLSCNSLLFKRLKLNSLILTVPYLSKARSYLTCHTNCKIEIVIDDQERLPVIPQVDDILLSQANDTKYINNVGLTCELSKVLGFSSWQDILENKAGSHNVPFQSFPETEPNNTGINSTSQGYETMGQHLTISITKQYDNRSFIPADAEGNWQASGFNSLSASTWPKDSAYSGSSCEVSYSDNEQEVNEVDFQQSLEQFLLHTHQQNKVLMQNSPHEILLKAEDKLKSDLGIDKSLVGIEDTHFTSKKTLLSVSVAEEGLKKLDSFNRWMSKELGDVEESSKHSPSSAYWDTVESENGVDSTTIPSQVHLENYVLDPSICYDQLFSIIDYSPSWAFEDSEIKVLISGRFLKSQHEAEDCKWSCMFGEIEVPAEITRNSVLCCYTPQHKAGRVPFYVTCSNRLACSEVREFDFRVNYTQEVNTAGEIRSSNTYDTFNKRFGELLSQEHDFPRDLDSISVNEKSQLRSKISSLLGRKDGEWDELLKFTLDKDFSPELVHDQLLQNLLKDKLHAWLLQKTTEDGKGPNVLDEGGQGVLHFAAFLGYDWALEPTIVAGVNVNFRDVNGWTALHWAAFCGRERTVASLISLGAAPGALTDPCPQHPSGRTPADLASANGHKGIAGYLAESFLSSQLKSLDLKRNMRETVGTKQRVREQNNECFSHEPSMKDSLAAVCNATQAAARIHQTIA*