AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0437250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437250 MtrunA17_Chr8g0341741 84.502 271 16 2 1 245 1 271 5.08e-163 460
Msa0437250 MtrunA17_Chr8g0341741 67.901 243 54 3 232 451 33 274 2.19e-105 314
Msa0437250 MtrunA17_Chr8g0341731 80.370 270 27 2 1 244 1 270 2.61e-156 443
Msa0437250 MtrunA17_Chr8g0341731 72.016 243 44 3 232 451 33 274 4.89e-114 336
Msa0437250 MtrunA17_Chr8g0341701 76.753 271 36 3 1 245 1 270 8.34e-147 419
Msa0437250 MtrunA17_Chr8g0341701 59.170 289 81 6 184 451 1 273 4.94e-104 310
Msa0437250 MtrunA17_Chr8g0341721 74.254 268 38 4 1 238 1 267 4.05e-140 402
Msa0437250 MtrunA17_Chr8g0341721 53.818 275 90 6 184 437 1 259 2.55e-88 270
Msa0437250 MtrunA17_Chr2g0330511 63.670 267 69 4 4 244 3 267 1.65e-117 345
Msa0437250 MtrunA17_Chr2g0330511 58.744 223 73 2 246 449 47 269 2.37e-82 254
Msa0437250 MtrunA17_Chr2g0309111 62.172 267 74 3 4 244 47 312 8.05e-113 334
Msa0437250 MtrunA17_Chr2g0309111 58.222 225 72 2 246 449 91 314 1.69e-78 246
Msa0437250 MtrunA17_Chr2g0330491 49.077 271 107 4 5 245 4 273 3.78e-89 272
Msa0437250 MtrunA17_Chr2g0330491 40.000 285 128 8 191 449 7 274 1.41e-56 188
Msa0437250 MtrunA17_Chr8g0389271 51.477 237 95 6 5 224 2 235 9.26e-79 244
Msa0437250 MtrunA17_Chr8g0389271 45.370 216 84 4 229 416 27 236 2.27e-53 179
Msa0437250 MtrunA17_Chr2g0330501 40.000 75 41 1 379 449 2 76 1.14e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437250 AT1G17710.1 64.286 238 69 3 2 224 4 240 5.53e-109 323
Msa0437250 AT1G17710.1 47.863 234 95 5 232 438 35 268 4.66e-65 211
Msa0437250 AT1G73010.1 64.317 227 66 2 5 216 14 240 1.57e-105 315
Msa0437250 AT1G73010.1 47.012 251 101 5 232 450 42 292 1.17e-61 202
Msa0437250 AT1G17710.2 57.949 195 66 3 45 224 15 208 7.42e-75 235
Msa0437250 AT1G17710.2 49.772 219 84 4 246 438 18 236 6.30e-65 209
Msa0437250 AT4G29530.1 47.034 236 109 3 5 225 4 238 9.31e-74 232
Msa0437250 AT4G29530.1 45.226 199 88 2 246 423 47 245 4.79e-50 171
Msa0437250 AT4G29530.2 44.271 192 91 3 49 225 37 227 7.56e-51 172
Msa0437250 AT4G29530.2 45.226 199 88 2 246 423 36 234 2.02e-50 171

Find 91 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGAAAGTGGTTTCAAAAT+TGG 0.194557 3_2:-91417314 None:intergenic
CACAAGAAATAGAAGCTAAA+TGG 0.195221 3_2:-91417340 None:intergenic
ATTAAATCAGCTCATGCATT+AGG 0.281574 3_2:+91422336 Msa0437250:CDS
ACCTTACCATGATTTCAATA+AGG 0.291344 3_2:+91422497 Msa0437250:CDS
AATTGGTTGATTGATGAATT+AGG 0.292483 3_2:+91417493 Msa0437250:CDS
ATTAAATCAGCACATGCATT+AGG 0.305553 3_2:+91417786 Msa0437250:CDS
TTGATTGTGACAGTGATAAT+TGG 0.327162 3_2:+91417476 Msa0437250:CDS
CTTGTTAAGGCTGAAATTCA+TGG 0.329750 3_2:+91418354 Msa0437250:CDS
CTTGTTAAGGCTGAAATTCA+TGG 0.329750 3_2:+91423235 Msa0437250:CDS
GGTATTATTCTGTGATGAAT+TGG 0.334976 3_2:-91417759 None:intergenic
CTAAAAGTTTATGGTCCAAC+TGG 0.342187 3_2:-91423403 None:intergenic
ATATATACCTTGCACATGTT+TGG 0.342939 3_2:-91417999 None:intergenic
ATATATACCTTGCACATGTT+TGG 0.342939 3_2:-91422549 None:intergenic
GAGATTATTGCCCTAGTTTG+AGG 0.350840 3_2:+91423140 Msa0437250:CDS
GCATGAGCTGATTTAATTGC+AGG 0.352484 3_2:-91422330 None:intergenic
TCCTTCTTGATTAACATAAC+CGG 0.353869 3_2:-91417910 None:intergenic
ATGATGGAATTTCATTCAAA+TGG 0.371442 3_2:+91422246 Msa0437250:CDS
GGTCCAACTGGGAGAGCTTT+AGG 0.371582 3_2:-91423391 None:intergenic
CAAAGACCCTTCACTTGTTA+AGG 0.372055 3_2:+91418341 Msa0437250:CDS
CAAAGACCCTTCACTTGTTA+AGG 0.372055 3_2:+91423222 Msa0437250:CDS
GGTATTATTCTGTGATGAAT+TGG 0.376960 3_2:-91422309 None:intergenic
ATGATGGAGTTTCATTCAAA+TGG 0.387824 3_2:+91417696 Msa0437250:CDS
ATCTACCTTGGTGATGGTGC+TGG 0.412159 3_2:+91418237 Msa0437250:CDS
ATCTACCTTGGTGATGGTGC+TGG 0.412159 3_2:+91423118 Msa0437250:CDS
CCTTCTTGATTAACATAACC+AGG 0.424126 3_2:-91422459 None:intergenic
CTCTCTTTAAACCTCAAACT+AGG 0.425965 3_2:-91423151 None:intergenic
TTTATAGTAAGAGAAGGTGT+TGG 0.434123 3_2:-91417233 None:intergenic
ACAAGAAATAGAAGCTAAAT+GGG 0.435519 3_2:-91417339 None:intergenic
ATGCATTAGGGTGTGATTTG+AGG 0.436567 3_2:+91422349 Msa0437250:CDS
ATGCATTAGGGTGTGATTTG+AGG 0.444003 3_2:+91417799 Msa0437250:CDS
GTGAAGCCTTATTGAAATCA+TGG 0.446007 3_2:-91422503 None:intergenic
CCTTCTTGATTAACATAACC+GGG 0.454827 3_2:-91417909 None:intergenic
TTAAATCAGCTCATGCATTA+GGG 0.459467 3_2:+91422337 Msa0437250:CDS
TTAAATCAGCACATGCATTA+GGG 0.465493 3_2:+91417787 Msa0437250:CDS
TTGGTGTGATGGAGAAGAAT+TGG 0.468537 3_2:+91418377 Msa0437250:CDS
GTGAAGTCTTACTGAAATCA+TGG 0.470190 3_2:-91417953 None:intergenic
TTAGGCAAAGATACAAGAAC+TGG 0.474583 3_2:-91418492 None:intergenic
CACAGTGGAAAATTCTTCCT+TGG 0.478175 3_2:-91423187 None:intergenic
AACAAAAGGTTTATCTACCT+TGG 0.483833 3_2:+91423106 Msa0437250:intron
CAAGGATTCGAGCACATGAA+TGG 0.485161 3_2:-91423368 None:intergenic
ATCACTGTCACAATCAATGA+TGG 0.486684 3_2:-91417470 None:intergenic
CCCGGTTATGTTAATCAAGA+AGG 0.488748 3_2:+91417909 Msa0437250:CDS
TTATAGTAAGAGAAGGTGTT+GGG 0.491204 3_2:-91417232 None:intergenic
AACAAGAGGTTTATCTACCT+TGG 0.491425 3_2:+91418225 Msa0437250:CDS
GCATGTGCTGATTTAATAGC+AGG 0.497078 3_2:-91417780 None:intergenic
AACTCCTTCCCACTATGCCT+TGG 0.498025 3_2:+91417536 Msa0437250:CDS
TATACCTTGCACATGTTTGG+AGG 0.502608 3_2:-91422546 None:intergenic
GGCCTAACTGAGACAGCTTT+AGG 0.505096 3_2:-91418510 None:intergenic
TCTCTTTAAACCTCAAACTA+GGG 0.506181 3_2:-91423150 None:intergenic
TCAGAGATTAACACTAATCC+TGG 0.509786 3_2:+91422441 Msa0437250:CDS
GAGACTATTGCCCTAGCTTG+AGG 0.514408 3_2:+91418259 Msa0437250:CDS
GAAATTCATGGTTGGTGTGA+TGG 0.515965 3_2:+91418366 Msa0437250:CDS
GAAATTCATGGTTGGTGTGA+TGG 0.515965 3_2:+91423247 Msa0437250:CDS
ATTATAGGACAAGATGATGA+TGG 0.517541 3_2:+91422230 Msa0437250:intron
ATTTCAGCCTTAACAAGTGA+AGG 0.518564 3_2:-91418348 None:intergenic
ATTTCAGCCTTAACAAGTGA+AGG 0.518564 3_2:-91423229 None:intergenic
TATACCTTGCACATGTTTGG+AGG 0.520088 3_2:-91417996 None:intergenic
AGAGAGACTTTGTGATGCCA+AGG 0.520604 3_2:+91423170 Msa0437250:CDS
GATCAACAAAATTATCATTG+AGG 0.521839 3_2:+91423300 Msa0437250:CDS
GACAGAGTTCCAAGGCATAG+TGG 0.523772 3_2:-91417545 None:intergenic
ATTATAGGGCAAGATGATGA+TGG 0.528679 3_2:+91417680 Msa0437250:intron
TTTCTCTAAGCCTCAAGCTA+GGG 0.531672 3_2:-91418269 None:intergenic
AGGTTTATCTACCTTGGTGA+TGG 0.544842 3_2:+91423112 Msa0437250:intron
AACCATAGAAGAGATTGAAA+AGG 0.546018 3_2:+91422272 Msa0437250:CDS
AGGTTTATCTACCTTGGTGA+TGG 0.549393 3_2:+91418231 Msa0437250:CDS
TAGGTATTTATAGTAAGAGA+AGG 0.550239 3_2:-91417239 None:intergenic
GCTAAATGGGTATCTGAAAG+TGG 0.567691 3_2:-91417326 None:intergenic
ACAGAGTTCCAAGGCATAGT+GGG 0.570869 3_2:-91417544 None:intergenic
TTGCCTAAAGCTCTCCCAGT+TGG 0.570960 3_2:+91423388 Msa0437250:CDS
TTTCTGAAGTCGTTAACAAG+AGG 0.572324 3_2:+91418211 Msa0437250:CDS
TCAGAGATTAACTCTAATCC+CGG 0.577684 3_2:+91417891 Msa0437250:CDS
GCCTTATTGAAATCATGGTA+AGG 0.589552 3_2:-91422498 None:intergenic
GTCTTACTGAAATCATGGTA+AGG 0.591132 3_2:-91417948 None:intergenic
TTTCAGCCTTAACAAGTGAA+GGG 0.593746 3_2:-91418347 None:intergenic
TTTCAGCCTTAACAAGTGAA+GGG 0.593746 3_2:-91423228 None:intergenic
TTAAGGCTGAAATTCATGGT+TGG 0.600341 3_2:+91418358 Msa0437250:CDS
TTAAGGCTGAAATTCATGGT+TGG 0.600341 3_2:+91423239 Msa0437250:CDS
ATACCTTGCACATGTTTGGA+GGG 0.605181 3_2:-91422545 None:intergenic
GATTTCAATAAGGCTTCACA+TGG 0.605748 3_2:+91422507 Msa0437250:CDS
GATTTCAGTAAGACTTCACA+TGG 0.619024 3_2:+91417957 Msa0437250:CDS
AGTTCCAAGGCATAGTGGGA+AGG 0.620394 3_2:-91417540 None:intergenic
TATGCCTTGGAACTCTGTCA+TGG 0.627315 3_2:+91417549 Msa0437250:CDS
AACTGGGAGAGCTTTAGGCA+AGG 0.630549 3_2:-91423386 None:intergenic
CTGTCCTCCAAACATGTGCA+AGG 0.634726 3_2:+91417992 Msa0437250:CDS
CTGCCCTCCAAACATGTGCA+AGG 0.634726 3_2:+91422542 Msa0437250:CDS
TAAAAGTTTATGGTCCAACT+GGG 0.649106 3_2:-91423402 None:intergenic
TTGCATATAAAATCCCACAC+TGG 0.662498 3_2:-91418321 None:intergenic
CATACCATGACAGAGTTCCA+AGG 0.665251 3_2:-91417553 None:intergenic
AGTCTCCAGCACCATCACCA+AGG 0.694728 3_2:-91418242 None:intergenic
AATCTCCAGCACCATCACCA+AGG 0.694728 3_2:-91423123 None:intergenic
TTGCATATCAAATCCCACAG+TGG 0.750161 3_2:-91423202 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAAATTAAAAAAAAT+TGG + chr3_2:91421484-91421503 Msa0437250:intron 0.0%
!!! TTTTTAAAAATCATTATTTC+AGG + chr3_2:91418158-91418177 Msa0437250:intron 10.0%
!!! TTTTAAAAATCATTATTTCA+GGG + chr3_2:91418159-91418178 Msa0437250:intron 10.0%
!!! TATTTTTTTTAAATAGAGAT+CGG + chr3_2:91419328-91419347 Msa0437250:intron 10.0%
!!! TTTTAGATAGAATAAATTTT+TGG - chr3_2:91419592-91419611 None:intergenic 10.0%
!! TTAAATGATTAATATTGTTT+GGG - chr3_2:91419632-91419651 None:intergenic 10.0%
!!! AAAATTTTCATCAAAATTTT+TGG - chr3_2:91420668-91420687 None:intergenic 10.0%
!!! TCTTTTAGTTTTTTTTTTTA+GGG - chr3_2:91420838-91420857 None:intergenic 10.0%
!!! TTCTTTTAGTTTTTTTTTTT+AGG - chr3_2:91420839-91420858 None:intergenic 10.0%
!!! ATGTTTTATTTTTTTTTTCA+TGG - chr3_2:91421074-91421093 None:intergenic 10.0%
!! TGAAAAAAAAAATAAAACAT+TGG + chr3_2:91421074-91421093 Msa0437250:intron 10.0%
!!! ATAAAAGAAAATTTGTTTAA+AGG - chr3_2:91421166-91421185 None:intergenic 10.0%
!!! TTAAAAGTTTTTTTTTTTGA+GGG - chr3_2:91421304-91421323 None:intergenic 10.0%
!!! ATTAAAAGTTTTTTTTTTTG+AGG - chr3_2:91421305-91421324 None:intergenic 10.0%
!!! CGTATTTTTAAATTAAATAT+TGG - chr3_2:91421726-91421745 None:intergenic 10.0%
!!! TATATTTTTTTTAGTGTTTT+AGG + chr3_2:91422567-91422586 Msa0437250:intron 10.0%
!! AAAAAGATGTATAATAAATA+GGG + chr3_2:91422896-91422915 Msa0437250:intron 10.0%
!!! ACATATTATTTTACAAAACA+GGG - chr3_2:91417599-91417618 None:intergenic 15.0%
!!! AACATATTATTTTACAAAAC+AGG - chr3_2:91417600-91417619 None:intergenic 15.0%
!!! TAATATATGATTAACTTGTT+TGG + chr3_2:91417650-91417669 Msa0437250:intron 15.0%
!! TTTGATTAACAAAATTATGA+TGG + chr3_2:91418416-91418435 Msa0437250:intron 15.0%
!!! ATTACATTTAAGTTAATCAA+AGG - chr3_2:91418593-91418612 None:intergenic 15.0%
!! TTGATTAACTTAAATGTAAT+AGG + chr3_2:91418593-91418612 Msa0437250:intron 15.0%
!!! TTTTTAGAATAGATATAAGT+AGG + chr3_2:91419370-91419389 Msa0437250:intron 15.0%
!!! ATCATTTAAGATCTATTTAA+AGG + chr3_2:91419400-91419419 Msa0437250:intron 15.0%
!! CTTAAATGATTAATATTGTT+TGG - chr3_2:91419633-91419652 None:intergenic 15.0%
!! TGCATAAACATATATATTAA+AGG + chr3_2:91419688-91419707 Msa0437250:intron 15.0%
!!! TTTTTTTAGAAGAATTATGT+CGG + chr3_2:91419729-91419748 Msa0437250:intron 15.0%
!!! CTTTCTTTTATAAATAAGAT+CGG - chr3_2:91419804-91419823 None:intergenic 15.0%
!! ATTGAAAAGGAAAATTAAAA+TGG + chr3_2:91420298-91420317 Msa0437250:intron 15.0%
!!! AAAGTGTGATTTATTTTTAT+AGG + chr3_2:91420763-91420782 Msa0437250:intron 15.0%
!!! AAGTGTGATTTATTTTTATA+GGG + chr3_2:91420764-91420783 Msa0437250:intron 15.0%
!! TAATCAAAATCAAAATTAGA+CGG + chr3_2:91421321-91421340 Msa0437250:intron 15.0%
!!! TTTAATTTAAAAATACGACA+AGG + chr3_2:91421729-91421748 Msa0437250:intron 15.0%
!! AATAAAGAATAATTTGATGT+AGG + chr3_2:91422628-91422647 Msa0437250:intron 15.0%
!!! GTAGATTCTTTATTTTATAT+TGG - chr3_2:91422671-91422690 None:intergenic 15.0%
!! AATATGTTTGTAATTACTAT+TGG + chr3_2:91422802-91422821 Msa0437250:intron 15.0%
!! GAAAAAGATGTATAATAAAT+AGG + chr3_2:91422895-91422914 Msa0437250:intron 15.0%
!! AAAAGATGTATAATAAATAG+GGG + chr3_2:91422897-91422916 Msa0437250:intron 15.0%
!! ATCAAAAATACAATTTATGA+TGG + chr3_2:91423079-91423098 Msa0437250:intron 15.0%
!! TCAAAAATACAATTTATGAT+GGG + chr3_2:91423080-91423099 Msa0437250:intron 15.0%
!!! GAAACTATTTTGAAGTATTT+AGG + chr3_2:91417852-91417871 Msa0437250:intron 20.0%
!!! AATAATGAATAATTTGGTGT+AGG + chr3_2:91418083-91418102 Msa0437250:intron 20.0%
!!! TTTAAAATAAAGACAAAGAG+TGG - chr3_2:91418110-91418129 None:intergenic 20.0%
!!! GTTTGTTAAAAACCAAATTA+TGG + chr3_2:91418729-91418748 Msa0437250:intron 20.0%
!! TTATACTTCGATATGAAATT+TGG + chr3_2:91418777-91418796 Msa0437250:intron 20.0%
!!! AAATTTTGAACTCATTACAT+AGG + chr3_2:91418847-91418866 Msa0437250:intron 20.0%
!! TAATCAATACAATGAAACTT+TGG - chr3_2:91418884-91418903 None:intergenic 20.0%
!!! ATGAGTTTTTTTTATATGAG+TGG + chr3_2:91418991-91419010 Msa0437250:intron 20.0%
!!! TTCAAAAATTTTCAAAAACG+TGG + chr3_2:91419119-91419138 Msa0437250:intron 20.0%
!!! TTCTTTCGACAAATATATTT+TGG + chr3_2:91419428-91419447 Msa0437250:intron 20.0%
!!! TTCATGATAATCTAGAATTT+GGG + chr3_2:91419544-91419563 Msa0437250:intron 20.0%
!! ATTAAAGGTAATGATTATAC+TGG + chr3_2:91419703-91419722 Msa0437250:intron 20.0%
!! TGAAGTGTATTTATTCTATA+CGG - chr3_2:91419895-91419914 None:intergenic 20.0%
!! CCACATATAATATAATTGAA+GGG - chr3_2:91420129-91420148 None:intergenic 20.0%
!!! CTTAATTAACCCTTTTTTTA+GGG - chr3_2:91420496-91420515 None:intergenic 20.0%
!!! ACTTAATTAACCCTTTTTTT+AGG - chr3_2:91420547-91420566 None:intergenic 20.0%
!! AAGAACAACATGATAAAATA+TGG + chr3_2:91420854-91420873 Msa0437250:intron 20.0%
!!! CAAAAATTCATTCTAAAAAG+TGG + chr3_2:91421387-91421406 Msa0437250:intron 20.0%
!!! ATTTAGGTTATTTAGAAGAT+CGG - chr3_2:91421686-91421705 None:intergenic 20.0%
!!! AAAAGAATATTTTATTTCGG+AGG - chr3_2:91421785-91421804 None:intergenic 20.0%
!! GAATAAAAAATATACCATGA+CGG - chr3_2:91422127-91422146 None:intergenic 20.0%
!!! ATTATTAACTTGTTTCGTTT+TGG + chr3_2:91422206-91422225 Msa0437250:intron 20.0%
!! TTTATATTGGCAAAAAATCT+TGG - chr3_2:91422658-91422677 None:intergenic 20.0%
!! GACAAAAAAAATTCTCAAAA+GGG + chr3_2:91422979-91422998 Msa0437250:intron 20.0%
!!! GTTTAAAATCATTTTTTGCA+TGG + chr3_2:91423040-91423059 Msa0437250:intron 20.0%
!! CAAAAATACAATTTATGATG+GGG + chr3_2:91423081-91423100 Msa0437250:intron 20.0%
! TAGGTATTTATAGTAAGAGA+AGG - chr3_2:91417242-91417261 None:intergenic 25.0%
!!! TTCAAAATTGGTTTTTTGCT+TGG - chr3_2:91417305-91417324 None:intergenic 25.0%
! ACAAGAAATAGAAGCTAAAT+GGG - chr3_2:91417342-91417361 None:intergenic 25.0%
!!! TGAACTAGTTTTTTCTTTCT+GGG + chr3_2:91417361-91417380 Msa0437250:five_prime_UTR 25.0%
! AATTGGTTGATTGATGAATT+AGG + chr3_2:91417493-91417512 Msa0437250:CDS 25.0%
!!! ATGATTAACTTGTTTGGTTT+TGG + chr3_2:91417656-91417675 Msa0437250:intron 25.0%
!!! TTGTTTGGTTTTGGAATTAT+AGG + chr3_2:91417665-91417684 Msa0437250:intron 25.0%
!!! TGTTTGGTTTTGGAATTATA+GGG + chr3_2:91417666-91417685 Msa0437250:intron 25.0%
!!! AACTTTTTCAATCTCTTCAA+TGG - chr3_2:91417727-91417746 None:intergenic 25.0%
! TATATTGGCATAAAATCTAG+TGG - chr3_2:91418058-91418077 None:intergenic 25.0%
! GATTAACAAAATTATGATGG+AGG + chr3_2:91418419-91418438 Msa0437250:intron 25.0%
!!! CATTGTATTGATTAGTTGAA+AGG + chr3_2:91418890-91418909 Msa0437250:intron 25.0%
!!! TACACTACTTTTGTGAATTT+CGG - chr3_2:91419091-91419110 None:intergenic 25.0%
! ATATACCATTTATGTTGCAT+TGG + chr3_2:91419475-91419494 Msa0437250:intron 25.0%
!!! ACACTCTAGTTTTTAATTGA+AGG + chr3_2:91419520-91419539 Msa0437250:intron 25.0%
!!! CACTCTAGTTTTTAATTGAA+GGG + chr3_2:91419521-91419540 Msa0437250:intron 25.0%
!! GTTCATGATAATCTAGAATT+TGG + chr3_2:91419543-91419562 Msa0437250:intron 25.0%
! CATTTAAGCTCAATTATATC+TGG + chr3_2:91419645-91419664 Msa0437250:intron 25.0%
!! TCTTTTATAAATAAGATCGG+AGG - chr3_2:91419801-91419820 None:intergenic 25.0%
!!! TGAAACATTCGTATTTTTAC+TGG + chr3_2:91419931-91419950 Msa0437250:intron 25.0%
! CATATAATATAATTGAAGGG+AGG - chr3_2:91420126-91420145 None:intergenic 25.0%
! CCCTTCAATTATATTATATG+TGG + chr3_2:91420126-91420145 Msa0437250:intron 25.0%
! GCCACATATAATATAATTGA+AGG - chr3_2:91420130-91420149 None:intergenic 25.0%
!! TTGTTATATGAGCATCTTTT+GGG + chr3_2:91420214-91420233 Msa0437250:intron 25.0%
! CATGCTCTATATTATTGAAA+AGG + chr3_2:91420285-91420304 Msa0437250:intron 25.0%
! TTAACAAGACCCTAAAAAAA+GGG + chr3_2:91420534-91420553 Msa0437250:intron 25.0%
!! AAGTGTGATATCATTTTGTA+GGG - chr3_2:91420607-91420626 None:intergenic 25.0%
!! AAAGTGTGATATCATTTTGT+AGG - chr3_2:91420608-91420627 None:intergenic 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG + chr3_2:91420640-91420659 Msa0437250:intron 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG + chr3_2:91420641-91420660 Msa0437250:intron 25.0%
!! ATGCTGAAGGAAAATTTTAT+AGG + chr3_2:91420703-91420722 Msa0437250:intron 25.0%
!! TGCTGAAGGAAAATTTTATA+GGG + chr3_2:91420704-91420723 Msa0437250:intron 25.0%
! CAAAACTGCAGATATTTATA+AGG + chr3_2:91420795-91420814 Msa0437250:intron 25.0%
! AACATGATAAAATATGGTCA+TGG + chr3_2:91420860-91420879 Msa0437250:intron 25.0%
! ATTTGATATATACCTGTCTT+TGG + chr3_2:91420924-91420943 Msa0437250:intron 25.0%
!! AATTAAGGGATATGAGATTT+TGG + chr3_2:91421113-91421132 Msa0437250:intron 25.0%
! AAAATCAAAATTAGACGGAT+TGG + chr3_2:91421326-91421345 Msa0437250:intron 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG + chr3_2:91421411-91421430 Msa0437250:intron 25.0%
!!! TAACCAATTTTAGAAGCATA+CGG + chr3_2:91421530-91421549 Msa0437250:intron 25.0%
! TATACCAAGAATATGCTTAT+GGG + chr3_2:91421561-91421580 Msa0437250:intron 25.0%
! TTAAATTAAATATTGGCCGT+TGG - chr3_2:91421719-91421738 None:intergenic 25.0%
!! TTGATTGTGATAGTGATAAT+TGG + chr3_2:91422037-91422056 Msa0437250:intron 25.0%
! AATTGGTTGATTGATGAATT+AGG + chr3_2:91417493-91417512 Msa0437250:CDS 25.0%
!!! TTGTTTCGTTTTGGAATTAT+AGG + chr3_2:91422215-91422234 Msa0437250:intron 25.0%
!! ATGATGGAATTTCATTCAAA+TGG + chr3_2:91422246-91422265 Msa0437250:CDS 25.0%
! TATATTGGCATATAATCTAG+TGG - chr3_2:91422607-91422626 None:intergenic 25.0%
!!! TTCCCGTTATTTTTTCAAAA+GGG - chr3_2:91422758-91422777 None:intergenic 25.0%
!!! ATTCCCGTTATTTTTTCAAA+AGG - chr3_2:91422759-91422778 None:intergenic 25.0%
!!! ATTTTATCCTTTAAGAGAGA+TGG + chr3_2:91422832-91422851 Msa0437250:intron 25.0%
! AATATAGTTGGAAATAGCAA+AGG + chr3_2:91422941-91422960 Msa0437250:intron 25.0%
! ATATAGTTGGAAATAGCAAA+GGG + chr3_2:91422942-91422961 Msa0437250:intron 25.0%
! GGACAAAAAAAATTCTCAAA+AGG + chr3_2:91422978-91422997 Msa0437250:intron 25.0%
!! TCAAAAGGGTCTTATAATTA+GGG + chr3_2:91422993-91423012 Msa0437250:intron 25.0%
! GATCAACAAAATTATCATTG+AGG + chr3_2:91423300-91423319 Msa0437250:CDS 25.0%
!! TTATAGTAAGAGAAGGTGTT+GGG - chr3_2:91417235-91417254 None:intergenic 30.0%
! TTTATAGTAAGAGAAGGTGT+TGG - chr3_2:91417236-91417255 None:intergenic 30.0%
TCTGAAAGTGGTTTCAAAAT+TGG - chr3_2:91417317-91417336 None:intergenic 30.0%
CACAAGAAATAGAAGCTAAA+TGG - chr3_2:91417343-91417362 None:intergenic 30.0%
!!! GTGAACTAGTTTTTTCTTTC+TGG + chr3_2:91417360-91417379 Msa0437250:five_prime_UTR 30.0%
!!! TAGTCATTTTTCTCTTTGAG+AGG - chr3_2:91417417-91417436 None:intergenic 30.0%
TTGATTGTGACAGTGATAAT+TGG + chr3_2:91417476-91417495 Msa0437250:CDS 30.0%
! ATGATGGAGTTTCATTCAAA+TGG + chr3_2:91417696-91417715 Msa0437250:CDS 30.0%
AGATTGAAAAAGTTCTGCAA+AGG + chr3_2:91417733-91417752 Msa0437250:CDS 30.0%
GGTATTATTCTGTGATGAAT+TGG - chr3_2:91417762-91417781 None:intergenic 30.0%
ATTAAATCAGCACATGCATT+AGG + chr3_2:91417786-91417805 Msa0437250:CDS 30.0%
TTAAATCAGCACATGCATTA+GGG + chr3_2:91417787-91417806 Msa0437250:CDS 30.0%
TCCTTCTTGATTAACATAAC+CGG - chr3_2:91417913-91417932 None:intergenic 30.0%
ATATATACCTTGCACATGTT+TGG - chr3_2:91418002-91418021 None:intergenic 30.0%
GCTATCATTGCAAATGTAAT+AGG + chr3_2:91418556-91418575 Msa0437250:intron 30.0%
GTGGTAAAGATTCCATAATT+TGG - chr3_2:91418744-91418763 None:intergenic 30.0%
GTATAAGATAATTCGAAGTG+TGG - chr3_2:91418763-91418782 None:intergenic 30.0%
!! TGTATTGATTAGTTGAAAGG+TGG + chr3_2:91418893-91418912 Msa0437250:intron 30.0%
! TGGTTCAACCAATTACATTT+TGG + chr3_2:91419059-91419078 Msa0437250:intron 30.0%
! GGTTCAACCAATTACATTTT+GGG + chr3_2:91419060-91419079 Msa0437250:intron 30.0%
! AAAATTTTCAAAAACGTGGC+TGG + chr3_2:91419123-91419142 Msa0437250:intron 30.0%
GTGTTAGCAATCCATTAAAA+GGG - chr3_2:91419202-91419221 None:intergenic 30.0%
TGTGTTAGCAATCCATTAAA+AGG - chr3_2:91419203-91419222 None:intergenic 30.0%
AAACACCAATGCAACATAAA+TGG - chr3_2:91419483-91419502 None:intergenic 30.0%
AAAGAAAGTCATACTATGAG+AGG + chr3_2:91420008-91420027 Msa0437250:intron 30.0%
TAATATAATTGAAGGGAGGA+GGG - chr3_2:91420122-91420141 None:intergenic 30.0%
ATAATATAATTGAAGGGAGG+AGG - chr3_2:91420123-91420142 None:intergenic 30.0%
!! CTTGTTATATGAGCATCTTT+TGG + chr3_2:91420213-91420232 Msa0437250:intron 30.0%
GTTAACAAGACCCTAAAAAA+AGG + chr3_2:91420533-91420552 Msa0437250:intron 30.0%
CAAAACTGTGGACATTTATA+GGG - chr3_2:91420576-91420595 None:intergenic 30.0%
ACAAAACTGTGGACATTTAT+AGG - chr3_2:91420577-91420596 None:intergenic 30.0%
ATAGAGACTAAAAATGCTGA+AGG + chr3_2:91420690-91420709 Msa0437250:intron 30.0%
ATAGGGACTAAAAACACTAA+CGG + chr3_2:91420721-91420740 Msa0437250:intron 30.0%
!! AGGATTTTGGAGGATATATA+GGG + chr3_2:91420947-91420966 Msa0437250:intron 30.0%
! TTTTTGCTTATGTTAGTGAC+CGG - chr3_2:91421373-91421392 None:intergenic 30.0%
!! ATTCCGTATGCTTCTAAAAT+TGG - chr3_2:91421536-91421555 None:intergenic 30.0%
!! AATTTTAGAAGCATACGGAA+TGG + chr3_2:91421535-91421554 Msa0437250:intron 30.0%
CTATACCAAGAATATGCTTA+TGG + chr3_2:91421560-91421579 Msa0437250:intron 30.0%
CTAAATTCAAACAGATCCAA+CGG + chr3_2:91421700-91421719 Msa0437250:intron 30.0%
!!! AATTACCTTGTTTTCCGTTT+TGG + chr3_2:91421825-91421844 Msa0437250:intron 30.0%
GGAAATTGAAAAAGCCAAAA+CGG - chr3_2:91421842-91421861 None:intergenic 30.0%
!! GAGAGAGAAAGGTATTTATA+GGG - chr3_2:91421863-91421882 None:intergenic 30.0%
!! TGAGAGAGAAAGGTATTTAT+AGG - chr3_2:91421864-91421883 None:intergenic 30.0%
!!! AGCAGTGATAGATTTTTTTC+AGG + chr3_2:91421922-91421941 Msa0437250:intron 30.0%
!!! TGGACATTTTTTTTTCTGAG+AGG - chr3_2:91421978-91421997 None:intergenic 30.0%
ATCACTATCACAATCAATGA+TGG - chr3_2:91422034-91422053 None:intergenic 30.0%
ATTATAGGACAAGATGATGA+TGG + chr3_2:91422230-91422249 Msa0437250:intron 30.0%
AACCATAGAAGAGATTGAAA+AGG + chr3_2:91422272-91422291 Msa0437250:CDS 30.0%
! AACCTTTTCAATCTCTTCTA+TGG - chr3_2:91422277-91422296 None:intergenic 30.0%
GGTATTATTCTGTGATGAAT+TGG - chr3_2:91417762-91417781 None:intergenic 30.0%
ATTAAATCAGCTCATGCATT+AGG + chr3_2:91422336-91422355 Msa0437250:CDS 30.0%
TTAAATCAGCTCATGCATTA+GGG + chr3_2:91422337-91422356 Msa0437250:CDS 30.0%
!!! TGAGACTATTTTGAAGCATT+TGG + chr3_2:91422401-91422420 Msa0437250:CDS 30.0%
!!! GAGACTATTTTGAAGCATTT+GGG + chr3_2:91422402-91422421 Msa0437250:CDS 30.0%
ACCTTACCATGATTTCAATA+AGG + chr3_2:91422497-91422516 Msa0437250:CDS 30.0%
ATATATACCTTGCACATGTT+TGG - chr3_2:91418002-91418021 None:intergenic 30.0%
ATATTGGCAAAAAATCTTGG+TGG - chr3_2:91422655-91422674 None:intergenic 30.0%
TCAAAAGGGTCCTATAATTA+GGG - chr3_2:91422744-91422763 None:intergenic 30.0%
TTCAAAAGGGTCCTATAATT+AGG - chr3_2:91422745-91422764 None:intergenic 30.0%
!! GGACCCTTTTGAAAAAATAA+CGG + chr3_2:91422752-91422771 Msa0437250:intron 30.0%
!! GACCCTTTTGAAAAAATAAC+GGG + chr3_2:91422753-91422772 Msa0437250:intron 30.0%
! AATAACGGGAATTAAGATAG+TGG + chr3_2:91422767-91422786 Msa0437250:intron 30.0%
TATAGTTGGAAATAGCAAAG+GGG + chr3_2:91422943-91422962 Msa0437250:intron 30.0%
! CTCAAAAGGGTCTTATAATT+AGG + chr3_2:91422992-91423011 Msa0437250:intron 30.0%
! TTTATGATGGGGATAACAAA+AGG + chr3_2:91423092-91423111 Msa0437250:intron 30.0%
AACAAAAGGTTTATCTACCT+TGG + chr3_2:91423106-91423125 Msa0437250:intron 30.0%
TCTCTTTAAACCTCAAACTA+GGG - chr3_2:91423153-91423172 None:intergenic 30.0%
ATCACTGTCACAATCAATGA+TGG - chr3_2:91417473-91417492 None:intergenic 35.0%
ATTATAGGGCAAGATGATGA+TGG + chr3_2:91417680-91417699 Msa0437250:intron 35.0%
TCAGAGATTAACTCTAATCC+CGG + chr3_2:91417891-91417910 Msa0437250:CDS 35.0%
CCTTCTTGATTAACATAACC+GGG - chr3_2:91417912-91417931 None:intergenic 35.0%
GTCTTACTGAAATCATGGTA+AGG - chr3_2:91417951-91417970 None:intergenic 35.0%
GTGAAGTCTTACTGAAATCA+TGG - chr3_2:91417956-91417975 None:intergenic 35.0%
GATTTCAGTAAGACTTCACA+TGG + chr3_2:91417957-91417976 Msa0437250:CDS 35.0%
!! TTTCTGAAGTCGTTAACAAG+AGG + chr3_2:91418211-91418230 Msa0437250:CDS 35.0%
AACAAGAGGTTTATCTACCT+TGG + chr3_2:91418225-91418244 Msa0437250:CDS 35.0%
AAAAAGACTTTGTGATGCCA+AGG + chr3_2:91418289-91418308 Msa0437250:CDS 35.0%
! AAGGAAGATTTTTCCAGTGT+GGG + chr3_2:91418308-91418327 Msa0437250:CDS 35.0%
TTGCATATAAAATCCCACAC+TGG - chr3_2:91418324-91418343 None:intergenic 35.0%
TTTCAGCCTTAACAAGTGAA+GGG - chr3_2:91418350-91418369 None:intergenic 35.0%
ATTTCAGCCTTAACAAGTGA+AGG - chr3_2:91418351-91418370 None:intergenic 35.0%
CTTGTTAAGGCTGAAATTCA+TGG + chr3_2:91418354-91418373 Msa0437250:CDS 35.0%
TTAAGGCTGAAATTCATGGT+TGG + chr3_2:91418358-91418377 Msa0437250:CDS 35.0%
TTAGGCAAAGATACAAGAAC+TGG - chr3_2:91418495-91418514 None:intergenic 35.0%
TCAGTTAGGCCATAAATTCT+AGG + chr3_2:91418522-91418541 Msa0437250:intron 35.0%
ACTAGCAAGCCTAGAATTTA+TGG - chr3_2:91418534-91418553 None:intergenic 35.0%
TGCAAATGTCAGTGAAAATG+TGG + chr3_2:91418627-91418646 Msa0437250:intron 35.0%
TGGTCGTCTTTGTTAACTTA+TGG + chr3_2:91418666-91418685 Msa0437250:intron 35.0%
GGTCGTCTTTGTTAACTTAT+GGG + chr3_2:91418667-91418686 Msa0437250:intron 35.0%
GTCTATTTCAAAATCCACGT+TGG + chr3_2:91418816-91418835 Msa0437250:intron 35.0%
AAATTTACATCGTACCAACG+TGG - chr3_2:91418833-91418852 None:intergenic 35.0%
GGCAATTCCCAAAATGTAAT+TGG - chr3_2:91419070-91419089 None:intergenic 35.0%
! GTTGAGCATTACCCTTTTAA+TGG + chr3_2:91419188-91419207 Msa0437250:intron 35.0%
ATTGCTAACACACAAAGAGA+TGG + chr3_2:91419211-91419230 Msa0437250:intron 35.0%
!!! AGCATCGTGATAGCATTTTT+TGG + chr3_2:91419253-91419272 Msa0437250:intron 35.0%
!!! GCATCGTGATAGCATTTTTT+GGG + chr3_2:91419254-91419273 Msa0437250:intron 35.0%
!!! CATCGTGATAGCATTTTTTG+GGG + chr3_2:91419255-91419274 Msa0437250:intron 35.0%
! TAATCTAGAATTTGGGTGTG+AGG + chr3_2:91419551-91419570 Msa0437250:intron 35.0%
! ATGCGCAATTTTCATAGTGA+GGG - chr3_2:91419760-91419779 None:intergenic 35.0%
TTGAGCATACAAAGTATGTG+TGG + chr3_2:91420048-91420067 Msa0437250:intron 35.0%
!!! CATCTTTTGGGATCGATAAA+AGG + chr3_2:91420226-91420245 Msa0437250:intron 35.0%
TGGGATCGATAAAAGGATTA+CGG + chr3_2:91420233-91420252 Msa0437250:intron 35.0%
TATAGAGCATGTGAACAAGA+TGG - chr3_2:91420276-91420295 None:intergenic 35.0%
CAAACACTCTTACGACTATT+TGG - chr3_2:91420403-91420422 None:intergenic 35.0%
!! AGTGTTTGCGAGTTTGTTTT+TGG + chr3_2:91420415-91420434 Msa0437250:intron 35.0%
! AGGGTTAATTAAGAGTGCAT+TGG + chr3_2:91420503-91420522 Msa0437250:intron 35.0%
! GGGTTAATTAAGAGTGCATT+GGG + chr3_2:91420504-91420523 Msa0437250:intron 35.0%
! GGTTAATTAAGAGTGCATTG+GGG + chr3_2:91420505-91420524 Msa0437250:intron 35.0%
AGGGACTAAAAACAAAACTG+TGG - chr3_2:91420588-91420607 None:intergenic 35.0%
TGCTTAAGGAAAATGTCACA+GGG - chr3_2:91420636-91420655 None:intergenic 35.0%
ATGCTTAAGGAAAATGTCAC+AGG - chr3_2:91420637-91420656 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTTA+AGG - chr3_2:91420650-91420669 None:intergenic 35.0%
TGATATATACCTGTCTTTGG+AGG + chr3_2:91420927-91420946 Msa0437250:intron 35.0%
!! GAGGATTTTGGAGGATATAT+AGG + chr3_2:91420946-91420965 Msa0437250:intron 35.0%
! AGGGATATGAGATTTTGGAT+CGG + chr3_2:91421118-91421137 Msa0437250:intron 35.0%
ACCTTAATATATACACCCTC+CGG + chr3_2:91421351-91421370 Msa0437250:intron 35.0%
TAGGTTTGATGTGAAAGCTA+AGG + chr3_2:91421440-91421459 Msa0437250:intron 35.0%
AATCCTCCTTATTCTTCTCA+TGG + chr3_2:91421641-91421660 Msa0437250:intron 35.0%
AGGTTATTTAGAAGATCGGA+GGG - chr3_2:91421682-91421701 None:intergenic 35.0%
TAGGTTATTTAGAAGATCGG+AGG - chr3_2:91421683-91421702 None:intergenic 35.0%
CGTTGGATCTGTTTGAATTT+AGG - chr3_2:91421702-91421721 None:intergenic 35.0%
ACGACAAGGATTATGAGTTA+TGG + chr3_2:91421743-91421762 Msa0437250:intron 35.0%
AAAAGCCAAAACGGAAAACA+AGG - chr3_2:91421833-91421852 None:intergenic 35.0%
! GTTGATAAAGTGAGAGAGAA+AGG - chr3_2:91421874-91421893 None:intergenic 35.0%
ACCAAGAAAGAACCAACTTT+GGG + chr3_2:91421899-91421918 Msa0437250:intron 35.0%
! CATTCCTTAGAAGTTTTGCA+TGG + chr3_2:91422166-91422185 Msa0437250:intron 35.0%
TCAGAGATTAACACTAATCC+TGG + chr3_2:91422441-91422460 Msa0437250:CDS 35.0%
CCTTCTTGATTAACATAACC+AGG - chr3_2:91417912-91417931 None:intergenic 35.0%
CCTGGTTATGTTAATCAAGA+AGG + chr3_2:91422459-91422478 Msa0437250:intron 35.0%
! GCCTTATTGAAATCATGGTA+AGG - chr3_2:91422501-91422520 None:intergenic 35.0%
!! GTGAAGCCTTATTGAAATCA+TGG - chr3_2:91422506-91422525 None:intergenic 35.0%
GATTTCAATAAGGCTTCACA+TGG + chr3_2:91422507-91422526 Msa0437250:CDS 35.0%
! TATCCTTTAAGAGAGATGGT+TGG + chr3_2:91422836-91422855 Msa0437250:intron 35.0%
AAACCAACCATCTCTCTTAA+AGG - chr3_2:91422842-91422861 None:intergenic 35.0%
! AGCAAAGGGGTCTTATAAAA+AGG + chr3_2:91422956-91422975 Msa0437250:intron 35.0%
! GCAAAGGGGTCTTATAAAAA+GGG + chr3_2:91422957-91422976 Msa0437250:intron 35.0%
! AAGGGTCTTATAATTAGGGA+CGG + chr3_2:91422997-91423016 Msa0437250:intron 35.0%
CTCTCTTTAAACCTCAAACT+AGG - chr3_2:91423154-91423173 None:intergenic 35.0%
! AAGGAAGAATTTTCCACTGT+GGG + chr3_2:91423189-91423208 Msa0437250:CDS 35.0%
TTTCAGCCTTAACAAGTGAA+GGG - chr3_2:91418350-91418369 None:intergenic 35.0%
ATTTCAGCCTTAACAAGTGA+AGG - chr3_2:91418351-91418370 None:intergenic 35.0%
CTTGTTAAGGCTGAAATTCA+TGG + chr3_2:91418354-91418373 Msa0437250:CDS 35.0%
TTAAGGCTGAAATTCATGGT+TGG + chr3_2:91418358-91418377 Msa0437250:CDS 35.0%
GCTAAATGGGTATCTGAAAG+TGG - chr3_2:91417329-91417348 None:intergenic 40.0%
TACAAAACAGGGCACATGAA+TGG - chr3_2:91417588-91417607 None:intergenic 40.0%
!! GCATGTGCTGATTTAATAGC+AGG - chr3_2:91417783-91417802 None:intergenic 40.0%
ATGCATTAGGGTGTGATTTG+AGG + chr3_2:91417799-91417818 Msa0437250:CDS 40.0%
CCCGGTTATGTTAATCAAGA+AGG + chr3_2:91417909-91417928 Msa0437250:CDS 40.0%
TATACCTTGCACATGTTTGG+AGG - chr3_2:91417999-91418018 None:intergenic 40.0%
AGGTTTATCTACCTTGGTGA+TGG + chr3_2:91418231-91418250 Msa0437250:CDS 40.0%
TTTCTCTAAGCCTCAAGCTA+GGG - chr3_2:91418272-91418291 None:intergenic 40.0%
! TTTTCTCTAAGCCTCAAGCT+AGG - chr3_2:91418273-91418292 None:intergenic 40.0%
CACACTGGAAAAATCTTCCT+TGG - chr3_2:91418309-91418328 None:intergenic 40.0%
! CAAGGAAGATTTTTCCAGTG+TGG + chr3_2:91418307-91418326 Msa0437250:CDS 40.0%
! CAAAGACCCTTCACTTGTTA+AGG + chr3_2:91418341-91418360 Msa0437250:CDS 40.0%
! GAAATTCATGGTTGGTGTGA+TGG + chr3_2:91418366-91418385 Msa0437250:CDS 40.0%
! TTGGTGTGATGGAGAAGAAT+TGG + chr3_2:91418377-91418396 Msa0437250:CDS 40.0%
GTGGAAACTAGTTAGAGATG+TGG + chr3_2:91418646-91418665 Msa0437250:intron 40.0%
CTCAAATGACTCGTGAAATG+TGG + chr3_2:91419039-91419058 Msa0437250:intron 40.0%
!!! AGCATTTTTTGGGGACAAGT+AGG + chr3_2:91419264-91419283 Msa0437250:intron 40.0%
! CATGCGCAATTTTCATAGTG+AGG - chr3_2:91419761-91419780 None:intergenic 40.0%
GCATACAAAGTATGTGTGGA+AGG + chr3_2:91420052-91420071 Msa0437250:intron 40.0%
!! ATGTGAACAAGATGGACTAG+TGG - chr3_2:91420268-91420287 None:intergenic 40.0%
! TTGGTTGATGTAAGCTGAGA+GGG - chr3_2:91420384-91420403 None:intergenic 40.0%
! TTTGGTTGATGTAAGCTGAG+AGG - chr3_2:91420385-91420404 None:intergenic 40.0%
!!! GTTTGCGAGTTTGTTTTTGG+AGG + chr3_2:91420418-91420437 Msa0437250:intron 40.0%
!!! CGAGTTTGTTTTTGGAGGAT+AGG + chr3_2:91420423-91420442 Msa0437250:intron 40.0%
!! TACCTGTCTTTGGAGGATTT+TGG + chr3_2:91420934-91420953 Msa0437250:intron 40.0%
! ACCGGAGGGTGTATATATTA+AGG - chr3_2:91421355-91421374 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG + chr3_2:91421414-91421433 Msa0437250:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG + chr3_2:91421415-91421434 Msa0437250:intron 40.0%
!! AATAAGGAGGATTGATGACG+AGG - chr3_2:91421634-91421653 None:intergenic 40.0%
GTTAGGCCATGAGAAGAATA+AGG - chr3_2:91421650-91421669 None:intergenic 40.0%
! AAGTTGGTTCTTTCTTGGTG+TGG - chr3_2:91421898-91421917 None:intergenic 40.0%
CACCAAGAAAGAACCAACTT+TGG + chr3_2:91421898-91421917 Msa0437250:intron 40.0%
! TCCCAAAGTTGGTTCTTTCT+TGG - chr3_2:91421903-91421922 None:intergenic 40.0%
! TATACCATGACGGAATTCCA+AGG - chr3_2:91422117-91422136 None:intergenic 40.0%
GAGACCATGCAAAACTTCTA+AGG - chr3_2:91422173-91422192 None:intergenic 40.0%
! GCATGAGCTGATTTAATTGC+AGG - chr3_2:91422333-91422352 None:intergenic 40.0%
ATGCATTAGGGTGTGATTTG+AGG + chr3_2:91417799-91417818 Msa0437250:CDS 40.0%
ATACCTTGCACATGTTTGGA+GGG - chr3_2:91417998-91418017 None:intergenic 40.0%
TATACCTTGCACATGTTTGG+AGG - chr3_2:91417999-91418018 None:intergenic 40.0%
AAGGGTCCTATAATTAGGGA+CGG - chr3_2:91422740-91422759 None:intergenic 40.0%
AGGTTTATCTACCTTGGTGA+TGG + chr3_2:91418231-91418250 Msa0437250:CDS 40.0%
GAGATTATTGCCCTAGTTTG+AGG + chr3_2:91423140-91423159 Msa0437250:CDS 40.0%
CACAGTGGAAAATTCTTCCT+TGG - chr3_2:91423190-91423209 None:intergenic 40.0%
! CAAGGAAGAATTTTCCACTG+TGG + chr3_2:91423188-91423207 Msa0437250:CDS 40.0%
TTGCATATCAAATCCCACAG+TGG - chr3_2:91423205-91423224 None:intergenic 40.0%
! CAAAGACCCTTCACTTGTTA+AGG + chr3_2:91418341-91418360 Msa0437250:CDS 40.0%
! GAAATTCATGGTTGGTGTGA+TGG + chr3_2:91418366-91418385 Msa0437250:CDS 40.0%
ACAGAGTTCCAAGGCATAGT+GGG - chr3_2:91417547-91417566 None:intergenic 45.0%
TATGCCTTGGAACTCTGTCA+TGG + chr3_2:91417549-91417568 Msa0437250:CDS 45.0%
CATACCATGACAGAGTTCCA+AGG - chr3_2:91417556-91417575 None:intergenic 45.0%
TGCCTAAAGCTGTCTCAGTT+AGG + chr3_2:91418508-91418527 Msa0437250:intron 45.0%
GCTAACACACAAAGAGATGG+AGG + chr3_2:91419214-91419233 Msa0437250:intron 45.0%
AACACACAAAGAGATGGAGG+AGG + chr3_2:91419217-91419236 Msa0437250:intron 45.0%
ACACACAAAGAGATGGAGGA+GGG + chr3_2:91419218-91419237 Msa0437250:intron 45.0%
!! GGATCTATGTGAGCATTGAC+TGG + chr3_2:91420073-91420092 Msa0437250:intron 45.0%
!! ATGTGAGCATTGACTGGTGT+TGG + chr3_2:91420079-91420098 Msa0437250:intron 45.0%
ACCACCTTGCATTGTATGGT+TGG - chr3_2:91420329-91420348 None:intergenic 45.0%
GTGAACCACCTTGCATTGTA+TGG - chr3_2:91420333-91420352 None:intergenic 45.0%
TACAATGCAAGGTGGTTCAC+TGG + chr3_2:91420333-91420352 Msa0437250:intron 45.0%
ACAATGCAAGGTGGTTCACT+GGG + chr3_2:91420334-91420353 Msa0437250:intron 45.0%
ATGTAAGCTGAGAGGGCAAT+CGG - chr3_2:91420377-91420396 None:intergenic 45.0%
CTCCAAAATCCTCCAAAGAC+AGG - chr3_2:91420939-91420958 None:intergenic 45.0%
!! CTGTCTTTGGAGGATTTTGG+AGG + chr3_2:91420937-91420956 Msa0437250:intron 45.0%
TGCTTATGTTAGTGACCGGA+GGG - chr3_2:91421369-91421388 None:intergenic 45.0%
TTGCTTATGTTAGTGACCGG+AGG - chr3_2:91421370-91421389 None:intergenic 45.0%
GCAGCCCATAAGCATATTCT+TGG - chr3_2:91421568-91421587 None:intergenic 45.0%
TGGGCTGCAAATGCATTTAG+TGG + chr3_2:91421580-91421599 Msa0437250:intron 45.0%
GCTGCAAATGCATTTAGTGG+TGG + chr3_2:91421583-91421602 Msa0437250:intron 45.0%
AGGCCATGAGAAGAATAAGG+AGG - chr3_2:91421647-91421666 None:intergenic 45.0%
TCTATCACTGCTCCCAAAGT+TGG - chr3_2:91421914-91421933 None:intergenic 45.0%
!! AATTCCAAGGCATTGTGGGA+AGG - chr3_2:91422104-91422123 None:intergenic 45.0%
!! ACGGAATTCCAAGGCATTGT+GGG - chr3_2:91422108-91422127 None:intergenic 45.0%
AATGCCTTGGAATTCCGTCA+TGG + chr3_2:91422110-91422129 Msa0437250:intron 45.0%
CTACCTCCGTCCCTAATTAT+AGG + chr3_2:91422731-91422750 Msa0437250:intron 45.0%
! GGTCTTATAATTAGGGACGG+AGG + chr3_2:91423000-91423019 Msa0437250:intron 45.0%
AGAGAGACTTTGTGATGCCA+AGG + chr3_2:91423170-91423189 Msa0437250:CDS 45.0%
CAAGGATTCGAGCACATGAA+TGG - chr3_2:91423371-91423390 None:intergenic 45.0%
!! ATTCATTATTATATTTATAT+TGG - chr3_2:91418073-91418092 None:intergenic 5.0%
!! AAATATAATAATGAATAATT+TGG + chr3_2:91418077-91418096 Msa0437250:intron 5.0%
!!! ATTTTTCTTTTTATAATATT+AGG + chr3_2:91419287-91419306 Msa0437250:intron 5.0%
!!! TTTTTCTTTTTATAATATTA+GGG + chr3_2:91419288-91419307 Msa0437250:intron 5.0%
!! AAATACTTTATATTAAAAAA+AGG + chr3_2:91420483-91420502 Msa0437250:intron 5.0%
!! AATACTTTATATTAAAAAAA+GGG + chr3_2:91420484-91420503 Msa0437250:intron 5.0%
!! ATATATACTATTATAAATTA+AGG + chr3_2:91421098-91421117 Msa0437250:intron 5.0%
!! TATATACTATTATAAATTAA+GGG + chr3_2:91421099-91421118 Msa0437250:intron 5.0%
!!! ATAAAAAGAATATTTTATTT+CGG - chr3_2:91421788-91421807 None:intergenic 5.0%
!! AAAAATAATAACAATATTAT+TGG - chr3_2:91421998-91422017 None:intergenic 5.0%
!!! AATTATTCTTTATTTTATAT+TGG - chr3_2:91422622-91422641 None:intergenic 5.0%
!! AAAAAAATAATTAATATAGT+TGG + chr3_2:91422929-91422948 Msa0437250:intron 5.0%
AGAGAGAGAGAGAGAGAGGT+AGG - chr3_2:91417261-91417280 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr3_2:91417263-91417282 None:intergenic 50.0%
AACTCCTTCCCACTATGCCT+TGG + chr3_2:91417536-91417555 Msa0437250:CDS 50.0%
! AGTTCCAAGGCATAGTGGGA+AGG - chr3_2:91417543-91417562 None:intergenic 50.0%
GACAGAGTTCCAAGGCATAG+TGG - chr3_2:91417548-91417567 None:intergenic 50.0%
CTGTCCTCCAAACATGTGCA+AGG + chr3_2:91417992-91418011 Msa0437250:CDS 50.0%
!! ATCTACCTTGGTGATGGTGC+TGG + chr3_2:91418237-91418256 Msa0437250:CDS 50.0%
GAGACTATTGCCCTAGCTTG+AGG + chr3_2:91418259-91418278 Msa0437250:CDS 50.0%
GGCCTAACTGAGACAGCTTT+AGG - chr3_2:91418513-91418532 None:intergenic 50.0%
CCTTGCATTGTATGGTTGGC+TGG - chr3_2:91420325-91420344 None:intergenic 50.0%
CCAGCCAACCATACAATGCA+AGG + chr3_2:91420322-91420341 Msa0437250:intron 50.0%
GCCAACCATACAATGCAAGG+TGG + chr3_2:91420325-91420344 Msa0437250:intron 50.0%
TGTAAGCTGAGAGGGCAATC+GGG - chr3_2:91420376-91420395 None:intergenic 50.0%
! TATTAGTGACCGGAGGGTGT+AGG + chr3_2:91421421-91421440 Msa0437250:intron 50.0%
CACATCAAACCTACACCCTC+CGG - chr3_2:91421433-91421452 None:intergenic 50.0%
!! GACGGAATTCCAAGGCATTG+TGG - chr3_2:91422109-91422128 None:intergenic 50.0%
GGTCCTATAATTAGGGACGG+AGG - chr3_2:91422737-91422756 None:intergenic 50.0%
!! ATCTACCTTGGTGATGGTGC+TGG + chr3_2:91418237-91418256 Msa0437250:CDS 50.0%
AATCTCCAGCACCATCACCA+AGG - chr3_2:91423126-91423145 None:intergenic 50.0%
!! AACTGGGAGAGCTTTAGGCA+AGG - chr3_2:91423389-91423408 None:intergenic 50.0%
TTGCCTAAAGCTCTCCCAGT+TGG + chr3_2:91423388-91423407 Msa0437250:CDS 50.0%
AGTCTCCAGCACCATCACCA+AGG - chr3_2:91418245-91418264 None:intergenic 55.0%
! TCGGAGGGTGTGTGATGGTT+AGG - chr3_2:91421667-91421686 None:intergenic 55.0%
! GAAGATCGGAGGGTGTGTGA+TGG - chr3_2:91421672-91421691 None:intergenic 55.0%
AGCTCCTTCCCACAATGCCT+TGG + chr3_2:91422097-91422116 Msa0437250:intron 55.0%
CTGCCCTCCAAACATGTGCA+AGG + chr3_2:91422542-91422561 Msa0437250:CDS 55.0%
GGTCCAACTGGGAGAGCTTT+AGG - chr3_2:91423394-91423413 None:intergenic 55.0%
GGTGGTTCACTGGGAGCAAG+AGG + chr3_2:91420343-91420362 Msa0437250:intron 60.0%
GGTTCACTGGGAGCAAGAGG+TGG + chr3_2:91420346-91420365 Msa0437250:intron 60.0%
CACTGGGAGCAAGAGGTGGC+CGG + chr3_2:91420350-91420369 Msa0437250:intron 65.0%
AGCTGAGAGGGCAATCGGGC+CGG - chr3_2:91420372-91420391 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 91417216 91423417 91417216 ID=Msa0437250;Name=Msa0437250
chr3_2 mRNA 91417216 91423417 91417216 ID=Msa0437250-mRNA-1;Parent=Msa0437250;Name=Msa0437250-mRNA-1;_AED=0.16;_eAED=0.21;_QI=214|0.28|0.12|1|0.28|0.25|8|0|451
chr3_2 exon 91417216 91417570 91417216 ID=Msa0437250-mRNA-1:exon:27298;Parent=Msa0437250-mRNA-1
chr3_2 exon 91417687 91417824 91417687 ID=Msa0437250-mRNA-1:exon:27299;Parent=Msa0437250-mRNA-1
chr3_2 exon 91417867 91418013 91417867 ID=Msa0437250-mRNA-1:exon:27300;Parent=Msa0437250-mRNA-1
chr3_2 exon 91418180 91418404 91418180 ID=Msa0437250-mRNA-1:exon:27301;Parent=Msa0437250-mRNA-1
chr3_2 exon 91418441 91418524 91418441 ID=Msa0437250-mRNA-1:exon:27302;Parent=Msa0437250-mRNA-1
chr3_2 exon 91422237 91422467 91422237 ID=Msa0437250-mRNA-1:exon:27303;Parent=Msa0437250-mRNA-1
chr3_2 exon 91422478 91422563 91422478 ID=Msa0437250-mRNA-1:exon:27304;Parent=Msa0437250-mRNA-1
chr3_2 exon 91423114 91423417 91423114 ID=Msa0437250-mRNA-1:exon:27305;Parent=Msa0437250-mRNA-1
chr3_2 five_prime_UTR 91417216 91417429 91417216 ID=Msa0437250-mRNA-1:five_prime_utr;Parent=Msa0437250-mRNA-1
chr3_2 CDS 91417430 91417570 91417430 ID=Msa0437250-mRNA-1:cds;Parent=Msa0437250-mRNA-1
chr3_2 CDS 91417687 91417824 91417687 ID=Msa0437250-mRNA-1:cds;Parent=Msa0437250-mRNA-1
chr3_2 CDS 91417867 91418013 91417867 ID=Msa0437250-mRNA-1:cds;Parent=Msa0437250-mRNA-1
chr3_2 CDS 91418180 91418404 91418180 ID=Msa0437250-mRNA-1:cds;Parent=Msa0437250-mRNA-1
chr3_2 CDS 91418441 91418524 91418441 ID=Msa0437250-mRNA-1:cds;Parent=Msa0437250-mRNA-1
chr3_2 CDS 91422237 91422467 91422237 ID=Msa0437250-mRNA-1:cds;Parent=Msa0437250-mRNA-1
chr3_2 CDS 91422478 91422563 91422478 ID=Msa0437250-mRNA-1:cds;Parent=Msa0437250-mRNA-1
chr3_2 CDS 91423114 91423417 91423114 ID=Msa0437250-mRNA-1:cds;Parent=Msa0437250-mRNA-1
Gene Sequence

>Msa0437250

ATGACTAATAACATTGTTATTGTTTTCGACTTTGACAAAACCATCATTGATTGTGACAGTGATAATTGGTTGATTGATGAATTAGGTTTCACTGATTTGTTTAATCAACTCCTTCCCACTATGCCTTGGAACTCTGTCATGGGCAAGATGATGATGGAGTTTCATTCAAATGGAATAACCATTGAAGAGATTGAAAAAGTTCTGCAAAGGATTCCAATTCATCACAGAATAATACCTGCTATTAAATCAGCACATGCATTAGGGTGTGATTTGAGGATTTATTTAGGAATAAGTGAATGCTTCTCAGAGATTAACTCTAATCCCGGTTATGTTAATCAAGAAGGAAGAGTTAGAATTTCACCTTACCATGATTTCAGTAAGACTTCACATGGTTGCAACAATGTCTGTCCTCCAAACATGTGCAAGGGATTAATCATTGATAAAATTCAAAATTCAATTTCTGAAGTCGTTAACAAGAGGTTTATCTACCTTGGTGATGGTGCTGGAGACTATTGCCCTAGCTTGAGGCTTAGAGAAAAAGACTTTGTGATGCCAAGGAAGATTTTTCCAGTGTGGGATTTTATATGCAAAGACCCTTCACTTGTTAAGGCTGAAATTCATGGTTGGTGTGATGGAGAAGAATTGGAACAAGAACATGTTCAACTTATTTCTTCTGATTGCAAGCTACAAACTCTATCTAGTCCAGTTCTTGTATCTTTGCCTAAAGCTGTCTCAGACAAGATGATGATGGAATTTCATTCAAATGGAATAACCATAGAAGAGATTGAAAAGGTTCTTCATAAGATTCCAATTCATCACAGAATAATACCTGCAATTAAATCAGCTCATGCATTAGGGTGTGATTTGAGGATTGTGAGTGATGCTAATATGTTTTACATTGAGACTATTTTGAAGCATTTGGGAATCAGTGAATACTTCTCAGAGATTAACACTAATCCTGGTTATAAGGAAGACTTAGAATTTCACCTTACCATGATTTCAATAAGGCTTCACATGGTTGCAGCAATGTCTGCCCTCCAAACATGTGCAAGGTTTATCTACCTTGGTGATGGTGCTGGAGATTATTGCCCTAGTTTGAGGTTTAAAGAGAGAGACTTTGTGATGCCAAGGAAGAATTTTCCACTGTGGGATTTGATATGCAAAGACCCTTCACTTGTTAAGGCTGAAATTCATGGTTGGTGTGATGGAGAAGAGCTTGAACAAATTTTGATTCAATTGATCAACAAAATTATCATTGAGGAAAATGCTCAGTTCATTTCAAGTGATTGCAAGCTGCAAACTCTATCCATTCATGTGCTCGAATCCTTGCCTAAAGCTCTCCCAGTTGGACCATAA

Protein sequence

>Msa0437250

MTNNIVIVFDFDKTIIDCDSDNWLIDELGFTDLFNQLLPTMPWNSVMGKMMMEFHSNGITIEEIEKVLQRIPIHHRIIPAIKSAHALGCDLRIYLGISECFSEINSNPGYVNQEGRVRISPYHDFSKTSHGCNNVCPPNMCKGLIIDKIQNSISEVVNKRFIYLGDGAGDYCPSLRLREKDFVMPRKIFPVWDFICKDPSLVKAEIHGWCDGEELEQEHVQLISSDCKLQTLSSPVLVSLPKAVSDKMMMEFHSNGITIEEIEKVLHKIPIHHRIIPAIKSAHALGCDLRIVSDANMFYIETILKHLGISEYFSEINTNPGYKEDLEFHLTMISIRLHMVAAMSALQTCARFIYLGDGAGDYCPSLRFKERDFVMPRKNFPLWDLICKDPSLVKAEIHGWCDGEELEQILIQLINKIIIEENAQFISSDCKLQTLSIHVLESLPKALPVGP*