AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1179790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1179790 MtrunA17_Chr8g0341741 94.526 274 15 0 1 274 1 274 0.0 537
Msa1179790 MtrunA17_Chr8g0341731 88.321 274 32 0 1 274 1 274 0.0 510
Msa1179790 MtrunA17_Chr8g0341701 84.672 274 41 1 1 274 1 273 3.44e-176 486
Msa1179790 MtrunA17_Chr8g0341721 82.836 268 41 2 1 264 1 267 4.57e-168 465
Msa1179790 MtrunA17_Chr2g0330511 72.119 269 73 2 4 272 3 269 3.06e-144 405
Msa1179790 MtrunA17_Chr2g0309111 70.632 269 78 1 4 272 47 314 8.43e-140 396
Msa1179790 MtrunA17_Chr2g0330491 56.250 272 114 2 5 272 4 274 3.65e-113 327
Msa1179790 MtrunA17_Chr8g0389271 58.403 238 93 5 5 239 2 236 1.71e-100 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1179790 AT1G17710.1 64.338 272 88 4 3 266 5 275 1.48e-129 369
Msa1179790 AT1G73010.1 65.000 260 86 2 5 259 14 273 2.47e-125 358
Msa1179790 AT1G17710.2 58.696 230 86 4 45 266 15 243 9.39e-96 282
Msa1179790 AT4G29530.1 52.282 241 113 2 5 244 4 243 1.81e-92 273
Msa1179790 AT4G29530.2 50.505 198 96 2 48 244 36 232 3.52e-69 214

Find 63 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGCAAGCCTAGAATTTA+TGG 0.189661 8_1:-13363477 None:intergenic
TCTGAAAGTGGTTTCAAAAT+TGG 0.194557 8_1:-13362259 None:intergenic
CACAAGAAATAGAAGCTAAA+TGG 0.195221 8_1:-13362285 None:intergenic
TGGTCGTCTTTGTTAACTTA+TGG 0.195647 8_1:+13363612 Msa1179790:three_prime_UTR
TTGATTAACTTAAATGTAAT+AGG 0.268447 8_1:+13363539 Msa1179790:three_prime_UTR
GCTATCATTGCAAATGTAAT+AGG 0.269161 8_1:+13363502 Msa1179790:three_prime_UTR
AATTGGTTGATTGATGAATT+AGG 0.292483 8_1:+13362438 Msa1179790:CDS
GGTCGTCTTTGTTAACTTAT+GGG 0.294742 8_1:+13363613 Msa1179790:three_prime_UTR
ATTAAATCAGCACATGCATT+AGG 0.305553 8_1:+13362731 Msa1179790:CDS
TCAGTTAGGCCATAAATTCT+AGG 0.325129 8_1:+13363468 Msa1179790:exon
TTGATTGTGACAGTGATAAT+TGG 0.327162 8_1:+13362421 Msa1179790:CDS
CTTGTTAAGGCTGAAATTCA+TGG 0.329750 8_1:+13363300 Msa1179790:CDS
GGTATTATTCTGTGATGAAT+TGG 0.334976 8_1:-13362704 None:intergenic
ATATATACCTTGCACATGTT+TGG 0.342939 8_1:-13362944 None:intergenic
TCCTTCTTGATTAACATAAC+CGG 0.353869 8_1:-13362855 None:intergenic
CAAAGACCCTTCACTTGTTA+AGG 0.372055 8_1:+13363287 Msa1179790:CDS
ATGATGGAGTTTCATTCAAA+TGG 0.387824 8_1:+13362641 Msa1179790:CDS
TTTGATTAACAAAATTATGA+TGG 0.399120 8_1:+13363362 Msa1179790:CDS
ATCTACCTTGGTGATGGTGC+TGG 0.412159 8_1:+13363183 Msa1179790:CDS
TTTATAGTAAGAGAAGGTGT+TGG 0.434123 8_1:-13362178 None:intergenic
ACAAGAAATAGAAGCTAAAT+GGG 0.435519 8_1:-13362284 None:intergenic
ATGCATTAGGGTGTGATTTG+AGG 0.444003 8_1:+13362744 Msa1179790:CDS
CCTTCTTGATTAACATAACC+GGG 0.454827 8_1:-13362854 None:intergenic
CACACTGGAAAATTCTTCCT+TGG 0.458582 8_1:-13363252 None:intergenic
TTAAATCAGCACATGCATTA+GGG 0.465493 8_1:+13362732 Msa1179790:CDS
TGCCTAAAGCTGTCTCAGTT+AGG 0.466799 8_1:+13363454 Msa1179790:CDS
TTGGTGTGATGGAGAAGAAT+TGG 0.468537 8_1:+13363323 Msa1179790:CDS
GTGAAGTCTTACTGAAATCA+TGG 0.470190 8_1:-13362898 None:intergenic
TTAGGCAAAGATACAAGAAC+TGG 0.474583 8_1:-13363438 None:intergenic
ATCACTGTCACAATCAATGA+TGG 0.486684 8_1:-13362415 None:intergenic
CCCGGTTATGTTAATCAAGA+AGG 0.488748 8_1:+13362854 Msa1179790:CDS
TTATAGTAAGAGAAGGTGTT+GGG 0.491204 8_1:-13362177 None:intergenic
AACAAGAGGTTTATCTACCT+TGG 0.491425 8_1:+13363171 Msa1179790:CDS
GCATGTGCTGATTTAATAGC+AGG 0.497078 8_1:-13362725 None:intergenic
AACTCCTTCCCACTATGCCT+TGG 0.498025 8_1:+13362481 Msa1179790:CDS
GTGGAAACTAGTTAGAGATA+TGG 0.501636 8_1:+13363592 Msa1179790:three_prime_UTR
GGCCTAACTGAGACAGCTTT+AGG 0.505096 8_1:-13363456 None:intergenic
GAGACTATTGCCCTAGCTTG+AGG 0.514408 8_1:+13363205 Msa1179790:CDS
GAAATTCATGGTTGGTGTGA+TGG 0.515965 8_1:+13363312 Msa1179790:CDS
ATTATAGGACAAGATGATGA+TGG 0.517951 8_1:+13362625 Msa1179790:intron
ATTTCAGCCTTAACAAGTGA+AGG 0.518564 8_1:-13363294 None:intergenic
TATACCTTGCACATGTTTGG+AGG 0.520088 8_1:-13362941 None:intergenic
GACAGAGTTCCAAGGCATAG+TGG 0.523772 8_1:-13362490 None:intergenic
TTTCTCTAAGCCTCAAGCTA+GGG 0.531672 8_1:-13363215 None:intergenic
ATTACATTTAAGTTAATCAA+AGG 0.533281 8_1:-13363536 None:intergenic
AGGTTTATCTACCTTGGTGA+TGG 0.549393 8_1:+13363177 Msa1179790:CDS
TAGGTATTTATAGTAAGAGA+AGG 0.550239 8_1:-13362184 None:intergenic
GATTAACAAAATTATGATGG+AGG 0.550625 8_1:+13363365 Msa1179790:CDS
GCTAAATGGGTATCTGAAAG+TGG 0.567691 8_1:-13362271 None:intergenic
ACAGAGTTCCAAGGCATAGT+GGG 0.570869 8_1:-13362489 None:intergenic
TTTCTGAAGTCGTTAACAAG+AGG 0.572324 8_1:+13363157 Msa1179790:CDS
TCAGAGATTAACTCTAATCC+CGG 0.577684 8_1:+13362836 Msa1179790:CDS
TGCAAATGTCAGTGAAAATG+TGG 0.584753 8_1:+13363573 Msa1179790:three_prime_UTR
GTCTTACTGAAATCATGGTA+AGG 0.591132 8_1:-13362893 None:intergenic
TTTCAGCCTTAACAAGTGAA+GGG 0.593746 8_1:-13363293 None:intergenic
TTAAGGCTGAAATTCATGGT+TGG 0.600341 8_1:+13363304 Msa1179790:CDS
GATTTCAGTAAGACTTCACA+TGG 0.619024 8_1:+13362902 Msa1179790:CDS
AGTTCCAAGGCATAGTGGGA+AGG 0.620394 8_1:-13362485 None:intergenic
TATGCCTTGGAACTCTGTCA+TGG 0.627315 8_1:+13362494 Msa1179790:CDS
CTGTCCTCCAAACATGTGCA+AGG 0.634726 8_1:+13362937 Msa1179790:CDS
TTGCATATAAAATCCCACAC+TGG 0.662498 8_1:-13363267 None:intergenic
CATACCATGACAGAGTTCCA+AGG 0.665251 8_1:-13362498 None:intergenic
AGTCTCCAGCACCATCACCA+AGG 0.694728 8_1:-13363188 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAAATCATTATTTC+AGG + chr8_1:13363104-13363123 Msa1179790:intron 10.0%
!!! TTTTTAAAATCATTATTTCA+GGG + chr8_1:13363105-13363124 Msa1179790:intron 10.0%
!!! TTTTTTAAAATCATTATTTC+AGG + chr8_1:13363104-13363123 Msa1179790:intron 10.0%
!!! TTTTTAAAATCATTATTTCA+GGG + chr8_1:13363105-13363124 Msa1179790:intron 10.0%
!!! TAATATATGATTAACTTGTT+TGG + chr8_1:13362595-13362614 Msa1179790:intron 15.0%
!! TTTGATTAACAAAATTATGA+TGG + chr8_1:13363362-13363381 Msa1179790:CDS 15.0%
!!! ATTACATTTAAGTTAATCAA+AGG - chr8_1:13363539-13363558 None:intergenic 15.0%
!! TTGATTAACTTAAATGTAAT+AGG + chr8_1:13363539-13363558 Msa1179790:three_prime_UTR 15.0%
!!! TAATATATGATTAACTTGTT+TGG + chr8_1:13362595-13362614 Msa1179790:intron 15.0%
!! TTTGATTAACAAAATTATGA+TGG + chr8_1:13363362-13363381 Msa1179790:CDS 15.0%
!!! ATTACATTTAAGTTAATCAA+AGG - chr8_1:13363539-13363558 None:intergenic 15.0%
!! TTGATTAACTTAAATGTAAT+AGG + chr8_1:13363539-13363558 Msa1179790:three_prime_UTR 15.0%
!!! ACAGATTATTTTACAAAACA+GGG - chr8_1:13362544-13362563 None:intergenic 20.0%
!!! AACAGATTATTTTACAAAAC+AGG - chr8_1:13362545-13362564 None:intergenic 20.0%
!!! GAAACTATTTTGAAGTATTT+AGG + chr8_1:13362797-13362816 Msa1179790:CDS 20.0%
!!! AATAATGAATAATTTGGTGT+AGG + chr8_1:13363028-13363047 Msa1179790:intron 20.0%
!!! TTTAAAATAAAGACAAAGAG+TGG - chr8_1:13363055-13363074 None:intergenic 20.0%
!!! ACAGATTATTTTACAAAACA+GGG - chr8_1:13362544-13362563 None:intergenic 20.0%
!!! AACAGATTATTTTACAAAAC+AGG - chr8_1:13362545-13362564 None:intergenic 20.0%
!!! GAAACTATTTTGAAGTATTT+AGG + chr8_1:13362797-13362816 Msa1179790:CDS 20.0%
!!! AATAATGAATAATTTGGTGT+AGG + chr8_1:13363028-13363047 Msa1179790:intron 20.0%
!!! TTTAAAATAAAGACAAAGAG+TGG - chr8_1:13363055-13363074 None:intergenic 20.0%
! TAGGTATTTATAGTAAGAGA+AGG - chr8_1:13362187-13362206 None:intergenic 25.0%
!!! TTCAAAATTGGTTTTTTGCT+TGG - chr8_1:13362250-13362269 None:intergenic 25.0%
! ACAAGAAATAGAAGCTAAAT+GGG - chr8_1:13362287-13362306 None:intergenic 25.0%
!!! TGAACTAGTTTTTTCTTTCT+GGG + chr8_1:13362306-13362325 Msa1179790:five_prime_UTR 25.0%
! AATTGGTTGATTGATGAATT+AGG + chr8_1:13362438-13362457 Msa1179790:CDS 25.0%
!!! ATGATTAACTTGTTTGGTTT+TGG + chr8_1:13362601-13362620 Msa1179790:intron 25.0%
!!! TTGTTTGGTTTTGGAATTAT+AGG + chr8_1:13362610-13362629 Msa1179790:intron 25.0%
!!! AACTTTTTCAATCTCTTCAA+TGG - chr8_1:13362672-13362691 None:intergenic 25.0%
! TATATTGGCATAAAATCTAG+TGG - chr8_1:13363003-13363022 None:intergenic 25.0%
! GATTAACAAAATTATGATGG+AGG + chr8_1:13363365-13363384 Msa1179790:CDS 25.0%
! TAGGTATTTATAGTAAGAGA+AGG - chr8_1:13362187-13362206 None:intergenic 25.0%
!!! TTCAAAATTGGTTTTTTGCT+TGG - chr8_1:13362250-13362269 None:intergenic 25.0%
! ACAAGAAATAGAAGCTAAAT+GGG - chr8_1:13362287-13362306 None:intergenic 25.0%
!!! TGAACTAGTTTTTTCTTTCT+GGG + chr8_1:13362306-13362325 Msa1179790:five_prime_UTR 25.0%
! AATTGGTTGATTGATGAATT+AGG + chr8_1:13362438-13362457 Msa1179790:CDS 25.0%
!!! ATGATTAACTTGTTTGGTTT+TGG + chr8_1:13362601-13362620 Msa1179790:intron 25.0%
!!! TTGTTTGGTTTTGGAATTAT+AGG + chr8_1:13362610-13362629 Msa1179790:intron 25.0%
!!! AACTTTTTCAATCTCTTCAA+TGG - chr8_1:13362672-13362691 None:intergenic 25.0%
! TATATTGGCATAAAATCTAG+TGG - chr8_1:13363003-13363022 None:intergenic 25.0%
! GATTAACAAAATTATGATGG+AGG + chr8_1:13363365-13363384 Msa1179790:CDS 25.0%
!! TTATAGTAAGAGAAGGTGTT+GGG - chr8_1:13362180-13362199 None:intergenic 30.0%
! TTTATAGTAAGAGAAGGTGT+TGG - chr8_1:13362181-13362200 None:intergenic 30.0%
TCTGAAAGTGGTTTCAAAAT+TGG - chr8_1:13362262-13362281 None:intergenic 30.0%
CACAAGAAATAGAAGCTAAA+TGG - chr8_1:13362288-13362307 None:intergenic 30.0%
!!! GTGAACTAGTTTTTTCTTTC+TGG + chr8_1:13362305-13362324 Msa1179790:five_prime_UTR 30.0%
!!! TAGTCATTTTTCTCTTTGAG+AGG - chr8_1:13362362-13362381 None:intergenic 30.0%
TTGATTGTGACAGTGATAAT+TGG + chr8_1:13362421-13362440 Msa1179790:CDS 30.0%
ATTATAGGACAAGATGATGA+TGG + chr8_1:13362625-13362644 Msa1179790:intron 30.0%
! ATGATGGAGTTTCATTCAAA+TGG + chr8_1:13362641-13362660 Msa1179790:CDS 30.0%
AGATTGAAAAAGTTCTGCAA+AGG + chr8_1:13362678-13362697 Msa1179790:CDS 30.0%
GGTATTATTCTGTGATGAAT+TGG - chr8_1:13362707-13362726 None:intergenic 30.0%
ATTAAATCAGCACATGCATT+AGG + chr8_1:13362731-13362750 Msa1179790:CDS 30.0%
TTAAATCAGCACATGCATTA+GGG + chr8_1:13362732-13362751 Msa1179790:CDS 30.0%
TCCTTCTTGATTAACATAAC+CGG - chr8_1:13362858-13362877 None:intergenic 30.0%
ATATATACCTTGCACATGTT+TGG - chr8_1:13362947-13362966 None:intergenic 30.0%
GCTATCATTGCAAATGTAAT+AGG + chr8_1:13363502-13363521 Msa1179790:three_prime_UTR 30.0%
!! CGAGTTTGTTAAAAACCAAA+TGG + chr8_1:13363670-13363689 Msa1179790:three_prime_UTR 30.0%
!! TTATAGTAAGAGAAGGTGTT+GGG - chr8_1:13362180-13362199 None:intergenic 30.0%
! TTTATAGTAAGAGAAGGTGT+TGG - chr8_1:13362181-13362200 None:intergenic 30.0%
TCTGAAAGTGGTTTCAAAAT+TGG - chr8_1:13362262-13362281 None:intergenic 30.0%
CACAAGAAATAGAAGCTAAA+TGG - chr8_1:13362288-13362307 None:intergenic 30.0%
!!! GTGAACTAGTTTTTTCTTTC+TGG + chr8_1:13362305-13362324 Msa1179790:five_prime_UTR 30.0%
!!! TAGTCATTTTTCTCTTTGAG+AGG - chr8_1:13362362-13362381 None:intergenic 30.0%
TTGATTGTGACAGTGATAAT+TGG + chr8_1:13362421-13362440 Msa1179790:CDS 30.0%
ATTATAGGACAAGATGATGA+TGG + chr8_1:13362625-13362644 Msa1179790:intron 30.0%
! ATGATGGAGTTTCATTCAAA+TGG + chr8_1:13362641-13362660 Msa1179790:CDS 30.0%
AGATTGAAAAAGTTCTGCAA+AGG + chr8_1:13362678-13362697 Msa1179790:CDS 30.0%
GGTATTATTCTGTGATGAAT+TGG - chr8_1:13362707-13362726 None:intergenic 30.0%
ATTAAATCAGCACATGCATT+AGG + chr8_1:13362731-13362750 Msa1179790:CDS 30.0%
TTAAATCAGCACATGCATTA+GGG + chr8_1:13362732-13362751 Msa1179790:CDS 30.0%
TCCTTCTTGATTAACATAAC+CGG - chr8_1:13362858-13362877 None:intergenic 30.0%
ATATATACCTTGCACATGTT+TGG - chr8_1:13362947-13362966 None:intergenic 30.0%
GCTATCATTGCAAATGTAAT+AGG + chr8_1:13363502-13363521 Msa1179790:three_prime_UTR 30.0%
ATCACTGTCACAATCAATGA+TGG - chr8_1:13362418-13362437 None:intergenic 35.0%
TCAGAGATTAACTCTAATCC+CGG + chr8_1:13362836-13362855 Msa1179790:CDS 35.0%
CCTTCTTGATTAACATAACC+GGG - chr8_1:13362857-13362876 None:intergenic 35.0%
GTCTTACTGAAATCATGGTA+AGG - chr8_1:13362896-13362915 None:intergenic 35.0%
GTGAAGTCTTACTGAAATCA+TGG - chr8_1:13362901-13362920 None:intergenic 35.0%
GATTTCAGTAAGACTTCACA+TGG + chr8_1:13362902-13362921 Msa1179790:CDS 35.0%
!! TTTCTGAAGTCGTTAACAAG+AGG + chr8_1:13363157-13363176 Msa1179790:CDS 35.0%
AACAAGAGGTTTATCTACCT+TGG + chr8_1:13363171-13363190 Msa1179790:CDS 35.0%
AAAAAGACTTTGTGATGCCA+AGG + chr8_1:13363235-13363254 Msa1179790:CDS 35.0%
! AAGGAAGAATTTTCCAGTGT+GGG + chr8_1:13363254-13363273 Msa1179790:CDS 35.0%
TTGCATATAAAATCCCACAC+TGG - chr8_1:13363270-13363289 None:intergenic 35.0%
TTTCAGCCTTAACAAGTGAA+GGG - chr8_1:13363296-13363315 None:intergenic 35.0%
ATTTCAGCCTTAACAAGTGA+AGG - chr8_1:13363297-13363316 None:intergenic 35.0%
CTTGTTAAGGCTGAAATTCA+TGG + chr8_1:13363300-13363319 Msa1179790:CDS 35.0%
TTAAGGCTGAAATTCATGGT+TGG + chr8_1:13363304-13363323 Msa1179790:CDS 35.0%
TTAGGCAAAGATACAAGAAC+TGG - chr8_1:13363441-13363460 None:intergenic 35.0%
TCAGTTAGGCCATAAATTCT+AGG + chr8_1:13363468-13363487 Msa1179790:exon 35.0%
ACTAGCAAGCCTAGAATTTA+TGG - chr8_1:13363480-13363499 None:intergenic 35.0%
TGCAAATGTCAGTGAAAATG+TGG + chr8_1:13363573-13363592 Msa1179790:three_prime_UTR 35.0%
GTGGAAACTAGTTAGAGATA+TGG + chr8_1:13363592-13363611 Msa1179790:three_prime_UTR 35.0%
TGGTCGTCTTTGTTAACTTA+TGG + chr8_1:13363612-13363631 Msa1179790:three_prime_UTR 35.0%
GGTCGTCTTTGTTAACTTAT+GGG + chr8_1:13363613-13363632 Msa1179790:three_prime_UTR 35.0%
ATCACTGTCACAATCAATGA+TGG - chr8_1:13362418-13362437 None:intergenic 35.0%
TCAGAGATTAACTCTAATCC+CGG + chr8_1:13362836-13362855 Msa1179790:CDS 35.0%
CCTTCTTGATTAACATAACC+GGG - chr8_1:13362857-13362876 None:intergenic 35.0%
GTCTTACTGAAATCATGGTA+AGG - chr8_1:13362896-13362915 None:intergenic 35.0%
GTGAAGTCTTACTGAAATCA+TGG - chr8_1:13362901-13362920 None:intergenic 35.0%
GATTTCAGTAAGACTTCACA+TGG + chr8_1:13362902-13362921 Msa1179790:CDS 35.0%
!! TTTCTGAAGTCGTTAACAAG+AGG + chr8_1:13363157-13363176 Msa1179790:CDS 35.0%
AACAAGAGGTTTATCTACCT+TGG + chr8_1:13363171-13363190 Msa1179790:CDS 35.0%
AAAAAGACTTTGTGATGCCA+AGG + chr8_1:13363235-13363254 Msa1179790:CDS 35.0%
! AAGGAAGAATTTTCCAGTGT+GGG + chr8_1:13363254-13363273 Msa1179790:CDS 35.0%
TTGCATATAAAATCCCACAC+TGG - chr8_1:13363270-13363289 None:intergenic 35.0%
TTTCAGCCTTAACAAGTGAA+GGG - chr8_1:13363296-13363315 None:intergenic 35.0%
ATTTCAGCCTTAACAAGTGA+AGG - chr8_1:13363297-13363316 None:intergenic 35.0%
CTTGTTAAGGCTGAAATTCA+TGG + chr8_1:13363300-13363319 Msa1179790:CDS 35.0%
TTAAGGCTGAAATTCATGGT+TGG + chr8_1:13363304-13363323 Msa1179790:CDS 35.0%
TTAGGCAAAGATACAAGAAC+TGG - chr8_1:13363441-13363460 None:intergenic 35.0%
TCAGTTAGGCCATAAATTCT+AGG + chr8_1:13363468-13363487 Msa1179790:exon 35.0%
ACTAGCAAGCCTAGAATTTA+TGG - chr8_1:13363480-13363499 None:intergenic 35.0%
TGCAAATGTCAGTGAAAATG+TGG + chr8_1:13363573-13363592 Msa1179790:three_prime_UTR 35.0%
GTGGAAACTAGTTAGAGATA+TGG + chr8_1:13363592-13363611 Msa1179790:three_prime_UTR 35.0%
TGGTCGTCTTTGTTAACTTA+TGG + chr8_1:13363612-13363631 Msa1179790:three_prime_UTR 35.0%
GGTCGTCTTTGTTAACTTAT+GGG + chr8_1:13363613-13363632 Msa1179790:three_prime_UTR 35.0%
GCTAAATGGGTATCTGAAAG+TGG - chr8_1:13362274-13362293 None:intergenic 40.0%
TACAAAACAGGGCACATGAA+TGG - chr8_1:13362533-13362552 None:intergenic 40.0%
!! GCATGTGCTGATTTAATAGC+AGG - chr8_1:13362728-13362747 None:intergenic 40.0%
ATGCATTAGGGTGTGATTTG+AGG + chr8_1:13362744-13362763 Msa1179790:CDS 40.0%
CCCGGTTATGTTAATCAAGA+AGG + chr8_1:13362854-13362873 Msa1179790:CDS 40.0%
TATACCTTGCACATGTTTGG+AGG - chr8_1:13362944-13362963 None:intergenic 40.0%
AGGTTTATCTACCTTGGTGA+TGG + chr8_1:13363177-13363196 Msa1179790:CDS 40.0%
TTTCTCTAAGCCTCAAGCTA+GGG - chr8_1:13363218-13363237 None:intergenic 40.0%
! TTTTCTCTAAGCCTCAAGCT+AGG - chr8_1:13363219-13363238 None:intergenic 40.0%
CACACTGGAAAATTCTTCCT+TGG - chr8_1:13363255-13363274 None:intergenic 40.0%
! CAAGGAAGAATTTTCCAGTG+TGG + chr8_1:13363253-13363272 Msa1179790:CDS 40.0%
! CAAAGACCCTTCACTTGTTA+AGG + chr8_1:13363287-13363306 Msa1179790:CDS 40.0%
! GAAATTCATGGTTGGTGTGA+TGG + chr8_1:13363312-13363331 Msa1179790:CDS 40.0%
! TTGGTGTGATGGAGAAGAAT+TGG + chr8_1:13363323-13363342 Msa1179790:CDS 40.0%
GCTAAATGGGTATCTGAAAG+TGG - chr8_1:13362274-13362293 None:intergenic 40.0%
TACAAAACAGGGCACATGAA+TGG - chr8_1:13362533-13362552 None:intergenic 40.0%
!! GCATGTGCTGATTTAATAGC+AGG - chr8_1:13362728-13362747 None:intergenic 40.0%
ATGCATTAGGGTGTGATTTG+AGG + chr8_1:13362744-13362763 Msa1179790:CDS 40.0%
CCCGGTTATGTTAATCAAGA+AGG + chr8_1:13362854-13362873 Msa1179790:CDS 40.0%
TATACCTTGCACATGTTTGG+AGG - chr8_1:13362944-13362963 None:intergenic 40.0%
AGGTTTATCTACCTTGGTGA+TGG + chr8_1:13363177-13363196 Msa1179790:CDS 40.0%
TTTCTCTAAGCCTCAAGCTA+GGG - chr8_1:13363218-13363237 None:intergenic 40.0%
! TTTTCTCTAAGCCTCAAGCT+AGG - chr8_1:13363219-13363238 None:intergenic 40.0%
CACACTGGAAAATTCTTCCT+TGG - chr8_1:13363255-13363274 None:intergenic 40.0%
! CAAGGAAGAATTTTCCAGTG+TGG + chr8_1:13363253-13363272 Msa1179790:CDS 40.0%
! CAAAGACCCTTCACTTGTTA+AGG + chr8_1:13363287-13363306 Msa1179790:CDS 40.0%
! GAAATTCATGGTTGGTGTGA+TGG + chr8_1:13363312-13363331 Msa1179790:CDS 40.0%
! TTGGTGTGATGGAGAAGAAT+TGG + chr8_1:13363323-13363342 Msa1179790:CDS 40.0%
ACAGAGTTCCAAGGCATAGT+GGG - chr8_1:13362492-13362511 None:intergenic 45.0%
TATGCCTTGGAACTCTGTCA+TGG + chr8_1:13362494-13362513 Msa1179790:CDS 45.0%
CATACCATGACAGAGTTCCA+AGG - chr8_1:13362501-13362520 None:intergenic 45.0%
TGCCTAAAGCTGTCTCAGTT+AGG + chr8_1:13363454-13363473 Msa1179790:CDS 45.0%
ACAGAGTTCCAAGGCATAGT+GGG - chr8_1:13362492-13362511 None:intergenic 45.0%
TATGCCTTGGAACTCTGTCA+TGG + chr8_1:13362494-13362513 Msa1179790:CDS 45.0%
CATACCATGACAGAGTTCCA+AGG - chr8_1:13362501-13362520 None:intergenic 45.0%
TGCCTAAAGCTGTCTCAGTT+AGG + chr8_1:13363454-13363473 Msa1179790:CDS 45.0%
!! ATTCATTATTATATTTATAT+TGG - chr8_1:13363018-13363037 None:intergenic 5.0%
!! AAATATAATAATGAATAATT+TGG + chr8_1:13363022-13363041 Msa1179790:intron 5.0%
!! ATTCATTATTATATTTATAT+TGG - chr8_1:13363018-13363037 None:intergenic 5.0%
!! AAATATAATAATGAATAATT+TGG + chr8_1:13363022-13363041 Msa1179790:intron 5.0%
AGAGAGAGAGAGAGAGAGGT+AGG - chr8_1:13362206-13362225 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr8_1:13362208-13362227 None:intergenic 50.0%
AACTCCTTCCCACTATGCCT+TGG + chr8_1:13362481-13362500 Msa1179790:CDS 50.0%
! AGTTCCAAGGCATAGTGGGA+AGG - chr8_1:13362488-13362507 None:intergenic 50.0%
GACAGAGTTCCAAGGCATAG+TGG - chr8_1:13362493-13362512 None:intergenic 50.0%
CTGTCCTCCAAACATGTGCA+AGG + chr8_1:13362937-13362956 Msa1179790:CDS 50.0%
!! ATCTACCTTGGTGATGGTGC+TGG + chr8_1:13363183-13363202 Msa1179790:CDS 50.0%
GAGACTATTGCCCTAGCTTG+AGG + chr8_1:13363205-13363224 Msa1179790:CDS 50.0%
GGCCTAACTGAGACAGCTTT+AGG - chr8_1:13363459-13363478 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGGT+AGG - chr8_1:13362206-13362225 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr8_1:13362208-13362227 None:intergenic 50.0%
AACTCCTTCCCACTATGCCT+TGG + chr8_1:13362481-13362500 Msa1179790:CDS 50.0%
! AGTTCCAAGGCATAGTGGGA+AGG - chr8_1:13362488-13362507 None:intergenic 50.0%
GACAGAGTTCCAAGGCATAG+TGG - chr8_1:13362493-13362512 None:intergenic 50.0%
CTGTCCTCCAAACATGTGCA+AGG + chr8_1:13362937-13362956 Msa1179790:CDS 50.0%
!! ATCTACCTTGGTGATGGTGC+TGG + chr8_1:13363183-13363202 Msa1179790:CDS 50.0%
GAGACTATTGCCCTAGCTTG+AGG + chr8_1:13363205-13363224 Msa1179790:CDS 50.0%
GGCCTAACTGAGACAGCTTT+AGG - chr8_1:13363459-13363478 None:intergenic 50.0%
AGTCTCCAGCACCATCACCA+AGG - chr8_1:13363191-13363210 None:intergenic 55.0%
AGTCTCCAGCACCATCACCA+AGG - chr8_1:13363191-13363210 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 13362161 13363689 13362161 ID=Msa1179790;Name=Msa1179790
chr8_1 mRNA 13362161 13363689 13362161 ID=Msa1179790-mRNA-1;Parent=Msa1179790;Name=Msa1179790-mRNA-1;_AED=0.22;_eAED=0.22;_QI=214|1|1|1|1|1|3|207|274
chr8_1 exon 13362161 13362515 13362161 ID=Msa1179790-mRNA-1:exon:4829;Parent=Msa1179790-mRNA-1
chr8_1 exon 13362632 13362958 13362632 ID=Msa1179790-mRNA-1:exon:4830;Parent=Msa1179790-mRNA-1
chr8_1 exon 13363126 13363689 13363126 ID=Msa1179790-mRNA-1:exon:4831;Parent=Msa1179790-mRNA-1
chr8_1 five_prime_UTR 13362161 13362374 13362161 ID=Msa1179790-mRNA-1:five_prime_utr;Parent=Msa1179790-mRNA-1
chr8_1 CDS 13362375 13362515 13362375 ID=Msa1179790-mRNA-1:cds;Parent=Msa1179790-mRNA-1
chr8_1 CDS 13362632 13362958 13362632 ID=Msa1179790-mRNA-1:cds;Parent=Msa1179790-mRNA-1
chr8_1 CDS 13363126 13363482 13363126 ID=Msa1179790-mRNA-1:cds;Parent=Msa1179790-mRNA-1
chr8_1 three_prime_UTR 13363483 13363689 13363483 ID=Msa1179790-mRNA-1:three_prime_utr;Parent=Msa1179790-mRNA-1
Gene Sequence

>Msa1179790

ATGACTAATAACATTGTTATTGTTTTCGACTTTGACAAAACCATCATTGATTGTGACAGTGATAATTGGTTGATTGATGAATTAGGTTTCACTGATTTGTTTAATCAACTCCTTCCCACTATGCCTTGGAACTCTGTCATGGACAAGATGATGATGGAGTTTCATTCAAATGGAATAACCATTGAAGAGATTGAAAAAGTTCTGCAAAGGATTCCAATTCATCACAGAATAATACCTGCTATTAAATCAGCACATGCATTAGGGTGTGATTTGAGGATTGTTAGTGATGCTAATATGTTTTACATTGAAACTATTTTGAAGTATTTAGGAATAAGTGAATGCTTCTCAGAGATTAACTCTAATCCCGGTTATGTTAATCAAGAAGGAAGAGTTAGAATTTCACCTTACCATGATTTCAGTAAGACTTCACATGGTTGCAACAATGTCTGTCCTCCAAACATGTGCAAGGGATTAATCATTGATAAAATTCAAAATTCAATTTCTGAAGTCGTTAACAAGAGGTTTATCTACCTTGGTGATGGTGCTGGAGACTATTGCCCTAGCTTGAGGCTTAGAGAAAAAGACTTTGTGATGCCAAGGAAGAATTTTCCAGTGTGGGATTTTATATGCAAAGACCCTTCACTTGTTAAGGCTGAAATTCATGGTTGGTGTGATGGAGAAGAATTGGAACAAGTTTTGCTGAATTTGATTAACAAAATTATGATGGAGGAACATGTTCAACTTATTTCTTCTGATTGCAAGCTACAAACTCTATCTAGTCCAGTTCTTGTATCTTTGCCTAAAGCTGTCTCAGTTAGGCCATAA
Protein sequence

>Msa1179790

MTNNIVIVFDFDKTIIDCDSDNWLIDELGFTDLFNQLLPTMPWNSVMDKMMMEFHSNGITIEEIEKVLQRIPIHHRIIPAIKSAHALGCDLRIVSDANMFYIETILKYLGISECFSEINSNPGYVNQEGRVRISPYHDFSKTSHGCNNVCPPNMCKGLIIDKIQNSISEVVNKRFIYLGDGAGDYCPSLRLREKDFVMPRKNFPVWDFICKDPSLVKAEIHGWCDGEELEQVLLNLINKIMMEEHVQLISSDCKLQTLSSPVLVSLPKAVSVRP*