AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0437260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437260 MtrunA17_Chr3g0113291 80.263 152 20 2 1 142 1 152 3.80e-83 240
Msa0437260 MtrunA17_Chr5g0436971 64.912 114 35 1 33 141 15 128 2.43e-48 152
Msa0437260 MtrunA17_Chr7g0242231 60.606 99 34 1 33 126 15 113 4.01e-38 125
Msa0437260 MtrunA17_Chr2g0316921 48.214 112 53 1 35 141 17 128 9.58e-32 109
Msa0437260 MtrunA17_Chr4g0046851 45.872 109 56 1 36 141 18 126 4.01e-29 103
Msa0437260 MtrunA17_Chr8g0360291 54.217 83 38 0 37 119 19 101 2.05e-28 101
Msa0437260 MtrunA17_Chr3g0127211 45.783 83 45 0 37 119 15 97 1.93e-24 90.5
Msa0437260 MtrunA17_Chr8g0346501 47.778 90 42 2 33 118 7 95 1.73e-23 88.2
Msa0437260 MtrunA17_Chr1g0188931 39.759 83 50 0 37 119 15 97 5.42e-23 87.0
Msa0437260 MtrunA17_Chr2g0316891 42.353 85 44 1 62 141 42 126 2.42e-15 67.8
Msa0437260 MtrunA17_Chr1g0188951 45.833 48 26 0 66 113 1 48 2.09e-12 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437260 AT2G40110.1 67.826 115 31 2 33 141 15 129 2.18e-52 162
Msa0437260 AT2G40110.2 75.309 81 20 0 33 113 15 95 6.03e-42 135
Msa0437260 AT3G11230.1 56.140 114 45 1 33 141 15 128 5.52e-41 133
Msa0437260 AT3G11230.2 56.140 114 45 1 33 141 48 161 9.46e-41 134
Msa0437260 AT3G08990.2 52.632 114 49 1 33 141 15 128 3.96e-39 129
Msa0437260 AT3G08990.1 52.632 114 49 1 33 141 15 128 3.96e-39 129
Msa0437260 AT3G08990.3 52.632 114 49 1 33 141 15 128 3.96e-39 129
Msa0437260 AT2G40110.4 79.710 69 14 0 33 101 15 83 2.68e-37 123
Msa0437260 AT2G40110.3 79.710 69 14 0 33 101 15 83 2.68e-37 123
Msa0437260 AT3G55890.4 54.902 102 41 1 35 131 17 118 4.42e-35 118
Msa0437260 AT3G55890.1 54.902 102 41 1 35 131 17 118 4.42e-35 118
Msa0437260 AT5G53940.1 61.176 85 33 0 35 119 17 101 2.02e-34 117
Msa0437260 AT3G11230.4 64.198 81 29 0 33 113 15 95 2.49e-34 115
Msa0437260 AT3G11230.3 64.198 81 29 0 33 113 48 128 5.31e-34 116
Msa0437260 AT3G55890.3 63.291 79 29 0 35 113 17 95 5.37e-34 115
Msa0437260 AT3G55890.2 63.291 79 29 0 35 113 17 95 5.37e-34 115
Msa0437260 AT4G27745.2 49.351 77 39 0 37 113 15 91 4.21e-24 90.1
Msa0437260 AT4G27745.3 49.351 77 39 0 37 113 15 91 4.21e-24 90.1
Msa0437260 AT4G27745.1 49.351 77 39 0 37 113 15 91 4.21e-24 90.1
Msa0437260 AT4G27745.4 49.351 77 39 0 37 113 15 91 4.21e-24 90.1
Msa0437260 AT4G27740.1 43.284 67 38 0 35 101 13 79 1.50e-14 65.5

Find 29 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTTCCTTCCTTGTACTT+TGG 0.350833 3_2:-91450591 None:intergenic
TCATCTTCTTCGCAGATTCA+TGG 0.367324 3_2:+91448832 Msa0437260:intron
CATCTTCTTCGCAGATTCAT+GGG 0.371578 3_2:+91448833 Msa0437260:intron
GAGGAGAGACCGATGATGAC+TGG 0.424174 3_2:+91450403 Msa0437260:CDS
GTCCTGATGGTAGCAATTAT+CGG 0.430362 3_2:+91451026 Msa0437260:CDS
GAGATAAGCTTTCCCATGCC+TGG 0.451402 3_2:-91449795 None:intergenic
GACAGCGTGAATGTTTCTCT+TGG 0.452417 3_2:+91450373 Msa0437260:intron
TTGTTTGTGATCAATCTAGA+AGG 0.468502 3_2:+91448860 Msa0437260:CDS
GTGGGTTGTGGATCGATTGT+GGG 0.474305 3_2:+91450454 Msa0437260:CDS
ATCCGATAATTGCTACCATC+AGG 0.497420 3_2:-91451028 None:intergenic
TGTGGGTTGTGGATCGATTG+TGG 0.505248 3_2:+91450453 Msa0437260:CDS
TAGACTTTCCACTCCAGGCA+TGG 0.508508 3_2:+91449782 Msa0437260:intron
AGACTTTCCACTCCAGGCAT+GGG 0.512987 3_2:+91449783 Msa0437260:intron
TGTCTTCATATAAAGCAAGA+TGG 0.516171 3_2:-91448913 None:intergenic
GTTGTGGATCGATTGTGGGT+TGG 0.527280 3_2:+91450458 Msa0437260:CDS
ATATGAAGACATCGTTTCCA+AGG 0.539876 3_2:+91448925 Msa0437260:CDS
GTCTTCATATAAAGCAAGAT+GGG 0.551967 3_2:-91448912 None:intergenic
AACAATGGAGCACATGTTGG+CGG 0.552605 3_2:+91451052 Msa0437260:CDS
AAGGAAAGTCTGTGCTTGAA+AGG 0.559471 3_2:+91450604 Msa0437260:CDS
ATCAACAATGGAGCACATGT+TGG 0.564033 3_2:+91451049 Msa0437260:CDS
AGCAATTATCGGATCAACAA+TGG 0.565705 3_2:+91451037 Msa0437260:CDS
AGGAGAGACCGATGATGACT+GGG 0.570959 3_2:+91450404 Msa0437260:CDS
AAAAGACCAAAGTACAAGGA+AGG 0.573629 3_2:+91450585 Msa0437260:CDS
ATCTTCTTCGCAGATTCATG+GGG 0.576917 3_2:+91448834 Msa0437260:intron
AAGCTTTCCCATGCCTGGAG+TGG 0.589161 3_2:-91449790 None:intergenic
TACAAGGTATCAGGTCCTGA+TGG 0.616196 3_2:+91451013 Msa0437260:intron
GTATGCAACCCAGTCATCAT+CGG 0.616477 3_2:-91450412 None:intergenic
TGTTTCTCTTGGCGAAACAG+AGG 0.620615 3_2:+91450384 Msa0437260:CDS
TGCAGTTGTTGTAAGAAACG+TGG 0.670568 3_2:-91448709 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTGTAATTATTTTTC+TGG + chr3_2:91448980-91448999 Msa0437260:intron 10.0%
!!! AATTAAAAAACTAACATTTT+CGG - chr3_2:91450285-91450304 None:intergenic 10.0%
!!! TTTTTTTGTAATTATTTTTC+TGG + chr3_2:91448980-91448999 Msa0437260:intron 10.0%
!!! AATTAAAAAACTAACATTTT+CGG - chr3_2:91450285-91450304 None:intergenic 10.0%
!!! AAGTCTAAAATAATAACATA+GGG - chr3_2:91449769-91449788 None:intergenic 15.0%
!!! AAAGTCTAAAATAATAACAT+AGG - chr3_2:91449770-91449789 None:intergenic 15.0%
!!! ATGTTTTATTTCAATTTCTT+AGG - chr3_2:91449864-91449883 None:intergenic 15.0%
!!! CTTTTAAATTAAGTTACTTA+TGG + chr3_2:91450205-91450224 Msa0437260:intron 15.0%
!!! AATGTTAGTTTTTTAATTTG+TGG + chr3_2:91450287-91450306 Msa0437260:intron 15.0%
!!! TAAGATGTTTTAATAAACAT+GGG - chr3_2:91450820-91450839 None:intergenic 15.0%
!!! ATAAGATGTTTTAATAAACA+TGG - chr3_2:91450821-91450840 None:intergenic 15.0%
!!! AAGTCTAAAATAATAACATA+GGG - chr3_2:91449769-91449788 None:intergenic 15.0%
!!! AAAGTCTAAAATAATAACAT+AGG - chr3_2:91449770-91449789 None:intergenic 15.0%
!!! ATGTTTTATTTCAATTTCTT+AGG - chr3_2:91449864-91449883 None:intergenic 15.0%
!!! CTTTTAAATTAAGTTACTTA+TGG + chr3_2:91450205-91450224 Msa0437260:intron 15.0%
!!! AATGTTAGTTTTTTAATTTG+TGG + chr3_2:91450287-91450306 Msa0437260:intron 15.0%
!!! TAAGATGTTTTAATAAACAT+GGG - chr3_2:91450820-91450839 None:intergenic 15.0%
!!! ATAAGATGTTTTAATAAACA+TGG - chr3_2:91450821-91450840 None:intergenic 15.0%
!!! GTTACAATTCTGAAAAATTT+AGG + chr3_2:91449643-91449662 Msa0437260:intron 20.0%
!!! ATTTATGGTAATTTTGTTGT+TGG + chr3_2:91449686-91449705 Msa0437260:intron 20.0%
!!! TTTATGGTAATTTTGTTGTT+GGG + chr3_2:91449687-91449706 Msa0437260:intron 20.0%
!! AAAAACTCAATTAAGAATTG+GGG - chr3_2:91449714-91449733 None:intergenic 20.0%
!! GAAAAACTCAATTAAGAATT+GGG - chr3_2:91449715-91449734 None:intergenic 20.0%
!! TGAAAAACTCAATTAAGAAT+TGG - chr3_2:91449716-91449735 None:intergenic 20.0%
!!! ACTTGATAGATAAATTTTAG+CGG - chr3_2:91450174-91450193 None:intergenic 20.0%
!! AGTAACTTAATTTAAAAGCT+TGG - chr3_2:91450203-91450222 None:intergenic 20.0%
!! AATATGAAATCATATCATTG+CGG + chr3_2:91450231-91450250 Msa0437260:intron 20.0%
!! AATCTAAACCATTACATAAT+TGG - chr3_2:91450969-91450988 None:intergenic 20.0%
!!! ATTAGATGAATTGTGTTATT+GGG + chr3_2:91450986-91451005 Msa0437260:intron 20.0%
!!! GTTACAATTCTGAAAAATTT+AGG + chr3_2:91449643-91449662 Msa0437260:intron 20.0%
!!! ATTTATGGTAATTTTGTTGT+TGG + chr3_2:91449686-91449705 Msa0437260:intron 20.0%
!!! TTTATGGTAATTTTGTTGTT+GGG + chr3_2:91449687-91449706 Msa0437260:intron 20.0%
!! AAAAACTCAATTAAGAATTG+GGG - chr3_2:91449714-91449733 None:intergenic 20.0%
!! GAAAAACTCAATTAAGAATT+GGG - chr3_2:91449715-91449734 None:intergenic 20.0%
!! TGAAAAACTCAATTAAGAAT+TGG - chr3_2:91449716-91449735 None:intergenic 20.0%
!!! ACTTGATAGATAAATTTTAG+CGG - chr3_2:91450174-91450193 None:intergenic 20.0%
!! AGTAACTTAATTTAAAAGCT+TGG - chr3_2:91450203-91450222 None:intergenic 20.0%
!! AATATGAAATCATATCATTG+CGG + chr3_2:91450231-91450250 Msa0437260:intron 20.0%
!! AATCTAAACCATTACATAAT+TGG - chr3_2:91450969-91450988 None:intergenic 20.0%
!!! ATTAGATGAATTGTGTTATT+GGG + chr3_2:91450986-91451005 Msa0437260:intron 20.0%
! GATAAAGAAGAAGAAATGAA+TGG - chr3_2:91448780-91448799 None:intergenic 25.0%
! AAAAAAAAAGAGAGAGAGAA+AGG - chr3_2:91448965-91448984 None:intergenic 25.0%
! ACTGATGAATAAACAATGAA+TGG - chr3_2:91449027-91449046 None:intergenic 25.0%
! CACTGTTCTATTTATTATCT+TGG + chr3_2:91449193-91449212 Msa0437260:intron 25.0%
! GTTCTATTTATTATCTTGGT+TGG + chr3_2:91449197-91449216 Msa0437260:intron 25.0%
! ACATTGAGTAGTAGTATTAT+AGG + chr3_2:91449232-91449251 Msa0437260:intron 25.0%
! AGTAGTATTATAGGCTAAAT+TGG + chr3_2:91449241-91449260 Msa0437260:intron 25.0%
!!! GTTTATTTTAGACTTCAAGT+TGG + chr3_2:91449280-91449299 Msa0437260:intron 25.0%
! ATATTTACAAAGTTTCAAGC+TGG + chr3_2:91449309-91449328 Msa0437260:intron 25.0%
! TTAGTAACGTTACAATAAGT+TGG + chr3_2:91449341-91449360 Msa0437260:intron 25.0%
! ACTTATAATATGTGGCAAAA+AGG - chr3_2:91449368-91449387 None:intergenic 25.0%
!!! TGTTTTCTTCTGGAAATTTA+TGG + chr3_2:91449671-91449690 Msa0437260:intron 25.0%
! AAAACTCAATTAAGAATTGG+GGG - chr3_2:91449713-91449732 None:intergenic 25.0%
! GTTTAAAAAGAAGAAAGAGA+AGG + chr3_2:91449934-91449953 Msa0437260:intron 25.0%
!!! ATTTTAGCGGTTAACTTTTT+AGG - chr3_2:91450161-91450180 None:intergenic 25.0%
! TCAACTATATCCTTAAAAAG+AGG - chr3_2:91450331-91450350 None:intergenic 25.0%
! TGGAAATATGTAAGATTATG+AGG + chr3_2:91450478-91450497 Msa0437260:intron 25.0%
! ACTAAAAGCTACATAAAAGA+AGG - chr3_2:91450529-91450548 None:intergenic 25.0%
! GACATCACTTTGATTATATT+AGG - chr3_2:91450657-91450676 None:intergenic 25.0%
! GATTAGATGAATTGTGTTAT+TGG + chr3_2:91450985-91451004 Msa0437260:intron 25.0%
! GATAAAGAAGAAGAAATGAA+TGG - chr3_2:91448780-91448799 None:intergenic 25.0%
! AAAAAAAAAGAGAGAGAGAA+AGG - chr3_2:91448965-91448984 None:intergenic 25.0%
! ACTGATGAATAAACAATGAA+TGG - chr3_2:91449027-91449046 None:intergenic 25.0%
! CACTGTTCTATTTATTATCT+TGG + chr3_2:91449193-91449212 Msa0437260:intron 25.0%
! GTTCTATTTATTATCTTGGT+TGG + chr3_2:91449197-91449216 Msa0437260:intron 25.0%
! ACATTGAGTAGTAGTATTAT+AGG + chr3_2:91449232-91449251 Msa0437260:intron 25.0%
! AGTAGTATTATAGGCTAAAT+TGG + chr3_2:91449241-91449260 Msa0437260:intron 25.0%
!!! GTTTATTTTAGACTTCAAGT+TGG + chr3_2:91449280-91449299 Msa0437260:intron 25.0%
! ATATTTACAAAGTTTCAAGC+TGG + chr3_2:91449309-91449328 Msa0437260:intron 25.0%
! TTAGTAACGTTACAATAAGT+TGG + chr3_2:91449341-91449360 Msa0437260:intron 25.0%
! ACTTATAATATGTGGCAAAA+AGG - chr3_2:91449368-91449387 None:intergenic 25.0%
!!! TGTTTTCTTCTGGAAATTTA+TGG + chr3_2:91449671-91449690 Msa0437260:intron 25.0%
! AAAACTCAATTAAGAATTGG+GGG - chr3_2:91449713-91449732 None:intergenic 25.0%
! GTTTAAAAAGAAGAAAGAGA+AGG + chr3_2:91449934-91449953 Msa0437260:intron 25.0%
!!! ATTTTAGCGGTTAACTTTTT+AGG - chr3_2:91450161-91450180 None:intergenic 25.0%
! TCAACTATATCCTTAAAAAG+AGG - chr3_2:91450331-91450350 None:intergenic 25.0%
! TGGAAATATGTAAGATTATG+AGG + chr3_2:91450478-91450497 Msa0437260:intron 25.0%
! ACTAAAAGCTACATAAAAGA+AGG - chr3_2:91450529-91450548 None:intergenic 25.0%
! GACATCACTTTGATTATATT+AGG - chr3_2:91450657-91450676 None:intergenic 25.0%
! GATTAGATGAATTGTGTTAT+TGG + chr3_2:91450985-91451004 Msa0437260:intron 25.0%
TTGTTTGTGATCAATCTAGA+AGG + chr3_2:91448860-91448879 Msa0437260:CDS 30.0%
GTCTTCATATAAAGCAAGAT+GGG - chr3_2:91448915-91448934 None:intergenic 30.0%
TGTCTTCATATAAAGCAAGA+TGG - chr3_2:91448916-91448935 None:intergenic 30.0%
CCATGTGAACTTATAATATG+TGG - chr3_2:91449376-91449395 None:intergenic 30.0%
CCACATATTATAAGTTCACA+TGG + chr3_2:91449373-91449392 Msa0437260:intron 30.0%
ACATTAGACATACATCATTG+TGG - chr3_2:91449464-91449483 None:intergenic 30.0%
!! AATTTGTTGAGAATCAATGC+TGG - chr3_2:91449555-91449574 None:intergenic 30.0%
AAATTCTCCCTCAATACTAT+TGG + chr3_2:91449570-91449589 Msa0437260:intron 30.0%
! CCATTATCCAATAGTATTGA+GGG - chr3_2:91449580-91449599 None:intergenic 30.0%
TCCATTATCCAATAGTATTG+AGG - chr3_2:91449581-91449600 None:intergenic 30.0%
!! CTATTGGATAATGGATGATA+TGG + chr3_2:91449586-91449605 Msa0437260:intron 30.0%
! ACACTAGCATTATTTTCCTT+TGG - chr3_2:91449625-91449644 None:intergenic 30.0%
!!! TTAGGCTTTTTGTTTTCTTC+TGG + chr3_2:91449661-91449680 Msa0437260:intron 30.0%
AGACATTACCATTATTGTGA+CGG - chr3_2:91449905-91449924 None:intergenic 30.0%
ATAATAAGATGATGCACAAG+CGG - chr3_2:91450016-91450035 None:intergenic 30.0%
!! ACACTAAAGGAGTATTAAGA+AGG + chr3_2:91450094-91450113 Msa0437260:intron 30.0%
!! GTAGCTTTTAGTTACAGAAA+TGG + chr3_2:91450537-91450556 Msa0437260:intron 30.0%
CATAAAGAGTCTCTTTAGAT+TGG + chr3_2:91450685-91450704 Msa0437260:intron 30.0%
! GTTTATTTGAGATTATCCAC+TGG + chr3_2:91450707-91450726 Msa0437260:intron 30.0%
AGACTATTTGAGAGAACTTA+TGG + chr3_2:91450744-91450763 Msa0437260:intron 30.0%
TACATAATTGGACTCTGTTT+GGG - chr3_2:91450957-91450976 None:intergenic 30.0%
TTACATAATTGGACTCTGTT+TGG - chr3_2:91450958-91450977 None:intergenic 30.0%
AACAGAGTCCAATTATGTAA+TGG + chr3_2:91450958-91450977 Msa0437260:intron 30.0%
TTGTTTGTGATCAATCTAGA+AGG + chr3_2:91448860-91448879 Msa0437260:CDS 30.0%
GTCTTCATATAAAGCAAGAT+GGG - chr3_2:91448915-91448934 None:intergenic 30.0%
TGTCTTCATATAAAGCAAGA+TGG - chr3_2:91448916-91448935 None:intergenic 30.0%
CCATGTGAACTTATAATATG+TGG - chr3_2:91449376-91449395 None:intergenic 30.0%
CCACATATTATAAGTTCACA+TGG + chr3_2:91449373-91449392 Msa0437260:intron 30.0%
ACATTAGACATACATCATTG+TGG - chr3_2:91449464-91449483 None:intergenic 30.0%
!! AATTTGTTGAGAATCAATGC+TGG - chr3_2:91449555-91449574 None:intergenic 30.0%
AAATTCTCCCTCAATACTAT+TGG + chr3_2:91449570-91449589 Msa0437260:intron 30.0%
! CCATTATCCAATAGTATTGA+GGG - chr3_2:91449580-91449599 None:intergenic 30.0%
TCCATTATCCAATAGTATTG+AGG - chr3_2:91449581-91449600 None:intergenic 30.0%
!! CTATTGGATAATGGATGATA+TGG + chr3_2:91449586-91449605 Msa0437260:intron 30.0%
! ACACTAGCATTATTTTCCTT+TGG - chr3_2:91449625-91449644 None:intergenic 30.0%
!!! TTAGGCTTTTTGTTTTCTTC+TGG + chr3_2:91449661-91449680 Msa0437260:intron 30.0%
AGACATTACCATTATTGTGA+CGG - chr3_2:91449905-91449924 None:intergenic 30.0%
ATAATAAGATGATGCACAAG+CGG - chr3_2:91450016-91450035 None:intergenic 30.0%
!! ACACTAAAGGAGTATTAAGA+AGG + chr3_2:91450094-91450113 Msa0437260:intron 30.0%
!! GTAGCTTTTAGTTACAGAAA+TGG + chr3_2:91450537-91450556 Msa0437260:intron 30.0%
CATAAAGAGTCTCTTTAGAT+TGG + chr3_2:91450685-91450704 Msa0437260:intron 30.0%
! GTTTATTTGAGATTATCCAC+TGG + chr3_2:91450707-91450726 Msa0437260:intron 30.0%
AGACTATTTGAGAGAACTTA+TGG + chr3_2:91450744-91450763 Msa0437260:intron 30.0%
TACATAATTGGACTCTGTTT+GGG - chr3_2:91450957-91450976 None:intergenic 30.0%
TTACATAATTGGACTCTGTT+TGG - chr3_2:91450958-91450977 None:intergenic 30.0%
AACAGAGTCCAATTATGTAA+TGG + chr3_2:91450958-91450977 Msa0437260:intron 30.0%
ATATGAAGACATCGTTTCCA+AGG + chr3_2:91448925-91448944 Msa0437260:CDS 35.0%
AGAGAGAAAGGTGATGAAAA+AGG - chr3_2:91448953-91448972 None:intergenic 35.0%
TACCAATTCCTTTGTGTTCA+TGG + chr3_2:91449066-91449085 Msa0437260:intron 35.0%
AACCATGAACACAAAGGAAT+TGG - chr3_2:91449071-91449090 None:intergenic 35.0%
TTAAGCAACCATGAACACAA+AGG - chr3_2:91449077-91449096 None:intergenic 35.0%
CCCTCAATACTATTGGATAA+TGG + chr3_2:91449577-91449596 Msa0437260:intron 35.0%
!! TTGGATAATGGATGATATGG+AGG + chr3_2:91449589-91449608 Msa0437260:intron 35.0%
TGGAGGATATTATCTTCCAA+AGG + chr3_2:91449606-91449625 Msa0437260:intron 35.0%
!! TATTTTAGACTTTCCACTCC+AGG + chr3_2:91449777-91449796 Msa0437260:intron 35.0%
TATTGAGACCGTCACAATAA+TGG + chr3_2:91449894-91449913 Msa0437260:intron 35.0%
! AATGGTAATGTCTTCACATG+TGG + chr3_2:91449912-91449931 Msa0437260:intron 35.0%
TAATAAGATGATGCACAAGC+GGG - chr3_2:91450015-91450034 None:intergenic 35.0%
!! CTAAAGGAGTATTAAGAAGG+AGG + chr3_2:91450097-91450116 Msa0437260:intron 35.0%
AGTATTAAGAAGGAGGTTCA+GGG + chr3_2:91450104-91450123 Msa0437260:intron 35.0%
!! GTTAACTTTTTAGGAGGAGA+GGG - chr3_2:91450152-91450171 None:intergenic 35.0%
!! TTAGCGGTTAACTTTTTAGG+AGG - chr3_2:91450158-91450177 None:intergenic 35.0%
! AACATTTTCGGTCAACACTT+TGG - chr3_2:91450273-91450292 None:intergenic 35.0%
AGAGGCAACTGCAAAAATAT+AGG - chr3_2:91450313-91450332 None:intergenic 35.0%
! TTTGCAGTTGCCTCTTTTTA+AGG + chr3_2:91450318-91450337 Msa0437260:intron 35.0%
!!! TACAGAAATGGTGCTTTTTC+AGG + chr3_2:91450549-91450568 Msa0437260:intron 35.0%
!! TGTACTTTGGTCTTTTTCGT+GGG - chr3_2:91450581-91450600 None:intergenic 35.0%
!! TTGTACTTTGGTCTTTTTCG+TGG - chr3_2:91450582-91450601 None:intergenic 35.0%
ACGAAAAAGACCAAAGTACA+AGG + chr3_2:91450581-91450600 Msa0437260:CDS 35.0%
AAAAGACCAAAGTACAAGGA+AGG + chr3_2:91450585-91450604 Msa0437260:CDS 35.0%
AGCAATTATCGGATCAACAA+TGG + chr3_2:91451037-91451056 Msa0437260:CDS 35.0%
ATATGAAGACATCGTTTCCA+AGG + chr3_2:91448925-91448944 Msa0437260:CDS 35.0%
AGAGAGAAAGGTGATGAAAA+AGG - chr3_2:91448953-91448972 None:intergenic 35.0%
TACCAATTCCTTTGTGTTCA+TGG + chr3_2:91449066-91449085 Msa0437260:intron 35.0%
AACCATGAACACAAAGGAAT+TGG - chr3_2:91449071-91449090 None:intergenic 35.0%
TTAAGCAACCATGAACACAA+AGG - chr3_2:91449077-91449096 None:intergenic 35.0%
CCCTCAATACTATTGGATAA+TGG + chr3_2:91449577-91449596 Msa0437260:intron 35.0%
!! TTGGATAATGGATGATATGG+AGG + chr3_2:91449589-91449608 Msa0437260:intron 35.0%
TGGAGGATATTATCTTCCAA+AGG + chr3_2:91449606-91449625 Msa0437260:intron 35.0%
!! TATTTTAGACTTTCCACTCC+AGG + chr3_2:91449777-91449796 Msa0437260:intron 35.0%
TATTGAGACCGTCACAATAA+TGG + chr3_2:91449894-91449913 Msa0437260:intron 35.0%
! AATGGTAATGTCTTCACATG+TGG + chr3_2:91449912-91449931 Msa0437260:intron 35.0%
TAATAAGATGATGCACAAGC+GGG - chr3_2:91450015-91450034 None:intergenic 35.0%
!! CTAAAGGAGTATTAAGAAGG+AGG + chr3_2:91450097-91450116 Msa0437260:intron 35.0%
AGTATTAAGAAGGAGGTTCA+GGG + chr3_2:91450104-91450123 Msa0437260:intron 35.0%
!! GTTAACTTTTTAGGAGGAGA+GGG - chr3_2:91450152-91450171 None:intergenic 35.0%
!! TTAGCGGTTAACTTTTTAGG+AGG - chr3_2:91450158-91450177 None:intergenic 35.0%
! AACATTTTCGGTCAACACTT+TGG - chr3_2:91450273-91450292 None:intergenic 35.0%
AGAGGCAACTGCAAAAATAT+AGG - chr3_2:91450313-91450332 None:intergenic 35.0%
! TTTGCAGTTGCCTCTTTTTA+AGG + chr3_2:91450318-91450337 Msa0437260:intron 35.0%
!!! TACAGAAATGGTGCTTTTTC+AGG + chr3_2:91450549-91450568 Msa0437260:intron 35.0%
!! TGTACTTTGGTCTTTTTCGT+GGG - chr3_2:91450581-91450600 None:intergenic 35.0%
!! TTGTACTTTGGTCTTTTTCG+TGG - chr3_2:91450582-91450601 None:intergenic 35.0%
ACGAAAAAGACCAAAGTACA+AGG + chr3_2:91450581-91450600 Msa0437260:CDS 35.0%
AAAAGACCAAAGTACAAGGA+AGG + chr3_2:91450585-91450604 Msa0437260:CDS 35.0%
AGCAATTATCGGATCAACAA+TGG + chr3_2:91451037-91451056 Msa0437260:CDS 35.0%
TGCAGTTGTTGTAAGAAACG+TGG - chr3_2:91448712-91448731 None:intergenic 40.0%
TCATCTTCTTCGCAGATTCA+TGG + chr3_2:91448832-91448851 Msa0437260:intron 40.0%
CATCTTCTTCGCAGATTCAT+GGG + chr3_2:91448833-91448852 Msa0437260:intron 40.0%
ATCTTCTTCGCAGATTCATG+GGG + chr3_2:91448834-91448853 Msa0437260:intron 40.0%
AGGTGATGAAAAAGGAACCT+TGG - chr3_2:91448945-91448964 None:intergenic 40.0%
GCTGGTTACGATTTACAACT+TGG - chr3_2:91449537-91449556 None:intergenic 40.0%
! GTATCGTACTGGTATGAGTT+TGG + chr3_2:91450071-91450090 Msa0437260:intron 40.0%
GGTATGAGTTTGGACACTAA+AGG + chr3_2:91450081-91450100 Msa0437260:intron 40.0%
GAGTATTAAGAAGGAGGTTC+AGG + chr3_2:91450103-91450122 Msa0437260:intron 40.0%
!! GGTTAACTTTTTAGGAGGAG+AGG - chr3_2:91450153-91450172 None:intergenic 40.0%
! TGTAGCTGACATTTTCTGTG+TGG + chr3_2:91450435-91450454 Msa0437260:CDS 40.0%
! GTAGCTGACATTTTCTGTGT+GGG + chr3_2:91450436-91450455 Msa0437260:CDS 40.0%
GACTTTCCTTCCTTGTACTT+TGG - chr3_2:91450594-91450613 None:intergenic 40.0%
AAGGAAAGTCTGTGCTTGAA+AGG + chr3_2:91450604-91450623 Msa0437260:CDS 40.0%
! GATGAATTGTGTTATTGGGC+AGG + chr3_2:91450990-91451009 Msa0437260:intron 40.0%
GTCCTGATGGTAGCAATTAT+CGG + chr3_2:91451026-91451045 Msa0437260:CDS 40.0%
ATCCGATAATTGCTACCATC+AGG - chr3_2:91451031-91451050 None:intergenic 40.0%
ATCAACAATGGAGCACATGT+TGG + chr3_2:91451049-91451068 Msa0437260:CDS 40.0%
TGCAGTTGTTGTAAGAAACG+TGG - chr3_2:91448712-91448731 None:intergenic 40.0%
TCATCTTCTTCGCAGATTCA+TGG + chr3_2:91448832-91448851 Msa0437260:intron 40.0%
CATCTTCTTCGCAGATTCAT+GGG + chr3_2:91448833-91448852 Msa0437260:intron 40.0%
ATCTTCTTCGCAGATTCATG+GGG + chr3_2:91448834-91448853 Msa0437260:intron 40.0%
AGGTGATGAAAAAGGAACCT+TGG - chr3_2:91448945-91448964 None:intergenic 40.0%
GCTGGTTACGATTTACAACT+TGG - chr3_2:91449537-91449556 None:intergenic 40.0%
! GTATCGTACTGGTATGAGTT+TGG + chr3_2:91450071-91450090 Msa0437260:intron 40.0%
GGTATGAGTTTGGACACTAA+AGG + chr3_2:91450081-91450100 Msa0437260:intron 40.0%
GAGTATTAAGAAGGAGGTTC+AGG + chr3_2:91450103-91450122 Msa0437260:intron 40.0%
!! GGTTAACTTTTTAGGAGGAG+AGG - chr3_2:91450153-91450172 None:intergenic 40.0%
! TGTAGCTGACATTTTCTGTG+TGG + chr3_2:91450435-91450454 Msa0437260:CDS 40.0%
! GTAGCTGACATTTTCTGTGT+GGG + chr3_2:91450436-91450455 Msa0437260:CDS 40.0%
GACTTTCCTTCCTTGTACTT+TGG - chr3_2:91450594-91450613 None:intergenic 40.0%
AAGGAAAGTCTGTGCTTGAA+AGG + chr3_2:91450604-91450623 Msa0437260:CDS 40.0%
! GATGAATTGTGTTATTGGGC+AGG + chr3_2:91450990-91451009 Msa0437260:intron 40.0%
GTCCTGATGGTAGCAATTAT+CGG + chr3_2:91451026-91451045 Msa0437260:CDS 40.0%
ATCCGATAATTGCTACCATC+AGG - chr3_2:91451031-91451050 None:intergenic 40.0%
ATCAACAATGGAGCACATGT+TGG + chr3_2:91451049-91451068 Msa0437260:CDS 40.0%
TATGTCGATCAAGTCCCTGA+AGG + chr3_2:91450047-91450066 Msa0437260:intron 45.0%
ACCAGTACGATACACCTTCA+GGG - chr3_2:91450064-91450083 None:intergenic 45.0%
TACCAGTACGATACACCTTC+AGG - chr3_2:91450065-91450084 None:intergenic 45.0%
GACAGCGTGAATGTTTCTCT+TGG + chr3_2:91450373-91450392 Msa0437260:intron 45.0%
TGTTTCTCTTGGCGAAACAG+AGG + chr3_2:91450384-91450403 Msa0437260:CDS 45.0%
GTATGCAACCCAGTCATCAT+CGG - chr3_2:91450415-91450434 None:intergenic 45.0%
!! GACATTTTCTGTGTGGGTTG+TGG + chr3_2:91450442-91450461 Msa0437260:CDS 45.0%
CTTACAAGTGCTTATGCCAG+TGG - chr3_2:91450726-91450745 None:intergenic 45.0%
! TGTGTTATTGGGCAGGTACA+AGG + chr3_2:91450997-91451016 Msa0437260:intron 45.0%
! TACAAGGTATCAGGTCCTGA+TGG + chr3_2:91451013-91451032 Msa0437260:intron 45.0%
AACAATGGAGCACATGTTGG+CGG + chr3_2:91451052-91451071 Msa0437260:CDS 45.0%
TATGTCGATCAAGTCCCTGA+AGG + chr3_2:91450047-91450066 Msa0437260:intron 45.0%
ACCAGTACGATACACCTTCA+GGG - chr3_2:91450064-91450083 None:intergenic 45.0%
TACCAGTACGATACACCTTC+AGG - chr3_2:91450065-91450084 None:intergenic 45.0%
GACAGCGTGAATGTTTCTCT+TGG + chr3_2:91450373-91450392 Msa0437260:intron 45.0%
TGTTTCTCTTGGCGAAACAG+AGG + chr3_2:91450384-91450403 Msa0437260:CDS 45.0%
GTATGCAACCCAGTCATCAT+CGG - chr3_2:91450415-91450434 None:intergenic 45.0%
!! GACATTTTCTGTGTGGGTTG+TGG + chr3_2:91450442-91450461 Msa0437260:CDS 45.0%
CTTACAAGTGCTTATGCCAG+TGG - chr3_2:91450726-91450745 None:intergenic 45.0%
! TGTGTTATTGGGCAGGTACA+AGG + chr3_2:91450997-91451016 Msa0437260:intron 45.0%
! TACAAGGTATCAGGTCCTGA+TGG + chr3_2:91451013-91451032 Msa0437260:intron 45.0%
AACAATGGAGCACATGTTGG+CGG + chr3_2:91451052-91451071 Msa0437260:CDS 45.0%
CAACAGACACACACACACAG+CGG + chr3_2:91448738-91448757 Msa0437260:CDS 50.0%
TAGACTTTCCACTCCAGGCA+TGG + chr3_2:91449782-91449801 Msa0437260:intron 50.0%
AGACTTTCCACTCCAGGCAT+GGG + chr3_2:91449783-91449802 Msa0437260:intron 50.0%
GAGATAAGCTTTCCCATGCC+TGG - chr3_2:91449798-91449817 None:intergenic 50.0%
! TCCCTGAAGGTGTATCGTAC+TGG + chr3_2:91450060-91450079 Msa0437260:intron 50.0%
AGGAGAGACCGATGATGACT+GGG + chr3_2:91450404-91450423 Msa0437260:CDS 50.0%
! TGTGGGTTGTGGATCGATTG+TGG + chr3_2:91450453-91450472 Msa0437260:CDS 50.0%
! GTGGGTTGTGGATCGATTGT+GGG + chr3_2:91450454-91450473 Msa0437260:CDS 50.0%
GTTGTGGATCGATTGTGGGT+TGG + chr3_2:91450458-91450477 Msa0437260:CDS 50.0%
! TTGGGCAGGTACAAGGTATC+AGG + chr3_2:91451004-91451023 Msa0437260:intron 50.0%
CAACAGACACACACACACAG+CGG + chr3_2:91448738-91448757 Msa0437260:CDS 50.0%
TAGACTTTCCACTCCAGGCA+TGG + chr3_2:91449782-91449801 Msa0437260:intron 50.0%
AGACTTTCCACTCCAGGCAT+GGG + chr3_2:91449783-91449802 Msa0437260:intron 50.0%
GAGATAAGCTTTCCCATGCC+TGG - chr3_2:91449798-91449817 None:intergenic 50.0%
! TCCCTGAAGGTGTATCGTAC+TGG + chr3_2:91450060-91450079 Msa0437260:intron 50.0%
AGGAGAGACCGATGATGACT+GGG + chr3_2:91450404-91450423 Msa0437260:CDS 50.0%
! TGTGGGTTGTGGATCGATTG+TGG + chr3_2:91450453-91450472 Msa0437260:CDS 50.0%
! GTGGGTTGTGGATCGATTGT+GGG + chr3_2:91450454-91450473 Msa0437260:CDS 50.0%
GTTGTGGATCGATTGTGGGT+TGG + chr3_2:91450458-91450477 Msa0437260:CDS 50.0%
! TTGGGCAGGTACAAGGTATC+AGG + chr3_2:91451004-91451023 Msa0437260:intron 50.0%
CGCTGTGTGTGTGTGTCTGT+TGG - chr3_2:91448740-91448759 None:intergenic 55.0%
ATGGGTGCGACAGTATCTGC+AGG - chr3_2:91448897-91448916 None:intergenic 55.0%
AAGCTTTCCCATGCCTGGAG+TGG - chr3_2:91449793-91449812 None:intergenic 55.0%
ATGATGCACAAGCGGGCATG+TGG - chr3_2:91450008-91450027 None:intergenic 55.0%
GAGGAGAGACCGATGATGAC+TGG + chr3_2:91450403-91450422 Msa0437260:CDS 55.0%
CGCTGTGTGTGTGTGTCTGT+TGG - chr3_2:91448740-91448759 None:intergenic 55.0%
ATGGGTGCGACAGTATCTGC+AGG - chr3_2:91448897-91448916 None:intergenic 55.0%
AAGCTTTCCCATGCCTGGAG+TGG - chr3_2:91449793-91449812 None:intergenic 55.0%
ATGATGCACAAGCGGGCATG+TGG - chr3_2:91450008-91450027 None:intergenic 55.0%
GAGGAGAGACCGATGATGAC+TGG + chr3_2:91450403-91450422 Msa0437260:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 91448691 91451096 91448691 ID=Msa0437260;Name=Msa0437260
chr3_2 mRNA 91448691 91451096 91448691 ID=Msa0437260-mRNA-1;Parent=Msa0437260;Name=Msa0437260-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.66|0.42|1|0|0.14|7|0|142
chr3_2 exon 91448691 91448759 91448691 ID=Msa0437260-mRNA-1:exon:27306;Parent=Msa0437260-mRNA-1
chr3_2 exon 91448847 91448881 91448847 ID=Msa0437260-mRNA-1:exon:27307;Parent=Msa0437260-mRNA-1
chr3_2 exon 91448901 91448946 91448901 ID=Msa0437260-mRNA-1:exon:27308;Parent=Msa0437260-mRNA-1
chr3_2 exon 91449785 91449828 91449785 ID=Msa0437260-mRNA-1:exon:27309;Parent=Msa0437260-mRNA-1
chr3_2 exon 91450378 91450486 91450378 ID=Msa0437260-mRNA-1:exon:27310;Parent=Msa0437260-mRNA-1
chr3_2 exon 91450571 91450625 91450571 ID=Msa0437260-mRNA-1:exon:27311;Parent=Msa0437260-mRNA-1
chr3_2 exon 91451026 91451096 91451026 ID=Msa0437260-mRNA-1:exon:27312;Parent=Msa0437260-mRNA-1
chr3_2 CDS 91448691 91448759 91448691 ID=Msa0437260-mRNA-1:cds;Parent=Msa0437260-mRNA-1
chr3_2 CDS 91448847 91448881 91448847 ID=Msa0437260-mRNA-1:cds;Parent=Msa0437260-mRNA-1
chr3_2 CDS 91448901 91448946 91448901 ID=Msa0437260-mRNA-1:cds;Parent=Msa0437260-mRNA-1
chr3_2 CDS 91449785 91449828 91449785 ID=Msa0437260-mRNA-1:cds;Parent=Msa0437260-mRNA-1
chr3_2 CDS 91450378 91450486 91450378 ID=Msa0437260-mRNA-1:cds;Parent=Msa0437260-mRNA-1
chr3_2 CDS 91450571 91450625 91450571 ID=Msa0437260-mRNA-1:cds;Parent=Msa0437260-mRNA-1
chr3_2 CDS 91451026 91451096 91451026 ID=Msa0437260-mRNA-1:cds;Parent=Msa0437260-mRNA-1
Gene Sequence

>Msa0437260

ATGATCTCACTTGTGAGTCCACGTTTCTTACAACAACTGCATCGTACCAACAGACACACACACACAGCGATTCATGGGGAGATTGTTTGTGATCAATCTAGAAGATACTGTCGCACCCATCTTGCTTTATATGAAGACATCGTTTCCAAGACTTTCCACTCCAGGCATGGGAAAGCTTATCTCTTCAATAAAGTCGTGAATGTTTCTCTTGGCGAAACAGAGGAGAGACCGATGATGACTGGGTTGCATACTGTAGCTGACATTTTCTGTGTGGGTTGTGGATCGATTGTGGGTTGGAAATATGAGATTGCCCACGAAAAAGACCAAAGTACAAGGAAGGAAAGTCTGTGCTTGAAAGGTCCTGATGGTAGCAATTATCGGATCAACAATGGAGCACATGTTGGCGGAAGCGATGCAGATGATTTATAG

Protein sequence

>Msa0437260

MISLVSPRFLQQLHRTNRHTHTAIHGEIVCDQSRRYCRTHLALYEDIVSKTFHSRHGKAYLFNKVVNVSLGETEERPMMTGLHTVADIFCVGCGSIVGWKYEIAHEKDQSTRKESLCLKGPDGSNYRINNGAHVGGSDADDL*