AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0379900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379900 MtrunA17_Chr3g0133011 93.421 76 5 0 1 76 421 496 2.35e-46 153
Msa0379900 MtrunA17_Chr2g0285351 82.895 76 13 0 1 76 394 469 3.85e-41 139
Msa0379900 MtrunA17_Chr2g0285371 81.579 76 14 0 1 76 394 469 7.92e-41 138
Msa0379900 MtrunA17_Chr2g0285381 78.947 76 16 0 1 76 390 465 1.41e-39 135
Msa0379900 MtrunA17_Chr4g0009641 78.667 75 16 0 2 76 372 446 2.27e-39 134
Msa0379900 MtrunA17_Chr4g0009701 76.000 75 18 0 2 76 396 470 4.18e-38 131
Msa0379900 MtrunA17_Chr4g0009651 76.000 75 18 0 2 76 396 470 1.13e-37 130
Msa0379900 MtrunA17_Chr4g0009681 76.316 76 18 0 1 76 392 467 2.75e-37 129
Msa0379900 MtrunA17_Chr4g0009661 73.333 75 20 0 2 76 396 470 4.69e-37 128
Msa0379900 MtrunA17_Chr4g0009711 75.000 76 19 0 1 76 395 470 1.05e-36 127
Msa0379900 MtrunA17_Chr4g0009721 72.368 76 21 0 1 76 344 419 2.44e-36 125
Msa0379900 MtrunA17_Chr4g0009671 74.324 74 19 0 3 76 362 435 2.82e-35 123
Msa0379900 MtrunA17_Chr7g0249431 59.155 71 29 0 1 71 423 493 4.01e-26 99.0
Msa0379900 MtrunA17_Chr8g0338461 52.632 76 36 0 1 76 420 495 2.45e-25 97.1
Msa0379900 MtrunA17_Chr7g0234051 50.000 76 38 0 1 76 420 495 1.94e-23 91.7
Msa0379900 MtrunA17_Chr6g0457241 55.357 56 25 0 1 56 1 56 1.95e-19 73.9
Msa0379900 MtrunA17_Chr2g0285401 70.000 40 12 0 1 40 51 90 3.38e-17 68.9
Msa0379900 MtrunA17_Chr3g0093971 42.105 76 40 1 1 72 375 450 3.19e-16 71.2
Msa0379900 MtrunA17_Chr1g0204191 35.897 78 46 1 3 76 412 489 3.76e-13 62.4
Msa0379900 MtrunA17_Chr3g0126051 38.356 73 41 1 3 71 385 457 1.44e-12 60.8
Msa0379900 MtrunA17_Chr4g0020241 35.135 74 48 0 3 76 413 486 9.35e-12 58.5
Msa0379900 MtrunA17_Chr7g0234041 52.500 40 19 0 1 40 410 449 7.76e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379900 AT2G22960.1 69.737 76 22 1 1 76 110 184 3.20e-34 115
Msa0379900 AT3G10450.2 69.737 76 22 1 1 76 320 394 3.19e-33 117
Msa0379900 AT3G10450.1 69.737 76 22 1 1 76 363 437 4.11e-33 118
Msa0379900 AT2G23010.1 72.368 76 20 1 1 76 363 437 6.28e-33 117
Msa0379900 AT1G33540.2 69.737 76 22 1 1 76 347 421 7.63e-33 117
Msa0379900 AT1G33540.1 69.737 76 22 1 1 76 390 464 1.13e-32 117
Msa0379900 AT2G22980.1 72.368 76 20 1 1 76 356 430 1.70e-32 116
Msa0379900 AT2G23000.1 73.684 76 19 1 1 76 363 437 1.71e-32 116
Msa0379900 AT2G23000.2 73.684 76 19 1 1 76 363 437 1.71e-32 116
Msa0379900 AT3G12203.2 72.368 76 20 1 1 76 305 379 2.20e-32 115
Msa0379900 AT3G12203.3 72.368 76 20 1 1 76 342 416 2.89e-32 115
Msa0379900 AT3G12203.1 72.368 76 20 1 1 76 363 437 4.03e-32 115
Msa0379900 AT5G36180.5 70.270 74 21 1 3 76 267 339 7.54e-32 113
Msa0379900 AT5G36180.3 70.270 74 21 1 3 76 267 339 7.54e-32 113
Msa0379900 AT2G22990.6 68.421 76 23 1 1 76 245 319 1.31e-31 112
Msa0379900 AT1G73300.1 67.105 76 24 1 1 76 367 441 1.36e-31 114
Msa0379900 AT1G73300.2 67.105 76 24 1 1 76 367 441 1.36e-31 114
Msa0379900 AT1G73280.3 67.568 74 23 1 3 76 242 314 1.50e-31 111
Msa0379900 AT2G22920.3 68.421 76 23 1 1 76 182 256 1.52e-31 110
Msa0379900 AT5G36180.1 70.270 74 21 1 3 76 369 441 2.01e-31 113
Msa0379900 AT1G73280.4 67.568 74 23 1 3 76 267 339 2.24e-31 112
Msa0379900 AT2G23010.2 69.737 76 22 1 1 76 363 437 3.97e-31 112
Msa0379900 AT1G73280.1 67.568 74 23 1 3 76 369 441 4.63e-31 112
Msa0379900 AT2G22990.1 68.421 76 23 1 1 76 359 433 4.83e-31 112
Msa0379900 AT2G22920.2 68.421 76 23 1 1 76 361 435 1.69e-30 110
Msa0379900 AT5G09640.1 70.667 75 20 2 3 76 392 465 1.90e-30 111
Msa0379900 AT1G73290.1 65.789 76 25 1 1 76 364 438 1.95e-30 110
Msa0379900 AT2G22970.1 67.105 76 24 1 1 76 359 433 2.26e-30 110
Msa0379900 AT3G12240.1 68.421 76 23 1 1 76 362 436 8.14e-30 108
Msa0379900 AT2G22990.2 65.789 76 25 1 1 76 245 319 8.99e-30 107
Msa0379900 AT3G12230.1 68.421 76 23 1 1 76 361 435 9.80e-30 108
Msa0379900 AT1G73270.1 67.568 74 23 1 3 76 369 441 1.92e-29 108
Msa0379900 AT1G73270.2 67.568 74 23 1 3 76 369 441 2.10e-29 108
Msa0379900 AT2G22990.5 65.789 76 25 1 1 76 350 424 3.32e-29 107
Msa0379900 AT1G73310.1 64.474 76 26 1 1 76 367 441 6.39e-29 106
Msa0379900 AT3G12220.3 63.889 72 25 1 1 72 309 379 6.88e-26 97.8
Msa0379900 AT3G12220.2 63.889 72 25 1 1 72 331 401 8.59e-26 97.8
Msa0379900 AT3G12220.1 63.889 72 25 1 1 72 361 431 1.02e-25 97.8
Msa0379900 AT4G12910.1 54.930 71 32 0 1 71 422 492 7.46e-25 95.9
Msa0379900 AT3G25420.1 50.000 72 36 0 1 72 419 490 1.52e-23 92.4
Msa0379900 AT2G22980.5 76.000 50 12 0 1 50 239 288 1.79e-22 87.8
Msa0379900 AT2G22980.4 76.000 50 12 0 1 50 356 405 3.02e-22 88.6
Msa0379900 AT2G22980.2 76.000 50 12 0 1 50 356 405 3.81e-22 88.2
Msa0379900 AT2G22970.3 71.154 52 15 0 1 52 359 410 2.21e-21 86.3
Msa0379900 AT2G22970.4 72.000 50 14 0 1 50 359 408 5.42e-21 84.7
Msa0379900 AT5G36180.2 72.917 48 13 0 3 50 267 314 1.20e-20 83.2
Msa0379900 AT3G10450.3 69.388 49 15 0 1 49 320 368 3.11e-20 82.4
Msa0379900 AT3G10450.4 69.388 49 15 0 1 49 363 411 3.40e-20 82.8
Msa0379900 AT2G22990.3 70.000 50 15 0 1 50 359 408 1.63e-19 80.9
Msa0379900 AT2G22990.4 71.429 49 14 0 1 49 359 407 1.73e-19 80.9
Msa0379900 AT2G05850.1 39.189 74 45 0 3 76 410 483 2.73e-17 74.7
Msa0379900 AT3G52000.1 36.842 76 48 0 1 76 403 478 8.15e-17 73.2
Msa0379900 AT3G52010.1 35.526 76 49 0 1 76 408 483 5.18e-15 68.2
Msa0379900 AT3G52020.1 37.838 74 46 0 3 76 424 497 2.62e-14 66.2
Msa0379900 AT5G08260.1 37.838 74 46 0 3 76 402 475 7.65e-14 64.7
Msa0379900 AT1G73310.2 66.667 39 13 0 1 39 367 405 1.30e-13 64.3
Msa0379900 AT1G73310.3 66.667 39 13 0 1 39 265 303 1.46e-13 63.9
Msa0379900 AT3G63470.1 32.432 74 50 0 3 76 423 496 2.10e-13 63.5
Msa0379900 AT3G17180.1 36.486 74 47 0 3 76 401 474 5.18e-13 62.4
Msa0379900 AT1G61130.1 41.096 73 42 1 3 75 387 458 1.39e-12 61.2
Msa0379900 AT5G36180.4 49.254 67 30 2 3 66 267 332 3.32e-12 60.1
Msa0379900 AT1G11080.1 41.096 73 42 1 3 75 416 487 5.41e-12 59.7
Msa0379900 AT1G11080.2 41.096 73 42 1 3 75 416 487 5.41e-12 59.7
Msa0379900 AT4G15100.1 37.838 74 45 1 3 76 408 480 6.44e-12 59.3
Msa0379900 AT5G23210.2 37.838 74 45 1 3 76 326 398 8.48e-12 58.9
Msa0379900 AT5G23210.5 37.838 74 45 1 3 76 327 399 8.82e-12 58.9
Msa0379900 AT1G73290.3 65.714 35 12 0 1 35 364 398 1.03e-11 58.9
Msa0379900 AT5G23210.1 37.838 74 45 1 3 76 422 494 1.05e-11 58.9
Msa0379900 AT2G22920.1 65.714 35 12 0 1 35 361 395 2.09e-11 57.8

Find 51 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATTTCCCCTGTTCCTAT+TGG 0.230327 3_1:-81346456 Msa0379900:five_prime_UTR
TAAACAACTAGTAGAACTTT+TGG 0.311984 3_1:-81345228 Msa0379900:three_prime_UTR
TTCAGGGAACTACAGGAAAA+TGG 0.320072 3_1:-81346276 Msa0379900:intron
ATATTTCCCCTGTTCCTATT+GGG 0.342971 3_1:-81346455 Msa0379900:five_prime_UTR
TAATATAGGAGCAAGTTCTT+TGG 0.366469 3_1:-81345315 Msa0379900:three_prime_UTR
ATTAAATGTGTTTCGTTGTC+CGG 0.376071 3_1:+81345932 None:intergenic
TCATAATTAATAAATAATAT+AGG 0.382759 3_1:-81345329 Msa0379900:three_prime_UTR
ATTAGCGTCGTTGGCCCAAT+AGG 0.389162 3_1:+81346441 None:intergenic
GTTGTTTAATTGTCAAAGCC+TGG 0.389238 3_1:+81345243 None:intergenic
GTTATCGTTCATTAATATAC+AGG 0.393033 3_1:-81346174 Msa0379900:five_prime_UTR
CATCGGTGTTCAATATATAT+AGG 0.402550 3_1:+81345959 None:intergenic
GTCGTTGGCCCAATAGGAAC+AGG 0.410370 3_1:+81346447 None:intergenic
TTTGCAATTCAGGGAACTAC+AGG 0.448841 3_1:-81346283 Msa0379900:intron
ACTATTCCATTGTTGACGAT+TGG 0.450638 3_1:-81345751 Msa0379900:CDS
CATGTAAATCTTAGCAGAAA+AGG 0.457089 3_1:-81346196 Msa0379900:five_prime_UTR
CTAACTATTTCGTGCTTGAA+AGG 0.472405 3_1:+81346232 None:intergenic
GCATTCTTCACGTTTGTACT+CGG 0.481386 3_1:+81345444 None:intergenic
TATTCTAATTCTCAAGTAGC+AGG 0.482956 3_1:-81345719 Msa0379900:CDS
CACACATTATATTAACTCAC+TGG 0.485158 3_1:+81345289 None:intergenic
ACACAAGGACTTACTCGAAT+CGG 0.495879 3_1:-81345604 Msa0379900:CDS
CATTCTTCACGTTTGTACTC+GGG 0.496306 3_1:+81345445 None:intergenic
ATTCCATTGTTGACGATTGG+AGG 0.519599 3_1:-81345748 Msa0379900:CDS
TTTCGTTGTCCGGCATACAT+CGG 0.520997 3_1:+81345942 None:intergenic
TTCTCACTATATAACATCCC+AGG 0.527410 3_1:-81345261 Msa0379900:three_prime_UTR
ACTCAAACACAAGACAAAGA+AGG 0.530772 3_1:+81345146 None:intergenic
CAAATACAGTATTGAAAACA+AGG 0.540685 3_1:+81346100 None:intergenic
TCATCATGTTGAACTCAGCT+TGG 0.541098 3_1:+81345364 None:intergenic
TTGTTTAATTGTCAAAGCCT+GGG 0.542222 3_1:+81345244 None:intergenic
CTCAAACACAAGACAAAGAA+GGG 0.544273 3_1:+81345147 None:intergenic
GCATTAATTAATTCCTAGAG+TGG 0.553204 3_1:+81345388 None:intergenic
GATATCTAATTACCCACTCT+AGG 0.558407 3_1:-81345401 Msa0379900:exon
TATATATAATTACAGGGAGG+AGG 0.561418 3_1:-81345478 Msa0379900:intron
TATTGAACACCGATGTATGC+CGG 0.562932 3_1:-81345951 Msa0379900:five_prime_UTR
TTGTTGACGATTGGAGGCAG+TGG 0.579562 3_1:-81345742 Msa0379900:CDS
CGAAACACATTTAATATCAG+AGG 0.588074 3_1:-81345924 Msa0379900:five_prime_UTR
AAATGCACTGCACATTCGAA+AGG 0.594941 3_1:-81346413 Msa0379900:intron
ATTACAGGGAGGAGGACATA+CGG 0.596822 3_1:-81345470 Msa0379900:intron
AATGCTTAGCCATGTTCAGT+AGG 0.600787 3_1:-81345426 Msa0379900:CDS
GATGACATTTGCAACTGTGA+AGG 0.605807 3_1:-81345582 Msa0379900:intron
ATATATATAGGACACTTGTA+CGG 0.607050 3_1:+81345971 None:intergenic
GCTTAGCCATGTTCAGTAGG+TGG 0.616283 3_1:-81345423 Msa0379900:CDS
AGATATCCACCTACTGAACA+TGG 0.617483 3_1:+81345417 None:intergenic
CATTAATTAATTCCTAGAGT+GGG 0.623797 3_1:+81345389 None:intergenic
ATTCTAATTCTCAAGTAGCA+GGG 0.636518 3_1:-81345718 Msa0379900:intron
ATGATGTGTCGAGGTAGTGA+TGG 0.639769 3_1:+81346075 None:intergenic
CTGCCTCCAATCGTCAACAA+TGG 0.640625 3_1:+81345745 None:intergenic
ACACATTATATTAACTCACT+GGG 0.648883 3_1:+81345290 None:intergenic
TAAAGCTTAATGATGTGTCG+AGG 0.653330 3_1:+81346066 None:intergenic
TCGTTGGCCCAATAGGAACA+GGG 0.675674 3_1:+81346448 None:intergenic
CGTTGGCCCAATAGGAACAG+GGG 0.679559 3_1:+81346449 None:intergenic
ATATTATTGATAGATACACA+AGG 0.717109 3_1:-81345619 Msa0379900:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATACAAACAATAA+AGG - chr3_1:81345197-81345216 Msa0379900:three_prime_UTR 10.0%
!! ATATATAGATATACATAAAC+AGG + chr3_1:81346056-81346075 None:intergenic 15.0%
!! TGTTATGTATATATAATTAC+AGG - chr3_1:81346088-81346107 Msa0379900:five_prime_UTR 15.0%
!! GTTATGTATATATAATTACA+GGG - chr3_1:81346089-81346108 Msa0379900:five_prime_UTR 15.0%
!! AATTCACACAACTAATTATT+TGG + chr3_1:81345707-81345726 None:intergenic 20.0%
!! ATATTATTGATAGATACACA+AGG - chr3_1:81345954-81345973 Msa0379900:five_prime_UTR 20.0%
! CACTATATATTTGCAATTCA+GGG - chr3_1:81345281-81345300 Msa0379900:three_prime_UTR 25.0%
! GTTATCGTTCATTAATATAC+AGG - chr3_1:81345399-81345418 Msa0379900:exon 25.0%
!! CAAATACAGTATTGAAAACA+AGG + chr3_1:81345476-81345495 None:intergenic 25.0%
! ATATATATAGGACACTTGTA+CGG + chr3_1:81345605-81345624 None:intergenic 25.0%
!! AAGACAATTTTTGTTAACAG+TGG - chr3_1:81345743-81345762 Msa0379900:CDS 25.0%
! ATGTATATATAATTACAGGG+AGG - chr3_1:81346092-81346111 Msa0379900:five_prime_UTR 25.0%
! CATTAATTAATTCCTAGAGT+GGG + chr3_1:81346187-81346206 None:intergenic 25.0%
! ACACATTATATTAACTCACT+GGG + chr3_1:81346286-81346305 None:intergenic 25.0%
!! TAAACAACTAGTAGAACTTT+TGG - chr3_1:81346345-81346364 Msa0379900:intron 25.0%
CCTGAATTGCAAATATATAG+TGG + chr3_1:81345283-81345302 None:intergenic 30.0%
CCACTATATATTTGCAATTC+AGG - chr3_1:81345280-81345299 Msa0379900:three_prime_UTR 30.0%
CATGTAAATCTTAGCAGAAA+AGG - chr3_1:81345377-81345396 Msa0379900:three_prime_UTR 30.0%
! CATCGGTGTTCAATATATAT+AGG + chr3_1:81345617-81345636 None:intergenic 30.0%
ATTAAATGTGTTTCGTTGTC+CGG + chr3_1:81345644-81345663 None:intergenic 30.0%
CGAAACACATTTAATATCAG+AGG - chr3_1:81345649-81345668 Msa0379900:intron 30.0%
TATTCTAATTCTCAAGTAGC+AGG - chr3_1:81345854-81345873 Msa0379900:intron 30.0%
ATTCTAATTCTCAAGTAGCA+GGG - chr3_1:81345855-81345874 Msa0379900:intron 30.0%
TATATATAATTACAGGGAGG+AGG - chr3_1:81346095-81346114 Msa0379900:five_prime_UTR 30.0%
GCATTAATTAATTCCTAGAG+TGG + chr3_1:81346188-81346207 None:intergenic 30.0%
TAATATAGGAGCAAGTTCTT+TGG - chr3_1:81346258-81346277 Msa0379900:five_prime_UTR 30.0%
CACACATTATATTAACTCAC+TGG + chr3_1:81346287-81346306 None:intergenic 30.0%
TTGTTTAATTGTCAAAGCCT+GGG + chr3_1:81346332-81346351 None:intergenic 30.0%
ATATTTCCCCTGTTCCTATT+GGG - chr3_1:81345118-81345137 Msa0379900:three_prime_UTR 35.0%
! ATTTTGAACATTAGCGTCGT+TGG + chr3_1:81345144-81345163 None:intergenic 35.0%
ATAAAGGTAGATTTAGCAGC+AGG - chr3_1:81345213-81345232 Msa0379900:three_prime_UTR 35.0%
TAAAGGTAGATTTAGCAGCA+GGG - chr3_1:81345214-81345233 Msa0379900:three_prime_UTR 35.0%
ACTAACTCGCACAAAGATTA+GGG + chr3_1:81345248-81345267 None:intergenic 35.0%
AACTAACTCGCACAAAGATT+AGG + chr3_1:81345249-81345268 None:intergenic 35.0%
CTAACTATTTCGTGCTTGAA+AGG + chr3_1:81345344-81345363 None:intergenic 35.0%
TAAAGCTTAATGATGTGTCG+AGG + chr3_1:81345510-81345529 None:intergenic 35.0%
! TGACATGACTGTTCCATTTT+TGG - chr3_1:81345772-81345791 Msa0379900:CDS 35.0%
ACTATTCCATTGTTGACGAT+TGG - chr3_1:81345822-81345841 Msa0379900:five_prime_UTR 35.0%
GATATCTAATTACCCACTCT+AGG - chr3_1:81346172-81346191 Msa0379900:five_prime_UTR 35.0%
TTCTCACTATATAACATCCC+AGG - chr3_1:81346312-81346331 Msa0379900:intron 35.0%
GTTGTTTAATTGTCAAAGCC+TGG + chr3_1:81346333-81346352 None:intergenic 35.0%
! ACAACTAGTAGAACTTTTGG+TGG - chr3_1:81346348-81346367 Msa0379900:intron 35.0%
CTCAAACACAAGACAAAGAA+GGG + chr3_1:81346429-81346448 None:intergenic 35.0%
ACTCAAACACAAGACAAAGA+AGG + chr3_1:81346430-81346449 None:intergenic 35.0%
CATATTTCCCCTGTTCCTAT+TGG - chr3_1:81345117-81345136 Msa0379900:three_prime_UTR 40.0%
AAATGCACTGCACATTCGAA+AGG - chr3_1:81345160-81345179 Msa0379900:three_prime_UTR 40.0%
TTTGCAATTCAGGGAACTAC+AGG - chr3_1:81345290-81345309 Msa0379900:three_prime_UTR 40.0%
TTCAGGGAACTACAGGAAAA+TGG - chr3_1:81345297-81345316 Msa0379900:three_prime_UTR 40.0%
TATTGAACACCGATGTATGC+CGG - chr3_1:81345622-81345641 Msa0379900:intron 40.0%
ATTCCATTGTTGACGATTGG+AGG - chr3_1:81345825-81345844 Msa0379900:five_prime_UTR 40.0%
ACACAAGGACTTACTCGAAT+CGG - chr3_1:81345969-81345988 Msa0379900:five_prime_UTR 40.0%
GATGACATTTGCAACTGTGA+AGG - chr3_1:81345991-81346010 Msa0379900:five_prime_UTR 40.0%
CATTCTTCACGTTTGTACTC+GGG + chr3_1:81346131-81346150 None:intergenic 40.0%
GCATTCTTCACGTTTGTACT+CGG + chr3_1:81346132-81346151 None:intergenic 40.0%
AATGCTTAGCCATGTTCAGT+AGG - chr3_1:81346147-81346166 Msa0379900:five_prime_UTR 40.0%
AGATATCCACCTACTGAACA+TGG + chr3_1:81346159-81346178 None:intergenic 40.0%
TCATCATGTTGAACTCAGCT+TGG + chr3_1:81346212-81346231 None:intergenic 40.0%
ATGATGTGTCGAGGTAGTGA+TGG + chr3_1:81345501-81345520 None:intergenic 45.0%
TTTCGTTGTCCGGCATACAT+CGG + chr3_1:81345634-81345653 None:intergenic 45.0%
! CACGCTTGAGTTGCCAAAAA+TGG + chr3_1:81345788-81345807 None:intergenic 45.0%
!!! CATTTTTGGCAACTCAAGCG+TGG - chr3_1:81345786-81345805 Msa0379900:CDS 45.0%
ATTACAGGGAGGAGGACATA+CGG - chr3_1:81346103-81346122 Msa0379900:five_prime_UTR 45.0%
!! TCATAATTAATAAATAATAT+AGG - chr3_1:81346244-81346263 Msa0379900:five_prime_UTR 5.0%
TCGTTGGCCCAATAGGAACA+GGG + chr3_1:81345128-81345147 None:intergenic 50.0%
ATTAGCGTCGTTGGCCCAAT+AGG + chr3_1:81345135-81345154 None:intergenic 50.0%
CTGCCTCCAATCGTCAACAA+TGG + chr3_1:81345831-81345850 None:intergenic 50.0%
TTGTTGACGATTGGAGGCAG+TGG - chr3_1:81345831-81345850 Msa0379900:intron 50.0%
GCTTAGCCATGTTCAGTAGG+TGG - chr3_1:81346150-81346169 Msa0379900:five_prime_UTR 50.0%
CGTTGGCCCAATAGGAACAG+GGG + chr3_1:81345127-81345146 None:intergenic 55.0%
GTCGTTGGCCCAATAGGAAC+AGG + chr3_1:81345129-81345148 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 81345110 81346485 81345110 ID=Msa0379900;Name=Msa0379900
chr3_1 mRNA 81345110 81346485 81345110 ID=Msa0379900-mRNA-1;Parent=Msa0379900;Name=Msa0379900-mRNA-1;_AED=0.38;_eAED=0.38;_QI=475|1|1|1|0.75|0.6|5|292|76
chr3_1 exon 81345110 81345485 81345110 ID=Msa0379900-mRNA-1:exon:20650;Parent=Msa0379900-mRNA-1
chr3_1 exon 81345583 81345628 81345583 ID=Msa0379900-mRNA-1:exon:20649;Parent=Msa0379900-mRNA-1
chr3_1 exon 81345719 81345847 81345719 ID=Msa0379900-mRNA-1:exon:20648;Parent=Msa0379900-mRNA-1
chr3_1 exon 81345919 81346293 81345919 ID=Msa0379900-mRNA-1:exon:20647;Parent=Msa0379900-mRNA-1
chr3_1 exon 81346414 81346485 81346414 ID=Msa0379900-mRNA-1:exon:20646;Parent=Msa0379900-mRNA-1
chr3_1 five_prime_UTR 81346414 81346485 81346414 ID=Msa0379900-mRNA-1:five_prime_utr;Parent=Msa0379900-mRNA-1
chr3_1 five_prime_UTR 81345919 81346293 81345919 ID=Msa0379900-mRNA-1:five_prime_utr;Parent=Msa0379900-mRNA-1
chr3_1 five_prime_UTR 81345820 81345847 81345820 ID=Msa0379900-mRNA-1:five_prime_utr;Parent=Msa0379900-mRNA-1
chr3_1 CDS 81345719 81345819 81345719 ID=Msa0379900-mRNA-1:cds;Parent=Msa0379900-mRNA-1
chr3_1 CDS 81345583 81345628 81345583 ID=Msa0379900-mRNA-1:cds;Parent=Msa0379900-mRNA-1
chr3_1 CDS 81345402 81345485 81345402 ID=Msa0379900-mRNA-1:cds;Parent=Msa0379900-mRNA-1
chr3_1 three_prime_UTR 81345110 81345401 81345110 ID=Msa0379900-mRNA-1:three_prime_utr;Parent=Msa0379900-mRNA-1
Gene Sequence

>Msa0379900

ATGACTGTTCCATTTTTGGCAACTCAAGCGTGGATAAGATCTTTAAACTATTCCATTGTTGACGATTGGAGGCAGTGGTATTCTAATTCTCAAGTAGCAGGATACACAAGGACTTACTCGAATCGGATGACATTTGCAACTGTGAAGGGAGGAGGACATACGGCTCCCGAGTACAAACGTGAAGAATGCTTAGCCATGTTCAGTAGGTGGATATCTAATTACCCACTCTAG

Protein sequence

>Msa0379900

MTVPFLATQAWIRSLNYSIVDDWRQWYSNSQVAGYTRTYSNRMTFATVKGGGHTAPEYKREECLAMFSRWISNYPL*