AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0440030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440030 MtrunA17_Chr3g0086221 71.810 337 94 1 125 460 748 1084 7.39e-156 475
Msa0440030 MtrunA17_Chr3g0086221 61.111 126 45 2 1 126 380 501 3.05e-38 150
Msa0440030 MtrunA17_Chr3g0086091 70.118 338 100 1 123 459 558 895 5.74e-150 454
Msa0440030 MtrunA17_Chr3g0086091 34.216 453 200 20 1 388 192 611 5.04e-42 161
Msa0440030 MtrunA17_Chr3g0087701 71.386 332 94 1 128 459 754 1084 9.33e-149 456
Msa0440030 MtrunA17_Chr3g0087701 31.172 478 209 18 1 439 383 779 3.43e-42 162
Msa0440030 MtrunA17_Chr3g0086161 69.970 333 98 2 128 459 752 1083 4.71e-148 454
Msa0440030 MtrunA17_Chr3g0086161 62.698 126 43 2 1 126 381 502 3.04e-40 156
Msa0440030 MtrunA17_Chr3g0086621 66.269 335 113 0 125 459 747 1081 1.01e-143 443
Msa0440030 MtrunA17_Chr3g0086621 64.286 126 41 3 1 126 381 502 5.08e-40 155
Msa0440030 MtrunA17_Chr3g0087581 66.369 336 113 0 125 460 750 1085 3.07e-143 442
Msa0440030 MtrunA17_Chr3g0087581 63.492 126 40 2 1 126 384 503 6.85e-42 161
Msa0440030 MtrunA17_Chr3g0085451 63.661 366 123 2 123 478 736 1101 2.33e-133 415
Msa0440030 MtrunA17_Chr3g0085451 70.079 127 36 2 1 127 372 496 1.54e-51 190
Msa0440030 MtrunA17_Chr3g0085701 48.069 518 207 9 1 459 382 896 2.84e-130 403
Msa0440030 MtrunA17_Chr3g0087541 63.314 338 121 1 123 460 769 1103 3.73e-126 397
Msa0440030 MtrunA17_Chr3g0087541 63.492 126 44 2 1 126 400 523 6.67e-44 167
Msa0440030 MtrunA17_Chr3g0085801 70.175 285 84 1 128 411 735 1019 6.85e-126 394
Msa0440030 MtrunA17_Chr3g0085801 31.390 446 184 16 1 388 402 783 2.98e-28 120
Msa0440030 MtrunA17_Chr3g0086071 66.426 277 93 0 125 401 367 643 1.32e-118 364
Msa0440030 MtrunA17_Chr3g0086071 61.905 126 44 2 1 126 1 122 1.14e-39 153
Msa0440030 MtrunA17_Chr3g0084081 55.814 344 150 1 118 459 752 1095 1.66e-113 363
Msa0440030 MtrunA17_Chr3g0084081 62.097 124 38 3 1 122 399 515 1.01e-38 152
Msa0440030 MtrunA17_Chr3g0085711 55.848 342 145 2 123 460 321 660 3.00e-109 342
Msa0440030 MtrunA17_Chr3g0085711 59.155 71 28 1 52 122 1 70 5.87e-14 74.7
Msa0440030 MtrunA17_Chr3g0085521 55.752 339 144 2 125 459 748 1084 1.11e-108 350
Msa0440030 MtrunA17_Chr3g0085521 61.594 138 46 3 1 138 376 506 6.81e-41 158
Msa0440030 MtrunA17_Chr3g0085751 55.588 340 145 2 125 460 751 1088 1.27e-108 350
Msa0440030 MtrunA17_Chr3g0085751 58.333 132 42 3 1 126 378 502 2.60e-35 141
Msa0440030 MtrunA17_Chr3g0085501 49.203 439 110 5 123 460 767 1193 2.82e-107 347
Msa0440030 MtrunA17_Chr3g0085501 33.716 522 254 20 1 460 400 891 1.24e-50 187
Msa0440030 MtrunA17_Chr3g0085331 59.627 322 119 2 141 462 886 1196 1.16e-105 344
Msa0440030 MtrunA17_Chr3g0085331 65.891 129 38 2 1 129 400 522 1.75e-46 175
Msa0440030 MtrunA17_Chr3g0084061 55.988 334 143 3 125 456 762 1093 2.65e-105 341
Msa0440030 MtrunA17_Chr3g0084061 53.906 128 55 3 1 126 390 515 8.81e-27 115
Msa0440030 MtrunA17_Chr3g0085471 58.750 320 123 1 141 460 913 1223 2.20e-104 340
Msa0440030 MtrunA17_Chr3g0085471 69.291 127 38 1 1 127 400 525 7.77e-48 179
Msa0440030 MtrunA17_Chr3g0085091 54.839 341 146 4 125 460 759 1096 2.66e-104 338
Msa0440030 MtrunA17_Chr3g0085091 51.471 136 65 1 1 136 386 520 2.50e-30 126
Msa0440030 MtrunA17_Chr3g0085651 58.750 320 121 2 141 460 1006 1314 1.04e-102 337
Msa0440030 MtrunA17_Chr3g0085651 39.881 336 168 11 123 445 755 1069 2.31e-47 177
Msa0440030 MtrunA17_Chr3g0085651 62.602 123 37 4 1 120 390 506 1.43e-36 145
Msa0440030 MtrunA17_Chr3g0085791 71.806 227 63 1 235 460 5 231 6.92e-102 309
Msa0440030 MtrunA17_Chr3g0085161 53.959 341 153 4 123 460 615 954 7.75e-102 329
Msa0440030 MtrunA17_Chr3g0085161 51.799 139 63 2 1 138 245 380 3.93e-34 138
Msa0440030 MtrunA17_Chr3g0084031 53.509 342 144 4 123 459 768 1099 1.79e-100 328
Msa0440030 MtrunA17_Chr3g0084031 62.295 122 40 2 1 122 401 516 3.27e-40 156
Msa0440030 MtrunA17_Chr3g0087731 52.522 337 98 4 123 459 553 827 5.08e-98 317
Msa0440030 MtrunA17_Chr3g0087731 67.717 127 35 2 1 127 193 313 1.16e-45 172
Msa0440030 MtrunA17_Chr3g0084051 52.464 345 150 4 120 460 758 1092 1.13e-96 318
Msa0440030 MtrunA17_Chr3g0084051 61.719 128 44 3 1 128 399 521 9.90e-41 158
Msa0440030 MtrunA17_Chr3g0085131 51.754 342 151 3 123 460 751 1082 2.42e-94 311
Msa0440030 MtrunA17_Chr3g0085131 56.349 126 52 1 1 126 382 504 7.76e-36 143
Msa0440030 MtrunA17_Chr3g0085111 51.320 341 160 5 123 460 752 1089 2.10e-92 306
Msa0440030 MtrunA17_Chr3g0085111 53.175 126 58 1 1 126 381 505 2.35e-31 129
Msa0440030 MtrunA17_Chr3g0085171 50.146 343 164 3 123 460 741 1081 1.34e-88 295
Msa0440030 MtrunA17_Chr3g0085171 51.449 138 63 2 1 138 368 501 5.29e-30 125
Msa0440030 MtrunA17_Chr3g0085481 53.430 277 83 2 123 354 92 367 2.39e-86 272
Msa0440030 MtrunA17_Chr3g0082791 45.395 304 144 5 78 378 728 1012 3.78e-65 229
Msa0440030 MtrunA17_Chr3g0082791 62.810 121 37 3 1 120 401 514 8.72e-40 155
Msa0440030 MtrunA17_Chr3g0091011 51.739 230 105 2 125 350 735 962 8.68e-62 219
Msa0440030 MtrunA17_Chr3g0091011 30.856 444 218 15 7 388 370 786 9.41e-33 134
Msa0440030 MtrunA17_Chr3g0086181 70.504 139 40 1 125 262 745 883 1.60e-57 206
Msa0440030 MtrunA17_Chr3g0086181 34.735 452 212 22 1 397 381 804 1.20e-41 160
Msa0440030 MtrunA17_Chr3g0085431 65.714 140 48 0 123 262 363 502 2.35e-52 186
Msa0440030 MtrunA17_Chr3g0085431 68.800 125 37 2 1 125 33 155 1.82e-48 175
Msa0440030 MtrunA17_Chr3g0086151 65.693 137 47 0 125 261 747 883 3.79e-52 191
Msa0440030 MtrunA17_Chr3g0086151 34.946 372 139 12 1 360 381 661 9.83e-41 157
Msa0440030 MtrunA17_Chr3g0085561 68.992 129 34 2 1 129 369 491 1.36e-48 181
Msa0440030 MtrunA17_Chr3g0085561 60.448 134 51 2 123 256 746 877 6.61e-39 152
Msa0440030 MtrunA17_Chr3g0085561 45.238 126 63 1 141 266 861 980 3.91e-19 91.7
Msa0440030 MtrunA17_Chr8g0352861 37.500 344 189 10 123 450 770 1103 3.20e-45 171
Msa0440030 MtrunA17_Chr8g0352861 53.448 116 48 2 1 116 405 514 6.45e-29 122
Msa0440030 MtrunA17_Chr7g0221481 58.824 136 52 3 1 136 385 516 5.57e-40 155
Msa0440030 MtrunA17_Chr7g0221481 68.539 89 28 0 125 213 760 848 8.66e-32 130
Msa0440030 MtrunA17_Chr3g0085621 55.634 142 53 1 328 459 70 211 4.58e-38 141
Msa0440030 MtrunA17_Chr3g0085621 72.093 86 24 0 374 459 2 87 7.91e-31 121
Msa0440030 MtrunA17_Chr3g0086741 62.698 126 45 2 1 126 408 531 9.77e-38 148
Msa0440030 MtrunA17_Chr3g0086741 57.778 90 38 0 125 214 780 869 1.11e-26 115
Msa0440030 MtrunA17_Chr8g0352831 35.574 357 206 10 123 464 777 1124 1.02e-36 145
Msa0440030 MtrunA17_Chr8g0352831 50.833 120 53 2 1 120 409 522 1.05e-27 118
Msa0440030 MtrunA17_Chr2g0299151 31.765 425 204 12 118 459 744 1165 8.98e-36 143
Msa0440030 MtrunA17_Chr2g0299151 43.590 117 59 2 8 122 389 500 5.75e-20 94.4
Msa0440030 MtrunA17_Chr3g0085551 55.072 138 52 3 1 136 275 404 2.05e-35 141
Msa0440030 MtrunA17_Chr3g0085551 56.075 107 47 0 125 231 643 749 1.49e-31 129
Msa0440030 MtrunA17_Chr3g0084971 31.638 354 208 11 123 457 752 1090 3.51e-33 135
Msa0440030 MtrunA17_Chr3g0084971 45.238 126 63 3 1 126 389 508 3.00e-22 101
Msa0440030 MtrunA17_Chr1g0169901 32.982 285 159 7 123 394 753 1018 1.47e-31 130
Msa0440030 MtrunA17_Chr1g0169901 50.833 120 53 3 1 120 391 504 5.40e-27 116
Msa0440030 MtrunA17_Chr3g0083641 32.836 335 188 12 122 426 737 1064 5.51e-31 128
Msa0440030 MtrunA17_Chr3g0083641 32.143 112 69 2 10 121 383 487 2.28e-11 67.0
Msa0440030 MtrunA17_Chr6g0468381 26.824 507 276 16 14 456 3 478 2.17e-30 125
Msa0440030 MtrunA17_Chr3g0087841 31.092 357 201 11 128 461 765 1099 3.31e-30 126
Msa0440030 MtrunA17_Chr3g0087841 47.414 116 55 3 9 122 406 517 1.68e-23 105
Msa0440030 MtrunA17_Chr3g0080871 31.953 338 190 12 120 426 745 1073 8.15e-30 125
Msa0440030 MtrunA17_Chr3g0080871 39.048 105 60 2 15 119 397 497 4.91e-13 72.4
Msa0440030 MtrunA17_Chr3g0084041 53.774 106 43 1 125 230 102 201 2.42e-29 115
Msa0440030 MtrunA17_Chr3g0082131 29.157 415 193 15 123 439 769 1180 2.85e-29 123
Msa0440030 MtrunA17_Chr3g0082131 42.727 110 54 3 13 120 408 510 8.57e-19 90.5
Msa0440030 MtrunA17_Chr3g0090141 28.442 443 219 12 118 463 755 1196 2.95e-29 123
Msa0440030 MtrunA17_Chr3g0090141 47.500 120 57 3 1 120 400 513 1.08e-24 109
Msa0440030 MtrunA17_Chr4g0008461 32.258 341 194 13 125 436 746 1078 3.14e-29 123
Msa0440030 MtrunA17_Chr4g0008461 39.130 115 62 3 15 125 393 503 3.29e-13 72.8
Msa0440030 MtrunA17_Chr2g0299121 36.630 273 146 8 118 365 760 1030 5.05e-29 122
Msa0440030 MtrunA17_Chr2g0299121 39.669 121 67 2 2 122 400 514 9.21e-20 93.6
Msa0440030 MtrunA17_Chr3g0089651 29.755 326 175 8 128 442 769 1051 2.02e-28 120
Msa0440030 MtrunA17_Chr3g0089651 47.541 122 54 4 1 120 404 517 3.63e-24 107
Msa0440030 MtrunA17_Chr3g0078351 30.411 365 167 13 123 406 43 401 2.07e-28 117
Msa0440030 MtrunA17_Chr2g0299091 35.294 272 151 6 118 365 734 1004 2.92e-28 120
Msa0440030 MtrunA17_Chr2g0299091 40.517 116 63 2 2 117 374 483 1.83e-19 92.8
Msa0440030 MtrunA17_Chr1g0164581 30.118 425 209 14 123 462 745 1166 4.32e-28 119
Msa0440030 MtrunA17_Chr1g0164581 40.909 110 56 3 13 120 384 486 2.18e-16 83.2
Msa0440030 MtrunA17_Chr3g0083681 30.861 337 196 11 120 426 734 1063 6.42e-28 119
Msa0440030 MtrunA17_Chr3g0083681 24.847 491 296 21 11 446 385 857 1.00e-12 71.2
Msa0440030 MtrunA17_Chr3g0089811 29.757 494 284 20 1 443 400 881 6.90e-28 119
Msa0440030 MtrunA17_Chr3g0089811 29.167 336 184 9 118 442 755 1047 2.34e-25 111
Msa0440030 MtrunA17_Chr3g0113791 30.641 359 192 12 125 443 745 1086 2.58e-27 117
Msa0440030 MtrunA17_Chr3g0113791 41.667 120 61 2 1 120 383 493 5.50e-20 94.4
Msa0440030 MtrunA17_Chr1g0189511 50.413 121 57 2 7 126 58 176 2.78e-27 111
Msa0440030 MtrunA17_Chr3g0091061 33.628 339 170 16 128 455 766 1060 3.00e-27 117
Msa0440030 MtrunA17_Chr3g0091061 49.138 116 52 3 9 122 406 516 4.48e-23 103
Msa0440030 MtrunA17_Chr8g0348931 30.211 331 170 11 122 439 765 1047 3.05e-27 117
Msa0440030 MtrunA17_Chr8g0348931 47.934 121 55 4 1 120 407 520 2.22e-25 111
Msa0440030 MtrunA17_Chr3g0083621 31.642 335 197 11 120 426 768 1098 3.07e-27 117
Msa0440030 MtrunA17_Chr3g0083621 27.344 512 287 26 1 454 411 895 1.25e-16 84.0
Msa0440030 MtrunA17_Chr3g0089991 50.413 121 52 4 1 120 404 517 3.50e-27 117
Msa0440030 MtrunA17_Chr3g0089991 29.902 408 210 14 128 461 769 1174 1.01e-23 106
Msa0440030 MtrunA17_Chr3g0083751 31.532 333 185 11 120 413 764 1092 5.94e-27 116
Msa0440030 MtrunA17_Chr3g0083751 32.479 117 72 2 4 120 406 515 1.23e-13 74.3
Msa0440030 MtrunA17_Chr3g0089591 31.180 356 190 12 128 436 816 1163 9.17e-27 115
Msa0440030 MtrunA17_Chr3g0089591 50.909 110 48 3 9 117 411 515 1.38e-22 102
Msa0440030 MtrunA17_Chr3g0083591 30.729 384 216 14 80 421 666 1041 1.22e-26 115
Msa0440030 MtrunA17_Chr3g0083591 35.455 110 64 2 11 120 373 475 5.14e-15 78.6
Msa0440030 MtrunA17_Chr4g0025391 28.450 471 224 14 85 459 734 1187 1.49e-26 115
Msa0440030 MtrunA17_Chr4g0025391 48.305 118 53 4 1 117 399 509 2.32e-21 99.0
Msa0440030 MtrunA17_Chr2g0309721 50.427 117 52 3 1 117 400 510 1.79e-26 114
Msa0440030 MtrunA17_Chr2g0309721 27.381 336 183 8 118 439 752 1040 2.95e-25 110
Msa0440030 MtrunA17_Chr2g0282991 31.063 367 211 11 123 456 759 1116 1.80e-26 114
Msa0440030 MtrunA17_Chr2g0282991 46.774 124 60 2 8 131 401 518 1.54e-22 102
Msa0440030 MtrunA17_Chr2g0282991 37.607 117 67 4 346 459 1078 1191 1.29e-11 67.8
Msa0440030 MtrunA17_Chr3g0089541 29.379 354 173 15 128 466 768 1059 1.96e-26 114
Msa0440030 MtrunA17_Chr3g0089541 48.333 120 56 3 1 120 404 517 4.06e-25 110
Msa0440030 MtrunA17_Chr3g0091081 29.821 446 199 19 123 461 759 1197 2.23e-26 114
Msa0440030 MtrunA17_Chr3g0091081 50.000 112 51 2 9 120 406 512 1.53e-23 105
Msa0440030 MtrunA17_Chr8g0355411 30.072 419 259 15 1 399 398 802 2.45e-26 114
Msa0440030 MtrunA17_Chr3g0083721 41.447 152 82 3 120 265 700 850 3.47e-26 113
Msa0440030 MtrunA17_Chr3g0083721 37.168 113 64 2 8 120 348 453 2.69e-15 79.3
Msa0440030 MtrunA17_Chr3g0089471 31.180 356 190 12 128 436 813 1160 3.96e-26 113
Msa0440030 MtrunA17_Chr3g0089471 49.541 109 51 2 9 117 407 511 1.97e-22 102
Msa0440030 MtrunA17_Chr3g0089441 31.353 303 155 9 128 394 271 556 3.99e-26 113
Msa0440030 MtrunA17_Chr4g0020501 30.796 289 141 6 125 377 634 899 4.17e-26 113
Msa0440030 MtrunA17_Chr4g0020501 49.153 118 52 3 1 117 351 461 1.58e-22 102
Msa0440030 MtrunA17_Chr3g0089601 47.934 121 57 3 1 121 398 512 6.01e-26 112
Msa0440030 MtrunA17_Chr3g0089601 37.762 143 79 2 128 260 763 905 6.07e-20 94.0
Msa0440030 MtrunA17_Chr3g0089501 49.180 122 54 4 1 121 398 512 6.50e-26 112
Msa0440030 MtrunA17_Chr3g0089501 41.667 108 53 2 128 225 763 870 8.69e-16 80.9
Msa0440030 MtrunA17_Chr3g0090401 31.338 284 146 7 118 391 946 1190 7.07e-26 112
Msa0440030 MtrunA17_Chr3g0090401 46.903 113 54 3 9 120 617 724 4.75e-22 100
Msa0440030 MtrunA17_Chr7g0218941 27.679 448 257 16 2 442 397 784 7.17e-26 112
Msa0440030 MtrunA17_Chr3g0084811 42.763 152 81 5 120 265 908 1059 8.75e-26 112
Msa0440030 MtrunA17_Chr3g0084811 37.719 114 64 3 8 121 556 662 5.61e-15 78.6
Msa0440030 MtrunA17_Chr8g0356251 32.362 343 183 11 120 421 783 1117 8.75e-26 112
Msa0440030 MtrunA17_Chr8g0356251 35.833 120 68 3 1 120 426 536 1.01e-14 77.8
Msa0440030 MtrunA17_Chr8g0356251 27.879 330 164 14 135 415 955 1259 1.96e-11 67.0
Msa0440030 MtrunA17_Chr3g0092241 50.000 120 54 3 1 120 400 513 1.40e-25 111
Msa0440030 MtrunA17_Chr3g0092241 29.358 327 174 12 128 442 765 1046 5.93e-22 100
Msa0440030 MtrunA17_Chr3g0090691 32.095 296 133 12 123 399 760 1006 2.01e-25 111
Msa0440030 MtrunA17_Chr3g0090691 49.107 112 52 2 9 120 406 512 7.49e-23 103
Msa0440030 MtrunA17_Chr3g0090371 30.960 323 175 12 128 442 764 1046 2.41e-25 111
Msa0440030 MtrunA17_Chr3g0090371 44.531 128 63 4 9 133 406 528 2.54e-22 101
Msa0440030 MtrunA17_Chr3g0091971 33.762 311 170 9 120 394 687 997 2.73e-25 110
Msa0440030 MtrunA17_Chr3g0091971 36.036 111 62 2 10 120 370 471 7.49e-14 74.7
Msa0440030 MtrunA17_Chr3g0089871 30.678 339 166 10 125 452 765 1045 4.15e-25 110
Msa0440030 MtrunA17_Chr3g0089871 41.379 145 71 6 1 138 399 536 3.97e-23 104
Msa0440030 MtrunA17_Chr7g0248531 45.238 126 57 5 1 122 387 504 5.14e-25 110
Msa0440030 MtrunA17_Chr7g0248531 40.146 137 73 2 128 255 752 888 1.89e-19 92.4
Msa0440030 MtrunA17_Chr3g0082351 31.343 335 182 12 127 421 765 1091 6.41e-25 109
Msa0440030 MtrunA17_Chr3g0082351 25.676 444 267 16 1 398 398 824 1.52e-15 80.1
Msa0440030 MtrunA17_Chr3g0089421 49.180 122 52 4 1 120 402 515 6.92e-25 109
Msa0440030 MtrunA17_Chr3g0089421 28.221 326 179 9 128 442 767 1048 1.57e-22 102
Msa0440030 MtrunA17_Chr3g0113781 38.608 158 90 2 125 277 540 695 7.48e-25 109
Msa0440030 MtrunA17_Chr3g0113781 41.667 120 61 2 1 120 178 288 4.90e-20 94.4
Msa0440030 MtrunA17_Chr6g0468341 27.195 467 269 17 7 423 388 833 7.62e-25 109
Msa0440030 MtrunA17_Chr3g0082311 32.792 308 148 9 143 443 863 1118 8.69e-25 109
Msa0440030 MtrunA17_Chr3g0082311 40.833 120 66 2 120 234 758 877 7.44e-18 87.8
Msa0440030 MtrunA17_Chr3g0082311 36.774 155 86 4 1 149 400 548 2.08e-17 86.3
Msa0440030 MtrunA17_Chr3g0089251 48.333 120 56 3 1 120 429 542 9.61e-25 109
Msa0440030 MtrunA17_Chr3g0089251 29.677 310 163 11 125 422 791 1057 4.83e-21 97.8
Msa0440030 MtrunA17_Chr3g0091121 28.571 336 185 9 118 443 366 656 2.07e-24 107
Msa0440030 MtrunA17_Chr3g0091121 44.915 118 57 3 9 124 18 129 9.84e-23 102
Msa0440030 MtrunA17_Chr3g0089941 42.029 138 70 2 128 255 53 190 2.07e-24 101
Msa0440030 MtrunA17_Chr3g0090431 29.429 333 176 10 123 442 632 918 2.09e-24 108
Msa0440030 MtrunA17_Chr3g0090431 45.528 123 55 4 1 120 272 385 5.59e-24 107
Msa0440030 MtrunA17_Chr3g0089211 47.500 120 57 3 1 120 447 560 2.27e-24 108
Msa0440030 MtrunA17_Chr3g0089211 29.537 281 169 6 125 393 809 1072 5.14e-21 97.8
Msa0440030 MtrunA17_Chr3g0089961 49.180 122 52 4 1 120 403 516 3.24e-24 107
Msa0440030 MtrunA17_Chr3g0089961 40.000 145 77 2 128 262 768 912 4.82e-23 103
Msa0440030 MtrunA17_Chr3g0089931 47.500 120 57 3 1 120 385 498 3.54e-24 106
Msa0440030 MtrunA17_Chr3g0091041 50.000 112 51 2 9 120 391 497 3.63e-24 106
Msa0440030 MtrunA17_Chr3g0089761 48.361 122 53 4 1 120 400 513 5.59e-24 107
Msa0440030 MtrunA17_Chr3g0089761 28.528 326 178 9 128 442 764 1045 1.16e-20 96.7
Msa0440030 MtrunA17_Chr1g0147141 28.947 380 196 14 79 443 724 1044 6.76e-24 106
Msa0440030 MtrunA17_Chr1g0147141 43.878 98 49 3 27 122 426 519 5.98e-15 78.2
Msa0440030 MtrunA17_Chr1g0164391 32.258 310 151 8 141 443 873 1130 3.64e-23 104
Msa0440030 MtrunA17_Chr1g0164391 29.428 367 200 15 120 462 770 1101 4.89e-21 97.8
Msa0440030 MtrunA17_Chr1g0164391 33.000 200 106 7 1 179 400 592 4.00e-16 82.0
Msa0440030 MtrunA17_Chr3g0090651 49.138 116 52 3 9 122 406 516 4.45e-23 103
Msa0440030 MtrunA17_Chr3g0090651 32.971 276 123 12 128 386 766 996 9.11e-23 103
Msa0440030 MtrunA17_Chr3g0089781 49.091 110 52 2 11 120 408 513 5.22e-23 103
Msa0440030 MtrunA17_Chr3g0089781 32.922 243 125 7 128 351 765 988 6.90e-22 100
Msa0440030 MtrunA17_Chr3g0089921 27.397 438 202 15 128 461 16 441 5.38e-23 102
Msa0440030 MtrunA17_Chr6g0484551 48.214 112 54 3 6 117 377 484 6.72e-23 103
Msa0440030 MtrunA17_Chr6g0484551 39.850 133 70 3 118 241 729 860 4.68e-17 84.7
Msa0440030 MtrunA17_Chr2g0308471 41.176 136 72 3 148 277 1 134 1.66e-22 93.6
Msa0440030 MtrunA17_Chr5g0415511 30.137 292 157 10 1 255 393 674 2.51e-22 101
Msa0440030 MtrunA17_Chr5g0414201 32.364 275 154 12 1 261 393 649 3.39e-22 101
Msa0440030 MtrunA17_Chr5g0414201 35.065 154 71 5 119 268 741 869 3.53e-13 72.8
Msa0440030 MtrunA17_Chr6g0470011 30.851 282 163 12 2 268 385 649 3.68e-22 101
Msa0440030 MtrunA17_Chr6g0470011 28.938 273 165 10 120 384 735 986 2.25e-14 76.6
Msa0440030 MtrunA17_Chr8g0338671 31.163 215 106 6 2 179 280 489 6.45e-22 99.8
Msa0440030 MtrunA17_Chr1g0168901 44.697 132 67 2 125 250 733 864 7.57e-22 100
Msa0440030 MtrunA17_Chr1g0168901 36.066 122 69 3 1 122 373 485 1.78e-14 76.6
Msa0440030 MtrunA17_Chr3g0092261 44.628 121 59 4 1 120 444 557 1.20e-21 99.8
Msa0440030 MtrunA17_Chr3g0092261 29.664 327 173 13 128 442 809 1090 1.45e-20 96.3
Msa0440030 MtrunA17_Chr5g0446611 46.218 119 58 2 8 126 404 516 1.38e-21 99.4
Msa0440030 MtrunA17_Chr5g0446611 44.954 109 54 2 123 225 762 870 4.44e-16 81.6
Msa0440030 MtrunA17_Chr6g0470021 30.142 282 158 13 2 265 276 536 1.75e-21 99.0
Msa0440030 MtrunA17_Chr6g0470021 28.516 256 165 7 120 370 625 867 1.26e-14 77.0
Msa0440030 MtrunA17_Chr6g0470081 28.413 271 162 9 2 257 385 638 2.28e-21 98.6
Msa0440030 MtrunA17_Chr6g0470081 25.656 343 177 11 120 392 735 1069 9.80e-16 80.9
Msa0440030 MtrunA17_Chr2g0299141 40.496 121 66 2 2 122 115 229 3.98e-21 95.9
Msa0440030 MtrunA17_Chr8g0346831 43.103 116 64 2 2 117 396 509 1.23e-20 96.3
Msa0440030 MtrunA17_Chr3g0082401 26.225 408 204 11 143 456 50 454 1.23e-20 95.5
Msa0440030 MtrunA17_Chr3g0082401 31.667 300 154 14 177 462 2 264 1.58e-12 70.1
Msa0440030 MtrunA17_Chr3g0089911 42.276 123 59 4 1 120 399 512 3.55e-20 94.4
Msa0440030 MtrunA17_Chr8g0338251 36.872 179 107 4 2 177 382 557 4.42e-20 94.4
Msa0440030 MtrunA17_Chr2g0316291 43.590 117 64 2 1 117 399 513 6.86e-20 94.0
Msa0440030 MtrunA17_Chr3g0078361 44.628 121 59 4 1 120 215 328 1.06e-19 92.0
Msa0440030 MtrunA17_Chr6g0475491 35.503 169 96 4 2 163 398 560 1.10e-19 93.2
Msa0440030 MtrunA17_Chr8g0338391 42.241 116 65 2 2 117 393 506 1.14e-19 93.2
Msa0440030 MtrunA17_Chr6g0470001 28.996 269 156 11 14 265 3 253 1.17e-19 92.8
Msa0440030 MtrunA17_Chr6g0470001 34.532 139 80 4 120 254 342 473 1.49e-13 73.6
Msa0440030 MtrunA17_Chr6g0471941 41.379 116 66 2 2 117 394 507 1.51e-19 92.8
Msa0440030 MtrunA17_Chr5g0430141 40.602 133 73 4 1 132 389 516 1.88e-19 92.8
Msa0440030 MtrunA17_Chr2g0299101 39.669 121 67 2 2 122 400 514 2.96e-19 92.0
Msa0440030 MtrunA17_Chr2g0299101 46.465 99 50 2 118 213 760 858 6.15e-15 78.2
Msa0440030 MtrunA17_Chr5g0413811 41.880 117 64 3 1 117 168 280 3.20e-19 91.7
Msa0440030 MtrunA17_Chr5g0413811 36.364 143 83 3 116 256 510 646 3.92e-13 72.4
Msa0440030 MtrunA17_Chr6g0468021 40.171 117 65 3 2 118 382 493 3.94e-19 91.7
Msa0440030 MtrunA17_Chr6g0468021 29.480 346 188 14 123 456 729 1030 1.81e-17 86.3
Msa0440030 MtrunA17_Chr8g0338261 39.683 126 74 2 1 126 395 518 4.06e-19 91.7
Msa0440030 MtrunA17_Chr3g0082811 26.794 418 237 11 3 372 385 781 4.21e-19 91.3
Msa0440030 MtrunA17_Chr5g0430621 27.593 482 256 20 1 434 388 824 4.32e-19 91.7
Msa0440030 MtrunA17_Chr1g0164631 45.578 147 76 2 125 267 776 922 5.10e-19 91.3
Msa0440030 MtrunA17_Chr1g0164631 41.818 110 59 2 11 120 415 519 5.41e-16 81.6
Msa0440030 MtrunA17_Chr3g0082891 31.541 279 164 10 3 276 385 641 6.31e-19 90.9
Msa0440030 MtrunA17_Chr3g0082871 35.862 145 91 2 3 147 385 527 6.83e-19 90.5
Msa0440030 MtrunA17_Chr8g0337891 39.655 116 68 2 2 117 394 507 1.15e-18 89.7
Msa0440030 MtrunA17_Chr5g0417301 37.879 132 78 3 1 132 339 466 1.15e-18 89.4
Msa0440030 MtrunA17_Chr6g0467911 29.032 279 155 10 2 260 385 640 1.17e-18 89.7
Msa0440030 MtrunA17_Chr3g0113481 39.167 120 64 2 1 120 383 493 1.43e-18 89.7
Msa0440030 MtrunA17_Chr3g0123111 36.429 140 79 4 1 135 383 517 1.95e-18 89.4
Msa0440030 MtrunA17_Chr3g0123111 27.607 326 159 12 103 412 706 970 2.01e-14 76.6
Msa0440030 MtrunA17_Chr8g0338361 40.517 116 67 2 2 117 261 374 1.98e-18 88.6
Msa0440030 MtrunA17_Chr3g0085931 42.735 117 62 3 2 118 385 496 2.45e-18 89.4
Msa0440030 MtrunA17_Chr3g0085931 27.616 344 218 13 124 442 737 1074 1.33e-14 77.4
Msa0440030 MtrunA17_Chr5g0430291 28.571 434 263 17 1 413 388 795 2.79e-18 89.0
Msa0440030 MtrunA17_Chr6g0468361 28.623 276 145 10 14 288 3 227 3.12e-18 87.4
Msa0440030 MtrunA17_Chr6g0467961 39.316 117 66 3 2 118 382 493 3.16e-18 88.6
Msa0440030 MtrunA17_Chr6g0467961 36.296 135 78 4 123 253 729 859 1.07e-13 74.3
Msa0440030 MtrunA17_Chr3g0082881 25.104 482 256 19 3 408 385 837 3.48e-18 88.6
Msa0440030 MtrunA17_Chr5g0431051 39.098 133 75 4 1 132 389 516 4.83e-18 88.2
Msa0440030 MtrunA17_Chr5g0431051 30.242 248 142 8 128 369 745 967 1.13e-12 70.9
Msa0440030 MtrunA17_Chr6g0468451 41.880 117 63 3 2 118 383 494 5.12e-18 88.2
Msa0440030 MtrunA17_Chr6g0468451 27.964 329 223 10 124 445 735 1056 1.39e-16 83.6
Msa0440030 MtrunA17_Chr5g0414311 39.316 117 67 3 1 117 397 509 5.64e-18 88.2
Msa0440030 MtrunA17_Chr5g0414311 29.393 313 183 9 116 394 748 1056 2.44e-13 73.2
Msa0440030 MtrunA17_Chr1g0155321 37.879 132 78 3 1 132 383 510 9.79e-18 87.0
Msa0440030 MtrunA17_Chr1g0155321 32.919 161 98 5 120 276 734 888 3.50e-11 66.2
Msa0440030 MtrunA17_Chr5g0430581 42.017 119 63 4 1 118 382 495 1.77e-17 86.3
Msa0440030 MtrunA17_Chr5g0430581 29.435 248 144 8 128 369 736 958 7.40e-11 65.1
Msa0440030 MtrunA17_Chr6g0468201 42.857 105 56 2 14 118 3 103 1.85e-17 85.9
Msa0440030 MtrunA17_Chr6g0468201 28.313 332 170 11 120 391 333 656 1.40e-16 83.2
Msa0440030 MtrunA17_Chr5g0415471 26.634 612 327 31 1 544 395 952 1.96e-17 86.3
Msa0440030 MtrunA17_Chr5g0415471 28.657 335 192 13 116 413 746 1070 2.23e-12 70.1
Msa0440030 MtrunA17_Chr5g0430951 42.017 119 63 4 1 118 387 500 1.97e-17 86.3
Msa0440030 MtrunA17_Chr3g0082391 40.650 123 63 4 1 121 400 514 2.62e-17 85.5
Msa0440030 MtrunA17_Chr5g0414181 41.026 117 64 3 1 117 392 503 2.86e-17 85.5
Msa0440030 MtrunA17_Chr5g0414181 36.842 152 88 5 119 265 739 887 5.09e-13 72.0
Msa0440030 MtrunA17_Chr7g0244231 27.208 419 239 18 1 378 383 776 4.71e-17 85.1
Msa0440030 MtrunA17_Chr7g0244231 30.182 275 157 11 125 391 736 983 8.67e-13 71.2
Msa0440030 MtrunA17_Chr3g0082371 41.322 121 63 4 1 120 24 137 7.12e-17 83.6
Msa0440030 MtrunA17_Chr3g0082371 50.588 85 40 1 125 207 367 451 1.86e-15 79.0
Msa0440030 MtrunA17_Chr6g0468111 39.316 117 66 3 2 118 226 337 7.19e-17 83.6
Msa0440030 MtrunA17_Chr5g0417251 24.416 471 254 16 1 406 158 591 1.07e-16 83.6
Msa0440030 MtrunA17_Chr4g0027251 27.021 470 265 16 1 427 388 822 1.14e-16 84.0
Msa0440030 MtrunA17_Chr4g0027251 31.250 272 153 11 128 391 750 995 2.64e-14 76.3
Msa0440030 MtrunA17_Chr7g0257191 36.885 122 73 3 1 122 415 532 1.79e-16 83.2
Msa0440030 MtrunA17_Chr6g0468131 28.571 343 205 14 125 446 1 324 1.84e-16 81.3
Msa0440030 MtrunA17_Chr3g0113801 31.783 258 161 9 217 463 145 398 1.99e-16 82.0
Msa0440030 MtrunA17_Chr6g0468101 34.807 181 101 8 1 179 383 548 2.07e-16 83.2
Msa0440030 MtrunA17_Chr6g0468101 29.275 345 210 11 124 443 696 1031 3.20e-16 82.4
Msa0440030 MtrunA17_Chr5g0414231 42.342 111 60 3 1 111 393 499 2.17e-16 82.0
Msa0440030 MtrunA17_Chr3g0087301 29.393 313 186 13 119 423 728 1013 2.37e-16 82.8
Msa0440030 MtrunA17_Chr6g0468251 28.710 310 198 12 119 423 81 372 2.39e-16 81.6
Msa0440030 MtrunA17_Chr1g0164611 28.135 327 158 8 123 446 773 1025 2.58e-16 82.8
Msa0440030 MtrunA17_Chr1g0164611 38.532 109 62 2 13 121 413 516 6.72e-16 81.3
Msa0440030 MtrunA17_Chr5g0429961 25.754 431 226 16 1 378 388 777 2.62e-16 82.8
Msa0440030 MtrunA17_Chr6g0468271 28.996 269 181 8 124 387 731 994 2.65e-16 82.8
Msa0440030 MtrunA17_Chr6g0468271 36.441 118 70 3 1 118 380 492 9.02e-16 80.9
Msa0440030 MtrunA17_Chr4g0010221 37.391 115 67 3 1 113 384 495 3.14e-16 82.4
Msa0440030 MtrunA17_Chr4g0010201 35.593 118 73 2 8 124 392 507 3.21e-16 82.4
Msa0440030 MtrunA17_Chr5g0430511 39.098 133 75 4 1 132 389 516 3.62e-16 82.0
Msa0440030 MtrunA17_Chr5g0430511 26.498 317 179 9 87 391 712 986 3.05e-13 72.8
Msa0440030 MtrunA17_Chr3g0113741 31.783 258 161 9 217 463 109 362 3.95e-16 80.9
Msa0440030 MtrunA17_Chr6g0468151 36.441 118 69 3 1 118 389 500 5.92e-16 81.6
Msa0440030 MtrunA17_Chr6g0468151 27.248 367 173 14 124 461 739 1040 7.15e-15 78.2
Msa0440030 MtrunA17_Chr3g0082101 38.532 109 62 2 13 121 413 516 7.00e-16 81.3
Msa0440030 MtrunA17_Chr3g0082101 30.980 255 125 4 125 376 723 929 4.70e-15 78.6
Msa0440030 MtrunA17_Chr3g0082321 35.099 151 88 3 5 149 348 494 8.13e-16 80.9
Msa0440030 MtrunA17_Chr3g0082321 44.776 67 37 0 125 191 709 775 2.58e-11 66.6
Msa0440030 MtrunA17_Chr8g0338861 37.815 119 72 2 2 120 101 217 9.06e-16 80.5
Msa0440030 MtrunA17_Chr8g0352211 28.146 302 192 9 2 299 1392 1672 1.03e-15 80.9
Msa0440030 MtrunA17_Chr4g0009781 29.496 278 174 8 8 276 392 656 1.15e-15 80.5
Msa0440030 MtrunA17_Chr5g0430641 40.678 118 63 4 1 117 388 499 1.54e-15 80.1
Msa0440030 MtrunA17_Chr5g0430641 29.779 272 158 10 128 391 742 988 6.36e-13 72.0
Msa0440030 MtrunA17_Chr8g0338621 40.741 108 61 3 2 109 397 501 1.66e-15 79.7
Msa0440030 MtrunA17_Chr5g0430441 40.336 119 64 4 1 118 388 500 1.69e-15 80.1
Msa0440030 MtrunA17_Chr4g0010261 32.800 125 81 2 1 124 384 506 2.22e-15 79.7
Msa0440030 MtrunA17_Chr5g0429951 37.594 133 77 4 1 132 388 515 2.44e-15 79.7
Msa0440030 MtrunA17_Chr4g0010251 33.913 115 76 0 1 115 384 498 4.18e-15 79.0
Msa0440030 MtrunA17_Chr6g0468121 40.000 110 62 2 9 118 389 494 4.95e-15 78.6
Msa0440030 MtrunA17_Chr6g0468121 27.596 337 178 12 123 399 732 1062 3.27e-13 72.8
Msa0440030 MtrunA17_Chr1g0155991 39.669 121 63 4 1 118 385 498 5.23e-15 78.6
Msa0440030 MtrunA17_Chr3g0113511 31.518 257 161 9 218 463 110 362 5.33e-15 77.4
Msa0440030 MtrunA17_Chr5g0415551 48.148 81 41 1 125 204 619 699 5.54e-15 78.2
Msa0440030 MtrunA17_Chr5g0414171 42.857 105 56 4 1 105 320 420 7.71e-15 76.6
Msa0440030 MtrunA17_Chr5g0430721 35.200 125 78 2 8 132 435 556 1.43e-14 77.0
Msa0440030 MtrunA17_Chr5g0430721 27.636 275 164 11 125 391 783 1030 2.56e-11 66.6
Msa0440030 MtrunA17_Chr1g0189551 25.482 467 258 15 1 423 424 844 1.55e-14 77.0
Msa0440030 MtrunA17_Chr7g0257541 24.786 468 294 18 1 459 413 831 3.74e-14 75.9
Msa0440030 MtrunA17_Chr4g0051651 38.843 121 61 4 1 109 426 545 6.75e-14 74.7
Msa0440030 MtrunA17_Chr3g0089431 55.932 59 24 1 1 59 404 460 8.69e-14 73.9
Msa0440030 MtrunA17_Chr5g0414211 30.892 314 168 13 119 391 63 368 1.07e-13 73.2
Msa0440030 MtrunA17_Chr7g0257221 37.069 116 67 4 1 115 414 524 1.58e-13 73.6
Msa0440030 MtrunA17_Chr7g0257201 37.931 116 66 4 1 115 414 524 1.77e-13 73.6
Msa0440030 MtrunA17_Chr3g0091961 32.432 111 68 2 11 121 88 191 1.99e-13 72.4
Msa0440030 MtrunA17_Chr6g0456131 27.137 468 270 19 10 452 400 821 3.58e-13 72.8
Msa0440030 MtrunA17_Chr3g0090491 40.404 99 50 3 145 234 1 99 5.54e-13 65.9
Msa0440030 MtrunA17_Chr2g0309151 36.522 115 69 3 1 115 182 292 6.52e-13 71.2
Msa0440030 MtrunA17_Chr8g0338681 41.892 74 41 1 1 74 172 243 9.22e-13 68.2
Msa0440030 MtrunA17_Chr1g0169941 35.652 115 70 3 1 115 174 284 1.09e-12 69.3
Msa0440030 MtrunA17_Chr5g0414161 40.708 113 61 2 125 233 237 347 2.75e-12 68.9
Msa0440030 MtrunA17_Chr8g0392501 24.275 276 162 7 177 442 2 240 3.86e-12 66.6
Msa0440030 MtrunA17_Chr7g0221491 55.172 58 26 0 418 475 1 58 6.23e-12 62.4
Msa0440030 MtrunA17_Chr3g0104421 39.080 87 50 2 1 87 18 101 6.26e-12 62.4
Msa0440030 MtrunA17_Chr7g0248431 36.522 115 69 3 1 115 403 513 8.48e-12 67.8
Msa0440030 MtrunA17_Chr7g0248221 35.652 115 70 3 1 115 403 513 8.58e-12 68.2
Msa0440030 MtrunA17_Chr5g0430341 28.000 275 144 9 123 391 282 508 9.14e-12 67.8
Msa0440030 MtrunA17_Chr2g0282911 39.583 96 52 2 179 268 4 99 9.79e-12 61.6
Msa0440030 MtrunA17_Chr4g0071011 29.084 251 162 8 128 369 237 480 1.10e-11 67.4
Msa0440030 MtrunA17_Chr1g0169951 34.454 119 73 3 1 118 412 526 1.19e-11 67.8
Msa0440030 MtrunA17_Chr2g0308491 70.000 40 12 0 1 40 219 258 1.36e-11 65.1
Msa0440030 MtrunA17_Chr5g0415481 31.847 157 87 3 116 258 312 462 2.93e-11 65.9
Msa0440030 MtrunA17_Chr7g0257251 34.444 90 58 1 1 89 80 169 4.23e-11 62.0
Msa0440030 MtrunA17_Chr6g0468331 25.357 280 168 8 7 256 386 654 5.33e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440030 AT3G14470.1 41.727 139 71 3 1 138 401 530 2.20e-26 114
Msa0440030 AT3G14470.1 40.541 148 78 2 119 256 766 913 7.61e-24 107
Msa0440030 AT3G14470.2 41.727 139 71 3 1 138 401 530 2.20e-26 114
Msa0440030 AT3G14470.2 40.541 148 78 2 119 256 766 913 7.61e-24 107
Msa0440030 AT3G14460.1 45.455 132 61 3 9 140 401 521 2.99e-24 108
Msa0440030 AT3G14460.1 39.552 134 75 2 125 252 766 899 4.28e-22 101
Msa0440030 AT3G14460.1 27.134 328 180 7 144 462 1092 1369 7.16e-19 91.3

Find 131 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAACCCCTTAGCCAATT+TGG 0.162602 3_3:-6507968 None:intergenic
CTTCGCCATCTTTCTTTAAA+AGG 0.165309 3_3:+6508568 Msa0440030:CDS
CCTCTCAAAGAAATCAGTTT+TGG 0.241764 3_3:-6508733 None:intergenic
GTTGCCCAAGTGGTGGTAAA+TGG 0.259917 3_3:-6508039 None:intergenic
GAGAACAAGTTTAGTGAAAA+AGG 0.275179 3_3:-6508610 None:intergenic
ACTTGAGACAACTTTCAATA+TGG 0.286296 3_3:+6508704 Msa0440030:CDS
CTTGAAAAGGTTCTTCCTTT+GGG 0.286951 3_3:+6508420 Msa0440030:CDS
TCCGGTTGGAAGGGAGATTA+TGG 0.291926 3_3:-6507402 None:intergenic
ATGGCAGCAGCTTTCCAAAT+TGG 0.300576 3_3:+6507954 Msa0440030:CDS
GCTTGAAAAGGTTCTTCCTT+TGG 0.310433 3_3:+6508419 Msa0440030:CDS
CTAGGAAACAATTCCAATTC+TGG 0.312065 3_3:-6508664 None:intergenic
ATTGCTTGATTGTCCAGAAT+TGG 0.329663 3_3:+6508651 Msa0440030:CDS
TTCAAATTGTAAAGGAATAA+AGG 0.333478 3_3:+6508087 Msa0440030:CDS
AAGGTCAATTAATCATGTTT+TGG 0.338205 3_3:+6507476 Msa0440030:CDS
CTATATTTCCCAAAGGTTAT+CGG 0.344618 3_3:+6507446 Msa0440030:CDS
CCACCAAATCTTTACTCTCT+TGG 0.346062 3_3:+6508850 Msa0440030:CDS
ACCTTGTATCATATGTTTGT+TGG 0.348431 3_3:-6507597 None:intergenic
TCAAATCTCTGGACTCTCTT+TGG 0.361857 3_3:+6508926 Msa0440030:CDS
TTTGTCAAACCGATAACCTT+TGG 0.378855 3_3:-6507455 None:intergenic
TTGTCAAACCGATAACCTTT+GGG 0.382890 3_3:-6507454 None:intergenic
ACGGAGATGTGATAGAATTC+TGG 0.391062 3_3:+6508378 Msa0440030:CDS
AAACCAAGAGAGTAAAGATT+TGG 0.392067 3_3:-6508853 None:intergenic
GGTGGCAGTAGTTTCTCCTC+TGG 0.396113 3_3:-6508832 None:intergenic
GTATGCAAATAGGCGGTGTT+GGG 0.401315 3_3:+6507695 Msa0440030:CDS
ATGAAAATTGCAAAACTTCA+AGG 0.408002 3_3:-6508162 None:intergenic
ACCGCGCTCCTCCCTCCCTT+TGG 0.414757 3_3:-6508965 None:intergenic
GAGGAATGGGTTTGTGGTGA+AGG 0.416049 3_3:+6508199 Msa0440030:CDS
GGGTTGGTGTTGGATGTTAG+TGG 0.419478 3_3:+6508502 Msa0440030:CDS
TGGTAACTCAATCTCAGTAC+TGG 0.423759 3_3:-6507382 None:intergenic
CTGTTAGCACTATGCGGCGG+TGG 0.424093 3_3:-6509054 None:intergenic
GTAATTGTCCCAAATTGAAA+AGG 0.430282 3_3:+6508251 Msa0440030:CDS
CAGAATTGGAATTGTTTCCT+AGG 0.431107 3_3:+6508665 Msa0440030:CDS
CCCTTCAAGAATGGCAATGT+TGG 0.431693 3_3:-6508482 None:intergenic
GATTGGGAGGAATGGGTTTG+TGG 0.434035 3_3:+6508193 Msa0440030:CDS
TCCAACATTGCCATTCTTGA+AGG 0.446987 3_3:+6508481 Msa0440030:CDS
CATTGCCATTCTTGAAGGGT+TGG 0.452848 3_3:+6508486 Msa0440030:CDS
ACCATAATCTCCCTTCCAAC+CGG 0.454306 3_3:+6507401 Msa0440030:CDS
CTCTATGATGCTATCAACCT+TGG 0.454759 3_3:-6508347 None:intergenic
GATGAATGATTGGGAGGAAT+GGG 0.459668 3_3:+6508186 Msa0440030:CDS
GGATGAATGATTGGGAGGAA+TGG 0.463954 3_3:+6508185 Msa0440030:CDS
TGTATGCAAATAGGCGGTGT+TGG 0.469345 3_3:+6507694 Msa0440030:CDS
CTTTATATTTCAAATTGTAA+AGG 0.470875 3_3:+6508079 Msa0440030:CDS
TTGCCCAAGTGGTGGTAAAT+GGG 0.474313 3_3:-6508038 None:intergenic
GATATAGCAAAATCTGTGTC+AGG 0.475177 3_3:+6507664 Msa0440030:CDS
GTGGCAGTAGTTTCTCCTCT+GGG 0.477783 3_3:-6508831 None:intergenic
CCAAAACTGATTTCTTTGAG+AGG 0.479204 3_3:+6508733 Msa0440030:CDS
GATTTCTTTGAGAGGGGAGT+GGG 0.479522 3_3:+6508741 Msa0440030:CDS
CAAACATATGATACAAGGTT+TGG 0.482909 3_3:+6507601 Msa0440030:CDS
GCTCTTTGCAGATTGTAAGA+TGG 0.484357 3_3:+6509984 Msa0440030:intron
CAAAACTGATTTCTTTGAGA+GGG 0.487297 3_3:+6508734 Msa0440030:CDS
GATTAGAGATTGCAACAAGT+TGG 0.491770 3_3:+6508312 Msa0440030:CDS
GTTAGGTAGCTCTAACCAAC+AGG 0.491925 3_3:-6510009 None:intergenic
CAGCTTTCCAAATTGGCTAA+GGG 0.492264 3_3:+6507961 Msa0440030:CDS
GCAGCTTTCCAAATTGGCTA+AGG 0.493567 3_3:+6507960 Msa0440030:CDS
CAACACCAACCCTTCAAGAA+TGG 0.497279 3_3:-6508491 None:intergenic
AGTTGAAGAGATACTAAGTT+GGG 0.502848 3_3:-6507995 None:intergenic
TATGTGGCGTTTACAATATG+AGG 0.502885 3_3:+6507345 None:intergenic
TATTGAAAGTTGTCTCAAGT+TGG 0.503447 3_3:-6508701 None:intergenic
TAATTGTCCCAAATTGAAAA+GGG 0.503686 3_3:+6508252 Msa0440030:CDS
CATTCTTGAAGGGTTGGTGT+TGG 0.504399 3_3:+6508492 Msa0440030:CDS
CATAAGTGAAGAAGATCAGT+TGG 0.504549 3_3:+6507534 Msa0440030:CDS
CCAAGAGAGTAAAGATTTGG+TGG 0.504948 3_3:-6508850 None:intergenic
AGTTGCCGACAAGCTTGAAA+AGG 0.509773 3_3:+6508407 Msa0440030:CDS
CAATTCGAGATAATGAAGAT+TGG 0.511265 3_3:-6508632 None:intergenic
CAGTTGAAGAGATACTAAGT+TGG 0.514489 3_3:-6507996 None:intergenic
TGTTCCCATTTACCACCACT+TGG 0.514853 3_3:+6508034 Msa0440030:CDS
ATAGGCGGTGTTGGGGTGGA+AGG 0.515826 3_3:+6507703 Msa0440030:CDS
TCTATGATGCTATCAACCTT+GGG 0.516064 3_3:-6508346 None:intergenic
TATAAAGCTCCTTGAGAGAA+GGG 0.519779 3_3:-6508063 None:intergenic
AGAATTGGAATTGTTTCCTA+GGG 0.525401 3_3:+6508666 Msa0440030:CDS
AAACAACGCTTCCGGTTGGA+AGG 0.530091 3_3:-6507412 None:intergenic
GAAGGTTTGTTGAAGTGTTG+CGG 0.531904 3_3:+6507505 Msa0440030:CDS
AAGATCATGCATGATGAAGC+GGG 0.534377 3_3:-6507635 None:intergenic
AAAGAGAGTCCAGAGATTTG+AGG 0.534745 3_3:-6508924 None:intergenic
TCCAACAAACATATGATACA+AGG 0.534912 3_3:+6507596 Msa0440030:CDS
TGATTTCTTTGAGAGGGGAG+TGG 0.537774 3_3:+6508740 Msa0440030:CDS
CTCACTATTGAAGGCTACAA+TGG 0.539310 3_3:+6507935 Msa0440030:intron
TATCAACAGCTTTACACCAA+TGG 0.542410 3_3:+6509454 Msa0440030:CDS
ATATAAAGCTCCTTGAGAGA+AGG 0.543220 3_3:-6508064 None:intergenic
AATAAGCAAAACAACGCTTC+CGG 0.544562 3_3:-6507420 None:intergenic
TGAAAATTGCAAAACTTCAA+GGG 0.544741 3_3:-6508161 None:intergenic
TGGGCAACTCCCTTCTCTCA+AGG 0.550409 3_3:+6508054 Msa0440030:CDS
CCAACATTGCCATTCTTGAA+GGG 0.555640 3_3:+6508482 Msa0440030:CDS
GCAAATAGGCGGTGTTGGGG+TGG 0.559092 3_3:+6507699 Msa0440030:CDS
TGGACTCTCTTTGGTACTCA+AGG 0.560968 3_3:+6508935 Msa0440030:CDS
AATTAGTCACATTCCTTGTG+TGG 0.563837 3_3:+6508995 Msa0440030:CDS
AGCAAAACAACGCTTCCGGT+TGG 0.564735 3_3:-6507416 None:intergenic
CAGTAGTTTCTCCTCTGGGA+AGG 0.565472 3_3:-6508827 None:intergenic
GAAAGTTGTCTCAAGTTGGA+AGG 0.566441 3_3:-6508697 None:intergenic
ATTTCTTTGAGAGGGGAGTG+GGG 0.566591 3_3:+6508742 Msa0440030:CDS
GGAGATTGACGAAATTAAGC+AGG 0.567494 3_3:+6509016 Msa0440030:CDS
CAAGATCATGCATGATGAAG+CGG 0.570874 3_3:-6507636 None:intergenic
TTCATGGATGAATGATTGGG+AGG 0.572664 3_3:+6508180 Msa0440030:CDS
GAGAAGTACCAAAGGGAGGG+AGG 0.576307 3_3:+6508957 Msa0440030:CDS
AGCTTTCCAAATTGGCTAAG+GGG 0.585395 3_3:+6507962 Msa0440030:CDS
AACAACGCTTCCGGTTGGAA+GGG 0.587162 3_3:-6507411 None:intergenic
GTTCCCATTTACCACCACTT+GGG 0.588653 3_3:+6508035 Msa0440030:CDS
ATAAGTGAAGAAGATCAGTT+GGG 0.589306 3_3:+6507535 Msa0440030:CDS
AAAACTGATTTCTTTGAGAG+GGG 0.595130 3_3:+6508735 Msa0440030:CDS
TAGCAACGCAAACACAAAGA+GGG 0.597928 3_3:-6508538 None:intergenic
TGTAAAGGAATAAAGGTCAT+CGG 0.598948 3_3:+6508094 Msa0440030:CDS
ACTGAGAATATTGAACTACA+AGG 0.603540 3_3:+6508891 Msa0440030:CDS
TATGCAAATAGGCGGTGTTG+GGG 0.607758 3_3:+6507696 Msa0440030:CDS
TATTGCTCTATATTTCCCAA+AGG 0.607791 3_3:+6507439 Msa0440030:CDS
GAGAGTCCAGAGATTTGAGG+TGG 0.608001 3_3:-6508921 None:intergenic
GGTAACTCAATCTCAGTACT+GGG 0.608590 3_3:-6507381 None:intergenic
AAGGAGAAGTACCAAAGGGA+GGG 0.610837 3_3:+6508954 Msa0440030:CDS
AAAGGTTATCGGTTTGACAA+AGG 0.614903 3_3:+6507457 Msa0440030:CDS
TGTTAGCACTATGCGGCGGT+GGG 0.615275 3_3:-6509053 None:intergenic
GCATCATAGAGTTAGATCTA+CGG 0.616917 3_3:+6508359 Msa0440030:CDS
GTTGGAAGCATCAATTCCCA+AGG 0.620773 3_3:+6508330 Msa0440030:CDS
TAAATGGGAACATAATCCAC+AGG 0.623545 3_3:-6508023 None:intergenic
ATTTCGTCAATCTCCACACA+AGG 0.623576 3_3:-6509008 None:intergenic
CTGAGAATATTGAACTACAA+GGG 0.626958 3_3:+6508892 Msa0440030:CDS
TACTCAAGGAGAAGTACCAA+AGG 0.628055 3_3:+6508949 Msa0440030:CDS
ATAGCAACGCAAACACAAAG+AGG 0.634326 3_3:-6508539 None:intergenic
ACTCAAGGAGAAGTACCAAA+GGG 0.638748 3_3:+6508950 Msa0440030:CDS
CAAGGAGAAGTACCAAAGGG+AGG 0.638938 3_3:+6508953 Msa0440030:CDS
AAAGGGAGGGAGGAGCGCGG+TGG 0.639629 3_3:+6508967 Msa0440030:CDS
GAAGGGAGTTGCCCAAGTGG+TGG 0.641682 3_3:-6508046 None:intergenic
TCTCTTCAACTGAAGACCTG+TGG 0.643581 3_3:+6508007 Msa0440030:CDS
AGAGAAGGGAGTTGCCCAAG+TGG 0.649414 3_3:-6508049 None:intergenic
ACCAAAGGGAGGGAGGAGCG+CGG 0.659484 3_3:+6508964 Msa0440030:CDS
GATTGTAAGATGGCTCCTGT+TGG 0.662020 3_3:+6509994 Msa0440030:intron
AGCAACGCAAACACAAAGAG+GGG 0.663333 3_3:-6508537 None:intergenic
TTGGAAGGTAGACTTCCCCT+AGG 0.664765 3_3:-6508682 None:intergenic
ATGCTACTGTTAGCACTATG+CGG 0.681870 3_3:-6509060 None:intergenic
AGATCATGCATGATGAAGCG+GGG 0.694136 3_3:-6507634 None:intergenic
GAATTGGAATTGTTTCCTAG+GGG 0.696923 3_3:+6508667 Msa0440030:CDS
CTACTGTTAGCACTATGCGG+CGG 0.736374 3_3:-6509057 None:intergenic
AAACGTGAAGTCCTTCCCAG+AGG 0.770799 3_3:+6508816 Msa0440030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTATATTTCAAATTGTAA+AGG + chr3_3:6508079-6508098 Msa0440030:CDS 15.0%
!!! TTTGTAATTACCATTAATTT+TGG + chr3_3:6509871-6509890 Msa0440030:intron 15.0%
!! TTTCAAGACTAAAATATTTG+CGG + chr3_3:6507881-6507900 Msa0440030:intron 20.0%
!! TTCAAATTGTAAAGGAATAA+AGG + chr3_3:6508087-6508106 Msa0440030:CDS 20.0%
!!! ATAAAGAGTTTTTTAAGCAA+AGG - chr3_3:6508229-6508248 None:intergenic 20.0%
!!! ATCTCCAAATTTTGTAAAAA+AGG - chr3_3:6508295-6508314 None:intergenic 20.0%
!!! AAATTTATTTACAGAGCATT+AGG + chr3_3:6509163-6509182 Msa0440030:intron 20.0%
!! TAGAAAAACGTAACATAAAA+AGG + chr3_3:6509533-6509552 Msa0440030:intron 20.0%
!! AGAAAAACGTAACATAAAAA+GGG + chr3_3:6509534-6509553 Msa0440030:intron 20.0%
!!! ATCATTTTCATATGATTAGT+TGG + chr3_3:6509784-6509803 Msa0440030:intron 20.0%
!!! TCATTTTCATATGATTAGTT+GGG + chr3_3:6509785-6509804 Msa0440030:intron 20.0%
!! AAACAAGAATCAAATCTAAA+TGG - chr3_3:6509853-6509872 None:intergenic 20.0%
!!! TAATTACCATTAATTTTGGT+TGG + chr3_3:6509875-6509894 Msa0440030:intron 20.0%
!! AAGGTCAATTAATCATGTTT+TGG + chr3_3:6507476-6507495 Msa0440030:CDS 25.0%
!!! TCAATTAATCATGTTTTGGA+TGG + chr3_3:6507480-6507499 Msa0440030:CDS 25.0%
! TGAAAATTGCAAAACTTCAA+GGG - chr3_3:6508164-6508183 None:intergenic 25.0%
! ATGAAAATTGCAAAACTTCA+AGG - chr3_3:6508165-6508184 None:intergenic 25.0%
!! TTGAAGTTTTGCAATTTTCA+TGG + chr3_3:6508164-6508183 Msa0440030:CDS 25.0%
!! AATTTTCATGGATGAATGAT+TGG + chr3_3:6508176-6508195 Msa0440030:CDS 25.0%
!! ATTTTCATGGATGAATGATT+GGG + chr3_3:6508177-6508196 Msa0440030:CDS 25.0%
! TAATTGTCCCAAATTGAAAA+GGG + chr3_3:6508252-6508271 Msa0440030:CDS 25.0%
!! CCAAATTTTGTAAAAAAGGA+AGG - chr3_3:6508291-6508310 None:intergenic 25.0%
!!! CCTTCCTTTTTTACAAAATT+TGG + chr3_3:6508288-6508307 Msa0440030:CDS 25.0%
!!! AATTTTTCAGAGTATTGAGT+TGG - chr3_3:6508774-6508793 None:intergenic 25.0%
!!! AGTAGCATATTCTTTTTTAC+AGG + chr3_3:6509075-6509094 Msa0440030:intron 25.0%
! CTGTAAATAAATTTGTGTGA+AGG - chr3_3:6509157-6509176 None:intergenic 25.0%
! AAATTCTACTGAGAATTAGA+AGG + chr3_3:6509237-6509256 Msa0440030:intron 25.0%
! TTAATTGAGTAGATGAAAAC+AGG + chr3_3:6509506-6509525 Msa0440030:intron 25.0%
! GAAAAACGTAACATAAAAAG+GGG + chr3_3:6509535-6509554 Msa0440030:intron 25.0%
!!! TTGTACAATTCAGTTTTTTG+CGG + chr3_3:6509667-6509686 Msa0440030:intron 25.0%
! TTACATCTTATATGTAGGTT+TGG - chr3_3:6509731-6509750 None:intergenic 25.0%
!! GACTTTTACATCTTATATGT+AGG - chr3_3:6509736-6509755 None:intergenic 25.0%
! AAAACTCCAACCAAAATTAA+TGG - chr3_3:6509884-6509903 None:intergenic 25.0%
! CATTAATCAGATATATGCAT+CGG + chr3_3:6509911-6509930 Msa0440030:intron 25.0%
TATTGCTCTATATTTCCCAA+AGG + chr3_3:6507439-6507458 Msa0440030:CDS 30.0%
CTATATTTCCCAAAGGTTAT+CGG + chr3_3:6507446-6507465 Msa0440030:CDS 30.0%
ATAAGTGAAGAAGATCAGTT+GGG + chr3_3:6507535-6507554 Msa0440030:CDS 30.0%
! CAGTTGGGAAATGAAATTTT+TGG + chr3_3:6507550-6507569 Msa0440030:CDS 30.0%
TCCAACAAACATATGATACA+AGG + chr3_3:6507596-6507615 Msa0440030:CDS 30.0%
ACCTTGTATCATATGTTTGT+TGG - chr3_3:6507600-6507619 None:intergenic 30.0%
CAAACATATGATACAAGGTT+TGG + chr3_3:6507601-6507620 Msa0440030:CDS 30.0%
! GGAGAATTTTGTATGCAAAT+AGG + chr3_3:6507685-6507704 Msa0440030:CDS 30.0%
! GAATTTTGTATGCAAATAGG+CGG + chr3_3:6507688-6507707 Msa0440030:CDS 30.0%
!! AGCTTCTTCAAGTTGATATT+TGG - chr3_3:6507917-6507936 None:intergenic 30.0%
AGTTGAAGAGATACTAAGTT+GGG - chr3_3:6507998-6508017 None:intergenic 30.0%
TGTAAAGGAATAAAGGTCAT+CGG + chr3_3:6508094-6508113 Msa0440030:CDS 30.0%
GTAATTGTCCCAAATTGAAA+AGG + chr3_3:6508251-6508270 Msa0440030:CDS 30.0%
!! GATAGCCTTTTAAAGAAAGA+TGG - chr3_3:6508576-6508595 None:intergenic 30.0%
GAGAACAAGTTTAGTGAAAA+AGG - chr3_3:6508613-6508632 None:intergenic 30.0%
CAATTCGAGATAATGAAGAT+TGG - chr3_3:6508635-6508654 None:intergenic 30.0%
AGAATTGGAATTGTTTCCTA+GGG + chr3_3:6508666-6508685 Msa0440030:CDS 30.0%
TATTGAAAGTTGTCTCAAGT+TGG - chr3_3:6508704-6508723 None:intergenic 30.0%
ACTTGAGACAACTTTCAATA+TGG + chr3_3:6508704-6508723 Msa0440030:CDS 30.0%
! CTCTCAAAGAAATCAGTTTT+GGG - chr3_3:6508735-6508754 None:intergenic 30.0%
! CAAAACTGATTTCTTTGAGA+GGG + chr3_3:6508734-6508753 Msa0440030:CDS 30.0%
! AAAACTGATTTCTTTGAGAG+GGG + chr3_3:6508735-6508754 Msa0440030:CDS 30.0%
AAACCAAGAGAGTAAAGATT+TGG - chr3_3:6508856-6508875 None:intergenic 30.0%
ACTGAGAATATTGAACTACA+AGG + chr3_3:6508891-6508910 Msa0440030:CDS 30.0%
CTGAGAATATTGAACTACAA+GGG + chr3_3:6508892-6508911 Msa0440030:CDS 30.0%
! TTTTGTTACAAGCATATCAC+TGG - chr3_3:6509131-6509150 None:intergenic 30.0%
TGTGCAAGCAAATAATGATT+TGG + chr3_3:6509195-6509214 Msa0440030:intron 30.0%
TAGAAGGTTGTGACTTATAA+AGG + chr3_3:6509253-6509272 Msa0440030:intron 30.0%
! TTTACTTTGAAAAATGCAGC+TGG + chr3_3:6509340-6509359 Msa0440030:intron 30.0%
ATCAAAAACTGAAGAAAGCT+AGG + chr3_3:6509398-6509417 Msa0440030:CDS 30.0%
TCAAAAACTGAAGAAAGCTA+GGG + chr3_3:6509399-6509418 Msa0440030:CDS 30.0%
TTCATCTACTCAATTAAGTG+TGG - chr3_3:6509503-6509522 None:intergenic 30.0%
TCCATTCATTGTATGATGTA+CGG + chr3_3:6509592-6509611 Msa0440030:intron 30.0%
!! TGTTTTTGTGTCCAAATTTG+AGG + chr3_3:6509644-6509663 Msa0440030:intron 30.0%
GAATTGTACAACCTCAAATT+TGG - chr3_3:6509658-6509677 None:intergenic 30.0%
CGATGCATATATCTGATTAA+TGG - chr3_3:6509913-6509932 None:intergenic 30.0%
AATAAGCAAAACAACGCTTC+CGG - chr3_3:6507423-6507442 None:intergenic 35.0%
TTGTCAAACCGATAACCTTT+GGG - chr3_3:6507457-6507476 None:intergenic 35.0%
TTTGTCAAACCGATAACCTT+TGG - chr3_3:6507458-6507477 None:intergenic 35.0%
!! AAAGGTTATCGGTTTGACAA+AGG + chr3_3:6507457-6507476 Msa0440030:CDS 35.0%
CATAAGTGAAGAAGATCAGT+TGG + chr3_3:6507534-6507553 Msa0440030:CDS 35.0%
GATATAGCAAAATCTGTGTC+AGG + chr3_3:6507664-6507683 Msa0440030:CDS 35.0%
ATTGAAGAGATCCCAAAATG+TGG - chr3_3:6507747-6507766 None:intergenic 35.0%
TTGAAGAAGCTCACTATTGA+AGG + chr3_3:6507926-6507945 Msa0440030:intron 35.0%
CAGTTGAAGAGATACTAAGT+TGG - chr3_3:6507999-6508018 None:intergenic 35.0%
TAAATGGGAACATAATCCAC+AGG - chr3_3:6508026-6508045 None:intergenic 35.0%
TATAAAGCTCCTTGAGAGAA+GGG - chr3_3:6508066-6508085 None:intergenic 35.0%
ATATAAAGCTCCTTGAGAGA+AGG - chr3_3:6508067-6508086 None:intergenic 35.0%
! GTCATCGGTGAAGAATTTTA+TGG + chr3_3:6508109-6508128 Msa0440030:CDS 35.0%
GATTAGAGATTGCAACAAGT+TGG + chr3_3:6508312-6508331 Msa0440030:CDS 35.0%
TCTATGATGCTATCAACCTT+GGG - chr3_3:6508349-6508368 None:intergenic 35.0%
GCATCATAGAGTTAGATCTA+CGG + chr3_3:6508359-6508378 Msa0440030:CDS 35.0%
!! AAGAACCTTTTCAAGCTTGT+CGG - chr3_3:6508415-6508434 None:intergenic 35.0%
CTTGAAAAGGTTCTTCCTTT+GGG + chr3_3:6508420-6508439 Msa0440030:CDS 35.0%
CTTCGCCATCTTTCTTTAAA+AGG + chr3_3:6508568-6508587 Msa0440030:CDS 35.0%
CAAGTTTAGTGAAAAAGGCA+AGG - chr3_3:6508608-6508627 None:intergenic 35.0%
ATTGCTTGATTGTCCAGAAT+TGG + chr3_3:6508651-6508670 Msa0440030:CDS 35.0%
CTAGGAAACAATTCCAATTC+TGG - chr3_3:6508667-6508686 None:intergenic 35.0%
CAGAATTGGAATTGTTTCCT+AGG + chr3_3:6508665-6508684 Msa0440030:CDS 35.0%
GAATTGGAATTGTTTCCTAG+GGG + chr3_3:6508667-6508686 Msa0440030:CDS 35.0%
! CCTCTCAAAGAAATCAGTTT+TGG - chr3_3:6508736-6508755 None:intergenic 35.0%
! CCAAAACTGATTTCTTTGAG+AGG + chr3_3:6508733-6508752 Msa0440030:CDS 35.0%
AATTAGTCACATTCCTTGTG+TGG + chr3_3:6508995-6509014 Msa0440030:CDS 35.0%
AAGCATATCACTGGTAAACT+TGG - chr3_3:6509122-6509141 None:intergenic 35.0%
TATCAACAGCTTTACACCAA+TGG + chr3_3:6509454-6509473 Msa0440030:CDS 35.0%
TAAGTCCTCACAACAATCTT+AGG + chr3_3:6509477-6509496 Msa0440030:intron 35.0%
TCCGTACATCATACAATGAA+TGG - chr3_3:6509596-6509615 None:intergenic 35.0%
! TCATATGATTAGTTGGGTCA+TGG + chr3_3:6509791-6509810 Msa0440030:intron 35.0%
GGTAACTCAATCTCAGTACT+GGG - chr3_3:6507384-6507403 None:intergenic 40.0%
TGGTAACTCAATCTCAGTAC+TGG - chr3_3:6507385-6507404 None:intergenic 40.0%
!! ATCATGTTTTGGATGGCAGA+AGG + chr3_3:6507487-6507506 Msa0440030:CDS 40.0%
!! GAAGGTTTGTTGAAGTGTTG+CGG + chr3_3:6507505-6507524 Msa0440030:CDS 40.0%
AAGATCATGCATGATGAAGC+GGG - chr3_3:6507638-6507657 None:intergenic 40.0%
CAAGATCATGCATGATGAAG+CGG - chr3_3:6507639-6507658 None:intergenic 40.0%
AGAGAGAATTTGCGAGCTTA+AGG + chr3_3:6507789-6507808 Msa0440030:intron 40.0%
GAGAGAATTTGCGAGCTTAA+GGG + chr3_3:6507790-6507809 Msa0440030:intron 40.0%
CTCACTATTGAAGGCTACAA+TGG + chr3_3:6507935-6507954 Msa0440030:intron 40.0%
CAGCTTTCCAAATTGGCTAA+GGG + chr3_3:6507961-6507980 Msa0440030:CDS 40.0%
AGCTTTCCAAATTGGCTAAG+GGG + chr3_3:6507962-6507981 Msa0440030:CDS 40.0%
TGAAAACCCCTTAGCCAATT+TGG - chr3_3:6507971-6507990 None:intergenic 40.0%
TTCATGGATGAATGATTGGG+AGG + chr3_3:6508180-6508199 Msa0440030:CDS 40.0%
GATGAATGATTGGGAGGAAT+GGG + chr3_3:6508186-6508205 Msa0440030:CDS 40.0%
! AGCTGAGCCCTTTTCAATTT+GGG - chr3_3:6508262-6508281 None:intergenic 40.0%
! AAGCTGAGCCCTTTTCAATT+TGG - chr3_3:6508263-6508282 None:intergenic 40.0%
CTCTATGATGCTATCAACCT+TGG - chr3_3:6508350-6508369 None:intergenic 40.0%
ACGGAGATGTGATAGAATTC+TGG + chr3_3:6508378-6508397 Msa0440030:CDS 40.0%
GCTTGAAAAGGTTCTTCCTT+TGG + chr3_3:6508419-6508438 Msa0440030:CDS 40.0%
!!! CAGTGTATCGATTTTCCCAA+AGG - chr3_3:6508438-6508457 None:intergenic 40.0%
TCCAACATTGCCATTCTTGA+AGG + chr3_3:6508481-6508500 Msa0440030:CDS 40.0%
CCAACATTGCCATTCTTGAA+GGG + chr3_3:6508482-6508501 Msa0440030:CDS 40.0%
TAGCAACGCAAACACAAAGA+GGG - chr3_3:6508541-6508560 None:intergenic 40.0%
ATAGCAACGCAAACACAAAG+AGG - chr3_3:6508542-6508561 None:intergenic 40.0%
GTTTAGTGAAAAAGGCAAGG+AGG - chr3_3:6508605-6508624 None:intergenic 40.0%
!! GAAAGTTGTCTCAAGTTGGA+AGG - chr3_3:6508700-6508719 None:intergenic 40.0%
CCAAGAGAGTAAAGATTTGG+TGG - chr3_3:6508853-6508872 None:intergenic 40.0%
CCACCAAATCTTTACTCTCT+TGG + chr3_3:6508850-6508869 Msa0440030:CDS 40.0%
! TTTTCTCCACCTCAAATCTC+TGG + chr3_3:6508915-6508934 Msa0440030:CDS 40.0%
AAAGAGAGTCCAGAGATTTG+AGG - chr3_3:6508927-6508946 None:intergenic 40.0%
TCAAATCTCTGGACTCTCTT+TGG + chr3_3:6508926-6508945 Msa0440030:CDS 40.0%
!! TACTCAAGGAGAAGTACCAA+AGG + chr3_3:6508949-6508968 Msa0440030:CDS 40.0%
!! ACTCAAGGAGAAGTACCAAA+GGG + chr3_3:6508950-6508969 Msa0440030:CDS 40.0%
ATTTCGTCAATCTCCACACA+AGG - chr3_3:6509011-6509030 None:intergenic 40.0%
GGAGATTGACGAAATTAAGC+AGG + chr3_3:6509016-6509035 Msa0440030:CDS 40.0%
ATGCTACTGTTAGCACTATG+CGG - chr3_3:6509063-6509082 None:intergenic 40.0%
! CTTTGAAAAATGCAGCTGGA+TGG + chr3_3:6509344-6509363 Msa0440030:intron 40.0%
TTGTTGTGAGGACTTACCAT+TGG - chr3_3:6509473-6509492 None:intergenic 40.0%
GGACACAAAAACAGCTGAAA+GGG - chr3_3:6509637-6509656 None:intergenic 40.0%
TGGACACAAAAACAGCTGAA+AGG - chr3_3:6509638-6509657 None:intergenic 40.0%
TTGGGTCATGGTACATTTCT+TGG + chr3_3:6509803-6509822 Msa0440030:intron 40.0%
GCTCTTTGCAGATTGTAAGA+TGG + chr3_3:6509984-6510003 Msa0440030:intron 40.0%
ACCATAATCTCCCTTCCAAC+CGG + chr3_3:6507401-6507420 Msa0440030:CDS 45.0%
AGATCATGCATGATGAAGCG+GGG - chr3_3:6507637-6507656 None:intergenic 45.0%
TGTATGCAAATAGGCGGTGT+TGG + chr3_3:6507694-6507713 Msa0440030:CDS 45.0%
GTATGCAAATAGGCGGTGTT+GGG + chr3_3:6507695-6507714 Msa0440030:CDS 45.0%
! TATGCAAATAGGCGGTGTTG+GGG + chr3_3:6507696-6507715 Msa0440030:CDS 45.0%
AAATGTGGCGTGTCCTTTCA+AGG - chr3_3:6507732-6507751 None:intergenic 45.0%
! TGAAAGGACACGCCACATTT+TGG + chr3_3:6507732-6507751 Msa0440030:intron 45.0%
! GAAAGGACACGCCACATTTT+GGG + chr3_3:6507733-6507752 Msa0440030:intron 45.0%
ATGGCAGCAGCTTTCCAAAT+TGG + chr3_3:6507954-6507973 Msa0440030:CDS 45.0%
GCAGCTTTCCAAATTGGCTA+AGG + chr3_3:6507960-6507979 Msa0440030:CDS 45.0%
TCTCTTCAACTGAAGACCTG+TGG + chr3_3:6508007-6508026 Msa0440030:CDS 45.0%
TGTTCCCATTTACCACCACT+TGG + chr3_3:6508034-6508053 Msa0440030:CDS 45.0%
GTTCCCATTTACCACCACTT+GGG + chr3_3:6508035-6508054 Msa0440030:CDS 45.0%
TTGCCCAAGTGGTGGTAAAT+GGG - chr3_3:6508041-6508060 None:intergenic 45.0%
GGATGAATGATTGGGAGGAA+TGG + chr3_3:6508185-6508204 Msa0440030:CDS 45.0%
!! GTTGGAAGCATCAATTCCCA+AGG + chr3_3:6508330-6508349 Msa0440030:CDS 45.0%
AGTTGCCGACAAGCTTGAAA+AGG + chr3_3:6508407-6508426 Msa0440030:CDS 45.0%
CCCTTCAAGAATGGCAATGT+TGG - chr3_3:6508485-6508504 None:intergenic 45.0%
CATTGCCATTCTTGAAGGGT+TGG + chr3_3:6508486-6508505 Msa0440030:CDS 45.0%
CAACACCAACCCTTCAAGAA+TGG - chr3_3:6508494-6508513 None:intergenic 45.0%
!! CATTCTTGAAGGGTTGGTGT+TGG + chr3_3:6508492-6508511 Msa0440030:CDS 45.0%
AGCAACGCAAACACAAAGAG+GGG - chr3_3:6508540-6508559 None:intergenic 45.0%
! TGATTTCTTTGAGAGGGGAG+TGG + chr3_3:6508740-6508759 Msa0440030:CDS 45.0%
! GATTTCTTTGAGAGGGGAGT+GGG + chr3_3:6508741-6508760 Msa0440030:CDS 45.0%
! ATTTCTTTGAGAGGGGAGTG+GGG + chr3_3:6508742-6508761 Msa0440030:CDS 45.0%
TGGACTCTCTTTGGTACTCA+AGG + chr3_3:6508935-6508954 Msa0440030:CDS 45.0%
!! AAGGAGAAGTACCAAAGGGA+GGG + chr3_3:6508954-6508973 Msa0440030:CDS 45.0%
TGTGGCCTAAGATTGTTGTG+AGG - chr3_3:6509485-6509504 None:intergenic 45.0%
GTCAGAGAACTTTCATGGAG+TGG - chr3_3:6509953-6509972 None:intergenic 45.0%
CATGGGTCAGAGAACTTTCA+TGG - chr3_3:6509958-6509977 None:intergenic 45.0%
CTGCAAAGAGCAATGCACAT+GGG - chr3_3:6509975-6509994 None:intergenic 45.0%
TCTGCAAAGAGCAATGCACA+TGG - chr3_3:6509976-6509995 None:intergenic 45.0%
GATTGTAAGATGGCTCCTGT+TGG + chr3_3:6509994-6510013 Msa0440030:intron 45.0%
TCCGGTTGGAAGGGAGATTA+TGG - chr3_3:6507405-6507424 None:intergenic 50.0%
AACAACGCTTCCGGTTGGAA+GGG - chr3_3:6507414-6507433 None:intergenic 50.0%
AAACAACGCTTCCGGTTGGA+AGG - chr3_3:6507415-6507434 None:intergenic 50.0%
AGCAAAACAACGCTTCCGGT+TGG - chr3_3:6507419-6507438 None:intergenic 50.0%
!! GGGTGGAAGGTATCCTTGAA+AGG + chr3_3:6507716-6507735 Msa0440030:intron 50.0%
GTTGCCCAAGTGGTGGTAAA+TGG - chr3_3:6508042-6508061 None:intergenic 50.0%
! GATTGGGAGGAATGGGTTTG+TGG + chr3_3:6508193-6508212 Msa0440030:CDS 50.0%
! GAGGAATGGGTTTGTGGTGA+AGG + chr3_3:6508199-6508218 Msa0440030:CDS 50.0%
!! GGGTTGGTGTTGGATGTTAG+TGG + chr3_3:6508502-6508521 Msa0440030:CDS 50.0%
TTGGAAGGTAGACTTCCCCT+AGG - chr3_3:6508685-6508704 None:intergenic 50.0%
AAACGTGAAGTCCTTCCCAG+AGG + chr3_3:6508816-6508835 Msa0440030:CDS 50.0%
! CAGTAGTTTCTCCTCTGGGA+AGG - chr3_3:6508830-6508849 None:intergenic 50.0%
GTGGCAGTAGTTTCTCCTCT+GGG - chr3_3:6508834-6508853 None:intergenic 50.0%
GAGAGTCCAGAGATTTGAGG+TGG - chr3_3:6508924-6508943 None:intergenic 50.0%
!! CAAGGAGAAGTACCAAAGGG+AGG + chr3_3:6508953-6508972 Msa0440030:CDS 50.0%
CTACTGTTAGCACTATGCGG+CGG - chr3_3:6509060-6509079 None:intergenic 50.0%
AGAGAAGGGAGTTGCCCAAG+TGG - chr3_3:6508052-6508071 None:intergenic 55.0%
TGGGCAACTCCCTTCTCTCA+AGG + chr3_3:6508054-6508073 Msa0440030:CDS 55.0%
GGTGGCAGTAGTTTCTCCTC+TGG - chr3_3:6508835-6508854 None:intergenic 55.0%
!! GAGAAGTACCAAAGGGAGGG+AGG + chr3_3:6508957-6508976 Msa0440030:CDS 55.0%
TGTTAGCACTATGCGGCGGT+GGG - chr3_3:6509056-6509075 None:intergenic 55.0%
! GCAAATAGGCGGTGTTGGGG+TGG + chr3_3:6507699-6507718 Msa0440030:CDS 60.0%
! ATAGGCGGTGTTGGGGTGGA+AGG + chr3_3:6507703-6507722 Msa0440030:CDS 60.0%
GAAGGGAGTTGCCCAAGTGG+TGG - chr3_3:6508049-6508068 None:intergenic 60.0%
CTGTTAGCACTATGCGGCGG+TGG - chr3_3:6509057-6509076 None:intergenic 60.0%
ACCAAAGGGAGGGAGGAGCG+CGG + chr3_3:6508964-6508983 Msa0440030:CDS 65.0%
ACCGCGCTCCTCCCTCCCTT+TGG - chr3_3:6508968-6508987 None:intergenic 70.0%
! AAAGGGAGGGAGGAGCGCGG+TGG + chr3_3:6508967-6508986 Msa0440030:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 6507346 6510020 6507346 ID=Msa0440030;Name=Msa0440030
chr3_3 mRNA 6507346 6510020 6507346 ID=Msa0440030-mRNA-1;Parent=Msa0440030;Name=Msa0440030-mRNA-1;_AED=0.18;_eAED=0.25;_QI=0|0|0|0.25|1|1|4|0|549
chr3_3 exon 6507346 6507724 6507346 ID=Msa0440030-mRNA-1:exon:1372;Parent=Msa0440030-mRNA-1
chr3_3 exon 6507948 6509075 6507948 ID=Msa0440030-mRNA-1:exon:1373;Parent=Msa0440030-mRNA-1
chr3_3 exon 6509359 6509475 6509359 ID=Msa0440030-mRNA-1:exon:1374;Parent=Msa0440030-mRNA-1
chr3_3 exon 6509995 6510020 6509995 ID=Msa0440030-mRNA-1:exon:1375;Parent=Msa0440030-mRNA-1
chr3_3 CDS 6507346 6507724 6507346 ID=Msa0440030-mRNA-1:cds;Parent=Msa0440030-mRNA-1
chr3_3 CDS 6507948 6509075 6507948 ID=Msa0440030-mRNA-1:cds;Parent=Msa0440030-mRNA-1
chr3_3 CDS 6509359 6509475 6509359 ID=Msa0440030-mRNA-1:cds;Parent=Msa0440030-mRNA-1
chr3_3 CDS 6509995 6510020 6509995 ID=Msa0440030-mRNA-1:cds;Parent=Msa0440030-mRNA-1
Gene Sequence

>Msa0440030

ATGTGGCGTTTACAATATGAGGAAAACAATATTAACCCAGTACTGAGATTGAGTTACCATAATCTCCCTTCCAACCGGAAGCGTTGTTTTGCTTATTGCTCTATATTTCCCAAAGGTTATCGGTTTGACAAAGGTCAATTAATCATGTTTTGGATGGCAGAAGGTTTGTTGAAGTGTTGCGGAACATACATAAGTGAAGAAGATCAGTTGGGAAATGAAATTTTTGGTGATCTTGAGTCAATTTCATTTATCCAACAAACATATGATACAAGGTTTGGTAGTATTGCACCCCGCTTCATCATGCATGATCTTGTCAATGATATAGCAAAATCTGTGTCAGGAGAATTTTGTATGCAAATAGGCGGTGTTGGGGTGGAAGGCTACAATGGCAGCAGCTTTCCAAATTGGCTAAGGGGTTTTCATTTACCCAACTTAGTATCTCTTCAACTGAAGACCTGTGGATTATGTTCCCATTTACCACCACTTGGGCAACTCCCTTCTCTCAAGGAGCTTTATATTTCAAATTGTAAAGGAATAAAGGTCATCGGTGAAGAATTTTATGGTAACAGTTCAACAAATCTTCAGTTCAGATCCCTTGAAGTTTTGCAATTTTCATGGATGAATGATTGGGAGGAATGGGTTTGTGGTGAAGGATTTCCTTTGCTTAAAAAACTCTTTATATGTAATTGTCCCAAATTGAAAAGGGCTCAGCTTCAACACCTTCCTTTTTTACAAAATTTGGAGATTAGAGATTGCAACAAGTTGGAAGCATCAATTCCCAAGGTTGATAGCATCATAGAGTTAGATCTACGGAGATGTGATAGAATTCTGGTAAATGAGTTGCCGACAAGCTTGAAAAGGTTCTTCCTTTGGGAAAATCGATACACTGAGTTCTCTCTAGATCAAAATTTATCCAACATTGCCATTCTTGAAGGGTTGGTGTTGGATGTTAGTGGCTTTGTAGAATGCCCCTCTTTGTGTTTGCGTTGCTATAATTCTCTTCGCCATCTTTCTTTAAAAGGCTATCGCTCTTCCTCCTTGCCTTTTTCACTAAACTTGTTCTCCAATCTTCATTATCTCGAATTGCTTGATTGTCCAGAATTGGAATTGTTTCCTAGGGGAAGTCTACCTTCCAACTTGAGACAACTTTCAATATGGAATTGCCCAAAACTGATTTCTTTGAGAGGGGAGTGGGGTTTGTTCCAACTCAATACTCTGAAAAATTTCAGTGTTAATGATGAGTTTGAAAACGTGAAGTCCTTCCCAGAGGAGAAACTACTGCCACCAAATCTTTACTCTCTTGGTTTGTATAATTGTTCACAACTGAGAATATTGAACTACAAGGGTTTTCTCCACCTCAAATCTCTGGACTCTCTTTGGTACTCAAGGAGAAGTACCAAAGGGAGGGAGGAGCGCGGTGGCATACAATTAGTCACATTCCTTGTGTGGAGATTGACGAAATTAAGCAGGAATGAGTTGTTAATCCCACCGCCGCATAGTGCTAACACTGGATGGCATAAATATCAAAACTATCGAGCAGCTTTATATCAAAAACTGAAGAAAGCTAGGGAGTTGATCTTGAACATTGAAACGCATAATTTGTATCAACAGCTTTACACCAATGATTGTAAGATGGCTCCTGTTGGTTAG
Protein sequence

>Msa0440030

MWRLQYEENNINPVLRLSYHNLPSNRKRCFAYCSIFPKGYRFDKGQLIMFWMAEGLLKCCGTYISEEDQLGNEIFGDLESISFIQQTYDTRFGSIAPRFIMHDLVNDIAKSVSGEFCMQIGGVGVEGYNGSSFPNWLRGFHLPNLVSLQLKTCGLCSHLPPLGQLPSLKELYISNCKGIKVIGEEFYGNSSTNLQFRSLEVLQFSWMNDWEEWVCGEGFPLLKKLFICNCPKLKRAQLQHLPFLQNLEIRDCNKLEASIPKVDSIIELDLRRCDRILVNELPTSLKRFFLWENRYTEFSLDQNLSNIAILEGLVLDVSGFVECPSLCLRCYNSLRHLSLKGYRSSSLPFSLNLFSNLHYLELLDCPELELFPRGSLPSNLRQLSIWNCPKLISLRGEWGLFQLNTLKNFSVNDEFENVKSFPEEKLLPPNLYSLGLYNCSQLRILNYKGFLHLKSLDSLWYSRRSTKGREERGGIQLVTFLVWRLTKLSRNELLIPPPHSANTGWHKYQNYRAALYQKLKKARELILNIETHNLYQQLYTNDCKMAPVG*