AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0440380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440380 MtrunA17_Chr1g0213791 89.017 346 16 7 1 327 1 343 1.81e-177 494
Msa0440380 MtrunA17_Chr1g0174271 42.339 248 115 8 99 321 126 370 1.53e-41 148
Msa0440380 MtrunA17_Chr4g0032951 62.617 107 39 1 220 325 325 431 9.75e-38 139
Msa0440380 MtrunA17_Chr8g0351881 33.780 373 167 15 16 321 29 388 4.85e-37 136
Msa0440380 MtrunA17_Chr2g0329041 37.597 258 125 9 96 325 158 407 1.64e-34 130
Msa0440380 MtrunA17_Chr3g0087771 38.492 252 104 9 100 322 166 395 3.92e-34 129
Msa0440380 MtrunA17_Chr4g0014771 61.538 91 35 0 231 321 100 190 8.32e-34 123
Msa0440380 MtrunA17_Chr7g0258181 50.000 124 57 3 205 325 198 319 1.32e-29 115
Msa0440380 MtrunA17_Chr4g0074161 53.846 65 29 1 248 312 205 268 6.53e-14 72.0
Msa0440380 MtrunA17_Chr1g0190731 50.769 65 31 1 248 312 192 255 3.87e-12 66.2
Msa0440380 MtrunA17_Chr3g0131771 50.000 64 32 0 249 312 147 210 7.69e-12 65.5
Msa0440380 MtrunA17_Chr8g0339091 47.059 68 36 0 249 316 291 358 2.05e-11 64.7
Msa0440380 MtrunA17_Chr1g0152651 50.000 68 33 1 248 315 273 339 2.12e-11 64.3
Msa0440380 MtrunA17_Chr3g0144641 47.059 68 36 0 249 316 191 258 2.27e-11 64.3
Msa0440380 MtrunA17_Chr5g0393721 50.000 68 33 1 248 315 223 289 2.46e-11 63.9
Msa0440380 MtrunA17_Chr8g0365941 47.059 68 36 0 249 316 305 372 2.61e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440380 AT1G05805.1 43.662 355 127 11 27 325 22 359 4.18e-70 223
Msa0440380 AT2G43140.2 50.190 263 73 12 96 325 71 308 1.36e-63 204
Msa0440380 AT2G43140.1 55.941 202 58 8 140 325 25 211 1.61e-60 193
Msa0440380 AT2G42280.1 35.376 359 155 12 26 325 15 355 1.21e-36 135
Msa0440380 AT1G51140.1 61.765 102 35 1 220 321 279 376 6.25e-36 134
Msa0440380 AT1G35460.1 61.290 93 36 0 233 325 165 257 7.91e-36 130
Msa0440380 AT4G09180.1 60.870 92 36 0 234 325 169 260 9.51e-34 125
Msa0440380 AT2G42280.3 35.465 344 145 12 26 310 15 340 1.34e-32 124
Msa0440380 AT1G35460.2 57.500 80 26 2 220 291 144 223 2.36e-23 96.7
Msa0440380 AT2G24260.2 55.385 65 28 1 248 312 34 97 7.67e-14 70.5
Msa0440380 AT2G24260.1 55.385 65 28 1 248 312 137 200 1.48e-13 70.9
Msa0440380 AT5G58010.1 50.769 65 31 1 248 312 98 161 2.31e-13 70.1
Msa0440380 AT4G30980.1 53.846 65 29 1 248 312 129 192 2.54e-13 70.1
Msa0440380 AT4G30980.2 53.846 65 29 1 248 312 177 240 3.67e-13 70.1
Msa0440380 AT1G25330.1 45.833 72 37 1 241 312 98 167 3.17e-12 65.5
Msa0440380 AT4G34530.1 50.000 64 32 0 249 312 172 235 4.74e-12 66.6
Msa0440380 AT5G50915.1 44.737 76 40 1 241 316 130 203 8.25e-12 65.5
Msa0440380 AT5G50915.2 44.737 76 40 1 241 316 130 203 8.25e-12 65.5
Msa0440380 AT5G50915.3 44.737 76 40 1 241 316 130 203 9.45e-12 65.1
Msa0440380 AT5G50915.4 44.737 76 40 1 241 316 130 203 9.45e-12 65.1
Msa0440380 AT1G68920.3 44.737 76 41 1 241 316 295 369 1.23e-11 65.9
Msa0440380 AT1G68920.1 44.737 76 41 1 241 316 296 370 1.24e-11 65.9
Msa0440380 AT1G68920.4 44.737 76 41 1 241 316 296 370 1.24e-11 65.9
Msa0440380 AT1G68920.2 44.737 76 41 1 241 316 296 370 1.24e-11 65.9
Msa0440380 AT1G26260.4 45.333 75 38 1 241 312 212 286 1.48e-11 65.1
Msa0440380 AT1G26260.1 45.333 75 38 1 241 312 212 286 1.48e-11 65.1
Msa0440380 AT1G26260.6 45.333 75 38 1 241 312 212 286 1.48e-11 65.1
Msa0440380 AT1G26260.2 45.333 75 38 1 241 312 212 286 1.48e-11 65.1
Msa0440380 AT1G26260.5 45.333 75 38 1 241 312 190 264 1.53e-11 65.1
Msa0440380 AT1G26260.3 45.333 75 38 1 241 312 161 235 1.96e-11 64.7
Msa0440380 AT2G18300.2 47.059 68 36 0 249 316 185 252 3.63e-11 63.9
Msa0440380 AT2G18300.1 47.059 68 36 0 249 316 185 252 3.83e-11 63.5
Msa0440380 AT4G36540.2 48.438 64 33 0 249 312 141 204 5.61e-11 63.2
Msa0440380 AT4G36540.1 48.438 64 33 0 249 312 141 204 5.68e-11 63.2
Msa0440380 AT5G48560.1 43.421 76 41 1 241 316 295 368 7.38e-11 63.5
Msa0440380 AT5G48560.2 43.421 76 41 1 241 316 295 368 7.79e-11 63.2

Find 121 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGGTTTGGGTGGGGTTG+AGG 0.204400 3_3:+7686515 None:intergenic
GTTGTTGTTGTTATTATTAT+CGG 0.271568 3_3:+7685705 None:intergenic
AAGAAGCAAGTTGGTGGTTT+GGG 0.287639 3_3:+7686504 None:intergenic
GGTGGTTTGGGTGGGGTTGA+GGG 0.302187 3_3:+7686516 None:intergenic
TTATTCAGACATGCTGGATT+TGG 0.325679 3_3:-7682525 Msa0440380:CDS
GGAGGATCACGCCTTCTTCC+TGG 0.332014 3_3:-7686217 Msa0440380:CDS
GAGTAGTTAGCATACGAAAA+TGG 0.350906 3_3:-7686690 Msa0440380:five_prime_UTR
TCCTCGTAGCATTGCTGAAC+GGG 0.362115 3_3:-7685329 Msa0440380:intron
GGTCAAGCTGGTGGCTTTGA+TGG 0.364612 3_3:-7686091 Msa0440380:CDS
GCAAGTTGGTGGTTTGGGTG+GGG 0.376606 3_3:+7686509 None:intergenic
TTGTTGTTGTTATTATTATC+GGG 0.382053 3_3:+7685706 None:intergenic
TTTACAAGGGACAGAATCTT+GGG 0.382108 3_3:+7685381 None:intergenic
AATTATACCTTATCCATGTT+AGG 0.394411 3_3:+7685149 None:intergenic
CTCTGCTGTTGTTGTTGTTG+TGG 0.405143 3_3:+7686127 None:intergenic
GCATCAGCAGCAGCTGGAAA+TGG 0.408966 3_3:-7685766 Msa0440380:CDS
TAAGAAGCAAGTTGGTGGTT+TGG 0.410636 3_3:+7686503 None:intergenic
AAATAATGTTGTCCCGTTCC+AGG 0.410987 3_3:+7686199 None:intergenic
AAGTCTGAATTGAGTTTCAC+TGG 0.419589 3_3:-7685838 Msa0440380:CDS
AACGGGACTAGTTAGAAATC+TGG 0.423807 3_3:-7681901 Msa0440380:three_prime_UTR
AGCAAGTTGGTGGTTTGGGT+GGG 0.424425 3_3:+7686508 None:intergenic
GAAAGAAGGCGGCAATGGTA+TGG 0.439610 3_3:-7686736 Msa0440380:five_prime_UTR
AAGCAAGTTGGTGGTTTGGG+TGG 0.449248 3_3:+7686507 None:intergenic
TAGTCTCCCACAAACTTCTC+TGG 0.449517 3_3:-7685431 Msa0440380:CDS
TTCAGACATGCTGGATTTGG+CGG 0.454145 3_3:-7682522 Msa0440380:CDS
TCACGCCTTCTTCCTGGAAC+GGG 0.457043 3_3:-7686211 Msa0440380:CDS
GTATCGTCCACCTTCCTCAT+CGG 0.462261 3_3:-7686362 Msa0440380:CDS
TGGCAAGTTGAAGAAGTTGC+AGG 0.465868 3_3:-7685180 Msa0440380:CDS
GAGAGAAGAACTAGAATAAG+TGG 0.469542 3_3:-7685200 Msa0440380:CDS
AGGTCTTCAAACTCAAGTTC+AGG 0.476074 3_3:-7682486 Msa0440380:intron
TAGAAGAATAAGAAGCAAGT+TGG 0.476152 3_3:+7686495 None:intergenic
GGGGCCTCCACCCCAGGTAT+TGG 0.479871 3_3:+7685726 None:intergenic
ACAGAGCTCCATCAGTCAAA+CGG 0.480020 3_3:-7686308 Msa0440380:CDS
TATCGTCCACCTTCCTCATC+GGG 0.481788 3_3:-7686361 Msa0440380:CDS
TATGATTGAGAGTGGCTAGA+TGG 0.483070 3_3:+7686023 None:intergenic
CAGAGCTCCATCAGTCAAAC+GGG 0.487084 3_3:-7686307 Msa0440380:CDS
AAGAATAAGAAGCAAGTTGG+TGG 0.487221 3_3:+7686498 None:intergenic
ATTATCGGGGCCTCCACCCC+AGG 0.489981 3_3:+7685720 None:intergenic
ACCACTGTGGATGCCATCAT+AGG 0.495661 3_3:-7686244 Msa0440380:CDS
ATGAGTGGCGCATCCACGCT+TGG 0.498051 3_3:+7685351 None:intergenic
AAGAAGGTCGGGATCATCAT+TGG 0.499212 3_3:+7685578 None:intergenic
AACAAGTTATTCAGACATGC+TGG 0.500068 3_3:-7682531 Msa0440380:CDS
TGTACTTTGTTTGCATCCGC+AGG 0.501831 3_3:+7682223 None:intergenic
CCCACAAACTTCTCTGGAGA+TGG 0.503550 3_3:-7685425 Msa0440380:CDS
GTTAAAAGTATTGTACAAGT+GGG 0.507074 3_3:-7686604 Msa0440380:five_prime_UTR
TAATTTAACGAATGGAAAGA+AGG 0.507445 3_3:-7686750 None:intergenic
CAATGAATAACTTATTCTCA+TGG 0.509493 3_3:-7681945 Msa0440380:three_prime_UTR
CCTTGTACCTAACATGGATA+AGG 0.512854 3_3:-7685156 Msa0440380:intron
CCTTATCCATGTTAGGTACA+AGG 0.519581 3_3:+7685156 None:intergenic
CATCATAACAATAACAATAA+CGG 0.524224 3_3:-7685998 Msa0440380:intron
CAAACGGGTCTCACAAGGTA+TGG 0.525076 3_3:-7686292 Msa0440380:CDS
AAAGAAGGCGGCAATGGTAT+GGG 0.526664 3_3:-7686735 Msa0440380:five_prime_UTR
AGGCAATGTAGAAGAAGGTC+GGG 0.527337 3_3:+7685567 None:intergenic
GTGGTGTTGAGGAGAGAGCT+AGG 0.530531 3_3:+7686262 None:intergenic
GATTATGCATCAGCAGCAGC+TGG 0.531366 3_3:-7685772 Msa0440380:CDS
GGCTAGATGGTTGAGAAAGC+CGG 0.532966 3_3:+7686036 None:intergenic
TGCATACTAGTACCAATACC+TGG 0.536914 3_3:-7685738 Msa0440380:CDS
GTTGTCCCGTTCCAGGAAGA+AGG 0.539397 3_3:+7686206 None:intergenic
CGAAAATGGAGATACGTTGA+AGG 0.543637 3_3:-7686676 Msa0440380:five_prime_UTR
AGTTAAAAGTATTGTACAAG+TGG 0.543783 3_3:-7686605 Msa0440380:five_prime_UTR
CCATCTCCAGAGAAGTTTGT+GGG 0.544047 3_3:+7685425 None:intergenic
TGTAAAATCCGTGCCAAGCG+TGG 0.544695 3_3:-7685364 Msa0440380:CDS
GGGGAATATTATGCATAAGC+TGG 0.546019 3_3:+7685401 None:intergenic
TGGCGCATCCACGCTTGGCA+CGG 0.548021 3_3:+7685356 None:intergenic
CCTCAATGCCCTCGAAACTC+AGG 0.548042 3_3:-7685547 Msa0440380:intron
ATACTTGTATTTGAAAGTAG+AGG 0.552797 3_3:-7682018 Msa0440380:three_prime_UTR
ATCCTCGTAGCATTGCTGAA+CGG 0.552987 3_3:-7685330 Msa0440380:CDS
TGTGAGACCCGTTTGACTGA+TGG 0.553828 3_3:+7686300 None:intergenic
AGTACCAATACCTGGGGTGG+AGG 0.556362 3_3:-7685730 Msa0440380:CDS
GAATGGAAAGAAGGCGGCAA+TGG 0.556862 3_3:-7686741 Msa0440380:five_prime_UTR
TCCATCTCCAGAGAAGTTTG+TGG 0.557386 3_3:+7685424 None:intergenic
TGATCCTCCTACTCCTATGA+TGG 0.563521 3_3:+7686231 None:intergenic
GTCGGGATCATCATTGGTGT+CGG 0.563524 3_3:+7685584 None:intergenic
TGTTGTTGTTATTATTATCG+GGG 0.564933 3_3:+7685707 None:intergenic
TCTTCTTACGAAGGTCAAGC+TGG 0.565420 3_3:-7686103 Msa0440380:CDS
ATCACGCCTTCTTCCTGGAA+CGG 0.566174 3_3:-7686212 Msa0440380:CDS
GGCACTGTGCATAGAAGTCA+AGG 0.570057 3_3:-7682171 Msa0440380:three_prime_UTR
CATTGAGGCAATGTAGAAGA+AGG 0.573373 3_3:+7685562 None:intergenic
AGTCTGAATTGAGTTTCACT+GGG 0.575142 3_3:-7685837 Msa0440380:CDS
CCTGAGTTTCGAGGGCATTG+AGG 0.579102 3_3:+7685547 None:intergenic
AGATGGTTGAGAAAGCCGGC+TGG 0.579941 3_3:+7686040 None:intergenic
GAGGCAATGTAGAAGAAGGT+CGG 0.583589 3_3:+7685566 None:intergenic
GTGGATGCCATCATAGGAGT+AGG 0.587569 3_3:-7686238 Msa0440380:CDS
CTGTTGTTGCTGAGACGAAG+AGG 0.588667 3_3:+7686327 None:intergenic
GAGACTAAGACAATTGAAGA+AGG 0.591621 3_3:+7686433 None:intergenic
AAATGGAGATACGTTGAAGG+TGG 0.592110 3_3:-7686673 Msa0440380:five_prime_UTR
TTGGCGGTTCAACATATCAA+AGG 0.593157 3_3:-7682506 Msa0440380:CDS
AGATGGTACCTGAGTTTCGA+GGG 0.602433 3_3:+7685539 None:intergenic
GCATACTAGTACCAATACCT+GGG 0.607090 3_3:-7685737 Msa0440380:CDS
GACCTTGAGAATTGCACCTG+CGG 0.607185 3_3:-7682239 Msa0440380:CDS
CGTCAGAAAAGCTCTCCAGC+CGG 0.607974 3_3:-7686055 Msa0440380:CDS
TGGACGATACATGATGATGA+AGG 0.609795 3_3:+7686375 None:intergenic
CAACTTTAAAAGAATAACGA+AGG 0.609890 3_3:-7682119 Msa0440380:three_prime_UTR
AGCAATGCTACGAGGATGAG+TGG 0.612328 3_3:+7685336 None:intergenic
GATGCCATCATAGGAGTAGG+AGG 0.612834 3_3:-7686235 Msa0440380:CDS
ATCCGCAGGTGCAATTCTCA+AGG 0.615432 3_3:+7682237 None:intergenic
TATTGTACAAGTGGGGTGTG+AGG 0.616461 3_3:-7686596 Msa0440380:five_prime_UTR
GAAGAAGAACCCGATGAGGA+AGG 0.617996 3_3:+7686352 None:intergenic
GAAGAACCCGATGAGGAAGG+TGG 0.619178 3_3:+7686355 None:intergenic
TTCTAGACTACGTCTACCAC+AGG 0.619562 3_3:+7682065 None:intergenic
TTGATTGAATTGCAGCTGGG+GGG 0.621095 3_3:-7685891 Msa0440380:intron
ATGATGATTATGATTGAGAG+TGG 0.624275 3_3:+7686015 None:intergenic
AATGGAGATACGTTGAAGGT+GGG 0.624586 3_3:-7686672 Msa0440380:five_prime_UTR
TCAGTCAAACGGGTCTCACA+AGG 0.625307 3_3:-7686297 Msa0440380:CDS
ACTAGTACCAATACCTGGGG+TGG 0.626810 3_3:-7685733 Msa0440380:CDS
GAGATGGTACCTGAGTTTCG+AGG 0.631100 3_3:+7685538 None:intergenic
TCGATCAATCTGTGTGCGAG+CGG 0.634546 3_3:+7686411 None:intergenic
TGGCATCCACAGTGGTGTTG+AGG 0.637238 3_3:+7686251 None:intergenic
TTAAAAGTATTGTACAAGTG+GGG 0.642477 3_3:-7686603 Msa0440380:five_prime_UTR
TCTTACGAAGGTCAAGCTGG+TGG 0.649831 3_3:-7686100 Msa0440380:CDS
GCAGGACCTTGTACCTAACA+TGG 0.655399 3_3:-7685162 Msa0440380:CDS
TTTAACGAATGGAAAGAAGG+CGG 0.657049 3_3:-7686747 None:intergenic
TTACAAGGGACAGAATCTTG+GGG 0.662437 3_3:+7685382 None:intergenic
GGAAGAAGAAGAACCCGATG+AGG 0.673921 3_3:+7686348 None:intergenic
TCCTATGATGGCATCCACAG+TGG 0.685277 3_3:+7686243 None:intergenic
CAGCAGAGATCTTCTTACGA+AGG 0.692275 3_3:-7686112 Msa0440380:CDS
CTCTCTCCTCAACACCACTG+TGG 0.695914 3_3:-7686257 Msa0440380:CDS
ACCCGTTCAGCAATGCTACG+AGG 0.708822 3_3:+7685328 None:intergenic
TCTGAATTGAGTTTCACTGG+GGG 0.716416 3_3:-7685835 Msa0440380:CDS
CATACTAGTACCAATACCTG+GGG 0.719667 3_3:-7685736 Msa0440380:CDS
GTCTGAATTGAGTTTCACTG+GGG 0.720808 3_3:-7685836 Msa0440380:CDS
TGTATGTTGTAATCTACCTG+TGG 0.747002 3_3:-7682081 Msa0440380:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAATTATTTATGTATTTA+AGG + chr3_3:7684706-7684725 None:intergenic 10.0%
!! AAAATTAATATTTCATTGAT+AGG - chr3_3:7686256-7686275 Msa0440380:CDS 10.0%
!! AAACAAACAAAAAGATATAA+TGG + chr3_3:7682073-7682092 None:intergenic 15.0%
!! TAACTAAAAATGAAATAATG+TGG + chr3_3:7683140-7683159 None:intergenic 15.0%
!! TCTATTAGAAACTTAATTAA+GGG + chr3_3:7683764-7683783 None:intergenic 15.0%
!!! TTCGTTTTTTTATAAAACTA+TGG - chr3_3:7684118-7684137 Msa0440380:intron 15.0%
!!! CTTTTAGATATATACTTTTA+TGG + chr3_3:7684384-7684403 None:intergenic 15.0%
!!! TTTATGTATGATAGTTTTTA+GGG + chr3_3:7684623-7684642 None:intergenic 15.0%
!!! ATTTATGTATGATAGTTTTT+AGG + chr3_3:7684624-7684643 None:intergenic 15.0%
!!! TCTTACTTTGAAAAATAAAA+AGG + chr3_3:7685804-7685823 None:intergenic 15.0%
!! AATTATGAACTAATTTAACT+TGG + chr3_3:7685879-7685898 None:intergenic 15.0%
!!! ATATTTTCTACAATAAGTAT+TGG - chr3_3:7685950-7685969 Msa0440380:intron 15.0%
!! CATCATAACAATAACAATAA+CGG - chr3_3:7682624-7682643 Msa0440380:intron 20.0%
!!! TTGTTGTTGTTATTATTATC+GGG + chr3_3:7682919-7682938 None:intergenic 20.0%
!!! GTTGTTGTTGTTATTATTAT+CGG + chr3_3:7682920-7682939 None:intergenic 20.0%
!! ATTAATATTGTGAAAAGAGA+TGG + chr3_3:7683103-7683122 None:intergenic 20.0%
!! CTAGCAAATGAATTAATAAT+AGG + chr3_3:7683536-7683555 None:intergenic 20.0%
!!! AAACATGATGATGATAAATT+AGG + chr3_3:7683570-7683589 None:intergenic 20.0%
!! ATTTATCATCATCATGTTTA+AGG - chr3_3:7683571-7683590 Msa0440380:intron 20.0%
!! GTCTATTAGAAACTTAATTA+AGG + chr3_3:7683765-7683784 None:intergenic 20.0%
!! AAAATAAGATAAAGGAAAAG+GGG + chr3_3:7684027-7684046 None:intergenic 20.0%
!! CAAAATAAGATAAAGGAAAA+GGG + chr3_3:7684028-7684047 None:intergenic 20.0%
!!! CTTTTCCTTTATCTTATTTT+GGG - chr3_3:7684027-7684046 Msa0440380:intron 20.0%
!!! TTTTCCTTTATCTTATTTTG+GGG - chr3_3:7684028-7684047 Msa0440380:intron 20.0%
!! AGCTATTACGTATAATATAA+AGG - chr3_3:7684308-7684327 Msa0440380:intron 20.0%
!! AGTATATATCTAAAAGAACA+AGG - chr3_3:7684388-7684407 Msa0440380:intron 20.0%
!! TCTTTGTTAATGATAACTAA+CGG - chr3_3:7684506-7684525 Msa0440380:intron 20.0%
!!! TTATGTATGATAGTTTTTAG+GGG + chr3_3:7684622-7684641 None:intergenic 20.0%
!!! TACTTTGATTTGTTAATCAA+TGG - chr3_3:7685325-7685344 Msa0440380:intron 20.0%
!! TAAATGGTAGTTAAATACTA+TGG + chr3_3:7685729-7685748 None:intergenic 20.0%
!! GTAGAAAATATTTGAATTAC+TGG + chr3_3:7685941-7685960 None:intergenic 20.0%
!!! TTATGTTTTATGAGATTCTA+TGG - chr3_3:7686430-7686449 Msa0440380:five_prime_UTR 20.0%
!!! ACAAGTATCAAATTTTGAAA+AGG + chr3_3:7686592-7686611 None:intergenic 20.0%
!!! AGTTAAAAGTATTGTACAAG+TGG - chr3_3:7682017-7682036 Msa0440380:three_prime_UTR 25.0%
!!! GTTAAAAGTATTGTACAAGT+GGG - chr3_3:7682018-7682037 Msa0440380:three_prime_UTR 25.0%
!!! TTAAAAGTATTGTACAAGTG+GGG - chr3_3:7682019-7682038 Msa0440380:three_prime_UTR 25.0%
! TAAGACAAAGTCAAAATCAA+TGG - chr3_3:7682664-7682683 Msa0440380:intron 25.0%
!! TGCATAATCAACAACATTTT+CGG + chr3_3:7682839-7682858 None:intergenic 25.0%
!! TGTTGTTGTTATTATTATCG+GGG + chr3_3:7682918-7682937 None:intergenic 25.0%
! TTGAGAAGAAGAAAATACTA+TGG + chr3_3:7682950-7682969 None:intergenic 25.0%
! AAAATGAAATAATGTGGTTG+TGG + chr3_3:7683134-7683153 None:intergenic 25.0%
! AATTATACCTTATCCATGTT+AGG + chr3_3:7683476-7683495 None:intergenic 25.0%
! AATAATAGGTAACGAAAGTT+AGG + chr3_3:7683522-7683541 None:intergenic 25.0%
! TGTAGTCAAAAATACTACTA+AGG - chr3_3:7683661-7683680 Msa0440380:intron 25.0%
! TACTACTAAGGATAAAAACT+AGG - chr3_3:7683673-7683692 Msa0440380:intron 25.0%
! ACTACTAAGGATAAAAACTA+GGG - chr3_3:7683674-7683693 Msa0440380:intron 25.0%
! GACATTCAATGAAAACTTAA+GGG + chr3_3:7683716-7683735 None:intergenic 25.0%
! TGACATTCAATGAAAACTTA+AGG + chr3_3:7683717-7683736 None:intergenic 25.0%
! AAACAGTGTTAAACAAAAAG+GGG + chr3_3:7683796-7683815 None:intergenic 25.0%
! CAAACAGTGTTAAACAAAAA+GGG + chr3_3:7683797-7683816 None:intergenic 25.0%
!!! AGTAGCTTTTTTTCTTTCAT+TGG + chr3_3:7683848-7683867 None:intergenic 25.0%
! CCAAAATAAGATAAAGGAAA+AGG + chr3_3:7684029-7684048 None:intergenic 25.0%
!!! CCTTTTCCTTTATCTTATTT+TGG - chr3_3:7684026-7684045 Msa0440380:intron 25.0%
! ATAAATTCCCAACTCAATAA+GGG + chr3_3:7684069-7684088 None:intergenic 25.0%
! AATAAATTCCCAACTCAATA+AGG + chr3_3:7684070-7684089 None:intergenic 25.0%
! TTTATTGTCAGTATTGTGTT+TGG - chr3_3:7684084-7684103 Msa0440380:intron 25.0%
! TTATTGTCAGTATTGTGTTT+GGG - chr3_3:7684085-7684104 Msa0440380:intron 25.0%
!!! ATTGCTTTGTTTAAAACTAG+AGG - chr3_3:7684548-7684567 Msa0440380:intron 25.0%
!!! TTGCTTTGTTTAAAACTAGA+GGG - chr3_3:7684549-7684568 Msa0440380:intron 25.0%
! TTTATGTATTTAAGGACTGA+TGG + chr3_3:7684698-7684717 None:intergenic 25.0%
!! ACAACTTTTGTTAGTGTTAT+TGG + chr3_3:7685676-7685695 None:intergenic 25.0%
!! CAAGCTACTTTAAGTTTAAA+TGG + chr3_3:7685745-7685764 None:intergenic 25.0%
! AAGTAGCTTGAAACATTATA+TGG - chr3_3:7685755-7685774 Msa0440380:CDS 25.0%
! TTAGTTCATAATTACAGAGT+AGG - chr3_3:7685886-7685905 Msa0440380:intron 25.0%
! GCATCTTCAATTGAATTTAT+AGG - chr3_3:7685974-7685993 Msa0440380:intron 25.0%
! AGTGTTTAACTGTGTATTAT+AGG - chr3_3:7686034-7686053 Msa0440380:CDS 25.0%
!!! TGTGAAGCTCTTTTTAATTT+GGG + chr3_3:7686219-7686238 None:intergenic 25.0%
!!! ATGTGAAGCTCTTTTTAATT+TGG + chr3_3:7686220-7686239 None:intergenic 25.0%
!!! GTTATTCTTTTAAAGTTGGA+AGG + chr3_3:7686501-7686520 None:intergenic 25.0%
!!! CTTCGTTATTCTTTTAAAGT+TGG + chr3_3:7686505-7686524 None:intergenic 25.0%
!! CAACTTTAAAAGAATAACGA+AGG - chr3_3:7686503-7686522 Msa0440380:five_prime_UTR 25.0%
! ATACTTGTATTTGAAAGTAG+AGG - chr3_3:7686604-7686623 Msa0440380:five_prime_UTR 25.0%
!!! TTTTTGGATTGTTTCTTGTT+TGG - chr3_3:7686642-7686661 Msa0440380:five_prime_UTR 25.0%
!!! TTTTGGATTGTTTCTTGTTT+GGG - chr3_3:7686643-7686662 Msa0440380:five_prime_UTR 25.0%
! CAATGAATAACTTATTCTCA+TGG - chr3_3:7686677-7686696 Msa0440380:five_prime_UTR 25.0%
!! GGCATGTTTTGAATAAAAAG+AGG - chr3_3:7681971-7681990 Msa0440380:three_prime_UTR 30.0%
TAGAAGAATAAGAAGCAAGT+TGG + chr3_3:7682130-7682149 None:intergenic 30.0%
ATGATGATTATGATTGAGAG+TGG + chr3_3:7682610-7682629 None:intergenic 30.0%
!! ATTTTTGATTGAATTGCAGC+TGG - chr3_3:7682727-7682746 Msa0440380:intron 30.0%
!! TTTTTGATTGAATTGCAGCT+GGG - chr3_3:7682728-7682747 Msa0440380:intron 30.0%
AAACAGAAGCAGAAAGAAAA+AGG + chr3_3:7683348-7683367 None:intergenic 30.0%
AAGGTAATGCACACATTAAT+TGG - chr3_3:7683590-7683609 Msa0440380:intron 30.0%
CTTGTAGTAATGAAGTAGTT+AGG - chr3_3:7683633-7683652 Msa0440380:intron 30.0%
AACAGTGTTAAACAAAAAGG+GGG + chr3_3:7683795-7683814 None:intergenic 30.0%
GCAAACAGTGTTAAACAAAA+AGG + chr3_3:7683798-7683817 None:intergenic 30.0%
!!! TCCTTTTTTTCGTCTATAAC+CGG - chr3_3:7683988-7684007 Msa0440380:intron 30.0%
AAGGGGATGAAATTAAATAC+CGG + chr3_3:7684010-7684029 None:intergenic 30.0%
AGAACCCCAAAATAAGATAA+AGG + chr3_3:7684035-7684054 None:intergenic 30.0%
TTTCAAATCCCTTATTGAGT+TGG - chr3_3:7684058-7684077 Msa0440380:intron 30.0%
TTCAAATCCCTTATTGAGTT+GGG - chr3_3:7684059-7684078 Msa0440380:intron 30.0%
! AAAACTATGGTTGTTTCAAG+TGG - chr3_3:7684131-7684150 Msa0440380:intron 30.0%
! AACTGTGAGACAATGATTTT+GGG + chr3_3:7684166-7684185 None:intergenic 30.0%
! ATAGCTTTACTTCATGTTGT+TGG + chr3_3:7684294-7684313 None:intergenic 30.0%
ATGATAATAGTAAATGAGCC+AGG - chr3_3:7684333-7684352 Msa0440380:intron 30.0%
!! TGCTTTGTTTAAAACTAGAG+GGG - chr3_3:7684550-7684569 Msa0440380:intron 30.0%
! ATGTTATTTAGTGAAACCTC+AGG - chr3_3:7684579-7684598 Msa0440380:intron 30.0%
! TGTTATTTAGTGAAACCTCA+GGG - chr3_3:7684580-7684599 Msa0440380:intron 30.0%
!!! GCTGTTTCTGGTTTTTTAAA+GGG + chr3_3:7684799-7684818 None:intergenic 30.0%
! CTTTAAAAAACCAGAAACAG+CGG - chr3_3:7684798-7684817 Msa0440380:intron 30.0%
GAAGCTCATTTACACTAAAA+TGG + chr3_3:7685502-7685521 None:intergenic 30.0%
TAGCAGATAATACAGAGAAT+GGG - chr3_3:7685583-7685602 Msa0440380:CDS 30.0%
AGTTGTAGAAATAGTTTCAG+TGG - chr3_3:7685690-7685709 Msa0440380:intron 30.0%
TAGAAATAGTTTCAGTGGAA+TGG - chr3_3:7685695-7685714 Msa0440380:CDS 30.0%
ATAATTACAGAGTAGGTAGA+TGG - chr3_3:7685893-7685912 Msa0440380:intron 30.0%
AATTACTGGTAATACTCTCA+TGG + chr3_3:7685927-7685946 None:intergenic 30.0%
! GTTGAGTTCTGTTGAATTTT+TGG - chr3_3:7686626-7686645 Msa0440380:five_prime_UTR 30.0%
GAGTAGTTAGCATACGAAAA+TGG - chr3_3:7681932-7681951 Msa0440380:three_prime_UTR 35.0%
! AAGAATAAGAAGCAAGTTGG+TGG + chr3_3:7682127-7682146 None:intergenic 35.0%
GAGACTAAGACAATTGAAGA+AGG + chr3_3:7682192-7682211 None:intergenic 35.0%
!! TTTTGATTGAATTGCAGCTG+GGG - chr3_3:7682729-7682748 Msa0440380:intron 35.0%
AAGTCTGAATTGAGTTTCAC+TGG - chr3_3:7682784-7682803 Msa0440380:intron 35.0%
AGTCTGAATTGAGTTTCACT+GGG - chr3_3:7682785-7682804 Msa0440380:intron 35.0%
TTTACAAGGGACAGAATCTT+GGG + chr3_3:7683244-7683263 None:intergenic 35.0%
! TTTTACAAGGGACAGAATCT+TGG + chr3_3:7683245-7683264 None:intergenic 35.0%
CTATTGCAATACATGTATGC+AGG - chr3_3:7683400-7683419 Msa0440380:intron 35.0%
GAGAGAAGAACTAGAATAAG+TGG - chr3_3:7683422-7683441 Msa0440380:intron 35.0%
GAAAGTTAGGAAGCAAAAGT+TGG + chr3_3:7683509-7683528 None:intergenic 35.0%
ACAGTGTTAAACAAAAAGGG+GGG + chr3_3:7683794-7683813 None:intergenic 35.0%
ACCGGTTATAGACGAAAAAA+AGG + chr3_3:7683992-7684011 None:intergenic 35.0%
GTATTGTGTTTGGGAAGATA+TGG - chr3_3:7684094-7684113 Msa0440380:intron 35.0%
! CAACTGTGAGACAATGATTT+TGG + chr3_3:7684167-7684186 None:intergenic 35.0%
AGAAAGAAGAATGCTAGACA+TGG - chr3_3:7684430-7684449 Msa0440380:intron 35.0%
!! ATGACATTTCCAGCTTGTTA+TGG + chr3_3:7684479-7684498 None:intergenic 35.0%
GTTATTTAGTGAAACCTCAG+GGG - chr3_3:7684581-7684600 Msa0440380:intron 35.0%
!!! CGCTGTTTCTGGTTTTTTAA+AGG + chr3_3:7684800-7684819 None:intergenic 35.0%
! GGTTTTCTTTCAGTTACACA+TGG + chr3_3:7684833-7684852 None:intergenic 35.0%
TGTGTAACTGAAAGAAAACC+TGG - chr3_3:7684833-7684852 Msa0440380:intron 35.0%
GTGTAACTGAAAGAAAACCT+GGG - chr3_3:7684834-7684853 Msa0440380:intron 35.0%
TAGAATCGTCTGATACTACT+CGG - chr3_3:7685212-7685231 Msa0440380:intron 35.0%
ACAATAATACTCTCAAGTCC+AGG + chr3_3:7685268-7685287 None:intergenic 35.0%
TCACAGTAAAACATACTCTC+CGG + chr3_3:7685374-7685393 None:intergenic 35.0%
GTAGCAGATAATACAGAGAA+TGG - chr3_3:7685582-7685601 Msa0440380:CDS 35.0%
ATTCGACTATACAAAGAGTC+AGG - chr3_3:7685845-7685864 Msa0440380:CDS 35.0%
AACAAGTTATTCAGACATGC+TGG - chr3_3:7686091-7686110 Msa0440380:CDS 35.0%
TTATTCAGACATGCTGGATT+TGG - chr3_3:7686097-7686116 Msa0440380:CDS 35.0%
ATTCTACTCAGTAGAAGCTA+CGG + chr3_3:7686174-7686193 None:intergenic 35.0%
!! CATAGAAGTCAAGGTTTTGA+TGG - chr3_3:7686460-7686479 Msa0440380:five_prime_UTR 35.0%
TGTATGTTGTAATCTACCTG+TGG - chr3_3:7686541-7686560 Msa0440380:five_prime_UTR 35.0%
CAGAAAAATAGAAGCGAGAA+CGG - chr3_3:7686703-7686722 Msa0440380:five_prime_UTR 35.0%
AGAAAAATAGAAGCGAGAAC+GGG - chr3_3:7686704-7686723 Msa0440380:five_prime_UTR 35.0%
CGAAAATGGAGATACGTTGA+AGG - chr3_3:7681946-7681965 Msa0440380:three_prime_UTR 40.0%
AAATGGAGATACGTTGAAGG+TGG - chr3_3:7681949-7681968 Msa0440380:three_prime_UTR 40.0%
AATGGAGATACGTTGAAGGT+GGG - chr3_3:7681950-7681969 Msa0440380:three_prime_UTR 40.0%
!! AAGAAGCAAGTTGGTGGTTT+GGG + chr3_3:7682121-7682140 None:intergenic 40.0%
!! TAAGAAGCAAGTTGGTGGTT+TGG + chr3_3:7682122-7682141 None:intergenic 40.0%
! TGGACGATACATGATGATGA+AGG + chr3_3:7682250-7682269 None:intergenic 40.0%
AAATAATGTTGTCCCGTTCC+AGG + chr3_3:7682426-7682445 None:intergenic 40.0%
TATGATTGAGAGTGGCTAGA+TGG + chr3_3:7682602-7682621 None:intergenic 40.0%
TTTGATTGAATTGCAGCTGG+GGG - chr3_3:7682730-7682749 Msa0440380:intron 40.0%
GTCTGAATTGAGTTTCACTG+GGG - chr3_3:7682786-7682805 Msa0440380:intron 40.0%
TCTGAATTGAGTTTCACTGG+GGG - chr3_3:7682787-7682806 Msa0440380:intron 40.0%
TGCATACTAGTACCAATACC+TGG - chr3_3:7682884-7682903 Msa0440380:intron 40.0%
GCATACTAGTACCAATACCT+GGG - chr3_3:7682885-7682904 Msa0440380:intron 40.0%
CATACTAGTACCAATACCTG+GGG - chr3_3:7682886-7682905 Msa0440380:intron 40.0%
CATTGAGGCAATGTAGAAGA+AGG + chr3_3:7683063-7683082 None:intergenic 40.0%
GTGGGAGACTATACTGAATT+AGG + chr3_3:7683182-7683201 None:intergenic 40.0%
GGGGAATATTATGCATAAGC+TGG + chr3_3:7683224-7683243 None:intergenic 40.0%
TTACAAGGGACAGAATCTTG+GGG + chr3_3:7683243-7683262 None:intergenic 40.0%
CCTTATCCATGTTAGGTACA+AGG + chr3_3:7683469-7683488 None:intergenic 40.0%
CCTTGTACCTAACATGGATA+AGG - chr3_3:7683466-7683485 Msa0440380:intron 40.0%
!! GAAGCAAAAGTTGGTAGCAT+GGG + chr3_3:7683500-7683519 None:intergenic 40.0%
CAGTGTTAAACAAAAAGGGG+GGG + chr3_3:7683793-7683812 None:intergenic 40.0%
TTTGCCCACGTTAAGTTAAG+AGG - chr3_3:7683813-7683832 Msa0440380:intron 40.0%
GTAGCCTCTTAACTTAACGT+GGG + chr3_3:7683820-7683839 None:intergenic 40.0%
AGTAGCCTCTTAACTTAACG+TGG + chr3_3:7683821-7683840 None:intergenic 40.0%
ACAAATGAACCCCTCAATGA+AGG - chr3_3:7683874-7683893 Msa0440380:intron 40.0%
GTTCAACAACCTTCATTGAG+GGG + chr3_3:7683886-7683905 None:intergenic 40.0%
GGTTCAACAACCTTCATTGA+GGG + chr3_3:7683887-7683906 None:intergenic 40.0%
TGGTTCAACAACCTTCATTG+AGG + chr3_3:7683888-7683907 None:intergenic 40.0%
GTTGTTGAACCACTCAGTAA+AGG - chr3_3:7683896-7683915 Msa0440380:intron 40.0%
GTTGTTCTCCATAGAGAAGA+AGG - chr3_3:7683918-7683937 Msa0440380:intron 40.0%
CTTCTTGTCCTTCTTCTCTA+TGG + chr3_3:7683929-7683948 None:intergenic 40.0%
CATAGAGAAGAAGGACAAGA+AGG - chr3_3:7683927-7683946 Msa0440380:intron 40.0%
! TTGACCACTGTAGTTTGTCT+CGG - chr3_3:7684213-7684232 Msa0440380:intron 40.0%
AGAAGAATGCTAGACATGGA+TGG - chr3_3:7684434-7684453 Msa0440380:intron 40.0%
ATGCTAGACATGGATGGAAT+TGG - chr3_3:7684440-7684459 Msa0440380:intron 40.0%
ACATGGATGGAATTGGCATA+AGG - chr3_3:7684447-7684466 Msa0440380:intron 40.0%
! TAACTAACGGTGTTAACCCA+AGG - chr3_3:7684519-7684538 Msa0440380:intron 40.0%
! AACTAACGGTGTTAACCCAA+GGG - chr3_3:7684520-7684539 Msa0440380:intron 40.0%
AACTGAAAGAAAACCTGGGT+AGG - chr3_3:7684838-7684857 Msa0440380:intron 40.0%
TTTGAGAACCGTAGTTCAGT+TGG - chr3_3:7684900-7684919 Msa0440380:intron 40.0%
ACACTTCCTTTGCTGATACA+CGG + chr3_3:7685014-7685033 None:intergenic 40.0%
! CGATCATGACTACATTGGTT+AGG - chr3_3:7685242-7685261 Msa0440380:intron 40.0%
GGTGAATTGTTTCCCTTTAG+AGG - chr3_3:7685346-7685365 Msa0440380:CDS 40.0%
GTAACTCAAGTCACTCTCTT+TGG + chr3_3:7685426-7685445 None:intergenic 40.0%
CATCTATGTTCAAAGCAAGC+AGG + chr3_3:7685459-7685478 None:intergenic 40.0%
TAAGCTTCTACCGTCAACTT+TGG - chr3_3:7685550-7685569 Msa0440380:CDS 40.0%
TTGGCGGTTCAACATATCAA+AGG - chr3_3:7686116-7686135 Msa0440380:CDS 40.0%
AGGTCTTCAAACTCAAGTTC+AGG - chr3_3:7686136-7686155 Msa0440380:CDS 40.0%
!! AACGGGACTAGTTAGAAATC+TGG - chr3_3:7686721-7686740 Msa0440380:five_prime_UTR 40.0%
AAAGAAGGCGGCAATGGTAT+GGG - chr3_3:7681887-7681906 Msa0440380:three_prime_UTR 45.0%
TATTGTACAAGTGGGGTGTG+AGG - chr3_3:7682026-7682045 Msa0440380:three_prime_UTR 45.0%
ACAGAGCTCCATCAGTCAAA+CGG - chr3_3:7682314-7682333 Msa0440380:intron 45.0%
TGATCCTCCTACTCCTATGA+TGG + chr3_3:7682394-7682413 None:intergenic 45.0%
! CTCTGCTGTTGTTGTTGTTG+TGG + chr3_3:7682498-7682517 None:intergenic 45.0%
CAGCAGAGATCTTCTTACGA+AGG - chr3_3:7682510-7682529 Msa0440380:CDS 45.0%
TCTTCTTACGAAGGTCAAGC+TGG - chr3_3:7682519-7682538 Msa0440380:CDS 45.0%
TTGATTGAATTGCAGCTGGG+GGG - chr3_3:7682731-7682750 Msa0440380:intron 45.0%
AAGAAGGTCGGGATCATCAT+TGG + chr3_3:7683047-7683066 None:intergenic 45.0%
AGGCAATGTAGAAGAAGGTC+GGG + chr3_3:7683058-7683077 None:intergenic 45.0%
GAGGCAATGTAGAAGAAGGT+CGG + chr3_3:7683059-7683078 None:intergenic 45.0%
AGATGGTACCTGAGTTTCGA+GGG + chr3_3:7683086-7683105 None:intergenic 45.0%
TAGTCTCCCACAAACTTCTC+TGG - chr3_3:7683191-7683210 Msa0440380:intron 45.0%
CCATCTCCAGAGAAGTTTGT+GGG + chr3_3:7683200-7683219 None:intergenic 45.0%
TCCATCTCCAGAGAAGTTTG+TGG + chr3_3:7683201-7683220 None:intergenic 45.0%
! GCTTGGCACGGATTTTACAA+GGG + chr3_3:7683257-7683276 None:intergenic 45.0%
ATCCTCGTAGCATTGCTGAA+CGG - chr3_3:7683292-7683311 Msa0440380:intron 45.0%
! TGGCAAGTTGAAGAAGTTGC+AGG - chr3_3:7683442-7683461 Msa0440380:intron 45.0%
!! GGAAGCAAAAGTTGGTAGCA+TGG + chr3_3:7683501-7683520 None:intergenic 45.0%
! AAGGGAGAGTGTGTTTGAGA+GGG + chr3_3:7683746-7683765 None:intergenic 45.0%
! TAAGGGAGAGTGTGTTTGAG+AGG + chr3_3:7683747-7683766 None:intergenic 45.0%
GGAGAACAACCTTTACTGAG+TGG + chr3_3:7683908-7683927 None:intergenic 45.0%
ATTGCCGAGACAAACTACAG+TGG + chr3_3:7684220-7684239 None:intergenic 45.0%
AAATGAGCCAGGAAAGTTGC+AGG - chr3_3:7684344-7684363 Msa0440380:intron 45.0%
ACTATAGCCTGCAACTTTCC+TGG + chr3_3:7684354-7684373 None:intergenic 45.0%
AGGAGAATGCCATAACAAGC+TGG - chr3_3:7684467-7684486 Msa0440380:intron 45.0%
ACAAAGCAATCACCTCCCTT+GGG + chr3_3:7684538-7684557 None:intergenic 45.0%
AACAAAGCAATCACCTCCCT+TGG + chr3_3:7684539-7684558 None:intergenic 45.0%
ATTTAGTGAAACCTCAGGGG+AGG - chr3_3:7684584-7684603 Msa0440380:intron 45.0%
ACAGAGGAAGGCAGAAATGA+AGG - chr3_3:7684761-7684780 Msa0440380:intron 45.0%
AACCAGAAACAGCGGAAGTA+AGG - chr3_3:7684806-7684825 Msa0440380:intron 45.0%
AACGACATCACAGAGAAGAG+AGG - chr3_3:7684939-7684958 Msa0440380:intron 45.0%
ACTAGACCGTGAGAGAGTAA+GGG - chr3_3:7684964-7684983 Msa0440380:intron 45.0%
TAGTGTCCGTGTATCAGCAA+AGG - chr3_3:7685005-7685024 Msa0440380:intron 45.0%
GTACCAGACCAGTTTCAGAA+AGG - chr3_3:7685058-7685077 Msa0440380:intron 45.0%
!! AGACCTTTCTGAAACTGGTC+TGG + chr3_3:7685064-7685083 None:intergenic 45.0%
!! GCAACAGACCTTTCTGAAAC+TGG + chr3_3:7685069-7685088 None:intergenic 45.0%
AAGGTCTGTTGCGAAACAGA+TGG - chr3_3:7685077-7685096 Msa0440380:intron 45.0%
! CGAGTTTGAAGCAGGACTAT+AGG + chr3_3:7685117-7685136 None:intergenic 45.0%
TCAGACGATTCTACGATCCA+CGG + chr3_3:7685205-7685224 None:intergenic 45.0%
AATCGTCTGATACTACTCGG+CGG - chr3_3:7685215-7685234 Msa0440380:intron 45.0%
GTTCGCGATCATGACTACAT+TGG - chr3_3:7685237-7685256 Msa0440380:intron 45.0%
! ATGACTACATTGGTTAGGCC+TGG - chr3_3:7685247-7685266 Msa0440380:intron 45.0%
! TTGTTTCCCTTTAGAGGAGC+CGG - chr3_3:7685352-7685371 Msa0440380:CDS 45.0%
CTTCTACCGTCAACTTTGGA+TGG - chr3_3:7685554-7685573 Msa0440380:CDS 45.0%
CTGCTACCATCCAAAGTTGA+CGG + chr3_3:7685563-7685582 None:intergenic 45.0%
TTCAGACATGCTGGATTTGG+CGG - chr3_3:7686100-7686119 Msa0440380:CDS 45.0%
! TGTACTTTGTTTGCATCCGC+AGG + chr3_3:7686402-7686421 None:intergenic 45.0%
TTCTAGACTACGTCTACCAC+AGG + chr3_3:7686560-7686579 None:intergenic 45.0%
!!! ATTATTATTATTATTAGTTT+GGG + chr3_3:7682974-7682993 None:intergenic 5.0%
!! TATTATTATTATTATTAGTT+TGG + chr3_3:7682975-7682994 None:intergenic 5.0%
GAAAGAAGGCGGCAATGGTA+TGG - chr3_3:7681886-7681905 Msa0440380:three_prime_UTR 50.0%
!! AGCAAGTTGGTGGTTTGGGT+GGG + chr3_3:7682117-7682136 None:intergenic 50.0%
!! AAGCAAGTTGGTGGTTTGGG+TGG + chr3_3:7682118-7682137 None:intergenic 50.0%
TCGATCAATCTGTGTGCGAG+CGG + chr3_3:7682214-7682233 None:intergenic 50.0%
GTATCGTCCACCTTCCTCAT+CGG - chr3_3:7682260-7682279 Msa0440380:intron 50.0%
TATCGTCCACCTTCCTCATC+GGG - chr3_3:7682261-7682280 Msa0440380:intron 50.0%
GAAGAAGAACCCGATGAGGA+AGG + chr3_3:7682273-7682292 None:intergenic 50.0%
GGAAGAAGAAGAACCCGATG+AGG + chr3_3:7682277-7682296 None:intergenic 50.0%
CTGTTGTTGCTGAGACGAAG+AGG + chr3_3:7682298-7682317 None:intergenic 50.0%
CAGAGCTCCATCAGTCAAAC+GGG - chr3_3:7682315-7682334 Msa0440380:intron 50.0%
TGTGAGACCCGTTTGACTGA+TGG + chr3_3:7682325-7682344 None:intergenic 50.0%
TCAGTCAAACGGGTCTCACA+AGG - chr3_3:7682325-7682344 Msa0440380:intron 50.0%
CAAACGGGTCTCACAAGGTA+TGG - chr3_3:7682330-7682349 Msa0440380:intron 50.0%
ACCACTGTGGATGCCATCAT+AGG - chr3_3:7682378-7682397 Msa0440380:intron 50.0%
TCCTATGATGGCATCCACAG+TGG + chr3_3:7682382-7682401 None:intergenic 50.0%
GTGGATGCCATCATAGGAGT+AGG - chr3_3:7682384-7682403 Msa0440380:intron 50.0%
GATGCCATCATAGGAGTAGG+AGG - chr3_3:7682387-7682406 Msa0440380:intron 50.0%
ATCACGCCTTCTTCCTGGAA+CGG - chr3_3:7682410-7682429 Msa0440380:intron 50.0%
TCTTACGAAGGTCAAGCTGG+TGG - chr3_3:7682522-7682541 Msa0440380:CDS 50.0%
! GCTTTTCTGACGGAGCAAAG+CGG + chr3_3:7682559-7682578 None:intergenic 50.0%
GGCTAGATGGTTGAGAAAGC+CGG + chr3_3:7682589-7682608 None:intergenic 50.0%
GAATTGAGTTTCACTGGGGG+AGG - chr3_3:7682790-7682809 Msa0440380:intron 50.0%
GATTATGCATCAGCAGCAGC+TGG - chr3_3:7682850-7682869 Msa0440380:intron 50.0%
ACTAGTACCAATACCTGGGG+TGG - chr3_3:7682889-7682908 Msa0440380:intron 50.0%
GTCGGGATCATCATTGGTGT+CGG + chr3_3:7683041-7683060 None:intergenic 50.0%
GAGATGGTACCTGAGTTTCG+AGG + chr3_3:7683087-7683106 None:intergenic 50.0%
! CCCACAAACTTCTCTGGAGA+TGG - chr3_3:7683197-7683216 Msa0440380:intron 50.0%
! CGCTTGGCACGGATTTTACA+AGG + chr3_3:7683258-7683277 None:intergenic 50.0%
TGTAAAATCCGTGCCAAGCG+TGG - chr3_3:7683258-7683277 Msa0440380:intron 50.0%
AGCAATGCTACGAGGATGAG+TGG + chr3_3:7683289-7683308 None:intergenic 50.0%
TCCTCGTAGCATTGCTGAAC+GGG - chr3_3:7683293-7683312 Msa0440380:intron 50.0%
GCAGGACCTTGTACCTAACA+TGG - chr3_3:7683460-7683479 Msa0440380:intron 50.0%
! TAACGGTGTTAACCCAAGGG+AGG - chr3_3:7684523-7684542 Msa0440380:intron 50.0%
AATTGCACTAACCTCCCCTG+AGG + chr3_3:7684598-7684617 None:intergenic 50.0%
TTCACCCACAGTTCAGACAG+AGG - chr3_3:7684745-7684764 Msa0440380:intron 50.0%
CCTTCCTCTGTCTGAACTGT+GGG + chr3_3:7684752-7684771 None:intergenic 50.0%
! GACCTTACTTCCGCTGTTTC+TGG + chr3_3:7684811-7684830 None:intergenic 50.0%
! TCAACTTTTGCTGCCTACCC+AGG + chr3_3:7684854-7684873 None:intergenic 50.0%
AGTTGAGAACATGTCGCACG+CGG - chr3_3:7684868-7684887 Msa0440380:intron 50.0%
GAGAACCGTAGTTCAGTTGG+CGG - chr3_3:7684903-7684922 Msa0440380:intron 50.0%
GACTAGACCGTGAGAGAGTA+AGG - chr3_3:7684963-7684982 Msa0440380:intron 50.0%
CTAGACCGTGAGAGAGTAAG+GGG - chr3_3:7684965-7684984 Msa0440380:intron 50.0%
GTTTGCCCCTTACTCTCTCA+CGG + chr3_3:7684973-7684992 None:intergenic 50.0%
! TGAACTCGCGAGTTTGAAGC+AGG + chr3_3:7685125-7685144 None:intergenic 50.0%
CAGCAATCCTGGCTGTATGA+CGG - chr3_3:7685166-7685185 Msa0440380:CDS 50.0%
TGTATGACGGCAAGGAACCA+TGG - chr3_3:7685179-7685198 Msa0440380:CDS 50.0%
TACTCTCCGGCTCCTCTAAA+GGG + chr3_3:7685361-7685380 None:intergenic 50.0%
ATACTCTCCGGCTCCTCTAA+AGG + chr3_3:7685362-7685381 None:intergenic 50.0%
GACCTTGAGAATTGCACCTG+CGG - chr3_3:7686383-7686402 Msa0440380:exon 50.0%
ATCCGCAGGTGCAATTCTCA+AGG + chr3_3:7686388-7686407 None:intergenic 50.0%
GGCACTGTGCATAGAAGTCA+AGG - chr3_3:7686451-7686470 Msa0440380:five_prime_UTR 50.0%
!! GCAAGTTGGTGGTTTGGGTG+GGG + chr3_3:7682116-7682135 None:intergenic 55.0%
GAAGAACCCGATGAGGAAGG+TGG + chr3_3:7682270-7682289 None:intergenic 55.0%
! GTGGTGTTGAGGAGAGAGCT+AGG + chr3_3:7682363-7682382 None:intergenic 55.0%
CTCTCTCCTCAACACCACTG+TGG - chr3_3:7682365-7682384 Msa0440380:intron 55.0%
! TGGCATCCACAGTGGTGTTG+AGG + chr3_3:7682374-7682393 None:intergenic 55.0%
TCACGCCTTCTTCCTGGAAC+GGG - chr3_3:7682411-7682430 Msa0440380:intron 55.0%
GTTGTCCCGTTCCAGGAAGA+AGG + chr3_3:7682419-7682438 None:intergenic 55.0%
!! GGTCAAGCTGGTGGCTTTGA+TGG - chr3_3:7682531-7682550 Msa0440380:CDS 55.0%
! CGGCTGGAGAGCTTTTCTGA+CGG + chr3_3:7682569-7682588 None:intergenic 55.0%
CGTCAGAAAAGCTCTCCAGC+CGG - chr3_3:7682567-7682586 Msa0440380:intron 55.0%
AGATGGTTGAGAAAGCCGGC+TGG + chr3_3:7682585-7682604 None:intergenic 55.0%
TGGGGGGTTCACAATCACGA+GGG - chr3_3:7682747-7682766 Msa0440380:intron 55.0%
GCATCAGCAGCAGCTGGAAA+TGG - chr3_3:7682856-7682875 Msa0440380:intron 55.0%
AGTACCAATACCTGGGGTGG+AGG - chr3_3:7682892-7682911 Msa0440380:intron 55.0%
!! CCTGAGTTTCGAGGGCATTG+AGG + chr3_3:7683078-7683097 None:intergenic 55.0%
CCTCAATGCCCTCGAAACTC+AGG - chr3_3:7683075-7683094 Msa0440380:intron 55.0%
ACCCGTTCAGCAATGCTACG+AGG + chr3_3:7683297-7683316 None:intergenic 55.0%
CCCACAGTTCAGACAGAGGA+AGG - chr3_3:7684749-7684768 Msa0440380:intron 55.0%
GCCTTCCTCTGTCTGAACTG+TGG + chr3_3:7684753-7684772 None:intergenic 55.0%
AACCGTAGTTCAGTTGGCGG+TGG - chr3_3:7684906-7684925 Msa0440380:intron 55.0%
! GATTGCTGGAGGTGTGTCCA+CGG + chr3_3:7685154-7685173 None:intergenic 55.0%
CATACAGCCAGGATTGCTGG+AGG + chr3_3:7685165-7685184 None:intergenic 55.0%
CGTCATACAGCCAGGATTGC+TGG + chr3_3:7685168-7685187 None:intergenic 55.0%
ATCCTGGCTGTATGACGGCA+AGG - chr3_3:7685171-7685190 Msa0440380:CDS 55.0%
TTCCTTGCCGTCATACAGCC+AGG + chr3_3:7685176-7685195 None:intergenic 55.0%
GATTCTACGATCCACGGCCA+TGG + chr3_3:7685199-7685218 None:intergenic 55.0%
! GGTGGTTTGGGTGGGGTTGA+GGG + chr3_3:7682109-7682128 None:intergenic 60.0%
! TGGTGGTTTGGGTGGGGTTG+AGG + chr3_3:7682110-7682129 None:intergenic 60.0%
GGAGGATCACGCCTTCTTCC+TGG - chr3_3:7682405-7682424 Msa0440380:intron 60.0%
CTGGGGGGTTCACAATCACG+AGG - chr3_3:7682746-7682765 Msa0440380:intron 60.0%
GGGGGGTTCACAATCACGAG+GGG - chr3_3:7682748-7682767 Msa0440380:intron 60.0%
ATGAGTGGCGCATCCACGCT+TGG + chr3_3:7683274-7683293 None:intergenic 60.0%
TGAGAACATGTCGCACGCGG+CGG - chr3_3:7684871-7684890 Msa0440380:intron 60.0%
CGCCACCGCCAACTGAACTA+CGG + chr3_3:7684911-7684930 None:intergenic 60.0%
GGACACACCTCCAGCAATCC+TGG - chr3_3:7685155-7685174 Msa0440380:intron 60.0%
CTGCTGCTGCTGCTGCTGCT+GGG + chr3_3:7682463-7682482 None:intergenic 65.0%
ATTATCGGGGCCTCCACCCC+AGG + chr3_3:7682905-7682924 None:intergenic 65.0%
TGGCGCATCCACGCTTGGCA+CGG + chr3_3:7683269-7683288 None:intergenic 65.0%
GTTCAGTTGGCGGTGGCGCA+AGG - chr3_3:7684913-7684932 Msa0440380:intron 65.0%
TCGCGAGTTCAAACCCGCCG+TGG - chr3_3:7685134-7685153 Msa0440380:intron 65.0%
! TGCTGGAGGTGTGTCCACGG+CGG + chr3_3:7685151-7685170 None:intergenic 65.0%
ACGGCAAGGAACCATGGCCG+TGG - chr3_3:7685185-7685204 Msa0440380:CDS 65.0%
GCTGCTGCTGCTGCTGCTGC+TGG + chr3_3:7682464-7682483 None:intergenic 70.0%
GGGGCCTCCACCCCAGGTAT+TGG + chr3_3:7682899-7682918 None:intergenic 70.0%
CAGTTGGCGGTGGCGCAAGG+AGG - chr3_3:7684916-7684935 Msa0440380:intron 70.0%
! GCTGGAGGTGTGTCCACGGC+GGG + chr3_3:7685150-7685169 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 7681882 7686762 7681882 ID=Msa0440380;Name=Msa0440380
chr3_3 mRNA 7681882 7686762 7681882 ID=Msa0440380-mRNA-1;Parent=Msa0440380;Name=Msa0440380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=376|0.83|0.71|1|0.83|1|7|338|327
chr3_3 exon 7681882 7682273 7681882 ID=Msa0440380-mRNA-1:exon:1566;Parent=Msa0440380-mRNA-1
chr3_3 exon 7682487 7682555 7682487 ID=Msa0440380-mRNA-1:exon:1565;Parent=Msa0440380-mRNA-1
chr3_3 exon 7685157 7685222 7685157 ID=Msa0440380-mRNA-1:exon:1564;Parent=Msa0440380-mRNA-1
chr3_3 exon 7685330 7685455 7685330 ID=Msa0440380-mRNA-1:exon:1563;Parent=Msa0440380-mRNA-1
chr3_3 exon 7685548 7685622 7685548 ID=Msa0440380-mRNA-1:exon:1562;Parent=Msa0440380-mRNA-1
chr3_3 exon 7685693 7685898 7685693 ID=Msa0440380-mRNA-1:exon:1561;Parent=Msa0440380-mRNA-1
chr3_3 exon 7685999 7686762 7685999 ID=Msa0440380-mRNA-1:exon:1560;Parent=Msa0440380-mRNA-1
chr3_3 five_prime_UTR 7686387 7686762 7686387 ID=Msa0440380-mRNA-1:five_prime_utr;Parent=Msa0440380-mRNA-1
chr3_3 CDS 7685999 7686386 7685999 ID=Msa0440380-mRNA-1:cds;Parent=Msa0440380-mRNA-1
chr3_3 CDS 7685693 7685898 7685693 ID=Msa0440380-mRNA-1:cds;Parent=Msa0440380-mRNA-1
chr3_3 CDS 7685548 7685622 7685548 ID=Msa0440380-mRNA-1:cds;Parent=Msa0440380-mRNA-1
chr3_3 CDS 7685330 7685455 7685330 ID=Msa0440380-mRNA-1:cds;Parent=Msa0440380-mRNA-1
chr3_3 CDS 7685157 7685222 7685157 ID=Msa0440380-mRNA-1:cds;Parent=Msa0440380-mRNA-1
chr3_3 CDS 7682487 7682555 7682487 ID=Msa0440380-mRNA-1:cds;Parent=Msa0440380-mRNA-1
chr3_3 CDS 7682220 7682273 7682220 ID=Msa0440380-mRNA-1:cds;Parent=Msa0440380-mRNA-1
chr3_3 three_prime_UTR 7681882 7682219 7681882 ID=Msa0440380-mRNA-1:three_prime_utr;Parent=Msa0440380-mRNA-1
Gene Sequence

>Msa0440380

ATGTATCGTCCACCTTCCTCATCGGGTTCTTCTTCTTCCTCTTCGTCTCAGCAACAACAGAGCTCCATCAGTCAAACGGGTCTCACAAGGTATGGTTCTGCACCTAGCTCTCTCCTCAACACCACTGTGGATGCCATCATAGGAGTAGGAGGATCACGCCTTCTTCCTGGAACGGGACAACATTATTTCTCTGATGACTCTACCCAGCAGCAGCAGCAGCAGCAGCAGCAGCACACACCACAACAACAACAACAGCAGAGATCTTCTTACGAAGGTCAAGCTGGTGGCTTTGATGGATCCGCTTTGCTCCGTCAGAAAAGCTCTCCAGCCGGCTTTCTCAACCATCTAGCCACTCTCAATCATAATCATCATAACAATAACAATAACGCTGGGGGGTTCACAATCACGAGGGGCAATTCAAGATTGAAGTCTGAATTGAGTTTCACTGGGGGAGGACAAGAATGTCTTTCTCGAATATCCGAAAATGTTGTTGATTATGCATCAGCAGCAGCTGGAAATGGATCATTGCATACTAGTACCAATACCTGGGGTGGAGGCCCCGATAATAATAACAACAACAACTCAAATTCCATAAAGCGTTCTAGTAGAACCGACACCAATGATGATCCCGACCTTCTTCTACATTGCCTCAATGCCCTCGAAACTCAGTATAGTCTCCCACAAACTTCTCTGGAGATGGACCAGCTTATGCATAATATTCCCCAAGATTCTGTCCCTTGTAAAATCCGTGCCAAGCGTGGATGCGCCACTCATCCTCGTAGCATTGCTGAACGGGAGAGAAGAACTAGAATAAGTGGCAAGTTGAAGAAGTTGCAGGACCTTGTACCTAACATGGATAAGCAAACAAGTTATTCAGACATGCTGGATTTGGCGGTTCAACATATCAAAGGTCTTCAAACTCAAGTTCAGAAGCTTCACGAAGACCTTGAGAATTGCACCTGCGGATGCAAACAAAGTACATAA
Protein sequence

>Msa0440380

MYRPPSSSGSSSSSSSQQQQSSISQTGLTRYGSAPSSLLNTTVDAIIGVGGSRLLPGTGQHYFSDDSTQQQQQQQQQHTPQQQQQQRSSYEGQAGGFDGSALLRQKSSPAGFLNHLATLNHNHHNNNNNAGGFTITRGNSRLKSELSFTGGGQECLSRISENVVDYASAAAGNGSLHTSTNTWGGGPDNNNNNNSNSIKRSSRTDTNDDPDLLLHCLNALETQYSLPQTSLEMDQLMHNIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLENCTCGCKQST*