AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1458530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458530 MtrunA17_Chr1g0213791 89.773 352 16 7 1 341 1 343 0.0 504
Msa1458530 MtrunA17_Chr1g0174271 42.023 257 120 7 96 335 126 370 1.45e-41 149
Msa1458530 MtrunA17_Chr4g0032951 38.783 263 129 7 97 339 181 431 1.19e-37 139
Msa1458530 MtrunA17_Chr8g0351881 33.594 384 167 15 16 335 29 388 4.28e-37 137
Msa1458530 MtrunA17_Chr2g0329041 60.526 114 39 3 229 339 297 407 1.46e-34 130
Msa1458530 MtrunA17_Chr4g0014771 58.947 95 39 0 245 339 100 194 7.11e-34 123
Msa1458530 MtrunA17_Chr3g0087771 38.672 256 115 10 97 336 166 395 1.38e-32 125
Msa1458530 MtrunA17_Chr7g0258181 31.579 323 158 10 69 339 8 319 2.76e-26 106
Msa1458530 MtrunA17_Chr4g0074161 53.846 65 29 1 262 326 205 268 5.69e-14 72.4
Msa1458530 MtrunA17_Chr1g0190731 50.769 65 31 1 262 326 192 255 3.42e-12 66.6
Msa1458530 MtrunA17_Chr3g0131771 50.000 64 32 0 263 326 147 210 6.87e-12 65.5
Msa1458530 MtrunA17_Chr8g0339091 47.059 68 36 0 263 330 291 358 1.55e-11 65.1
Msa1458530 MtrunA17_Chr3g0144641 47.059 68 36 0 263 330 191 258 1.90e-11 64.7
Msa1458530 MtrunA17_Chr1g0152651 50.000 68 33 1 262 329 273 339 2.14e-11 64.3
Msa1458530 MtrunA17_Chr5g0393721 50.000 68 33 1 262 329 223 289 2.25e-11 63.9
Msa1458530 MtrunA17_Chr8g0363921 46.377 69 37 0 263 331 151 219 2.44e-11 63.5
Msa1458530 MtrunA17_Chr8g0365941 47.059 68 36 0 263 330 305 372 2.87e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458530 AT1G05805.1 42.935 368 125 12 27 339 22 359 1.22e-69 222
Msa1458530 AT2G43140.2 49.265 272 79 11 93 339 71 308 1.14e-62 202
Msa1458530 AT2G43140.1 53.991 213 64 7 135 339 25 211 2.35e-59 190
Msa1458530 AT1G51140.1 61.765 102 35 1 234 335 279 376 4.14e-36 134
Msa1458530 AT1G35460.1 61.290 93 36 0 247 339 165 257 6.21e-36 131
Msa1458530 AT2G42280.1 71.429 84 24 0 256 339 272 355 1.05e-34 130
Msa1458530 AT2G42280.3 79.710 69 14 0 256 324 272 340 5.30e-31 120
Msa1458530 AT1G35460.2 57.500 80 26 2 234 305 144 223 2.41e-23 97.1
Msa1458530 AT2G24260.2 55.385 65 28 1 262 326 34 97 6.90e-14 70.9
Msa1458530 AT2G24260.1 55.385 65 28 1 262 326 137 200 1.17e-13 71.6
Msa1458530 AT5G58010.1 50.769 65 31 1 262 326 98 161 2.06e-13 70.1
Msa1458530 AT4G30980.1 53.846 65 29 1 262 326 129 192 2.22e-13 70.5
Msa1458530 AT4G30980.2 53.846 65 29 1 262 326 177 240 3.04e-13 70.5
Msa1458530 AT1G25330.1 45.833 72 37 1 255 326 98 167 2.42e-12 66.2
Msa1458530 AT4G34530.1 50.000 64 32 0 263 326 172 235 3.77e-12 67.0
Msa1458530 AT5G50915.1 44.737 76 40 1 255 330 130 203 7.03e-12 65.5
Msa1458530 AT5G50915.2 44.737 76 40 1 255 330 130 203 7.03e-12 65.5
Msa1458530 AT5G50915.3 44.737 76 40 1 255 330 130 203 8.01e-12 65.1
Msa1458530 AT5G50915.4 44.737 76 40 1 255 330 130 203 8.01e-12 65.1
Msa1458530 AT1G68920.3 44.737 76 41 1 255 330 295 369 1.28e-11 65.9
Msa1458530 AT1G68920.1 44.737 76 41 1 255 330 296 370 1.34e-11 65.9
Msa1458530 AT1G68920.4 44.737 76 41 1 255 330 296 370 1.34e-11 65.9
Msa1458530 AT1G68920.2 44.737 76 41 1 255 330 296 370 1.34e-11 65.9
Msa1458530 AT1G26260.5 45.333 75 38 1 255 326 190 264 1.50e-11 65.5
Msa1458530 AT1G26260.4 45.333 75 38 1 255 326 212 286 1.58e-11 65.5
Msa1458530 AT1G26260.1 45.333 75 38 1 255 326 212 286 1.58e-11 65.5
Msa1458530 AT1G26260.6 45.333 75 38 1 255 326 212 286 1.58e-11 65.5
Msa1458530 AT1G26260.2 45.333 75 38 1 255 326 212 286 1.58e-11 65.5
Msa1458530 AT1G26260.3 48.438 64 33 0 263 326 172 235 1.81e-11 64.7
Msa1458530 AT4G36540.1 48.438 64 33 0 263 326 141 204 5.11e-11 63.2
Msa1458530 AT4G36540.2 48.438 64 33 0 263 326 141 204 5.18e-11 63.2
Msa1458530 AT5G48560.2 43.421 76 41 1 255 330 295 368 5.79e-11 63.9
Msa1458530 AT5G48560.1 43.421 76 41 1 255 330 295 368 5.97e-11 63.9

Find 125 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGCTGTTGCTGCTGCTGC+TGG 0.178303 tig0039663:+15429 Msa1458530:intergenic
GTTGTTGTTGTTATTATTAT+CGG 0.271568 tig0039663:+14988 Msa1458530:intergenic
AAGAAGCAAGTTGGTGGTTT+GGG 0.287639 tig0039663:+15772 Msa1458530:intergenic
CAAGTTGGTGGTTTGGGTGG+GGG 0.287729 tig0039663:+15778 Msa1458530:intergenic
CTGCTGTTGCTGCTGCTGCT+GGG 0.303616 tig0039663:+15430 Msa1458530:intergenic
GCAAGTTGGTGGTTTGGGTG+GGG 0.319086 tig0039663:+15777 Msa1458530:intergenic
TTATTCAGACATGCTGGATT+TGG 0.325679 tig0039663:-11829 Msa1458530:CDS
GGAGGATCACGCCTTCTTCC+TGG 0.332014 tig0039663:-15485 Msa1458530:CDS
AACAAACAAGAAAGATATAA+TGG 0.360162 tig0039663:+15823 Msa1458530:intergenic
TCCTCGTAGCATTGCTGAAC+GGG 0.362115 tig0039663:-14616 Msa1458530:intron
GGTCAAGCTGGTGGCTTTGA+TGG 0.364612 tig0039663:-15368 Msa1458530:CDS
TTGTTGTTGTTATTATTATC+GGG 0.382053 tig0039663:+14989 Msa1458530:intergenic
TTTACAAGGGACAGAATCTT+GGG 0.382108 tig0039663:+14668 Msa1458530:intergenic
TAGTGGTTAGCATACGAAAA+TGG 0.383795 tig0039663:-15961 Msa1458530:five_prime_UTR
AATTATACCTTATCCATGTT+AGG 0.394411 tig0039663:+14434 Msa1458530:intergenic
ATCTCTGCTGTTGTTGTTGG+TGG 0.394430 tig0039663:+15402 Msa1458530:intergenic
AAGATCTCTGCTGTTGTTGT+TGG 0.403987 tig0039663:+15399 Msa1458530:intergenic
GCATCAGCAGCAGCTGGAAA+TGG 0.408966 tig0039663:-15049 Msa1458530:CDS
TAAGAAGCAAGTTGGTGGTT+TGG 0.410636 tig0039663:+15771 Msa1458530:intergenic
AAATAATGTTGTCCCGTTCC+AGG 0.410987 tig0039663:+15467 Msa1458530:intergenic
AACGGGACTAGTTAGAAATC+TGG 0.423807 tig0039663:-11202 Msa1458530:three_prime_UTR
AGCAAGTTGGTGGTTTGGGT+GGG 0.424425 tig0039663:+15776 Msa1458530:intergenic
TTGAGAAGAAGAAAATACTA+TGG 0.436830 tig0039663:+14958 Msa1458530:intergenic
GAAAGAAGGCGGCAATGGTA+TGG 0.439610 tig0039663:-16005 Msa1458530:five_prime_UTR
TAGTCTCCCACAAACTTCTC+TGG 0.449517 tig0039663:-14718 Msa1458530:CDS
TCTGCTGTTGTTGTTGGTGG+TGG 0.454056 tig0039663:+15405 Msa1458530:intergenic
TTCAGACATGCTGGATTTGG+CGG 0.454145 tig0039663:-11826 Msa1458530:CDS
TCACGCCTTCTTCCTGGAAC+GGG 0.457043 tig0039663:-15479 Msa1458530:CDS
GTATCGTCCACCTTCCTCAT+CGG 0.462261 tig0039663:-15630 Msa1458530:CDS
TGGCAAGTTGAAGAAGTTGC+AGG 0.465868 tig0039663:-14465 Msa1458530:CDS
GAGAGAAGAACTAGAATAAG+TGG 0.469542 tig0039663:-14485 Msa1458530:CDS
TATGATTGAGAGTGGCTAGA+TGG 0.473699 tig0039663:+15300 Msa1458530:intergenic
AAGCAAGTTGGTGGTTTGGG+TGG 0.474942 tig0039663:+15775 Msa1458530:intergenic
AGGTCTTCAAACTCAAGTTC+AGG 0.476074 tig0039663:-11790 Msa1458530:intron
TAGAAGAATAAGAAGCAAGT+TGG 0.476152 tig0039663:+15763 Msa1458530:intergenic
GGGGCCTCCACCCCAGGTAT+TGG 0.479871 tig0039663:+15009 Msa1458530:intergenic
ACAGAGCTCCATCAGTCAAA+CGG 0.480020 tig0039663:-15576 Msa1458530:CDS
TATCGTCCACCTTCCTCATC+GGG 0.481788 tig0039663:-15629 Msa1458530:CDS
CAGAGCTCCATCAGTCAAAC+GGG 0.487084 tig0039663:-15575 Msa1458530:CDS
AAGAATAAGAAGCAAGTTGG+TGG 0.487221 tig0039663:+15766 Msa1458530:intergenic
CATAATAACAATAACAATAA+CGG 0.488709 tig0039663:-15281 Msa1458530:intron
ATTATCGGGGCCTCCACCCC+AGG 0.489981 tig0039663:+15003 Msa1458530:intergenic
TGAATAATAACTTATTCTCA+TGG 0.491469 tig0039663:-11246 Msa1458530:three_prime_UTR
ACCACTGTGGATGCCATCAT+AGG 0.495661 tig0039663:-15512 Msa1458530:CDS
ATGAGTGGCGCATCCACGCT+TGG 0.498051 tig0039663:+14638 Msa1458530:intergenic
AAGAAGGTCGGGATCATCAT+TGG 0.499212 tig0039663:+14874 Msa1458530:intergenic
AACAAGTTATTCAGACATGC+TGG 0.500068 tig0039663:-11835 Msa1458530:CDS
TGTACTTTGTTTGCATCCGC+AGG 0.501831 tig0039663:+11527 Msa1458530:intergenic
CCCACAAACTTCTCTGGAGA+TGG 0.503550 tig0039663:-14712 Msa1458530:CDS
GTTAAAAGTATTGTACAAGT+GGG 0.507074 tig0039663:-15875 Msa1458530:five_prime_UTR
TAATTTAACGAATGGAAAGA+AGG 0.507445 tig0039663:-16019 None:intergenic
AAGTCTGAATTGAGTTTCAC+TGG 0.510691 tig0039663:-15121 Msa1458530:CDS
CCTTGTACCTAACATGGATA+AGG 0.512854 tig0039663:-14441 Msa1458530:intron
CCTTATCCATGTTAGGTACA+AGG 0.519581 tig0039663:+14441 Msa1458530:intergenic
CAAACGGGTCTCACAAGGTA+TGG 0.525076 tig0039663:-15560 Msa1458530:CDS
AAAGAAGGCGGCAATGGTAT+GGG 0.526664 tig0039663:-16004 Msa1458530:five_prime_UTR
AGGCAATGTAGAAGAAGGTC+GGG 0.527337 tig0039663:+14863 Msa1458530:intergenic
GTGGTGTTGAGGAGAGAGCT+AGG 0.530531 tig0039663:+15530 Msa1458530:intergenic
GATTATGCATCAGCAGCAGC+TGG 0.531366 tig0039663:-15055 Msa1458530:CDS
GGCTAGATGGTTGAGAAAGC+CGG 0.532966 tig0039663:+15313 Msa1458530:intergenic
TGCATACTAGTACCAATACC+TGG 0.536914 tig0039663:-15021 Msa1458530:CDS
GAATTGAGTTTCACTGGTGG+AGG 0.537805 tig0039663:-15115 Msa1458530:CDS
GTTGTCCCGTTCCAGGAAGA+AGG 0.539397 tig0039663:+15474 Msa1458530:intergenic
CGAAAATGGAGATACGTTGA+AGG 0.543637 tig0039663:-15947 Msa1458530:five_prime_UTR
AGTTAAAAGTATTGTACAAG+TGG 0.543783 tig0039663:-15876 Msa1458530:five_prime_UTR
CCATCTCCAGAGAAGTTTGT+GGG 0.544047 tig0039663:+14712 Msa1458530:intergenic
TGTAAAATCCGTGCCAAGCG+TGG 0.544695 tig0039663:-14651 Msa1458530:CDS
GGGGAATATTATGCATAAGC+TGG 0.546019 tig0039663:+14688 Msa1458530:intergenic
TGGCGCATCCACGCTTGGCA+CGG 0.548021 tig0039663:+14643 Msa1458530:intergenic
CCTCAATGCCCTCGAAACTC+AGG 0.548042 tig0039663:-14843 Msa1458530:intron
ATACTTGTATTTGAAAGTAG+AGG 0.552797 tig0039663:-11322 Msa1458530:three_prime_UTR
ATCCTCGTAGCATTGCTGAA+CGG 0.552987 tig0039663:-14617 Msa1458530:CDS
TGTGAGACCCGTTTGACTGA+TGG 0.553828 tig0039663:+15568 Msa1458530:intergenic
AGTACCAATACCTGGGGTGG+AGG 0.556362 tig0039663:-15013 Msa1458530:CDS
GAATGGAAAGAAGGCGGCAA+TGG 0.556862 tig0039663:-16010 Msa1458530:five_prime_UTR
TCCATCTCCAGAGAAGTTTG+TGG 0.557386 tig0039663:+14711 Msa1458530:intergenic
TGATCCTCCTACTCCTATGA+TGG 0.563521 tig0039663:+15499 Msa1458530:intergenic
GTCGGGATCATCATTGGTGT+CGG 0.563524 tig0039663:+14880 Msa1458530:intergenic
TGTTGTTGTTATTATTATCG+GGG 0.564933 tig0039663:+14990 Msa1458530:intergenic
TCTTCTTACGAAGGTCAAGC+TGG 0.565420 tig0039663:-15380 Msa1458530:CDS
ATCACGCCTTCTTCCTGGAA+CGG 0.566174 tig0039663:-15480 Msa1458530:CDS
GGCACTGTGCATAGAAGTCA+AGG 0.570057 tig0039663:-11475 Msa1458530:three_prime_UTR
CATTGAGGCAATGTAGAAGA+AGG 0.573373 tig0039663:+14858 Msa1458530:intergenic
CCTGAGTTTCGAGGGCATTG+AGG 0.579102 tig0039663:+14843 Msa1458530:intergenic
AGATGGTTGAGAAAGCCGGC+TGG 0.579941 tig0039663:+15317 Msa1458530:intergenic
ATTGTTATTATGATTGAGAG+TGG 0.580253 tig0039663:+15292 Msa1458530:intergenic
GAGGCAATGTAGAAGAAGGT+CGG 0.583589 tig0039663:+14862 Msa1458530:intergenic
GTGGATGCCATCATAGGAGT+AGG 0.587569 tig0039663:-15506 Msa1458530:CDS
CTGTTGTTGCTGAGACGAAG+AGG 0.588667 tig0039663:+15595 Msa1458530:intergenic
GAGACTAAGACAATTGAAGA+AGG 0.591621 tig0039663:+15701 Msa1458530:intergenic
AAATGGAGATACGTTGAAGG+TGG 0.592110 tig0039663:-15944 Msa1458530:five_prime_UTR
TTGGCGGTTCAACATATCAA+AGG 0.593157 tig0039663:-11810 Msa1458530:CDS
AGATGGTACCTGAGTTTCGA+GGG 0.602433 tig0039663:+14835 Msa1458530:intergenic
GCATACTAGTACCAATACCT+GGG 0.607090 tig0039663:-15020 Msa1458530:CDS
GACCTTGAGAATTGCACCTG+CGG 0.607185 tig0039663:-11543 Msa1458530:CDS
CGTCAGAAAAGCTCTCCAGC+CGG 0.607974 tig0039663:-15332 Msa1458530:CDS
TGGACGATACATGATGATGA+AGG 0.609795 tig0039663:+15643 Msa1458530:intergenic
CAACTTTAAAAGAATAACGA+AGG 0.609890 tig0039663:-11423 Msa1458530:three_prime_UTR
AGCAATGCTACGAGGATGAG+TGG 0.612328 tig0039663:+14623 Msa1458530:intergenic
GATGCCATCATAGGAGTAGG+AGG 0.612834 tig0039663:-15503 Msa1458530:CDS
ATCCGCAGGTGCAATTCTCA+AGG 0.615432 tig0039663:+11541 Msa1458530:intergenic
TATTGTACAAGTGGGGTGTG+AGG 0.616461 tig0039663:-15867 Msa1458530:five_prime_UTR
GAAGAAGAACCCGATGAGGA+AGG 0.617996 tig0039663:+15620 Msa1458530:intergenic
GAAGAACCCGATGAGGAAGG+TGG 0.619178 tig0039663:+15623 Msa1458530:intergenic
TTCTAGACTACGTCTACCAC+AGG 0.619562 tig0039663:+11369 Msa1458530:intergenic
TTGATTGAATTGCAGCTGGG+GGG 0.621095 tig0039663:-15174 Msa1458530:intron
AATGGAGATACGTTGAAGGT+GGG 0.624586 tig0039663:-15943 Msa1458530:five_prime_UTR
TCAGTCAAACGGGTCTCACA+AGG 0.625307 tig0039663:-15565 Msa1458530:CDS
ACTAGTACCAATACCTGGGG+TGG 0.626810 tig0039663:-15016 Msa1458530:CDS
GAGATGGTACCTGAGTTTCG+AGG 0.631100 tig0039663:+14834 Msa1458530:intergenic
TCGATCAATCTGTGTGCGAG+CGG 0.634546 tig0039663:+15679 Msa1458530:intergenic
TGGCATCCACAGTGGTGTTG+AGG 0.637238 tig0039663:+15519 Msa1458530:intergenic
TTAAAAGTATTGTACAAGTG+GGG 0.642477 tig0039663:-15874 Msa1458530:five_prime_UTR
TCTTACGAAGGTCAAGCTGG+TGG 0.649831 tig0039663:-15377 Msa1458530:CDS
GCAGGACCTTGTACCTAACA+TGG 0.655399 tig0039663:-14447 Msa1458530:CDS
TTTAACGAATGGAAAGAAGG+CGG 0.657049 tig0039663:-16016 None:intergenic
TTACAAGGGACAGAATCTTG+GGG 0.662437 tig0039663:+14669 Msa1458530:intergenic
TCTGAATTGAGTTTCACTGG+TGG 0.663147 tig0039663:-15118 Msa1458530:CDS
GGAAGAAGAAGAACCCGATG+AGG 0.673921 tig0039663:+15616 Msa1458530:intergenic
TCCTATGATGGCATCCACAG+TGG 0.685277 tig0039663:+15511 Msa1458530:intergenic
CAGCAGAGATCTTCTTACGA+AGG 0.692275 tig0039663:-15389 Msa1458530:CDS
CTCTCTCCTCAACACCACTG+TGG 0.695914 tig0039663:-15525 Msa1458530:CDS
ACCCGTTCAGCAATGCTACG+AGG 0.708822 tig0039663:+14615 Msa1458530:intergenic
CATACTAGTACCAATACCTG+GGG 0.719667 tig0039663:-15019 Msa1458530:CDS
TGTATGTTGTAATCTACCTG+TGG 0.747002 tig0039663:-11385 Msa1458530:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAATTATTTATGTATTTA+AGG + tig0039663:13972-13991 Msa1458530:intergenic 10.0%
!! AAAATTAATATTTCATTGAT+AGG - tig0039663:15522-15541 Msa1458530:CDS 10.0%
!! CATAATAACAATAACAATAA+CGG - tig0039663:11911-11930 Msa1458530:intron 15.0%
!! TAACTAAAAATGAAATAATG+TGG + tig0039663:12414-12433 Msa1458530:intergenic 15.0%
!! TCTATTAGAAACTTAATTAA+GGG + tig0039663:13029-13048 Msa1458530:intergenic 15.0%
!!! TTCGTTTTTTTATAAAACTA+TGG - tig0039663:13384-13403 Msa1458530:intron 15.0%
!!! CTTTTAGATATATACTTTTA+TGG + tig0039663:13650-13669 Msa1458530:intergenic 15.0%
!!! TTTATGTATGATAGTTTTTA+GGG + tig0039663:13889-13908 Msa1458530:intergenic 15.0%
!!! ATTTATGTATGATAGTTTTT+AGG + tig0039663:13890-13909 Msa1458530:intergenic 15.0%
!!! TCTTACTTTGAAAAATAAAA+AGG + tig0039663:15070-15089 Msa1458530:intergenic 15.0%
!! AATTATGAACTAATTTAACT+TGG + tig0039663:15145-15164 Msa1458530:intergenic 15.0%
!!! ATATTTTCTACAATAAGTAT+TGG - tig0039663:15216-15235 Msa1458530:intron 15.0%
!!! AATTAAAAAAAAGAGTGTAG+TGG - tig0039663:11214-11233 Msa1458530:three_prime_UTR 20.0%
!! AACAAACAAGAAAGATATAA+TGG + tig0039663:11372-11391 Msa1458530:intergenic 20.0%
!!! TTGTTGTTGTTATTATTATC+GGG + tig0039663:12206-12225 Msa1458530:intergenic 20.0%
!!! GTTGTTGTTGTTATTATTAT+CGG + tig0039663:12207-12226 Msa1458530:intergenic 20.0%
!! ATTAATATTGTGAAAAGAGA+TGG + tig0039663:12377-12396 Msa1458530:intergenic 20.0%
!! CTAGCAAATGAATTAATAAT+AGG + tig0039663:12821-12840 Msa1458530:intergenic 20.0%
!! TTCCTAATTTATCATCATTA+AGG - tig0039663:12850-12869 Msa1458530:intron 20.0%
!! TACCTTAATGATGATAAATT+AGG + tig0039663:12855-12874 Msa1458530:intergenic 20.0%
!! GTCTATTAGAAACTTAATTA+AGG + tig0039663:13030-13049 Msa1458530:intergenic 20.0%
!! AAAATAAGATAAAGGAAAAG+GGG + tig0039663:13293-13312 Msa1458530:intergenic 20.0%
!! CAAAATAAGATAAAGGAAAA+GGG + tig0039663:13294-13313 Msa1458530:intergenic 20.0%
!!! CTTTTCCTTTATCTTATTTT+GGG - tig0039663:13293-13312 Msa1458530:intron 20.0%
!!! TTTTCCTTTATCTTATTTTG+GGG - tig0039663:13294-13313 Msa1458530:intron 20.0%
!! AGCTATTACGTATAATATAA+AGG - tig0039663:13574-13593 Msa1458530:intron 20.0%
!! AGTATATATCTAAAAGAACA+AGG - tig0039663:13654-13673 Msa1458530:intron 20.0%
!! TCTTTGTTAATGATAACTAA+CGG - tig0039663:13772-13791 Msa1458530:intron 20.0%
!!! TTATGTATGATAGTTTTTAG+GGG + tig0039663:13888-13907 Msa1458530:intergenic 20.0%
!!! TACTTTGATTTGTTAATCAA+TGG - tig0039663:14591-14610 Msa1458530:intron 20.0%
!! TAAATGGTAGTTAAATACTA+TGG + tig0039663:14995-15014 Msa1458530:intergenic 20.0%
!! GTAGAAAATATTTGAATTAC+TGG + tig0039663:15207-15226 Msa1458530:intergenic 20.0%
!!! TTATGTTTTATGAGATTCTA+TGG - tig0039663:15696-15715 Msa1458530:five_prime_UTR 20.0%
!!! ACAAGTATCAAATTTTGAAA+AGG + tig0039663:15858-15877 Msa1458530:intergenic 20.0%
!! TGAATAATAACTTATTCTCA+TGG - tig0039663:15946-15965 Msa1458530:five_prime_UTR 20.0%
!!! AGTTAAAAGTATTGTACAAG+TGG - tig0039663:11316-11335 Msa1458530:three_prime_UTR 25.0%
!!! GTTAAAAGTATTGTACAAGT+GGG - tig0039663:11317-11336 Msa1458530:three_prime_UTR 25.0%
!!! TTAAAAGTATTGTACAAGTG+GGG - tig0039663:11318-11337 Msa1458530:three_prime_UTR 25.0%
!! ATTGTTATTATGATTGAGAG+TGG + tig0039663:11903-11922 Msa1458530:intergenic 25.0%
! TAAGACAAAGTCAAAATCAA+TGG - tig0039663:11951-11970 Msa1458530:intron 25.0%
!! TGCATAATCAACAACATTTT+CGG + tig0039663:12126-12145 Msa1458530:intergenic 25.0%
!! TGTTGTTGTTATTATTATCG+GGG + tig0039663:12205-12224 Msa1458530:intergenic 25.0%
! TTGAGAAGAAGAAAATACTA+TGG + tig0039663:12237-12256 Msa1458530:intergenic 25.0%
! AAAATGAAATAATGTGGTTG+TGG + tig0039663:12408-12427 Msa1458530:intergenic 25.0%
! TATACTGAATTAGGTGATTA+AGG + tig0039663:12456-12475 Msa1458530:intergenic 25.0%
! AATTATACCTTATCCATGTT+AGG + tig0039663:12761-12780 Msa1458530:intergenic 25.0%
! AATAATAGGTAACGAAAGTT+AGG + tig0039663:12807-12826 Msa1458530:intergenic 25.0%
! TGTAGTCAAAAATACTACTA+AGG - tig0039663:12940-12959 Msa1458530:intron 25.0%
! TACTACTAAGGATAAAAACT+AGG - tig0039663:12952-12971 Msa1458530:intron 25.0%
! ACTACTAAGGATAAAAACTA+GGG - tig0039663:12953-12972 Msa1458530:intron 25.0%
! GACATTCAATGAAAACTTAA+GGG + tig0039663:12995-13014 Msa1458530:intergenic 25.0%
! TGACATTCAATGAAAACTTA+AGG + tig0039663:12996-13015 Msa1458530:intergenic 25.0%
! TTAGAAACTTAATTAAGGGA+GGG + tig0039663:13025-13044 Msa1458530:intergenic 25.0%
! ATTAGAAACTTAATTAAGGG+AGG + tig0039663:13026-13045 Msa1458530:intergenic 25.0%
! AAACAGTGTTAAACAAAAAG+GGG + tig0039663:13061-13080 Msa1458530:intergenic 25.0%
! CAAACAGTGTTAAACAAAAA+GGG + tig0039663:13062-13081 Msa1458530:intergenic 25.0%
!!! AGTAGCTTTTTTTCTTTCAT+TGG + tig0039663:13113-13132 Msa1458530:intergenic 25.0%
! CCAAAATAAGATAAAGGAAA+AGG + tig0039663:13295-13314 Msa1458530:intergenic 25.0%
!!! CCTTTTCCTTTATCTTATTT+TGG - tig0039663:13292-13311 Msa1458530:intron 25.0%
! ATAAATTCCCAACTCAATAA+GGG + tig0039663:13335-13354 Msa1458530:intergenic 25.0%
! AATAAATTCCCAACTCAATA+AGG + tig0039663:13336-13355 Msa1458530:intergenic 25.0%
! TTTATTGTCAGTATTGTGTT+TGG - tig0039663:13350-13369 Msa1458530:intron 25.0%
! TTATTGTCAGTATTGTGTTT+GGG - tig0039663:13351-13370 Msa1458530:intron 25.0%
!!! ATTGCTTTGTTTAAAACTAG+AGG - tig0039663:13814-13833 Msa1458530:intron 25.0%
!!! TTGCTTTGTTTAAAACTAGA+GGG - tig0039663:13815-13834 Msa1458530:intron 25.0%
! TTTATGTATTTAAGGACTGA+TGG + tig0039663:13964-13983 Msa1458530:intergenic 25.0%
!! ACAACTTTTGTTAGTGTTAT+TGG + tig0039663:14942-14961 Msa1458530:intergenic 25.0%
!! CAAGCTACTTTAAGTTTAAA+TGG + tig0039663:15011-15030 Msa1458530:intergenic 25.0%
! AAGTAGCTTGAAACATTATA+TGG - tig0039663:15021-15040 Msa1458530:CDS 25.0%
! TTAGTTCATAATTACAGAGT+AGG - tig0039663:15152-15171 Msa1458530:CDS 25.0%
! GCATCTTCAATTGAATTTAT+AGG - tig0039663:15240-15259 Msa1458530:intron 25.0%
! AGTGTTTAACTGTGTATTAT+AGG - tig0039663:15300-15319 Msa1458530:CDS 25.0%
!!! TGTGAAGCTCTTTTTAATTT+GGG + tig0039663:15485-15504 Msa1458530:intergenic 25.0%
!!! ATGTGAAGCTCTTTTTAATT+TGG + tig0039663:15486-15505 Msa1458530:intergenic 25.0%
!!! GTTATTCTTTTAAAGTTGGA+AGG + tig0039663:15767-15786 Msa1458530:intergenic 25.0%
!!! CTTCGTTATTCTTTTAAAGT+TGG + tig0039663:15771-15790 Msa1458530:intergenic 25.0%
!! CAACTTTAAAAGAATAACGA+AGG - tig0039663:15769-15788 Msa1458530:five_prime_UTR 25.0%
! ATACTTGTATTTGAAAGTAG+AGG - tig0039663:15870-15889 Msa1458530:five_prime_UTR 25.0%
!!! TTTTTGGATTGTTTCTTGTT+TGG - tig0039663:15908-15927 Msa1458530:five_prime_UTR 25.0%
!!! TTTTGGATTGTTTCTTGTTT+GGG - tig0039663:15909-15928 Msa1458530:five_prime_UTR 25.0%
!! GGCATGTTTTGAATAAAAAG+AGG - tig0039663:11270-11289 Msa1458530:three_prime_UTR 30.0%
TAGAAGAATAAGAAGCAAGT+TGG + tig0039663:11432-11451 Msa1458530:intergenic 30.0%
!! ATTTTTGATTGAATTGCAGC+TGG - tig0039663:12014-12033 Msa1458530:intron 30.0%
!! TTTTTGATTGAATTGCAGCT+GGG - tig0039663:12015-12034 Msa1458530:intron 30.0%
AAACAGAAGCAGAAAGAAAA+AGG + tig0039663:12631-12650 Msa1458530:intergenic 30.0%
ATTGCAATACATGTATATGC+AGG - tig0039663:12685-12704 Msa1458530:intron 30.0%
AAGGTAATGCACACATTAAT+TGG - tig0039663:12869-12888 Msa1458530:intron 30.0%
CTTGTAGTAATGAAGTAGTT+AGG - tig0039663:12912-12931 Msa1458530:intron 30.0%
AACAGTGTTAAACAAAAAGG+GGG + tig0039663:13060-13079 Msa1458530:intergenic 30.0%
GCAAACAGTGTTAAACAAAA+AGG + tig0039663:13063-13082 Msa1458530:intergenic 30.0%
!!! CCTTTTTTTTCGTCTATAAC+CGG - tig0039663:13254-13273 Msa1458530:intron 30.0%
AAGGGGATGAAATTAAATAC+CGG + tig0039663:13276-13295 Msa1458530:intergenic 30.0%
AGAACCCCAAAATAAGATAA+AGG + tig0039663:13301-13320 Msa1458530:intergenic 30.0%
TTTCAAATCCCTTATTGAGT+TGG - tig0039663:13324-13343 Msa1458530:intron 30.0%
TTCAAATCCCTTATTGAGTT+GGG - tig0039663:13325-13344 Msa1458530:intron 30.0%
! AAAACTATGGTTGTTTCAAG+TGG - tig0039663:13397-13416 Msa1458530:intron 30.0%
! AACTGTGAGACAATGATTTT+GGG + tig0039663:13432-13451 Msa1458530:intergenic 30.0%
! ATAGCTTTACTTCATGTTGT+TGG + tig0039663:13560-13579 Msa1458530:intergenic 30.0%
ATGATAATAGTAAATGAGCC+AGG - tig0039663:13599-13618 Msa1458530:intron 30.0%
!! TGCTTTGTTTAAAACTAGAG+GGG - tig0039663:13816-13835 Msa1458530:intron 30.0%
! ATGTTATTTAGTGAAACCTC+AGG - tig0039663:13845-13864 Msa1458530:intron 30.0%
! TGTTATTTAGTGAAACCTCA+GGG - tig0039663:13846-13865 Msa1458530:intron 30.0%
!!! GCTGTTTCTGGTTTTTTAAA+GGG + tig0039663:14065-14084 Msa1458530:intergenic 30.0%
! CTTTAAAAAACCAGAAACAG+CGG - tig0039663:14064-14083 Msa1458530:intron 30.0%
GAAGCTCATTTACACTAAAA+TGG + tig0039663:14768-14787 Msa1458530:intergenic 30.0%
TAGCAGATAATACAGAGAAT+GGG - tig0039663:14849-14868 Msa1458530:CDS 30.0%
AGTTGTAGAAATAGTTTCAG+TGG - tig0039663:14956-14975 Msa1458530:CDS 30.0%
TAGAAATAGTTTCAGTGGAA+TGG - tig0039663:14961-14980 Msa1458530:CDS 30.0%
ATAATTACAGAGTAGGTAGA+TGG - tig0039663:15159-15178 Msa1458530:CDS 30.0%
AATTACTGGTAATACTCTCA+TGG + tig0039663:15193-15212 Msa1458530:intergenic 30.0%
! GTTGAGTTCTGTTGAATTTT+TGG - tig0039663:15892-15911 Msa1458530:five_prime_UTR 30.0%
TAGTGGTTAGCATACGAAAA+TGG - tig0039663:11231-11250 Msa1458530:three_prime_UTR 35.0%
! AAGAATAAGAAGCAAGTTGG+TGG + tig0039663:11429-11448 Msa1458530:intergenic 35.0%
GAGACTAAGACAATTGAAGA+AGG + tig0039663:11494-11513 Msa1458530:intergenic 35.0%
!! TTTTGATTGAATTGCAGCTG+GGG - tig0039663:12016-12035 Msa1458530:intron 35.0%
AAGTCTGAATTGAGTTTCAC+TGG - tig0039663:12071-12090 Msa1458530:intron 35.0%
TTTACAAGGGACAGAATCTT+GGG + tig0039663:12527-12546 Msa1458530:intergenic 35.0%
! TTTTACAAGGGACAGAATCT+TGG + tig0039663:12528-12547 Msa1458530:intergenic 35.0%
GAGAGAAGAACTAGAATAAG+TGG - tig0039663:12707-12726 Msa1458530:intron 35.0%
GAAAGTTAGGAAGCAAAAGT+TGG + tig0039663:12794-12813 Msa1458530:intergenic 35.0%
ACAGTGTTAAACAAAAAGGG+GGG + tig0039663:13059-13078 Msa1458530:intergenic 35.0%
CCGGTTATAGACGAAAAAAA+AGG + tig0039663:13257-13276 Msa1458530:intergenic 35.0%
GTATTGTGTTTGGGAAGATA+TGG - tig0039663:13360-13379 Msa1458530:intron 35.0%
! CAACTGTGAGACAATGATTT+TGG + tig0039663:13433-13452 Msa1458530:intergenic 35.0%
AGAAAGAAGAATGCTAGACA+TGG - tig0039663:13696-13715 Msa1458530:intron 35.0%
!! ATGACATTTCCAGCTTGTTA+TGG + tig0039663:13745-13764 Msa1458530:intergenic 35.0%
GTTATTTAGTGAAACCTCAG+GGG - tig0039663:13847-13866 Msa1458530:intron 35.0%
!!! CGCTGTTTCTGGTTTTTTAA+AGG + tig0039663:14066-14085 Msa1458530:intergenic 35.0%
! GGTTTTCTTTCAGTTACACA+TGG + tig0039663:14099-14118 Msa1458530:intergenic 35.0%
TGTGTAACTGAAAGAAAACC+TGG - tig0039663:14099-14118 Msa1458530:intron 35.0%
GTGTAACTGAAAGAAAACCT+GGG - tig0039663:14100-14119 Msa1458530:intron 35.0%
TAGAATCGTCTGATACTACT+CGG - tig0039663:14478-14497 Msa1458530:CDS 35.0%
ACAATAATACTCTCAAGTCC+AGG + tig0039663:14534-14553 Msa1458530:intergenic 35.0%
TCACAGTAAAACATACTCTC+CGG + tig0039663:14640-14659 Msa1458530:intergenic 35.0%
GTAGCAGATAATACAGAGAA+TGG - tig0039663:14848-14867 Msa1458530:CDS 35.0%
ATTCGACTATACAAAGAGTC+AGG - tig0039663:15111-15130 Msa1458530:CDS 35.0%
AACAAGTTATTCAGACATGC+TGG - tig0039663:15357-15376 Msa1458530:CDS 35.0%
TTATTCAGACATGCTGGATT+TGG - tig0039663:15363-15382 Msa1458530:CDS 35.0%
ATTCTACTCAGTAGAAGCTA+CGG + tig0039663:15440-15459 Msa1458530:intergenic 35.0%
!! CATAGAAGTCAAGGTTTTGA+TGG - tig0039663:15726-15745 Msa1458530:five_prime_UTR 35.0%
TGTATGTTGTAATCTACCTG+TGG - tig0039663:15807-15826 Msa1458530:five_prime_UTR 35.0%
CAGAAAAATAGAAGCGAGAA+CGG - tig0039663:15972-15991 Msa1458530:five_prime_UTR 35.0%
AGAAAAATAGAAGCGAGAAC+GGG - tig0039663:15973-15992 Msa1458530:five_prime_UTR 35.0%
CGAAAATGGAGATACGTTGA+AGG - tig0039663:11245-11264 Msa1458530:three_prime_UTR 40.0%
AAATGGAGATACGTTGAAGG+TGG - tig0039663:11248-11267 Msa1458530:three_prime_UTR 40.0%
AATGGAGATACGTTGAAGGT+GGG - tig0039663:11249-11268 Msa1458530:three_prime_UTR 40.0%
!! AAGAAGCAAGTTGGTGGTTT+GGG + tig0039663:11423-11442 Msa1458530:intergenic 40.0%
!! TAAGAAGCAAGTTGGTGGTT+TGG + tig0039663:11424-11443 Msa1458530:intergenic 40.0%
! TGGACGATACATGATGATGA+AGG + tig0039663:11552-11571 Msa1458530:intergenic 40.0%
AAATAATGTTGTCCCGTTCC+AGG + tig0039663:11728-11747 Msa1458530:intergenic 40.0%
AAGATCTCTGCTGTTGTTGT+TGG + tig0039663:11796-11815 Msa1458530:intergenic 40.0%
TATGATTGAGAGTGGCTAGA+TGG + tig0039663:11895-11914 Msa1458530:intergenic 40.0%
TTTGATTGAATTGCAGCTGG+GGG - tig0039663:12017-12036 Msa1458530:intron 40.0%
TCTGAATTGAGTTTCACTGG+TGG - tig0039663:12074-12093 Msa1458530:intron 40.0%
TGCATACTAGTACCAATACC+TGG - tig0039663:12171-12190 Msa1458530:intron 40.0%
GCATACTAGTACCAATACCT+GGG - tig0039663:12172-12191 Msa1458530:intron 40.0%
CATACTAGTACCAATACCTG+GGG - tig0039663:12173-12192 Msa1458530:intron 40.0%
CATTGAGGCAATGTAGAAGA+AGG + tig0039663:12337-12356 Msa1458530:intergenic 40.0%
GTGGGAGACTATACTGAATT+AGG + tig0039663:12465-12484 Msa1458530:intergenic 40.0%
GGGGAATATTATGCATAAGC+TGG + tig0039663:12507-12526 Msa1458530:intergenic 40.0%
TTACAAGGGACAGAATCTTG+GGG + tig0039663:12526-12545 Msa1458530:intergenic 40.0%
CCTTATCCATGTTAGGTACA+AGG + tig0039663:12754-12773 Msa1458530:intergenic 40.0%
CCTTGTACCTAACATGGATA+AGG - tig0039663:12751-12770 Msa1458530:intron 40.0%
!! GAAGCAAAAGTTGGTAGCAT+GGG + tig0039663:12785-12804 Msa1458530:intergenic 40.0%
CAGTGTTAAACAAAAAGGGG+GGG + tig0039663:13058-13077 Msa1458530:intergenic 40.0%
TTTGCCCACGTTAAGTTAAG+AGG - tig0039663:13078-13097 Msa1458530:intron 40.0%
GTAGCCTCTTAACTTAACGT+GGG + tig0039663:13085-13104 Msa1458530:intergenic 40.0%
AGTAGCCTCTTAACTTAACG+TGG + tig0039663:13086-13105 Msa1458530:intergenic 40.0%
ACAAATGAACCCCTCAATGA+AGG - tig0039663:13139-13158 Msa1458530:intron 40.0%
GTTCAACAACCTTCATTGAG+GGG + tig0039663:13151-13170 Msa1458530:intergenic 40.0%
GGTTCAACAACCTTCATTGA+GGG + tig0039663:13152-13171 Msa1458530:intergenic 40.0%
TGGTTCAACAACCTTCATTG+AGG + tig0039663:13153-13172 Msa1458530:intergenic 40.0%
GTTGTTGAACCACTCAGTAA+AGG - tig0039663:13161-13180 Msa1458530:intron 40.0%
GTTGTTCTCCATAGAGAAGA+AGG - tig0039663:13183-13202 Msa1458530:intron 40.0%
CTTCTTGTCCTTCTTCTCTA+TGG + tig0039663:13194-13213 Msa1458530:intergenic 40.0%
CATAGAGAAGAAGGACAAGA+AGG - tig0039663:13192-13211 Msa1458530:intron 40.0%
! TTGACCACTGTAGTTTGTCT+CGG - tig0039663:13479-13498 Msa1458530:intron 40.0%
AGAAGAATGCTAGACATGGA+TGG - tig0039663:13700-13719 Msa1458530:intron 40.0%
ATGCTAGACATGGATGGAAT+TGG - tig0039663:13706-13725 Msa1458530:intron 40.0%
ACATGGATGGAATTGGCATA+AGG - tig0039663:13713-13732 Msa1458530:intron 40.0%
! TAACTAACGGTGTTAACCCA+AGG - tig0039663:13785-13804 Msa1458530:intron 40.0%
! AACTAACGGTGTTAACCCAA+GGG - tig0039663:13786-13805 Msa1458530:intron 40.0%
AACTGAAAGAAAACCTGGGT+AGG - tig0039663:14104-14123 Msa1458530:intron 40.0%
TTTGAGAACCGTAGTTCAGT+TGG - tig0039663:14166-14185 Msa1458530:intron 40.0%
ACACTTCCTTTGCTGATACA+CGG + tig0039663:14280-14299 Msa1458530:intergenic 40.0%
! CGATCATGACTACATTGGTT+AGG - tig0039663:14508-14527 Msa1458530:intron 40.0%
GGTGAATTGTTTCCCTTTAG+AGG - tig0039663:14612-14631 Msa1458530:intron 40.0%
GTAACTCAAGTCACTCTCTT+TGG + tig0039663:14692-14711 Msa1458530:intergenic 40.0%
CATCTATGTTCAAAGCAAGC+AGG + tig0039663:14725-14744 Msa1458530:intergenic 40.0%
TAAGCTTCTACCGTCAACTT+TGG - tig0039663:14816-14835 Msa1458530:intron 40.0%
TTGGCGGTTCAACATATCAA+AGG - tig0039663:15382-15401 Msa1458530:CDS 40.0%
AGGTCTTCAAACTCAAGTTC+AGG - tig0039663:15402-15421 Msa1458530:CDS 40.0%
!! AACGGGACTAGTTAGAAATC+TGG - tig0039663:15990-16009 Msa1458530:five_prime_UTR 40.0%
AAAGAAGGCGGCAATGGTAT+GGG - tig0039663:11188-11207 Msa1458530:three_prime_UTR 45.0%
TATTGTACAAGTGGGGTGTG+AGG - tig0039663:11325-11344 Msa1458530:three_prime_UTR 45.0%
ACAGAGCTCCATCAGTCAAA+CGG - tig0039663:11616-11635 Msa1458530:intron 45.0%
TGATCCTCCTACTCCTATGA+TGG + tig0039663:11696-11715 Msa1458530:intergenic 45.0%
! ATCTCTGCTGTTGTTGTTGG+TGG + tig0039663:11793-11812 Msa1458530:intergenic 45.0%
CAGCAGAGATCTTCTTACGA+AGG - tig0039663:11803-11822 Msa1458530:CDS 45.0%
TCTTCTTACGAAGGTCAAGC+TGG - tig0039663:11812-11831 Msa1458530:CDS 45.0%
TTGATTGAATTGCAGCTGGG+GGG - tig0039663:12018-12037 Msa1458530:intron 45.0%
GAATTGAGTTTCACTGGTGG+AGG - tig0039663:12077-12096 Msa1458530:intron 45.0%
AAGAAGGTCGGGATCATCAT+TGG + tig0039663:12321-12340 Msa1458530:intergenic 45.0%
AGGCAATGTAGAAGAAGGTC+GGG + tig0039663:12332-12351 Msa1458530:intergenic 45.0%
GAGGCAATGTAGAAGAAGGT+CGG + tig0039663:12333-12352 Msa1458530:intergenic 45.0%
AGATGGTACCTGAGTTTCGA+GGG + tig0039663:12360-12379 Msa1458530:intergenic 45.0%
TAGTCTCCCACAAACTTCTC+TGG - tig0039663:12474-12493 Msa1458530:intron 45.0%
CCATCTCCAGAGAAGTTTGT+GGG + tig0039663:12483-12502 Msa1458530:intergenic 45.0%
TCCATCTCCAGAGAAGTTTG+TGG + tig0039663:12484-12503 Msa1458530:intergenic 45.0%
! GCTTGGCACGGATTTTACAA+GGG + tig0039663:12540-12559 Msa1458530:intergenic 45.0%
ATCCTCGTAGCATTGCTGAA+CGG - tig0039663:12575-12594 Msa1458530:intron 45.0%
! TGGCAAGTTGAAGAAGTTGC+AGG - tig0039663:12727-12746 Msa1458530:intron 45.0%
!! GGAAGCAAAAGTTGGTAGCA+TGG + tig0039663:12786-12805 Msa1458530:intergenic 45.0%
GGAGAACAACCTTTACTGAG+TGG + tig0039663:13173-13192 Msa1458530:intergenic 45.0%
ATTGCCGAGACAAACTACAG+TGG + tig0039663:13486-13505 Msa1458530:intergenic 45.0%
AAATGAGCCAGGAAAGTTGC+AGG - tig0039663:13610-13629 Msa1458530:intron 45.0%
ACTATAGCCTGCAACTTTCC+TGG + tig0039663:13620-13639 Msa1458530:intergenic 45.0%
AGGAGAATGCCATAACAAGC+TGG - tig0039663:13733-13752 Msa1458530:intron 45.0%
ACAAAGCAATCACCTCCCTT+GGG + tig0039663:13804-13823 Msa1458530:intergenic 45.0%
AACAAAGCAATCACCTCCCT+TGG + tig0039663:13805-13824 Msa1458530:intergenic 45.0%
ATTTAGTGAAACCTCAGGGG+AGG - tig0039663:13850-13869 Msa1458530:intron 45.0%
ACAGAGGAAGGCAGAAATGA+AGG - tig0039663:14027-14046 Msa1458530:intron 45.0%
AACCAGAAACAGCGGAAGTA+AGG - tig0039663:14072-14091 Msa1458530:intron 45.0%
AACGACATCACAGAGAAGAG+AGG - tig0039663:14205-14224 Msa1458530:intron 45.0%
ACTAGACCGTGAGAGAGTAA+GGG - tig0039663:14230-14249 Msa1458530:intron 45.0%
TAGTGTCCGTGTATCAGCAA+AGG - tig0039663:14271-14290 Msa1458530:intron 45.0%
GTACCAGACCAGTTTCAGAA+AGG - tig0039663:14324-14343 Msa1458530:intron 45.0%
!! AGACCTTTCTGAAACTGGTC+TGG + tig0039663:14330-14349 Msa1458530:intergenic 45.0%
!! GCAACAGACCTTTCTGAAAC+TGG + tig0039663:14335-14354 Msa1458530:intergenic 45.0%
AAGGTCTGTTGCGAAACAGA+TGG - tig0039663:14343-14362 Msa1458530:intron 45.0%
! CGAGTTTGAAGCAGGACTAT+AGG + tig0039663:14383-14402 Msa1458530:intergenic 45.0%
TCAGACGATTCTACGATCCA+CGG + tig0039663:14471-14490 Msa1458530:intergenic 45.0%
AATCGTCTGATACTACTCGG+CGG - tig0039663:14481-14500 Msa1458530:CDS 45.0%
GTTCGCGATCATGACTACAT+TGG - tig0039663:14503-14522 Msa1458530:intron 45.0%
! ATGACTACATTGGTTAGGCC+TGG - tig0039663:14513-14532 Msa1458530:intron 45.0%
! TTGTTTCCCTTTAGAGGAGC+CGG - tig0039663:14618-14637 Msa1458530:CDS 45.0%
CTTCTACCGTCAACTTTGGA+TGG - tig0039663:14820-14839 Msa1458530:intron 45.0%
CTGCTACCATCCAAAGTTGA+CGG + tig0039663:14829-14848 Msa1458530:intergenic 45.0%
TTCAGACATGCTGGATTTGG+CGG - tig0039663:15366-15385 Msa1458530:CDS 45.0%
! TGTACTTTGTTTGCATCCGC+AGG + tig0039663:15668-15687 Msa1458530:intergenic 45.0%
TTCTAGACTACGTCTACCAC+AGG + tig0039663:15826-15845 Msa1458530:intergenic 45.0%
!!! ATTATTATTATTATTAGTTT+GGG + tig0039663:12261-12280 Msa1458530:intergenic 5.0%
!! TATTATTATTATTATTAGTT+TGG + tig0039663:12262-12281 Msa1458530:intergenic 5.0%
GAAAGAAGGCGGCAATGGTA+TGG - tig0039663:11187-11206 Msa1458530:three_prime_UTR 50.0%
!! AGCAAGTTGGTGGTTTGGGT+GGG + tig0039663:11419-11438 Msa1458530:intergenic 50.0%
!! AAGCAAGTTGGTGGTTTGGG+TGG + tig0039663:11420-11439 Msa1458530:intergenic 50.0%
TCGATCAATCTGTGTGCGAG+CGG + tig0039663:11516-11535 Msa1458530:intergenic 50.0%
GTATCGTCCACCTTCCTCAT+CGG - tig0039663:11562-11581 Msa1458530:intron 50.0%
TATCGTCCACCTTCCTCATC+GGG - tig0039663:11563-11582 Msa1458530:intron 50.0%
GAAGAAGAACCCGATGAGGA+AGG + tig0039663:11575-11594 Msa1458530:intergenic 50.0%
GGAAGAAGAAGAACCCGATG+AGG + tig0039663:11579-11598 Msa1458530:intergenic 50.0%
CTGTTGTTGCTGAGACGAAG+AGG + tig0039663:11600-11619 Msa1458530:intergenic 50.0%
CAGAGCTCCATCAGTCAAAC+GGG - tig0039663:11617-11636 Msa1458530:intron 50.0%
TGTGAGACCCGTTTGACTGA+TGG + tig0039663:11627-11646 Msa1458530:intergenic 50.0%
TCAGTCAAACGGGTCTCACA+AGG - tig0039663:11627-11646 Msa1458530:intron 50.0%
CAAACGGGTCTCACAAGGTA+TGG - tig0039663:11632-11651 Msa1458530:intron 50.0%
ACCACTGTGGATGCCATCAT+AGG - tig0039663:11680-11699 Msa1458530:intron 50.0%
TCCTATGATGGCATCCACAG+TGG + tig0039663:11684-11703 Msa1458530:intergenic 50.0%
GTGGATGCCATCATAGGAGT+AGG - tig0039663:11686-11705 Msa1458530:intron 50.0%
GATGCCATCATAGGAGTAGG+AGG - tig0039663:11689-11708 Msa1458530:intron 50.0%
ATCACGCCTTCTTCCTGGAA+CGG - tig0039663:11712-11731 Msa1458530:intron 50.0%
! TCTGCTGTTGTTGTTGGTGG+TGG + tig0039663:11790-11809 Msa1458530:intergenic 50.0%
TCTTACGAAGGTCAAGCTGG+TGG - tig0039663:11815-11834 Msa1458530:CDS 50.0%
! GCTTTTCTGACGGAGCAAAG+CGG + tig0039663:11852-11871 Msa1458530:intergenic 50.0%
GGCTAGATGGTTGAGAAAGC+CGG + tig0039663:11882-11901 Msa1458530:intergenic 50.0%
GATTATGCATCAGCAGCAGC+TGG - tig0039663:12137-12156 Msa1458530:intron 50.0%
ACTAGTACCAATACCTGGGG+TGG - tig0039663:12176-12195 Msa1458530:intron 50.0%
GTCGGGATCATCATTGGTGT+CGG + tig0039663:12315-12334 Msa1458530:intergenic 50.0%
GAGATGGTACCTGAGTTTCG+AGG + tig0039663:12361-12380 Msa1458530:intergenic 50.0%
! CCCACAAACTTCTCTGGAGA+TGG - tig0039663:12480-12499 Msa1458530:intron 50.0%
! CGCTTGGCACGGATTTTACA+AGG + tig0039663:12541-12560 Msa1458530:intergenic 50.0%
TGTAAAATCCGTGCCAAGCG+TGG - tig0039663:12541-12560 Msa1458530:intron 50.0%
AGCAATGCTACGAGGATGAG+TGG + tig0039663:12572-12591 Msa1458530:intergenic 50.0%
TCCTCGTAGCATTGCTGAAC+GGG - tig0039663:12576-12595 Msa1458530:intron 50.0%
GCAGGACCTTGTACCTAACA+TGG - tig0039663:12745-12764 Msa1458530:intron 50.0%
! TAACGGTGTTAACCCAAGGG+AGG - tig0039663:13789-13808 Msa1458530:intron 50.0%
AATTGCACTAACCTCCCCTG+AGG + tig0039663:13864-13883 Msa1458530:intergenic 50.0%
TTCACCCACAGTTCAGACAG+AGG - tig0039663:14011-14030 Msa1458530:intron 50.0%
CCTTCCTCTGTCTGAACTGT+GGG + tig0039663:14018-14037 Msa1458530:intergenic 50.0%
! GACCTTACTTCCGCTGTTTC+TGG + tig0039663:14077-14096 Msa1458530:intergenic 50.0%
! TCAACTTTTGCTGCCTACCC+AGG + tig0039663:14120-14139 Msa1458530:intergenic 50.0%
AGTTGAGAACATGTCGCACG+CGG - tig0039663:14134-14153 Msa1458530:intron 50.0%
GAGAACCGTAGTTCAGTTGG+CGG - tig0039663:14169-14188 Msa1458530:intron 50.0%
GACTAGACCGTGAGAGAGTA+AGG - tig0039663:14229-14248 Msa1458530:intron 50.0%
CTAGACCGTGAGAGAGTAAG+GGG - tig0039663:14231-14250 Msa1458530:intron 50.0%
GTTTGCCCCTTACTCTCTCA+CGG + tig0039663:14239-14258 Msa1458530:intergenic 50.0%
! TGAACTCGCGAGTTTGAAGC+AGG + tig0039663:14391-14410 Msa1458530:intergenic 50.0%
CAGCAATCCTGGCTGTATGA+CGG - tig0039663:14432-14451 Msa1458530:intron 50.0%
TGTATGACGGCAAGGAACCA+TGG - tig0039663:14445-14464 Msa1458530:CDS 50.0%
TACTCTCCGGCTCCTCTAAA+GGG + tig0039663:14627-14646 Msa1458530:intergenic 50.0%
ATACTCTCCGGCTCCTCTAA+AGG + tig0039663:14628-14647 Msa1458530:intergenic 50.0%
GACCTTGAGAATTGCACCTG+CGG - tig0039663:15649-15668 Msa1458530:exon 50.0%
ATCCGCAGGTGCAATTCTCA+AGG + tig0039663:15654-15673 Msa1458530:intergenic 50.0%
GGCACTGTGCATAGAAGTCA+AGG - tig0039663:15717-15736 Msa1458530:five_prime_UTR 50.0%
! TGGTTTGGGTGGGGGTTTGA+GGG + tig0039663:11409-11428 Msa1458530:intergenic 55.0%
!! CAAGTTGGTGGTTTGGGTGG+GGG + tig0039663:11417-11436 Msa1458530:intergenic 55.0%
!! GCAAGTTGGTGGTTTGGGTG+GGG + tig0039663:11418-11437 Msa1458530:intergenic 55.0%
GAAGAACCCGATGAGGAAGG+TGG + tig0039663:11572-11591 Msa1458530:intergenic 55.0%
! GTGGTGTTGAGGAGAGAGCT+AGG + tig0039663:11665-11684 Msa1458530:intergenic 55.0%
CTCTCTCCTCAACACCACTG+TGG - tig0039663:11667-11686 Msa1458530:intron 55.0%
! TGGCATCCACAGTGGTGTTG+AGG + tig0039663:11676-11695 Msa1458530:intergenic 55.0%
TCACGCCTTCTTCCTGGAAC+GGG - tig0039663:11713-11732 Msa1458530:intron 55.0%
GTTGTCCCGTTCCAGGAAGA+AGG + tig0039663:11721-11740 Msa1458530:intergenic 55.0%
!! GGTCAAGCTGGTGGCTTTGA+TGG - tig0039663:11824-11843 Msa1458530:CDS 55.0%
! CGGCTGGAGAGCTTTTCTGA+CGG + tig0039663:11862-11881 Msa1458530:intergenic 55.0%
CGTCAGAAAAGCTCTCCAGC+CGG - tig0039663:11860-11879 Msa1458530:intron 55.0%
AGATGGTTGAGAAAGCCGGC+TGG + tig0039663:11878-11897 Msa1458530:intergenic 55.0%
TGGGGGGTTCACAATCACGA+GGG - tig0039663:12034-12053 Msa1458530:intron 55.0%
GCATCAGCAGCAGCTGGAAA+TGG - tig0039663:12143-12162 Msa1458530:intron 55.0%
AGTACCAATACCTGGGGTGG+AGG - tig0039663:12179-12198 Msa1458530:intron 55.0%
!! CCTGAGTTTCGAGGGCATTG+AGG + tig0039663:12352-12371 Msa1458530:intergenic 55.0%
CCTCAATGCCCTCGAAACTC+AGG - tig0039663:12349-12368 Msa1458530:intron 55.0%
ACCCGTTCAGCAATGCTACG+AGG + tig0039663:12580-12599 Msa1458530:intergenic 55.0%
CCCACAGTTCAGACAGAGGA+AGG - tig0039663:14015-14034 Msa1458530:intron 55.0%
GCCTTCCTCTGTCTGAACTG+TGG + tig0039663:14019-14038 Msa1458530:intergenic 55.0%
AACCGTAGTTCAGTTGGCGG+TGG - tig0039663:14172-14191 Msa1458530:intron 55.0%
! GATTGCTGGAGGTGTGTCCA+CGG + tig0039663:14420-14439 Msa1458530:intergenic 55.0%
CATACAGCCAGGATTGCTGG+AGG + tig0039663:14431-14450 Msa1458530:intergenic 55.0%
CGTCATACAGCCAGGATTGC+TGG + tig0039663:14434-14453 Msa1458530:intergenic 55.0%
ATCCTGGCTGTATGACGGCA+AGG - tig0039663:14437-14456 Msa1458530:intron 55.0%
TTCCTTGCCGTCATACAGCC+AGG + tig0039663:14442-14461 Msa1458530:intergenic 55.0%
GATTCTACGATCCACGGCCA+TGG + tig0039663:14465-14484 Msa1458530:intergenic 55.0%
! GTGGTTTGGGTGGGGGTTTG+AGG + tig0039663:11410-11429 Msa1458530:intergenic 60.0%
GGAGGATCACGCCTTCTTCC+TGG - tig0039663:11707-11726 Msa1458530:intron 60.0%
CTGCTGTTGCTGCTGCTGCT+GGG + tig0039663:11765-11784 Msa1458530:intergenic 60.0%
CTGGGGGGTTCACAATCACG+AGG - tig0039663:12033-12052 Msa1458530:intron 60.0%
GGGGGGTTCACAATCACGAG+GGG - tig0039663:12035-12054 Msa1458530:intron 60.0%
ATGAGTGGCGCATCCACGCT+TGG + tig0039663:12557-12576 Msa1458530:intergenic 60.0%
TGAGAACATGTCGCACGCGG+CGG - tig0039663:14137-14156 Msa1458530:intron 60.0%
CGCCACCGCCAACTGAACTA+CGG + tig0039663:14177-14196 Msa1458530:intergenic 60.0%
GGACACACCTCCAGCAATCC+TGG - tig0039663:14421-14440 Msa1458530:intron 60.0%
GCTGCTGTTGCTGCTGCTGC+TGG + tig0039663:11766-11785 Msa1458530:intergenic 65.0%
ATTATCGGGGCCTCCACCCC+AGG + tig0039663:12192-12211 Msa1458530:intergenic 65.0%
TGGCGCATCCACGCTTGGCA+CGG + tig0039663:12552-12571 Msa1458530:intergenic 65.0%
GTTCAGTTGGCGGTGGCGCA+AGG - tig0039663:14179-14198 Msa1458530:intron 65.0%
TCGCGAGTTCAAACCCGCCG+TGG - tig0039663:14400-14419 Msa1458530:intron 65.0%
! TGCTGGAGGTGTGTCCACGG+CGG + tig0039663:14417-14436 Msa1458530:intergenic 65.0%
ACGGCAAGGAACCATGGCCG+TGG - tig0039663:14451-14470 Msa1458530:CDS 65.0%
GGGGCCTCCACCCCAGGTAT+TGG + tig0039663:12186-12205 Msa1458530:intergenic 70.0%
CAGTTGGCGGTGGCGCAAGG+AGG - tig0039663:14182-14201 Msa1458530:intron 70.0%
! GCTGGAGGTGTGTCCACGGC+GGG + tig0039663:14416-14435 Msa1458530:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0039663 gene 11183 16031 11183 ID=Msa1458530;Name=Msa1458530
tig0039663 mRNA 11183 16031 11183 ID=Msa1458530-mRNA-1;Parent=Msa1458530;Name=Msa1458530-mRNA-1;_AED=0.03;_eAED=0.03;_QI=377|1|1|1|0.8|1|6|341|341
tig0039663 exon 11183 11577 11183 ID=Msa1458530-mRNA-1:exon:21795;Parent=Msa1458530-mRNA-1
tig0039663 exon 11791 11859 11791 ID=Msa1458530-mRNA-1:exon:21794;Parent=Msa1458530-mRNA-1
tig0039663 exon 14442 14507 14442 ID=Msa1458530-mRNA-1:exon:21793;Parent=Msa1458530-mRNA-1
tig0039663 exon 14617 14742 14617 ID=Msa1458530-mRNA-1:exon:21792;Parent=Msa1458530-mRNA-1
tig0039663 exon 14844 15181 14844 ID=Msa1458530-mRNA-1:exon:21791;Parent=Msa1458530-mRNA-1
tig0039663 exon 15282 16031 15282 ID=Msa1458530-mRNA-1:exon:21790;Parent=Msa1458530-mRNA-1
tig0039663 five_prime_UTR 15655 16031 15655 ID=Msa1458530-mRNA-1:five_prime_utr;Parent=Msa1458530-mRNA-1
tig0039663 CDS 15282 15654 15282 ID=Msa1458530-mRNA-1:cds;Parent=Msa1458530-mRNA-1
tig0039663 CDS 14844 15181 14844 ID=Msa1458530-mRNA-1:cds;Parent=Msa1458530-mRNA-1
tig0039663 CDS 14617 14742 14617 ID=Msa1458530-mRNA-1:cds;Parent=Msa1458530-mRNA-1
tig0039663 CDS 14442 14507 14442 ID=Msa1458530-mRNA-1:cds;Parent=Msa1458530-mRNA-1
tig0039663 CDS 11791 11859 11791 ID=Msa1458530-mRNA-1:cds;Parent=Msa1458530-mRNA-1
tig0039663 CDS 11524 11577 11524 ID=Msa1458530-mRNA-1:cds;Parent=Msa1458530-mRNA-1
tig0039663 three_prime_UTR 11183 11523 11183 ID=Msa1458530-mRNA-1:three_prime_utr;Parent=Msa1458530-mRNA-1
Gene Sequence

>Msa1458530

ATGTATCGTCCACCTTCCTCATCGGGTTCTTCTTCTTCCTCTTCGTCTCAGCAACAACAGAGCTCCATCAGTCAAACGGGTCTCACAAGGTATGGTTCTGCACCTAGCTCTCTCCTCAACACCACTGTGGATGCCATCATAGGAGTAGGAGGATCACGCCTTCTTCCTGGAACGGGACAACATTATTTCTCTGATGACTCTACCCAGCAGCAGCAGCAACAGCAGCACCACCACCAACAACAACAGCAGAGATCTTCTTACGAAGGTCAAGCTGGTGGCTTTGATGGATCCGCTTTGCTCCGTCAGAAAAGCTCTCCAGCCGGCTTTCTCAACCATCTAGCCACTCTCAATCATAATAACAATAACAATAACGCTGGGGGGTTCACAATCACGAGGGGCAATTCAAGATTGAAGTCTGAATTGAGTTTCACTGGTGGAGGACAAGAATGTCTTTCTCGAATATCCGAAAATGTTGTTGATTATGCATCAGCAGCAGCTGGAAATGGATCATTGCATACTAGTACCAATACCTGGGGTGGAGGCCCCGATAATAATAACAACAACAACTCAAATTCCATAGTATTTTCTTCTTCTCAAACCCAAACTAATAATAATAATAATAATAATAATAGTAAGAAGCGTTCTAGTAGAACCGACACCAATGATGATCCCGACCTTCTTCTACATTGCCTCAATGCCCTCGAAACTCAGTATAGTCTCCCACAAACTTCTCTGGAGATGGACCAGCTTATGCATAATATTCCCCAAGATTCTGTCCCTTGTAAAATCCGTGCCAAGCGTGGATGCGCCACTCATCCTCGTAGCATTGCTGAACGGGAGAGAAGAACTAGAATAAGTGGCAAGTTGAAGAAGTTGCAGGACCTTGTACCTAACATGGATAAGCAAACAAGTTATTCAGACATGCTGGATTTGGCGGTTCAACATATCAAAGGTCTTCAAACTCAAGTTCAGAAGCTTCACGAAGACCTTGAGAATTGCACCTGCGGATGCAAACAAAGTACATAA
Protein sequence

>Msa1458530

MYRPPSSSGSSSSSSSQQQQSSISQTGLTRYGSAPSSLLNTTVDAIIGVGGSRLLPGTGQHYFSDDSTQQQQQQQHHHQQQQQRSSYEGQAGGFDGSALLRQKSSPAGFLNHLATLNHNNNNNNAGGFTITRGNSRLKSELSFTGGGQECLSRISENVVDYASAAAGNGSLHTSTNTWGGGPDNNNNNNSNSIVFSSSQTQTNNNNNNNNSKKRSSRTDTNDDPDLLLHCLNALETQYSLPQTSLEMDQLMHNIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLENCTCGCKQST*