Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441190 | XP_003598119.1 | 82.759 | 464 | 34 | 5 | 1 | 418 | 1 | 464 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441190 | G7IV97 | 82.759 | 464 | 34 | 5 | 1 | 418 | 1 | 464 | 0.0 | 704 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0393150 | Msa0441190 | 0.858404 | 8.432137e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441190 | MtrunA17_Chr3g0078491 | 85.545 | 422 | 34 | 5 | 1 | 418 | 1 | 399 | 0.0 | 670 |
| Msa0441190 | MtrunA17_Chr8g0356011 | 26.512 | 430 | 250 | 17 | 9 | 414 | 24 | 411 | 4.28e-14 | 73.6 |
| Msa0441190 | MtrunA17_Chr3g0078561 | 25.107 | 466 | 212 | 21 | 9 | 417 | 20 | 405 | 4.09e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAACTGGTTCTTCTTC+TGG | 0.192285 | 3_3:+9577725 | None:intergenic |
| TGTGATATTGGCAATATTAA+AGG | 0.196479 | 3_3:-9577809 | Msa0441190:CDS |
| GGGACTCTACCTGGAATATT+TGG | 0.199534 | 3_3:+9577752 | None:intergenic |
| AACTGGTTCTTCTTCTGGTT+GGG | 0.200791 | 3_3:+9577730 | None:intergenic |
| TTACTTTCAACATTTGATTT+AGG | 0.203987 | 3_3:+9577638 | None:intergenic |
| GCTAAAGTTGAGTATGATTT+TGG | 0.225786 | 3_3:-9577914 | Msa0441190:CDS |
| GTTCCATCACATTGTGATAT+TGG | 0.249319 | 3_3:-9577821 | Msa0441190:CDS |
| ACTGAACCTCTTTGCATAAC+TGG | 0.257207 | 3_3:+9576905 | None:intergenic |
| GATCAGCTGGATCAAATAAA+AGG | 0.294691 | 3_3:-9577868 | Msa0441190:CDS |
| AGATCCTTTGCTTTCGTCCT+TGG | 0.309842 | 3_3:+9577076 | None:intergenic |
| AGTTACAAAAGTTGAGAATA+AGG | 0.313384 | 3_3:-9577357 | Msa0441190:CDS |
| AAAGCAACCATAAGAAAATA+TGG | 0.331016 | 3_3:-9578704 | Msa0441190:exon |
| AAGTGTAAAAGATGAGAATA+AGG | 0.339593 | 3_3:-9577207 | Msa0441190:CDS |
| CAACTGGTTCTTCTTCTGGT+TGG | 0.345411 | 3_3:+9577729 | None:intergenic |
| AAAAGAGTCTTTACCTCAAA+AGG | 0.355490 | 3_3:-9577450 | Msa0441190:CDS |
| AAAAGAGTCTTTAGCTCAAA+AGG | 0.380216 | 3_3:-9577408 | Msa0441190:CDS |
| ACTGGTTCTTCTTCTGGTTG+GGG | 0.391074 | 3_3:+9577731 | None:intergenic |
| CTGATTGTTCAAATTCCTGA+TGG | 0.416874 | 3_3:-9578607 | Msa0441190:intron |
| ACGCGAAGAACGATACTTGT+AGG | 0.421266 | 3_3:+9576812 | None:intergenic |
| ACAAGAGTCTTTACCTCAAA+AGG | 0.426442 | 3_3:-9577492 | Msa0441190:CDS |
| ACAATCAGAAGGTGTGAGTC+TGG | 0.429448 | 3_3:+9578622 | None:intergenic |
| CTTGATACTTTACATTGAAA+CGG | 0.443963 | 3_3:+9577843 | None:intergenic |
| ATATGAGTCTAAGCCTCAAA+AGG | 0.446821 | 3_3:-9577294 | Msa0441190:CDS |
| ATCACAATGCCAAATATTCC+AGG | 0.452545 | 3_3:-9577761 | Msa0441190:CDS |
| AATATTAAAGGTAAGATTGA+TGG | 0.465846 | 3_3:-9577797 | Msa0441190:CDS |
| CCTCAAAAGGGTCAAGATCA+AGG | 0.469599 | 3_3:-9577281 | Msa0441190:CDS |
| TGAGGAGGTAAATGATCAAA+AGG | 0.474792 | 3_3:-9577687 | Msa0441190:CDS |
| TGAGAATAAGGAAAAGCAAA+TGG | 0.489525 | 3_3:-9577195 | Msa0441190:CDS |
| ACAATTCTTGTGGTTGCACT+TGG | 0.497082 | 3_3:-9576846 | Msa0441190:CDS |
| CTGGTTCTTCTTCTGGTTGG+GGG | 0.510790 | 3_3:+9577732 | None:intergenic |
| GGTTGTAAAAGAAGAAACTA+AGG | 0.515240 | 3_3:-9577174 | Msa0441190:CDS |
| TCGTTCTTCGCGTAGAGCAT+AGG | 0.518943 | 3_3:-9576802 | None:intergenic |
| ATTCTTCCCCTATACTTGAA+AGG | 0.530453 | 3_3:-9577103 | Msa0441190:CDS |
| AAGGACGAAAGCAAAGGATC+TGG | 0.545716 | 3_3:-9577074 | Msa0441190:CDS |
| AAAGAAAACATACAAAGAGA+AGG | 0.552042 | 3_3:-9577030 | Msa0441190:CDS |
| AAAGAGTCTTTACCTCAAAA+GGG | 0.558710 | 3_3:-9577449 | Msa0441190:CDS |
| TATGAGTCTAAGCCTCAAAA+GGG | 0.561943 | 3_3:-9577293 | Msa0441190:CDS |
| AAGAAAACATACAAAGAGAA+GGG | 0.576008 | 3_3:-9577029 | Msa0441190:CDS |
| TTGAGGTAAAGACTCTTGTG+TGG | 0.578109 | 3_3:+9577496 | None:intergenic |
| CTGTAACCAGTTATGCAAAG+AGG | 0.578436 | 3_3:-9576911 | Msa0441190:CDS |
| TTCGTAGTCATATGATTGCA+AGG | 0.590913 | 3_3:+9578678 | None:intergenic |
| AAAACCAAGGACGAAAGCAA+AGG | 0.593213 | 3_3:-9577080 | Msa0441190:CDS |
| AAATAATAATAAAGCTGAGG+AGG | 0.594847 | 3_3:-9577702 | Msa0441190:CDS |
| TTGCCAATATCACAATGTGA+TGG | 0.596036 | 3_3:+9577818 | None:intergenic |
| CAGGAATTTGAACAATCAGA+AGG | 0.596828 | 3_3:+9578611 | None:intergenic |
| GTTGCAAAAGTTGATAGCAA+AGG | 0.598881 | 3_3:-9577554 | Msa0441190:CDS |
| ACTGGTTACAGCTTGAGTAG+TGG | 0.610976 | 3_3:+9576923 | None:intergenic |
| AACAGTAAAGTCACATGTGG+CGG | 0.614000 | 3_3:-9577129 | Msa0441190:CDS |
| CACTGGTGCAACAATTCTTG+TGG | 0.614455 | 3_3:-9576856 | Msa0441190:CDS |
| AGAAAATAATAATAAAGCTG+AGG | 0.616804 | 3_3:-9577705 | Msa0441190:CDS |
| AACATACAAAGAGAAGGGAA+AGG | 0.620273 | 3_3:-9577024 | Msa0441190:CDS |
| AAAAGATTCTTGAGTCAACA+AGG | 0.627724 | 3_3:-9576971 | Msa0441190:CDS |
| AAACAAAAGCTAATATACAC+TGG | 0.628935 | 3_3:-9576873 | Msa0441190:CDS |
| GAGACTTCAACTCAATCAGA+AGG | 0.630544 | 3_3:-9577320 | Msa0441190:CDS |
| AGAAACAGTAAAGTCACATG+TGG | 0.668295 | 3_3:-9577132 | Msa0441190:CDS |
| AAGGACAAGAATCAAAGACA+TGG | 0.679753 | 3_3:-9576952 | Msa0441190:CDS |
| TATACTTGAAAGGAAAACCA+AGG | 0.697329 | 3_3:-9577093 | Msa0441190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTGTTTATTTATTTTTTT+TGG | - | chr3_3:9576984-9577003 | Msa0441190:CDS | 10.0% |
| !! | AAAAAAAAAACTACTATAAA+AGG | + | chr3_3:9577489-9577508 | None:intergenic | 10.0% |
| !! | TTAAATAGTAATATTTAACA+GGG | - | chr3_3:9577518-9577537 | Msa0441190:CDS | 10.0% |
| !!! | TTGTGTTTATTTATTTTTTT+TGG | - | chr3_3:9576984-9577003 | Msa0441190:CDS | 10.0% |
| !! | AAAAAAAAAACTACTATAAA+AGG | + | chr3_3:9577489-9577508 | None:intergenic | 10.0% |
| !! | TTAAATAGTAATATTTAACA+GGG | - | chr3_3:9577518-9577537 | Msa0441190:CDS | 10.0% |
| !!! | TGTGTAATTTAAAGTTAAAT+AGG | + | chr3_3:9577163-9577182 | None:intergenic | 15.0% |
| !! | ATTACACAACATATTAAATT+TGG | - | chr3_3:9577175-9577194 | Msa0441190:CDS | 15.0% |
| !! | CTTAAATAGTAATATTTAAC+AGG | - | chr3_3:9577517-9577536 | Msa0441190:CDS | 15.0% |
| !!! | TTATTATTATTTTCTTCAAC+TGG | + | chr3_3:9577813-9577832 | None:intergenic | 15.0% |
| !!! | TGTGTAATTTAAAGTTAAAT+AGG | + | chr3_3:9577163-9577182 | None:intergenic | 15.0% |
| !! | ATTACACAACATATTAAATT+TGG | - | chr3_3:9577175-9577194 | Msa0441190:CDS | 15.0% |
| !! | CTTAAATAGTAATATTTAAC+AGG | - | chr3_3:9577517-9577536 | Msa0441190:CDS | 15.0% |
| !!! | TTATTATTATTTTCTTCAAC+TGG | + | chr3_3:9577813-9577832 | None:intergenic | 15.0% |
| !!! | GTATTCTTTTTTTCAATTAC+TGG | + | chr3_3:9576880-9576899 | None:intergenic | 20.0% |
| !!! | CTTTTTTCCTTTCTTTATAA+AGG | - | chr3_3:9577036-9577055 | Msa0441190:CDS | 20.0% |
| !! | TTAAGAACCTTTATAAAGAA+AGG | + | chr3_3:9577046-9577065 | None:intergenic | 20.0% |
| !! | ATAAAAATTCTGATAAGCAA+TGG | + | chr3_3:9577127-9577146 | None:intergenic | 20.0% |
| !! | AATATTAAAGGTAAGATTGA+TGG | - | chr3_3:9577726-9577745 | Msa0441190:CDS | 20.0% |
| !! | AGAAAATAATAATAAAGCTG+AGG | - | chr3_3:9577818-9577837 | Msa0441190:CDS | 20.0% |
| !!! | TTACTTTCAACATTTGATTT+AGG | + | chr3_3:9577888-9577907 | None:intergenic | 20.0% |
| !!! | GTATTCTTTTTTTCAATTAC+TGG | + | chr3_3:9576880-9576899 | None:intergenic | 20.0% |
| !!! | CTTTTTTCCTTTCTTTATAA+AGG | - | chr3_3:9577036-9577055 | Msa0441190:CDS | 20.0% |
| !! | TTAAGAACCTTTATAAAGAA+AGG | + | chr3_3:9577046-9577065 | None:intergenic | 20.0% |
| !! | ATAAAAATTCTGATAAGCAA+TGG | + | chr3_3:9577127-9577146 | None:intergenic | 20.0% |
| !! | AATATTAAAGGTAAGATTGA+TGG | - | chr3_3:9577726-9577745 | Msa0441190:CDS | 20.0% |
| !! | AGAAAATAATAATAAAGCTG+AGG | - | chr3_3:9577818-9577837 | Msa0441190:CDS | 20.0% |
| !!! | TTACTTTCAACATTTGATTT+AGG | + | chr3_3:9577888-9577907 | None:intergenic | 20.0% |
| !! | ATATTTTCTTATGGTTGCTT+TGG | + | chr3_3:9576820-9576839 | None:intergenic | 25.0% |
| ! | AAAGCAACCATAAGAAAATA+TGG | - | chr3_3:9576819-9576838 | Msa0441190:CDS | 25.0% |
| ! | GTTAAATAGGTAAAAGTCTT+TGG | + | chr3_3:9577150-9577169 | None:intergenic | 25.0% |
| !!! | TAGTTCGGTTTTTAAAACAT+TGG | + | chr3_3:9577298-9577317 | None:intergenic | 25.0% |
| ! | CTTGATACTTTACATTGAAA+CGG | + | chr3_3:9577683-9577702 | None:intergenic | 25.0% |
| ! | TGTGATATTGGCAATATTAA+AGG | - | chr3_3:9577714-9577733 | Msa0441190:CDS | 25.0% |
| ! | AAATAATAATAAAGCTGAGG+AGG | - | chr3_3:9577821-9577840 | Msa0441190:CDS | 25.0% |
| !!! | CTTTTTGAGAAATTTCTTCT+TGG | + | chr3_3:9578100-9578119 | None:intergenic | 25.0% |
| ! | AGTTACAAAAGTTGAGAATA+AGG | - | chr3_3:9578166-9578185 | Msa0441190:intron | 25.0% |
| ! | AAGTGTAAAAGATGAGAATA+AGG | - | chr3_3:9578316-9578335 | Msa0441190:intron | 25.0% |
| !! | TTCTCTTTGTATGTTTTCTT+TGG | + | chr3_3:9578494-9578513 | None:intergenic | 25.0% |
| ! | AAAGAAAACATACAAAGAGA+AGG | - | chr3_3:9578493-9578512 | Msa0441190:intron | 25.0% |
| ! | AAGAAAACATACAAAGAGAA+GGG | - | chr3_3:9578494-9578513 | Msa0441190:intron | 25.0% |
| ! | AAACAAAAGCTAATATACAC+TGG | - | chr3_3:9578650-9578669 | Msa0441190:CDS | 25.0% |
| !! | ATATTTTCTTATGGTTGCTT+TGG | + | chr3_3:9576820-9576839 | None:intergenic | 25.0% |
| ! | AAAGCAACCATAAGAAAATA+TGG | - | chr3_3:9576819-9576838 | Msa0441190:CDS | 25.0% |
| ! | GTTAAATAGGTAAAAGTCTT+TGG | + | chr3_3:9577150-9577169 | None:intergenic | 25.0% |
| !!! | TAGTTCGGTTTTTAAAACAT+TGG | + | chr3_3:9577298-9577317 | None:intergenic | 25.0% |
| ! | CTTGATACTTTACATTGAAA+CGG | + | chr3_3:9577683-9577702 | None:intergenic | 25.0% |
| ! | TGTGATATTGGCAATATTAA+AGG | - | chr3_3:9577714-9577733 | Msa0441190:CDS | 25.0% |
| ! | AAATAATAATAAAGCTGAGG+AGG | - | chr3_3:9577821-9577840 | Msa0441190:CDS | 25.0% |
| !!! | CTTTTTGAGAAATTTCTTCT+TGG | + | chr3_3:9578100-9578119 | None:intergenic | 25.0% |
| ! | AGTTACAAAAGTTGAGAATA+AGG | - | chr3_3:9578166-9578185 | Msa0441190:intron | 25.0% |
| ! | AAGTGTAAAAGATGAGAATA+AGG | - | chr3_3:9578316-9578335 | Msa0441190:intron | 25.0% |
| !! | TTCTCTTTGTATGTTTTCTT+TGG | + | chr3_3:9578494-9578513 | None:intergenic | 25.0% |
| ! | AAAGAAAACATACAAAGAGA+AGG | - | chr3_3:9578493-9578512 | Msa0441190:intron | 25.0% |
| ! | AAGAAAACATACAAAGAGAA+GGG | - | chr3_3:9578494-9578513 | Msa0441190:intron | 25.0% |
| ! | AAACAAAAGCTAATATACAC+TGG | - | chr3_3:9578650-9578669 | Msa0441190:CDS | 25.0% |
| ! | AAGGTAGCCATATTTTCTTA+TGG | + | chr3_3:9576829-9576848 | None:intergenic | 30.0% |
| CAAGAACATATGAATAGAAG+TGG | + | chr3_3:9576967-9576986 | None:intergenic | 30.0% | |
| AAATTCTGATAAGCAATGGA+AGG | + | chr3_3:9577123-9577142 | None:intergenic | 30.0% | |
| TTGAACTTACGTAGAGTTAT+AGG | + | chr3_3:9577339-9577358 | None:intergenic | 30.0% | |
| !!! | ATATTGCTTTTTACTACGGT+TGG | + | chr3_3:9577399-9577418 | None:intergenic | 30.0% |
| !!! | CCTCATATTGCTTTTTACTA+CGG | + | chr3_3:9577403-9577422 | None:intergenic | 30.0% |
| TATAAAAGGCTAACATCTGT+TGG | + | chr3_3:9577475-9577494 | None:intergenic | 30.0% | |
| AATTATTTAATGCACCCTAC+AGG | - | chr3_3:9577564-9577583 | Msa0441190:CDS | 30.0% | |
| ! | GCTAAAGTTGAGTATGATTT+TGG | - | chr3_3:9577609-9577628 | Msa0441190:CDS | 30.0% |
| ! | AAGTTGAGTATGATTTTGGA+AGG | - | chr3_3:9577613-9577632 | Msa0441190:CDS | 30.0% |
| !! | AGTTGAGTATGATTTTGGAA+GGG | - | chr3_3:9577614-9577633 | Msa0441190:CDS | 30.0% |
| ! | ATTTCTTCTTGATCCTTTTG+AGG | + | chr3_3:9578047-9578066 | None:intergenic | 30.0% |
| AAAAGAGTCTTTACCTCAAA+AGG | - | chr3_3:9578073-9578092 | Msa0441190:intron | 30.0% | |
| AAAGAGTCTTTACCTCAAAA+GGG | - | chr3_3:9578074-9578093 | Msa0441190:intron | 30.0% | |
| ! | AAAAGAGTCTTTAGCTCAAA+AGG | - | chr3_3:9578115-9578134 | Msa0441190:intron | 30.0% |
| !!! | TTTGCATCTTTTGTTTCTGT+AGG | + | chr3_3:9578281-9578300 | None:intergenic | 30.0% |
| TGAGAATAAGGAAAAGCAAA+TGG | - | chr3_3:9578328-9578347 | Msa0441190:intron | 30.0% | |
| GGTTGTAAAAGAAGAAACTA+AGG | - | chr3_3:9578349-9578368 | Msa0441190:intron | 30.0% | |
| !! | TGGTTTTCCTTTCAAGTATA+GGG | + | chr3_3:9578430-9578449 | None:intergenic | 30.0% |
| !! | TTGGTTTTCCTTTCAAGTAT+AGG | + | chr3_3:9578431-9578450 | None:intergenic | 30.0% |
| TATACTTGAAAGGAAAACCA+AGG | - | chr3_3:9578430-9578449 | Msa0441190:intron | 30.0% | |
| ! | TCTTTGTATGTTTTCTTTGG+AGG | + | chr3_3:9578491-9578510 | None:intergenic | 30.0% |
| AAAAGATTCTTGAGTCAACA+AGG | - | chr3_3:9578552-9578571 | Msa0441190:intron | 30.0% | |
| ! | AAGGTAGCCATATTTTCTTA+TGG | + | chr3_3:9576829-9576848 | None:intergenic | 30.0% |
| CAAGAACATATGAATAGAAG+TGG | + | chr3_3:9576967-9576986 | None:intergenic | 30.0% | |
| AAATTCTGATAAGCAATGGA+AGG | + | chr3_3:9577123-9577142 | None:intergenic | 30.0% | |
| TTGAACTTACGTAGAGTTAT+AGG | + | chr3_3:9577339-9577358 | None:intergenic | 30.0% | |
| !!! | ATATTGCTTTTTACTACGGT+TGG | + | chr3_3:9577399-9577418 | None:intergenic | 30.0% |
| !!! | CCTCATATTGCTTTTTACTA+CGG | + | chr3_3:9577403-9577422 | None:intergenic | 30.0% |
| TATAAAAGGCTAACATCTGT+TGG | + | chr3_3:9577475-9577494 | None:intergenic | 30.0% | |
| AATTATTTAATGCACCCTAC+AGG | - | chr3_3:9577564-9577583 | Msa0441190:CDS | 30.0% | |
| ! | GCTAAAGTTGAGTATGATTT+TGG | - | chr3_3:9577609-9577628 | Msa0441190:CDS | 30.0% |
| ! | AAGTTGAGTATGATTTTGGA+AGG | - | chr3_3:9577613-9577632 | Msa0441190:CDS | 30.0% |
| !! | AGTTGAGTATGATTTTGGAA+GGG | - | chr3_3:9577614-9577633 | Msa0441190:CDS | 30.0% |
| ! | ATTTCTTCTTGATCCTTTTG+AGG | + | chr3_3:9578047-9578066 | None:intergenic | 30.0% |
| AAAAGAGTCTTTACCTCAAA+AGG | - | chr3_3:9578073-9578092 | Msa0441190:intron | 30.0% | |
| AAAGAGTCTTTACCTCAAAA+GGG | - | chr3_3:9578074-9578093 | Msa0441190:intron | 30.0% | |
| ! | AAAAGAGTCTTTAGCTCAAA+AGG | - | chr3_3:9578115-9578134 | Msa0441190:intron | 30.0% |
| !!! | TTTGCATCTTTTGTTTCTGT+AGG | + | chr3_3:9578281-9578300 | None:intergenic | 30.0% |
| TGAGAATAAGGAAAAGCAAA+TGG | - | chr3_3:9578328-9578347 | Msa0441190:intron | 30.0% | |
| GGTTGTAAAAGAAGAAACTA+AGG | - | chr3_3:9578349-9578368 | Msa0441190:intron | 30.0% | |
| !! | TGGTTTTCCTTTCAAGTATA+GGG | + | chr3_3:9578430-9578449 | None:intergenic | 30.0% |
| !! | TTGGTTTTCCTTTCAAGTAT+AGG | + | chr3_3:9578431-9578450 | None:intergenic | 30.0% |
| TATACTTGAAAGGAAAACCA+AGG | - | chr3_3:9578430-9578449 | Msa0441190:intron | 30.0% | |
| ! | TCTTTGTATGTTTTCTTTGG+AGG | + | chr3_3:9578491-9578510 | None:intergenic | 30.0% |
| AAAAGATTCTTGAGTCAACA+AGG | - | chr3_3:9578552-9578571 | Msa0441190:intron | 30.0% | |
| TTCGTAGTCATATGATTGCA+AGG | + | chr3_3:9576848-9576867 | None:intergenic | 35.0% | |
| CAGGAATTTGAACAATCAGA+AGG | + | chr3_3:9576915-9576934 | None:intergenic | 35.0% | |
| CTGATTGTTCAAATTCCTGA+TGG | - | chr3_3:9576916-9576935 | Msa0441190:CDS | 35.0% | |
| !! | CAAATTCCTGATGGTTTGTT+TGG | - | chr3_3:9576925-9576944 | Msa0441190:CDS | 35.0% |
| GTTAAACCAAACAAACCATC+AGG | + | chr3_3:9576934-9576953 | None:intergenic | 35.0% | |
| AACCGAACTAGATATCAAAC+CGG | - | chr3_3:9577308-9577327 | Msa0441190:CDS | 35.0% | |
| GCTCTTGTTCGAATGTTATA+AGG | + | chr3_3:9577365-9577384 | None:intergenic | 35.0% | |
| ! | TTTTTACTACGGTTGGATTC+TGG | + | chr3_3:9577392-9577411 | None:intergenic | 35.0% |
| CCGTAGTAAAAAGCAATATG+AGG | - | chr3_3:9577400-9577419 | Msa0441190:CDS | 35.0% | |
| AAAGCAATATGAGGTTCAAC+CGG | - | chr3_3:9577409-9577428 | Msa0441190:CDS | 35.0% | |
| !! | GGTTCGGTTTTTGAAAACAT+TGG | - | chr3_3:9577443-9577462 | Msa0441190:CDS | 35.0% |
| GATCAGCTGGATCAAATAAA+AGG | - | chr3_3:9577655-9577674 | Msa0441190:CDS | 35.0% | |
| GTTCCATCACATTGTGATAT+TGG | - | chr3_3:9577702-9577721 | Msa0441190:CDS | 35.0% | |
| TTGCCAATATCACAATGTGA+TGG | + | chr3_3:9577708-9577727 | None:intergenic | 35.0% | |
| ATCACAATGCCAAATATTCC+AGG | - | chr3_3:9577762-9577781 | Msa0441190:CDS | 35.0% | |
| TGAGGAGGTAAATGATCAAA+AGG | - | chr3_3:9577836-9577855 | Msa0441190:CDS | 35.0% | |
| !! | AACTTTTTGAGCATCTTGTG+GGG | + | chr3_3:9577922-9577941 | None:intergenic | 35.0% |
| !! | GAACTTTTTGAGCATCTTGT+GGG | + | chr3_3:9577923-9577942 | None:intergenic | 35.0% |
| !! | TGAACTTTTTGAGCATCTTG+TGG | + | chr3_3:9577924-9577943 | None:intergenic | 35.0% |
| !! | GTTGCAAAAGTTGATAGCAA+AGG | - | chr3_3:9577969-9577988 | Msa0441190:intron | 35.0% |
| ACAAGAGTCTTTACCTCAAA+AGG | - | chr3_3:9578031-9578050 | Msa0441190:intron | 35.0% | |
| ATATGAGTCTAAGCCTCAAA+AGG | - | chr3_3:9578229-9578248 | Msa0441190:intron | 35.0% | |
| TATGAGTCTAAGCCTCAAAA+GGG | - | chr3_3:9578230-9578249 | Msa0441190:intron | 35.0% | |
| AGAAACAGTAAAGTCACATG+TGG | - | chr3_3:9578391-9578410 | Msa0441190:intron | 35.0% | |
| ATTCTTCCCCTATACTTGAA+AGG | - | chr3_3:9578420-9578439 | Msa0441190:intron | 35.0% | |
| !! | GGTTTTCCTTTCAAGTATAG+GGG | + | chr3_3:9578429-9578448 | None:intergenic | 35.0% |
| AACATACAAAGAGAAGGGAA+AGG | - | chr3_3:9578499-9578518 | Msa0441190:intron | 35.0% | |
| AAGGACAAGAATCAAAGACA+TGG | - | chr3_3:9578571-9578590 | Msa0441190:intron | 35.0% | |
| TTCGTAGTCATATGATTGCA+AGG | + | chr3_3:9576848-9576867 | None:intergenic | 35.0% | |
| CAGGAATTTGAACAATCAGA+AGG | + | chr3_3:9576915-9576934 | None:intergenic | 35.0% | |
| CTGATTGTTCAAATTCCTGA+TGG | - | chr3_3:9576916-9576935 | Msa0441190:CDS | 35.0% | |
| !! | CAAATTCCTGATGGTTTGTT+TGG | - | chr3_3:9576925-9576944 | Msa0441190:CDS | 35.0% |
| GTTAAACCAAACAAACCATC+AGG | + | chr3_3:9576934-9576953 | None:intergenic | 35.0% | |
| AACCGAACTAGATATCAAAC+CGG | - | chr3_3:9577308-9577327 | Msa0441190:CDS | 35.0% | |
| GCTCTTGTTCGAATGTTATA+AGG | + | chr3_3:9577365-9577384 | None:intergenic | 35.0% | |
| ! | TTTTTACTACGGTTGGATTC+TGG | + | chr3_3:9577392-9577411 | None:intergenic | 35.0% |
| CCGTAGTAAAAAGCAATATG+AGG | - | chr3_3:9577400-9577419 | Msa0441190:CDS | 35.0% | |
| AAAGCAATATGAGGTTCAAC+CGG | - | chr3_3:9577409-9577428 | Msa0441190:CDS | 35.0% | |
| !! | GGTTCGGTTTTTGAAAACAT+TGG | - | chr3_3:9577443-9577462 | Msa0441190:CDS | 35.0% |
| GATCAGCTGGATCAAATAAA+AGG | - | chr3_3:9577655-9577674 | Msa0441190:CDS | 35.0% | |
| GTTCCATCACATTGTGATAT+TGG | - | chr3_3:9577702-9577721 | Msa0441190:CDS | 35.0% | |
| TTGCCAATATCACAATGTGA+TGG | + | chr3_3:9577708-9577727 | None:intergenic | 35.0% | |
| ATCACAATGCCAAATATTCC+AGG | - | chr3_3:9577762-9577781 | Msa0441190:CDS | 35.0% | |
| TGAGGAGGTAAATGATCAAA+AGG | - | chr3_3:9577836-9577855 | Msa0441190:CDS | 35.0% | |
| !! | AACTTTTTGAGCATCTTGTG+GGG | + | chr3_3:9577922-9577941 | None:intergenic | 35.0% |
| !! | GAACTTTTTGAGCATCTTGT+GGG | + | chr3_3:9577923-9577942 | None:intergenic | 35.0% |
| !! | TGAACTTTTTGAGCATCTTG+TGG | + | chr3_3:9577924-9577943 | None:intergenic | 35.0% |
| !! | GTTGCAAAAGTTGATAGCAA+AGG | - | chr3_3:9577969-9577988 | Msa0441190:intron | 35.0% |
| ACAAGAGTCTTTACCTCAAA+AGG | - | chr3_3:9578031-9578050 | Msa0441190:intron | 35.0% | |
| ATATGAGTCTAAGCCTCAAA+AGG | - | chr3_3:9578229-9578248 | Msa0441190:intron | 35.0% | |
| TATGAGTCTAAGCCTCAAAA+GGG | - | chr3_3:9578230-9578249 | Msa0441190:intron | 35.0% | |
| AGAAACAGTAAAGTCACATG+TGG | - | chr3_3:9578391-9578410 | Msa0441190:intron | 35.0% | |
| ATTCTTCCCCTATACTTGAA+AGG | - | chr3_3:9578420-9578439 | Msa0441190:intron | 35.0% | |
| !! | GGTTTTCCTTTCAAGTATAG+GGG | + | chr3_3:9578429-9578448 | None:intergenic | 35.0% |
| AACATACAAAGAGAAGGGAA+AGG | - | chr3_3:9578499-9578518 | Msa0441190:intron | 35.0% | |
| AAGGACAAGAATCAAAGACA+TGG | - | chr3_3:9578571-9578590 | Msa0441190:intron | 35.0% | |
| ! | TTTGGAAGGGTGAGAGTTTT+TGG | - | chr3_3:9577627-9577646 | Msa0441190:CDS | 40.0% |
| !!! | GTTTTTGGTGAAAGATCAGC+TGG | - | chr3_3:9577642-9577661 | Msa0441190:CDS | 40.0% |
| ! | AACTGGTTCTTCTTCTGGTT+GGG | + | chr3_3:9577796-9577815 | None:intergenic | 40.0% |
| ! | TCTTCAACTGGTTCTTCTTC+TGG | + | chr3_3:9577801-9577820 | None:intergenic | 40.0% |
| TTGAGGTAAAGACTCTTGTG+TGG | + | chr3_3:9578030-9578049 | None:intergenic | 40.0% | |
| ! | ATTTCTTCTTGGCCCTTTTG+AGG | + | chr3_3:9578089-9578108 | None:intergenic | 40.0% |
| GAGACTTCAACTCAATCAGA+AGG | - | chr3_3:9578203-9578222 | Msa0441190:intron | 40.0% | |
| AACAGTAAAGTCACATGTGG+CGG | - | chr3_3:9578394-9578413 | Msa0441190:intron | 40.0% | |
| AAAACCAAGGACGAAAGCAA+AGG | - | chr3_3:9578443-9578462 | Msa0441190:intron | 40.0% | |
| CTGTAACCAGTTATGCAAAG+AGG | - | chr3_3:9578612-9578631 | Msa0441190:CDS | 40.0% | |
| ACTGAACCTCTTTGCATAAC+TGG | + | chr3_3:9578621-9578640 | None:intergenic | 40.0% | |
| ACAATTCTTGTGGTTGCACT+TGG | - | chr3_3:9578677-9578696 | Msa0441190:CDS | 40.0% | |
| ! | TTTGGAAGGGTGAGAGTTTT+TGG | - | chr3_3:9577627-9577646 | Msa0441190:CDS | 40.0% |
| !!! | GTTTTTGGTGAAAGATCAGC+TGG | - | chr3_3:9577642-9577661 | Msa0441190:CDS | 40.0% |
| ! | AACTGGTTCTTCTTCTGGTT+GGG | + | chr3_3:9577796-9577815 | None:intergenic | 40.0% |
| ! | TCTTCAACTGGTTCTTCTTC+TGG | + | chr3_3:9577801-9577820 | None:intergenic | 40.0% |
| TTGAGGTAAAGACTCTTGTG+TGG | + | chr3_3:9578030-9578049 | None:intergenic | 40.0% | |
| ! | ATTTCTTCTTGGCCCTTTTG+AGG | + | chr3_3:9578089-9578108 | None:intergenic | 40.0% |
| GAGACTTCAACTCAATCAGA+AGG | - | chr3_3:9578203-9578222 | Msa0441190:intron | 40.0% | |
| AACAGTAAAGTCACATGTGG+CGG | - | chr3_3:9578394-9578413 | Msa0441190:intron | 40.0% | |
| AAAACCAAGGACGAAAGCAA+AGG | - | chr3_3:9578443-9578462 | Msa0441190:intron | 40.0% | |
| CTGTAACCAGTTATGCAAAG+AGG | - | chr3_3:9578612-9578631 | Msa0441190:CDS | 40.0% | |
| ACTGAACCTCTTTGCATAAC+TGG | + | chr3_3:9578621-9578640 | None:intergenic | 40.0% | |
| ACAATTCTTGTGGTTGCACT+TGG | - | chr3_3:9578677-9578696 | Msa0441190:CDS | 40.0% | |
| ! | ACAATCAGAAGGTGTGAGTC+TGG | + | chr3_3:9576904-9576923 | None:intergenic | 45.0% |
| !! | CGCCGGTTTGATATCTAGTT+CGG | + | chr3_3:9577313-9577332 | None:intergenic | 45.0% |
| ! | CGTAGAGTTATAGGTATCGC+CGG | + | chr3_3:9577330-9577349 | None:intergenic | 45.0% |
| CAATATGAGGTTCAACCGGT+TGG | - | chr3_3:9577413-9577432 | Msa0441190:CDS | 45.0% | |
| GGGACTCTACCTGGAATATT+TGG | + | chr3_3:9577774-9577793 | None:intergenic | 45.0% | |
| ! | ACTGGTTCTTCTTCTGGTTG+GGG | + | chr3_3:9577795-9577814 | None:intergenic | 45.0% |
| ! | CAACTGGTTCTTCTTCTGGT+TGG | + | chr3_3:9577797-9577816 | None:intergenic | 45.0% |
| ! | CCTTGATCTTGACCCTTTTG+AGG | + | chr3_3:9578245-9578264 | None:intergenic | 45.0% |
| CCTCAAAAGGGTCAAGATCA+AGG | - | chr3_3:9578242-9578261 | Msa0441190:intron | 45.0% | |
| AGATCCTTTGCTTTCGTCCT+TGG | + | chr3_3:9578450-9578469 | None:intergenic | 45.0% | |
| AAGGACGAAAGCAAAGGATC+TGG | - | chr3_3:9578449-9578468 | Msa0441190:intron | 45.0% | |
| ACTGGTTACAGCTTGAGTAG+TGG | + | chr3_3:9578603-9578622 | None:intergenic | 45.0% | |
| CACTGGTGCAACAATTCTTG+TGG | - | chr3_3:9578667-9578686 | Msa0441190:CDS | 45.0% | |
| ACGCGAAGAACGATACTTGT+AGG | + | chr3_3:9578714-9578733 | None:intergenic | 45.0% | |
| ! | ACAATCAGAAGGTGTGAGTC+TGG | + | chr3_3:9576904-9576923 | None:intergenic | 45.0% |
| !! | CGCCGGTTTGATATCTAGTT+CGG | + | chr3_3:9577313-9577332 | None:intergenic | 45.0% |
| ! | CGTAGAGTTATAGGTATCGC+CGG | + | chr3_3:9577330-9577349 | None:intergenic | 45.0% |
| CAATATGAGGTTCAACCGGT+TGG | - | chr3_3:9577413-9577432 | Msa0441190:CDS | 45.0% | |
| GGGACTCTACCTGGAATATT+TGG | + | chr3_3:9577774-9577793 | None:intergenic | 45.0% | |
| ! | ACTGGTTCTTCTTCTGGTTG+GGG | + | chr3_3:9577795-9577814 | None:intergenic | 45.0% |
| ! | CAACTGGTTCTTCTTCTGGT+TGG | + | chr3_3:9577797-9577816 | None:intergenic | 45.0% |
| ! | CCTTGATCTTGACCCTTTTG+AGG | + | chr3_3:9578245-9578264 | None:intergenic | 45.0% |
| CCTCAAAAGGGTCAAGATCA+AGG | - | chr3_3:9578242-9578261 | Msa0441190:intron | 45.0% | |
| AGATCCTTTGCTTTCGTCCT+TGG | + | chr3_3:9578450-9578469 | None:intergenic | 45.0% | |
| AAGGACGAAAGCAAAGGATC+TGG | - | chr3_3:9578449-9578468 | Msa0441190:intron | 45.0% | |
| ACTGGTTACAGCTTGAGTAG+TGG | + | chr3_3:9578603-9578622 | None:intergenic | 45.0% | |
| CACTGGTGCAACAATTCTTG+TGG | - | chr3_3:9578667-9578686 | Msa0441190:CDS | 45.0% | |
| ACGCGAAGAACGATACTTGT+AGG | + | chr3_3:9578714-9578733 | None:intergenic | 45.0% | |
| GTTCAACCGGTTGGACAGTT+CGG | - | chr3_3:9577422-9577441 | Msa0441190:CDS | 50.0% | |
| ! | ACCCTACAGGTTTTGCACGA+GGG | - | chr3_3:9577577-9577596 | Msa0441190:CDS | 50.0% |
| ! | GGTTTTGCACGAGGGGATAT+TGG | - | chr3_3:9577585-9577604 | Msa0441190:CDS | 50.0% |
| ! | CTGGTTCTTCTTCTGGTTGG+GGG | + | chr3_3:9577794-9577813 | None:intergenic | 50.0% |
| GTTCAACCGGTTGGACAGTT+CGG | - | chr3_3:9577422-9577441 | Msa0441190:CDS | 50.0% | |
| ! | ACCCTACAGGTTTTGCACGA+GGG | - | chr3_3:9577577-9577596 | Msa0441190:CDS | 50.0% |
| ! | GGTTTTGCACGAGGGGATAT+TGG | - | chr3_3:9577585-9577604 | Msa0441190:CDS | 50.0% |
| ! | CTGGTTCTTCTTCTGGTTGG+GGG | + | chr3_3:9577794-9577813 | None:intergenic | 50.0% |
| ACCGGTTGGACAGTTCGGTT+CGG | - | chr3_3:9577427-9577446 | Msa0441190:CDS | 55.0% | |
| ACCGAACCGAACTGTCCAAC+CGG | + | chr3_3:9577431-9577450 | None:intergenic | 55.0% | |
| ! | CACCCTACAGGTTTTGCACG+AGG | - | chr3_3:9577576-9577595 | Msa0441190:CDS | 55.0% |
| CCCCTCGTGCAAAACCTGTA+GGG | + | chr3_3:9577581-9577600 | None:intergenic | 55.0% | |
| ! | CCCTACAGGTTTTGCACGAG+GGG | - | chr3_3:9577578-9577597 | Msa0441190:CDS | 55.0% |
| TCCCCTCGTGCAAAACCTGT+AGG | + | chr3_3:9577582-9577601 | None:intergenic | 55.0% | |
| ACCGGTTGGACAGTTCGGTT+CGG | - | chr3_3:9577427-9577446 | Msa0441190:CDS | 55.0% | |
| ACCGAACCGAACTGTCCAAC+CGG | + | chr3_3:9577431-9577450 | None:intergenic | 55.0% | |
| ! | CACCCTACAGGTTTTGCACG+AGG | - | chr3_3:9577576-9577595 | Msa0441190:CDS | 55.0% |
| CCCCTCGTGCAAAACCTGTA+GGG | + | chr3_3:9577581-9577600 | None:intergenic | 55.0% | |
| ! | CCCTACAGGTTTTGCACGAG+GGG | - | chr3_3:9577578-9577597 | Msa0441190:CDS | 55.0% |
| TCCCCTCGTGCAAAACCTGT+AGG | + | chr3_3:9577582-9577601 | None:intergenic | 55.0% | |
| TCTGGTTGGGGGACTCTACC+TGG | + | chr3_3:9577783-9577802 | None:intergenic | 60.0% | |
| TCTGGTTGGGGGACTCTACC+TGG | + | chr3_3:9577783-9577802 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 9576803 | 9578742 | 9576803 | ID=Msa0441190;Name=Msa0441190 |
| chr3_3 | mRNA | 9576803 | 9578742 | 9576803 | ID=Msa0441190-mRNA-1;Parent=Msa0441190;Name=Msa0441190-mRNA-1;_AED=0.03;_eAED=0.03;_QI=35|1|0.5|1|1|1|2|0|418 |
| chr3_3 | exon | 9576803 | 9577959 | 9576803 | ID=Msa0441190-mRNA-1:exon:1966;Parent=Msa0441190-mRNA-1 |
| chr3_3 | exon | 9578608 | 9578742 | 9578608 | ID=Msa0441190-mRNA-1:exon:1965;Parent=Msa0441190-mRNA-1 |
| chr3_3 | five_prime_UTR | 9578708 | 9578742 | 9578708 | ID=Msa0441190-mRNA-1:five_prime_utr;Parent=Msa0441190-mRNA-1 |
| chr3_3 | CDS | 9578608 | 9578707 | 9578608 | ID=Msa0441190-mRNA-1:cds;Parent=Msa0441190-mRNA-1 |
| chr3_3 | CDS | 9576803 | 9577959 | 9576803 | ID=Msa0441190-mRNA-1:cds;Parent=Msa0441190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
