Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0393150 | XP_003598119.1 | 83.621 | 464 | 32 | 3 | 1 | 420 | 1 | 464 | 0.0 | 726 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0393150 | G7IV97 | 83.621 | 464 | 32 | 3 | 1 | 420 | 1 | 464 | 0.0 | 726 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0081520 | Msa0393150 | 0.809015 | 2.331649e-50 | -8.615850e-47 |
Msa0102870 | Msa0393150 | 0.801034 | 1.089240e-48 | -8.615850e-47 |
Msa0191020 | Msa0393150 | 0.822323 | 2.519302e-53 | -8.615850e-47 |
Msa0194820 | Msa0393150 | 0.805450 | 1.327483e-49 | -8.615850e-47 |
Msa0194840 | Msa0393150 | 0.806606 | 7.579698e-50 | -8.615850e-47 |
Msa0206840 | Msa0393150 | 0.808711 | 2.708657e-50 | -8.615850e-47 |
Msa0233320 | Msa0393150 | 0.820504 | 6.622227e-53 | -8.615850e-47 |
Msa0371170 | Msa0393150 | 0.821637 | 3.632014e-53 | -8.615850e-47 |
Msa0376630 | Msa0393150 | 0.809065 | 2.275054e-50 | -8.615850e-47 |
Msa0378720 | Msa0393150 | 0.807311 | 5.376936e-50 | -8.615850e-47 |
Msa0388770 | Msa0393150 | 0.805514 | 1.286571e-49 | -8.615850e-47 |
Msa0393150 | Msa0405680 | 0.819734 | 9.938969e-53 | -8.615850e-47 |
Msa0393150 | Msa0441190 | 0.858404 | 8.432137e-63 | -8.615850e-47 |
Msa0393150 | Msa0471670 | 0.800566 | 1.357342e-48 | -8.615850e-47 |
Msa0393150 | Msa0474730 | 0.803938 | 2.745518e-49 | -8.615850e-47 |
Msa0393150 | Msa0488790 | 0.818213 | 2.204055e-52 | -8.615850e-47 |
Msa0393150 | Msa0562620 | 0.815765 | 7.819230e-52 | -8.615850e-47 |
Msa0393150 | Msa0579330 | 0.816171 | 6.344346e-52 | -8.615850e-47 |
Msa0393150 | Msa0616510 | 0.828589 | 8.266617e-55 | -8.615850e-47 |
Msa0393150 | Msa0628670 | 0.813473 | 2.514910e-51 | -8.615850e-47 |
Msa0393150 | Msa0650660 | 0.802843 | 4.628073e-49 | -8.615850e-47 |
Msa0393150 | Msa0650750 | 0.804747 | 1.862246e-49 | -8.615850e-47 |
Msa0393150 | Msa0699840 | 0.839062 | 1.983869e-57 | -8.615850e-47 |
Msa0393150 | Msa0727640 | 0.816477 | 5.419645e-52 | -8.615850e-47 |
Msa0393150 | Msa0740100 | 0.810480 | 1.128660e-50 | -8.615850e-47 |
Msa0393150 | Msa0742650 | 0.809393 | 1.934615e-50 | -8.615850e-47 |
Msa0393150 | Msa0742740 | 0.818809 | 1.614617e-52 | -8.615850e-47 |
Msa0393150 | Msa0768990 | 0.807220 | 5.620939e-50 | -8.615850e-47 |
Msa0393150 | Msa0782760 | 0.802376 | 5.778329e-49 | -8.615850e-47 |
Msa0393150 | Msa0796160 | 0.806463 | 8.126184e-50 | -8.615850e-47 |
Msa0393150 | Msa0820390 | 0.827972 | 1.164068e-54 | -8.615850e-47 |
Msa0393150 | Msa0823820 | 0.830813 | 2.377234e-55 | -8.615850e-47 |
Msa0393150 | Msa0863010 | 0.819409 | 1.179512e-52 | -8.615850e-47 |
Msa0393150 | Msa0964310 | 0.800997 | 1.108562e-48 | -8.615850e-47 |
Msa0393150 | Msa0996680 | 0.801872 | 7.336821e-49 | -8.615850e-47 |
Msa0393150 | Msa1020630 | 0.807747 | 4.346982e-50 | -8.615850e-47 |
Msa0393150 | Msa1031930 | 0.816525 | 5.288385e-52 | -8.615850e-47 |
Msa0393150 | Msa1071770 | 0.813570 | 2.394206e-51 | -8.615850e-47 |
Msa0393150 | Msa1113800 | 0.818186 | 2.234855e-52 | -8.615850e-47 |
Msa0393150 | Msa1132700 | 0.800887 | 1.167371e-48 | -8.615850e-47 |
Msa0393150 | Msa1158830 | 0.810048 | 1.398810e-50 | -8.615850e-47 |
Msa0393150 | Msa1160500 | 0.813280 | 2.772163e-51 | -8.615850e-47 |
Msa0393150 | Msa1184330 | 0.804952 | 1.687457e-49 | -8.615850e-47 |
Msa0393150 | Msa1227940 | 0.808677 | 2.753786e-50 | -8.615850e-47 |
Msa0393150 | Msa1341890 | 0.827210 | 1.774153e-54 | -8.615850e-47 |
Msa0393150 | Msa1433810 | 0.808546 | 2.936376e-50 | -8.615850e-47 |
Msa0267920 | Msa0393150 | 0.804774 | 1.838387e-49 | -8.615850e-47 |
Msa0346060 | Msa0393150 | 0.840034 | 1.108316e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0393150 | MtrunA17_Chr3g0078491 | 86.730 | 422 | 31 | 4 | 1 | 420 | 1 | 399 | 0.0 | 687 |
Msa0393150 | MtrunA17_Chr8g0356011 | 27.506 | 429 | 249 | 17 | 9 | 416 | 24 | 411 | 3.21e-15 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 59 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCAACTGGTTCTTCTTC+TGG | 0.192285 | 3_2:+7183367 | None:intergenic |
TGTGATATTGGCAATATTAA+AGG | 0.196479 | 3_2:-7183451 | Msa0393150:CDS |
GGGACTCTACCTGGAATATT+TGG | 0.199534 | 3_2:+7183394 | None:intergenic |
AACTGGTTCTTCTTCTGGTT+GGG | 0.200791 | 3_2:+7183372 | None:intergenic |
TTACTTTCAACATTTGATTT+AGG | 0.203987 | 3_2:+7183280 | None:intergenic |
GCTAAAGTTGAGTATGATTT+TGG | 0.225786 | 3_2:-7183556 | Msa0393150:CDS |
GTTCCATCACATTGTGATAT+TGG | 0.249319 | 3_2:-7183463 | Msa0393150:CDS |
ACTGAACCTCTTTGCATAAC+TGG | 0.257207 | 3_2:+7182541 | None:intergenic |
GATCAGCTGGATCAAATAAA+AGG | 0.294691 | 3_2:-7183510 | Msa0393150:CDS |
AGATCCTTTGCTTTCGTCCT+TGG | 0.309842 | 3_2:+7182718 | None:intergenic |
AAAAGAGTCTTTACCTCAAA+AGG | 0.312680 | 3_2:-7183050 | Msa0393150:CDS |
GAAATGATCAATGATAAATT+TGG | 0.327006 | 3_2:-7182644 | Msa0393150:CDS |
AAAGCAACCATAAGAAAATA+TGG | 0.331016 | 3_2:-7184349 | Msa0393150:exon |
AAGTGTAAAAGATGAGAATA+AGG | 0.339593 | 3_2:-7182849 | Msa0393150:CDS |
CAACTGGTTCTTCTTCTGGT+TGG | 0.345411 | 3_2:+7183371 | None:intergenic |
AAAAGAGTCTTTACCTCAAA+AGG | 0.355490 | 3_2:-7183092 | Msa0393150:CDS |
ACTGGTTCTTCTTCTGGTTG+GGG | 0.391074 | 3_2:+7183373 | None:intergenic |
CTCATTGTTCAAATTCCTGA+TGG | 0.397045 | 3_2:-7184252 | Msa0393150:intron |
ACATGAGTCTAAACCTCAAA+AGG | 0.411758 | 3_2:-7182936 | Msa0393150:CDS |
ACGCGAAGAACGATACTTGT+AGG | 0.421266 | 3_2:+7182448 | None:intergenic |
ACAAGAGTCTTTACCTCAAA+AGG | 0.426442 | 3_2:-7183134 | Msa0393150:CDS |
CTTGATACTTTACATTGAAA+CGG | 0.443963 | 3_2:+7183485 | None:intergenic |
AGTTGCAAAAGTTGAAAGTA+AGG | 0.451119 | 3_2:-7182999 | Msa0393150:CDS |
ATCACAATGCCAAATATTCC+AGG | 0.452545 | 3_2:-7183403 | Msa0393150:CDS |
AATATTAAAGGTAAGATTGA+TGG | 0.465846 | 3_2:-7183439 | Msa0393150:CDS |
CCTCAAAAGGGTCAAGATCA+AGG | 0.469599 | 3_2:-7182923 | Msa0393150:CDS |
TGAGGAGGTAAATGATCAAA+AGG | 0.474792 | 3_2:-7183329 | Msa0393150:CDS |
ACAATGAGAAGGTGTGAGTC+TGG | 0.480630 | 3_2:+7184267 | None:intergenic |
TGAGAATAAGGAAAAGCAAA+TGG | 0.489525 | 3_2:-7182837 | Msa0393150:CDS |
ACAATTCTTGTGGTTGCACT+TGG | 0.497082 | 3_2:-7182482 | Msa0393150:CDS |
CTGGTTCTTCTTCTGGTTGG+GGG | 0.510790 | 3_2:+7183374 | None:intergenic |
GGTTGTAAAAGAAGAAACTA+AGG | 0.515240 | 3_2:-7182816 | Msa0393150:CDS |
TCGTTCTTCGCGTAGAGCAT+AGG | 0.518943 | 3_2:-7182438 | None:intergenic |
ATTCTTCCCCTACACTTGAA+AGG | 0.537484 | 3_2:-7182745 | Msa0393150:CDS |
AAAGAGTCTTTACCTCAAAA+GGG | 0.542957 | 3_2:-7183049 | Msa0393150:CDS |
AAAGAGTCTTTACCTCAAAA+GGG | 0.558710 | 3_2:-7183091 | Msa0393150:CDS |
AATGAAAACATACAAAGAGA+AGG | 0.559419 | 3_2:-7182672 | Msa0393150:CDS |
ATGAAAACATACAAAGAGAA+GGG | 0.576008 | 3_2:-7182671 | Msa0393150:CDS |
TTGAGGTAAAGACTCTTGTG+TGG | 0.578109 | 3_2:+7183138 | None:intergenic |
CTGTAACCAGTTATGCAAAG+AGG | 0.578436 | 3_2:-7182547 | Msa0393150:CDS |
CATGAGTCTAAACCTCAAAA+GGG | 0.580915 | 3_2:-7182935 | Msa0393150:CDS |
CAGGAATTTGAACAATGAGA+AGG | 0.587809 | 3_2:+7184256 | None:intergenic |
TTCGTAGTCATATGATTGCA+AGG | 0.590913 | 3_2:+7184323 | None:intergenic |
AAAACCAAGGACGAAAGCAA+AGG | 0.593213 | 3_2:-7182722 | Msa0393150:CDS |
AAATAATAATAAAGCTGAGG+AGG | 0.594847 | 3_2:-7183344 | Msa0393150:CDS |
TTGCCAATATCACAATGTGA+TGG | 0.596036 | 3_2:+7183460 | None:intergenic |
GTTGCAAAAGTTGATAGCAA+AGG | 0.598881 | 3_2:-7183196 | Msa0393150:CDS |
ACTGGTTACAGCTTGAGTAG+TGG | 0.610976 | 3_2:+7182559 | None:intergenic |
AACAGTAAAGTCACATGTGG+CGG | 0.614000 | 3_2:-7182771 | Msa0393150:CDS |
CACTGGTGCAACAATTCTTG+TGG | 0.614455 | 3_2:-7182492 | Msa0393150:CDS |
AGAAAATAATAATAAAGCTG+AGG | 0.616804 | 3_2:-7183347 | Msa0393150:CDS |
AAACAAAAGCTAATATACAC+TGG | 0.628935 | 3_2:-7182509 | Msa0393150:CDS |
GAGACTTCAACTCAATCAGA+AGG | 0.630544 | 3_2:-7182962 | Msa0393150:CDS |
AACATACAAAGAGAAGGGAA+AGG | 0.642709 | 3_2:-7182666 | Msa0393150:CDS |
AAAAGATTCTTGATTCAACA+AGG | 0.644606 | 3_2:-7182607 | Msa0393150:CDS |
AGAAACAGTAAAGTCACATG+TGG | 0.668295 | 3_2:-7182774 | Msa0393150:CDS |
TGGAGGAAAAGTTTCAACTG+TGG | 0.675102 | 3_2:+7182694 | None:intergenic |
AAGGACAAGAATCAAAGACA+TGG | 0.679753 | 3_2:-7182588 | Msa0393150:CDS |
TACACTTGAAAGGAAAACCA+AGG | 0.691297 | 3_2:-7182735 | Msa0393150:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGTGTTTATTTATTTTTTT+TGG | - | chr3_2:7182620-7182639 | Msa0393150:CDS | 10.0% |
!! | AAAAAAAAAACTACTATAAA+AGG | + | chr3_2:7183125-7183144 | None:intergenic | 10.0% |
!! | TTAAATAGTAATATTTAACA+GGG | - | chr3_2:7183157-7183176 | Msa0393150:CDS | 10.0% |
!!! | TTGTGTTTATTTATTTTTTT+TGG | - | chr3_2:7182620-7182639 | Msa0393150:CDS | 10.0% |
!! | AAAAAAAAAACTACTATAAA+AGG | + | chr3_2:7183125-7183144 | None:intergenic | 10.0% |
!! | TTAAATAGTAATATTTAACA+GGG | - | chr3_2:7183157-7183176 | Msa0393150:CDS | 10.0% |
!!! | TGTGTAATTTAAAGTTAAAT+AGG | + | chr3_2:7182799-7182818 | None:intergenic | 15.0% |
!! | ATTACACAACATATTAAATT+TGG | - | chr3_2:7182811-7182830 | Msa0393150:CDS | 15.0% |
!! | CTTAAATAGTAATATTTAAC+AGG | - | chr3_2:7183156-7183175 | Msa0393150:CDS | 15.0% |
!!! | TTATTATTATTTTCTTCAAC+TGG | + | chr3_2:7183452-7183471 | None:intergenic | 15.0% |
!!! | TGTGTAATTTAAAGTTAAAT+AGG | + | chr3_2:7182799-7182818 | None:intergenic | 15.0% |
!! | ATTACACAACATATTAAATT+TGG | - | chr3_2:7182811-7182830 | Msa0393150:CDS | 15.0% |
!! | CTTAAATAGTAATATTTAAC+AGG | - | chr3_2:7183156-7183175 | Msa0393150:CDS | 15.0% |
!!! | TTATTATTATTTTCTTCAAC+TGG | + | chr3_2:7183452-7183471 | None:intergenic | 15.0% |
!!! | GTATTCTTTTTTTCAATTAC+TGG | + | chr3_2:7182516-7182535 | None:intergenic | 20.0% |
!!! | CTTTTTTCCTTTCTTTATAA+AGG | - | chr3_2:7182672-7182691 | Msa0393150:CDS | 20.0% |
!! | TTAAGAACCTTTATAAAGAA+AGG | + | chr3_2:7182682-7182701 | None:intergenic | 20.0% |
!! | ATAAAAATTCTGATAAGCAA+TGG | + | chr3_2:7182763-7182782 | None:intergenic | 20.0% |
!! | AATATTAAAGGTAAGATTGA+TGG | - | chr3_2:7183365-7183384 | Msa0393150:CDS | 20.0% |
!! | AGAAAATAATAATAAAGCTG+AGG | - | chr3_2:7183457-7183476 | Msa0393150:CDS | 20.0% |
!!! | TTACTTTCAACATTTGATTT+AGG | + | chr3_2:7183527-7183546 | None:intergenic | 20.0% |
!! | GAAATGATCAATGATAAATT+TGG | - | chr3_2:7184160-7184179 | Msa0393150:intron | 20.0% |
!!! | GTATTCTTTTTTTCAATTAC+TGG | + | chr3_2:7182516-7182535 | None:intergenic | 20.0% |
!!! | CTTTTTTCCTTTCTTTATAA+AGG | - | chr3_2:7182672-7182691 | Msa0393150:CDS | 20.0% |
!! | TTAAGAACCTTTATAAAGAA+AGG | + | chr3_2:7182682-7182701 | None:intergenic | 20.0% |
!! | ATAAAAATTCTGATAAGCAA+TGG | + | chr3_2:7182763-7182782 | None:intergenic | 20.0% |
!! | AATATTAAAGGTAAGATTGA+TGG | - | chr3_2:7183365-7183384 | Msa0393150:CDS | 20.0% |
!! | AGAAAATAATAATAAAGCTG+AGG | - | chr3_2:7183457-7183476 | Msa0393150:CDS | 20.0% |
!!! | TTACTTTCAACATTTGATTT+AGG | + | chr3_2:7183527-7183546 | None:intergenic | 20.0% |
!! | GAAATGATCAATGATAAATT+TGG | - | chr3_2:7184160-7184179 | Msa0393150:intron | 20.0% |
! | AAAGCAACCATAAGAAAATA+TGG | - | chr3_2:7182455-7182474 | Msa0393150:CDS | 25.0% |
! | GTTAAATAGGTAAAAGTCTT+TGG | + | chr3_2:7182786-7182805 | None:intergenic | 25.0% |
!!! | TAGTTCGGTTTTTAAAACAT+TGG | + | chr3_2:7182934-7182953 | None:intergenic | 25.0% |
! | CTTGATACTTTACATTGAAA+CGG | + | chr3_2:7183322-7183341 | None:intergenic | 25.0% |
! | TGTGATATTGGCAATATTAA+AGG | - | chr3_2:7183353-7183372 | Msa0393150:CDS | 25.0% |
! | AAATAATAATAAAGCTGAGG+AGG | - | chr3_2:7183460-7183479 | Msa0393150:CDS | 25.0% |
!!! | CTTTTTGAGAAATTTCTTCT+TGG | + | chr3_2:7183739-7183758 | None:intergenic | 25.0% |
! | AAGTGTAAAAGATGAGAATA+AGG | - | chr3_2:7183955-7183974 | Msa0393150:intron | 25.0% |
!! | TTCTCTTTGTATGTTTTCAT+TGG | + | chr3_2:7184133-7184152 | None:intergenic | 25.0% |
! | AATGAAAACATACAAAGAGA+AGG | - | chr3_2:7184132-7184151 | Msa0393150:intron | 25.0% |
! | ATGAAAACATACAAAGAGAA+GGG | - | chr3_2:7184133-7184152 | Msa0393150:intron | 25.0% |
! | AAAAGATTCTTGATTCAACA+AGG | - | chr3_2:7184197-7184216 | Msa0393150:intron | 25.0% |
! | AAACAAAAGCTAATATACAC+TGG | - | chr3_2:7184295-7184314 | Msa0393150:CDS | 25.0% |
! | AAAGCAACCATAAGAAAATA+TGG | - | chr3_2:7182455-7182474 | Msa0393150:CDS | 25.0% |
! | GTTAAATAGGTAAAAGTCTT+TGG | + | chr3_2:7182786-7182805 | None:intergenic | 25.0% |
!!! | TAGTTCGGTTTTTAAAACAT+TGG | + | chr3_2:7182934-7182953 | None:intergenic | 25.0% |
! | CTTGATACTTTACATTGAAA+CGG | + | chr3_2:7183322-7183341 | None:intergenic | 25.0% |
! | TGTGATATTGGCAATATTAA+AGG | - | chr3_2:7183353-7183372 | Msa0393150:CDS | 25.0% |
! | AAATAATAATAAAGCTGAGG+AGG | - | chr3_2:7183460-7183479 | Msa0393150:CDS | 25.0% |
!!! | CTTTTTGAGAAATTTCTTCT+TGG | + | chr3_2:7183739-7183758 | None:intergenic | 25.0% |
! | AAGTGTAAAAGATGAGAATA+AGG | - | chr3_2:7183955-7183974 | Msa0393150:intron | 25.0% |
!! | TTCTCTTTGTATGTTTTCAT+TGG | + | chr3_2:7184133-7184152 | None:intergenic | 25.0% |
! | AATGAAAACATACAAAGAGA+AGG | - | chr3_2:7184132-7184151 | Msa0393150:intron | 25.0% |
! | ATGAAAACATACAAAGAGAA+GGG | - | chr3_2:7184133-7184152 | Msa0393150:intron | 25.0% |
! | AAAAGATTCTTGATTCAACA+AGG | - | chr3_2:7184197-7184216 | Msa0393150:intron | 25.0% |
! | AAACAAAAGCTAATATACAC+TGG | - | chr3_2:7184295-7184314 | Msa0393150:CDS | 25.0% |
! | AAGGTAGCCATATTTTCTTA+TGG | + | chr3_2:7182465-7182484 | None:intergenic | 30.0% |
CAAGAACATATGAATAGAAG+TGG | + | chr3_2:7182603-7182622 | None:intergenic | 30.0% | |
AAATTCTGATAAGCAATGGA+AGG | + | chr3_2:7182759-7182778 | None:intergenic | 30.0% | |
TTGAACTTACGTAGAGTTAT+AGG | + | chr3_2:7182975-7182994 | None:intergenic | 30.0% | |
!!! | ATATTGCTTTTTACTACGGT+TGG | + | chr3_2:7183035-7183054 | None:intergenic | 30.0% |
!!! | CCTCATATTGCTTTTTACTA+CGG | + | chr3_2:7183039-7183058 | None:intergenic | 30.0% |
TATAAAAGGCTAACATCTGT+TGG | + | chr3_2:7183111-7183130 | None:intergenic | 30.0% | |
AATTATTTAATGCACCCTAC+AGG | - | chr3_2:7183203-7183222 | Msa0393150:CDS | 30.0% | |
! | GCTAAAGTTGAGTATGATTT+TGG | - | chr3_2:7183248-7183267 | Msa0393150:CDS | 30.0% |
! | AAGTTGAGTATGATTTTGGA+AGG | - | chr3_2:7183252-7183271 | Msa0393150:CDS | 30.0% |
!! | AGTTGAGTATGATTTTGGAA+GGG | - | chr3_2:7183253-7183272 | Msa0393150:CDS | 30.0% |
! | ATTTCTTCTTGATCCTTTTG+AGG | + | chr3_2:7183686-7183705 | None:intergenic | 30.0% |
AAAAGAGTCTTTACCTCAAA+AGG | - | chr3_2:7183712-7183731 | Msa0393150:intron | 30.0% | |
AAAGAGTCTTTACCTCAAAA+GGG | - | chr3_2:7183713-7183732 | Msa0393150:intron | 30.0% | |
AAAAGAGTCTTTACCTCAAA+AGG | - | chr3_2:7183712-7183731 | Msa0393150:intron | 30.0% | |
AAAGAGTCTTTACCTCAAAA+GGG | - | chr3_2:7183713-7183732 | Msa0393150:intron | 30.0% | |
AGTTGCAAAAGTTGAAAGTA+AGG | - | chr3_2:7183805-7183824 | Msa0393150:intron | 30.0% | |
! | TTTGCATCTTTTGTATCTGT+AGG | + | chr3_2:7183920-7183939 | None:intergenic | 30.0% |
TGAGAATAAGGAAAAGCAAA+TGG | - | chr3_2:7183967-7183986 | Msa0393150:intron | 30.0% | |
GGTTGTAAAAGAAGAAACTA+AGG | - | chr3_2:7183988-7184007 | Msa0393150:intron | 30.0% | |
! | TCTTTGTATGTTTTCATTGG+AGG | + | chr3_2:7184130-7184149 | None:intergenic | 30.0% |
! | AAGGTAGCCATATTTTCTTA+TGG | + | chr3_2:7182465-7182484 | None:intergenic | 30.0% |
CAAGAACATATGAATAGAAG+TGG | + | chr3_2:7182603-7182622 | None:intergenic | 30.0% | |
AAATTCTGATAAGCAATGGA+AGG | + | chr3_2:7182759-7182778 | None:intergenic | 30.0% | |
TTGAACTTACGTAGAGTTAT+AGG | + | chr3_2:7182975-7182994 | None:intergenic | 30.0% | |
!!! | ATATTGCTTTTTACTACGGT+TGG | + | chr3_2:7183035-7183054 | None:intergenic | 30.0% |
!!! | CCTCATATTGCTTTTTACTA+CGG | + | chr3_2:7183039-7183058 | None:intergenic | 30.0% |
TATAAAAGGCTAACATCTGT+TGG | + | chr3_2:7183111-7183130 | None:intergenic | 30.0% | |
AATTATTTAATGCACCCTAC+AGG | - | chr3_2:7183203-7183222 | Msa0393150:CDS | 30.0% | |
! | GCTAAAGTTGAGTATGATTT+TGG | - | chr3_2:7183248-7183267 | Msa0393150:CDS | 30.0% |
! | AAGTTGAGTATGATTTTGGA+AGG | - | chr3_2:7183252-7183271 | Msa0393150:CDS | 30.0% |
!! | AGTTGAGTATGATTTTGGAA+GGG | - | chr3_2:7183253-7183272 | Msa0393150:CDS | 30.0% |
! | ATTTCTTCTTGATCCTTTTG+AGG | + | chr3_2:7183686-7183705 | None:intergenic | 30.0% |
AAAAGAGTCTTTACCTCAAA+AGG | - | chr3_2:7183712-7183731 | Msa0393150:intron | 30.0% | |
AAAGAGTCTTTACCTCAAAA+GGG | - | chr3_2:7183713-7183732 | Msa0393150:intron | 30.0% | |
AAAAGAGTCTTTACCTCAAA+AGG | - | chr3_2:7183712-7183731 | Msa0393150:intron | 30.0% | |
AAAGAGTCTTTACCTCAAAA+GGG | - | chr3_2:7183713-7183732 | Msa0393150:intron | 30.0% | |
AGTTGCAAAAGTTGAAAGTA+AGG | - | chr3_2:7183805-7183824 | Msa0393150:intron | 30.0% | |
! | TTTGCATCTTTTGTATCTGT+AGG | + | chr3_2:7183920-7183939 | None:intergenic | 30.0% |
TGAGAATAAGGAAAAGCAAA+TGG | - | chr3_2:7183967-7183986 | Msa0393150:intron | 30.0% | |
GGTTGTAAAAGAAGAAACTA+AGG | - | chr3_2:7183988-7184007 | Msa0393150:intron | 30.0% | |
! | TCTTTGTATGTTTTCATTGG+AGG | + | chr3_2:7184130-7184149 | None:intergenic | 30.0% |
TTCGTAGTCATATGATTGCA+AGG | + | chr3_2:7182484-7182503 | None:intergenic | 35.0% | |
CAGGAATTTGAACAATGAGA+AGG | + | chr3_2:7182551-7182570 | None:intergenic | 35.0% | |
CTCATTGTTCAAATTCCTGA+TGG | - | chr3_2:7182552-7182571 | Msa0393150:CDS | 35.0% | |
!! | CAAATTCCTGATGGTTTGTT+TGG | - | chr3_2:7182561-7182580 | Msa0393150:CDS | 35.0% |
GTTAAACCAAACAAACCATC+AGG | + | chr3_2:7182570-7182589 | None:intergenic | 35.0% | |
AACCGAACTAGATATCAAAC+CGG | - | chr3_2:7182944-7182963 | Msa0393150:CDS | 35.0% | |
GCTCTTGTTCGAATGTTATA+AGG | + | chr3_2:7183001-7183020 | None:intergenic | 35.0% | |
! | TTTTTACTACGGTTGGATTC+TGG | + | chr3_2:7183028-7183047 | None:intergenic | 35.0% |
CCGTAGTAAAAAGCAATATG+AGG | - | chr3_2:7183036-7183055 | Msa0393150:CDS | 35.0% | |
AAAGCAATATGAGGTTCAAC+CGG | - | chr3_2:7183045-7183064 | Msa0393150:CDS | 35.0% | |
!! | GGTTCGGTTTTTGAAAACAT+TGG | - | chr3_2:7183079-7183098 | Msa0393150:CDS | 35.0% |
GATCAGCTGGATCAAATAAA+AGG | - | chr3_2:7183294-7183313 | Msa0393150:CDS | 35.0% | |
GTTCCATCACATTGTGATAT+TGG | - | chr3_2:7183341-7183360 | Msa0393150:CDS | 35.0% | |
TTGCCAATATCACAATGTGA+TGG | + | chr3_2:7183347-7183366 | None:intergenic | 35.0% | |
ATCACAATGCCAAATATTCC+AGG | - | chr3_2:7183401-7183420 | Msa0393150:CDS | 35.0% | |
TGAGGAGGTAAATGATCAAA+AGG | - | chr3_2:7183475-7183494 | Msa0393150:CDS | 35.0% | |
!! | AACTTTTTGAGCATCTTGTG+GGG | + | chr3_2:7183561-7183580 | None:intergenic | 35.0% |
!! | GAACTTTTTGAGCATCTTGT+GGG | + | chr3_2:7183562-7183581 | None:intergenic | 35.0% |
!! | TGAACTTTTTGAGCATCTTG+TGG | + | chr3_2:7183563-7183582 | None:intergenic | 35.0% |
!! | GTTGCAAAAGTTGATAGCAA+AGG | - | chr3_2:7183608-7183627 | Msa0393150:intron | 35.0% |
ACAAGAGTCTTTACCTCAAA+AGG | - | chr3_2:7183670-7183689 | Msa0393150:intron | 35.0% | |
! | ATTTCTTCTTGACCCTTTTG+AGG | + | chr3_2:7183770-7183789 | None:intergenic | 35.0% |
ACATGAGTCTAAACCTCAAA+AGG | - | chr3_2:7183868-7183887 | Msa0393150:intron | 35.0% | |
CATGAGTCTAAACCTCAAAA+GGG | - | chr3_2:7183869-7183888 | Msa0393150:intron | 35.0% | |
AGAAACAGTAAAGTCACATG+TGG | - | chr3_2:7184030-7184049 | Msa0393150:intron | 35.0% | |
!! | TGGTTTTCCTTTCAAGTGTA+GGG | + | chr3_2:7184069-7184088 | None:intergenic | 35.0% |
!! | TTGGTTTTCCTTTCAAGTGT+AGG | + | chr3_2:7184070-7184089 | None:intergenic | 35.0% |
TACACTTGAAAGGAAAACCA+AGG | - | chr3_2:7184069-7184088 | Msa0393150:intron | 35.0% | |
AACATACAAAGAGAAGGGAA+AGG | - | chr3_2:7184138-7184157 | Msa0393150:intron | 35.0% | |
AAGGACAAGAATCAAAGACA+TGG | - | chr3_2:7184216-7184235 | Msa0393150:intron | 35.0% | |
TTCGTAGTCATATGATTGCA+AGG | + | chr3_2:7182484-7182503 | None:intergenic | 35.0% | |
CAGGAATTTGAACAATGAGA+AGG | + | chr3_2:7182551-7182570 | None:intergenic | 35.0% | |
CTCATTGTTCAAATTCCTGA+TGG | - | chr3_2:7182552-7182571 | Msa0393150:CDS | 35.0% | |
!! | CAAATTCCTGATGGTTTGTT+TGG | - | chr3_2:7182561-7182580 | Msa0393150:CDS | 35.0% |
GTTAAACCAAACAAACCATC+AGG | + | chr3_2:7182570-7182589 | None:intergenic | 35.0% | |
AACCGAACTAGATATCAAAC+CGG | - | chr3_2:7182944-7182963 | Msa0393150:CDS | 35.0% | |
GCTCTTGTTCGAATGTTATA+AGG | + | chr3_2:7183001-7183020 | None:intergenic | 35.0% | |
! | TTTTTACTACGGTTGGATTC+TGG | + | chr3_2:7183028-7183047 | None:intergenic | 35.0% |
CCGTAGTAAAAAGCAATATG+AGG | - | chr3_2:7183036-7183055 | Msa0393150:CDS | 35.0% | |
AAAGCAATATGAGGTTCAAC+CGG | - | chr3_2:7183045-7183064 | Msa0393150:CDS | 35.0% | |
!! | GGTTCGGTTTTTGAAAACAT+TGG | - | chr3_2:7183079-7183098 | Msa0393150:CDS | 35.0% |
GATCAGCTGGATCAAATAAA+AGG | - | chr3_2:7183294-7183313 | Msa0393150:CDS | 35.0% | |
GTTCCATCACATTGTGATAT+TGG | - | chr3_2:7183341-7183360 | Msa0393150:CDS | 35.0% | |
TTGCCAATATCACAATGTGA+TGG | + | chr3_2:7183347-7183366 | None:intergenic | 35.0% | |
ATCACAATGCCAAATATTCC+AGG | - | chr3_2:7183401-7183420 | Msa0393150:CDS | 35.0% | |
TGAGGAGGTAAATGATCAAA+AGG | - | chr3_2:7183475-7183494 | Msa0393150:CDS | 35.0% | |
!! | AACTTTTTGAGCATCTTGTG+GGG | + | chr3_2:7183561-7183580 | None:intergenic | 35.0% |
!! | GAACTTTTTGAGCATCTTGT+GGG | + | chr3_2:7183562-7183581 | None:intergenic | 35.0% |
!! | TGAACTTTTTGAGCATCTTG+TGG | + | chr3_2:7183563-7183582 | None:intergenic | 35.0% |
!! | GTTGCAAAAGTTGATAGCAA+AGG | - | chr3_2:7183608-7183627 | Msa0393150:intron | 35.0% |
ACAAGAGTCTTTACCTCAAA+AGG | - | chr3_2:7183670-7183689 | Msa0393150:intron | 35.0% | |
! | ATTTCTTCTTGACCCTTTTG+AGG | + | chr3_2:7183770-7183789 | None:intergenic | 35.0% |
ACATGAGTCTAAACCTCAAA+AGG | - | chr3_2:7183868-7183887 | Msa0393150:intron | 35.0% | |
CATGAGTCTAAACCTCAAAA+GGG | - | chr3_2:7183869-7183888 | Msa0393150:intron | 35.0% | |
AGAAACAGTAAAGTCACATG+TGG | - | chr3_2:7184030-7184049 | Msa0393150:intron | 35.0% | |
!! | TGGTTTTCCTTTCAAGTGTA+GGG | + | chr3_2:7184069-7184088 | None:intergenic | 35.0% |
!! | TTGGTTTTCCTTTCAAGTGT+AGG | + | chr3_2:7184070-7184089 | None:intergenic | 35.0% |
TACACTTGAAAGGAAAACCA+AGG | - | chr3_2:7184069-7184088 | Msa0393150:intron | 35.0% | |
AACATACAAAGAGAAGGGAA+AGG | - | chr3_2:7184138-7184157 | Msa0393150:intron | 35.0% | |
AAGGACAAGAATCAAAGACA+TGG | - | chr3_2:7184216-7184235 | Msa0393150:intron | 35.0% | |
! | TTTGGAAGGGTGAGAGTTTT+TGG | - | chr3_2:7183266-7183285 | Msa0393150:CDS | 40.0% |
!!! | GTTTTTGGTGAAAGATCAGC+TGG | - | chr3_2:7183281-7183300 | Msa0393150:CDS | 40.0% |
! | AACTGGTTCTTCTTCTGGTT+GGG | + | chr3_2:7183435-7183454 | None:intergenic | 40.0% |
! | TCTTCAACTGGTTCTTCTTC+TGG | + | chr3_2:7183440-7183459 | None:intergenic | 40.0% |
TTGAGGTAAAGACTCTTGTG+TGG | + | chr3_2:7183669-7183688 | None:intergenic | 40.0% | |
! | ATTTCTTCTTGGCCCTTTTG+AGG | + | chr3_2:7183728-7183747 | None:intergenic | 40.0% |
GAGACTTCAACTCAATCAGA+AGG | - | chr3_2:7183842-7183861 | Msa0393150:intron | 40.0% | |
AACAGTAAAGTCACATGTGG+CGG | - | chr3_2:7184033-7184052 | Msa0393150:intron | 40.0% | |
ATTCTTCCCCTACACTTGAA+AGG | - | chr3_2:7184059-7184078 | Msa0393150:intron | 40.0% | |
!! | GGTTTTCCTTTCAAGTGTAG+GGG | + | chr3_2:7184068-7184087 | None:intergenic | 40.0% |
AAAACCAAGGACGAAAGCAA+AGG | - | chr3_2:7184082-7184101 | Msa0393150:intron | 40.0% | |
TGGAGGAAAAGTTTCAACTG+TGG | + | chr3_2:7184113-7184132 | None:intergenic | 40.0% | |
CTGTAACCAGTTATGCAAAG+AGG | - | chr3_2:7184257-7184276 | Msa0393150:CDS | 40.0% | |
ACTGAACCTCTTTGCATAAC+TGG | + | chr3_2:7184266-7184285 | None:intergenic | 40.0% | |
ACAATTCTTGTGGTTGCACT+TGG | - | chr3_2:7184322-7184341 | Msa0393150:CDS | 40.0% | |
! | TTTGGAAGGGTGAGAGTTTT+TGG | - | chr3_2:7183266-7183285 | Msa0393150:CDS | 40.0% |
!!! | GTTTTTGGTGAAAGATCAGC+TGG | - | chr3_2:7183281-7183300 | Msa0393150:CDS | 40.0% |
! | AACTGGTTCTTCTTCTGGTT+GGG | + | chr3_2:7183435-7183454 | None:intergenic | 40.0% |
! | TCTTCAACTGGTTCTTCTTC+TGG | + | chr3_2:7183440-7183459 | None:intergenic | 40.0% |
TTGAGGTAAAGACTCTTGTG+TGG | + | chr3_2:7183669-7183688 | None:intergenic | 40.0% | |
! | ATTTCTTCTTGGCCCTTTTG+AGG | + | chr3_2:7183728-7183747 | None:intergenic | 40.0% |
GAGACTTCAACTCAATCAGA+AGG | - | chr3_2:7183842-7183861 | Msa0393150:intron | 40.0% | |
AACAGTAAAGTCACATGTGG+CGG | - | chr3_2:7184033-7184052 | Msa0393150:intron | 40.0% | |
ATTCTTCCCCTACACTTGAA+AGG | - | chr3_2:7184059-7184078 | Msa0393150:intron | 40.0% | |
!! | GGTTTTCCTTTCAAGTGTAG+GGG | + | chr3_2:7184068-7184087 | None:intergenic | 40.0% |
AAAACCAAGGACGAAAGCAA+AGG | - | chr3_2:7184082-7184101 | Msa0393150:intron | 40.0% | |
TGGAGGAAAAGTTTCAACTG+TGG | + | chr3_2:7184113-7184132 | None:intergenic | 40.0% | |
CTGTAACCAGTTATGCAAAG+AGG | - | chr3_2:7184257-7184276 | Msa0393150:CDS | 40.0% | |
ACTGAACCTCTTTGCATAAC+TGG | + | chr3_2:7184266-7184285 | None:intergenic | 40.0% | |
ACAATTCTTGTGGTTGCACT+TGG | - | chr3_2:7184322-7184341 | Msa0393150:CDS | 40.0% | |
! | ACAATGAGAAGGTGTGAGTC+TGG | + | chr3_2:7182540-7182559 | None:intergenic | 45.0% |
!! | CGCCGGTTTGATATCTAGTT+CGG | + | chr3_2:7182949-7182968 | None:intergenic | 45.0% |
! | CGTAGAGTTATAGGTATCGC+CGG | + | chr3_2:7182966-7182985 | None:intergenic | 45.0% |
CAATATGAGGTTCAACCGGT+TGG | - | chr3_2:7183049-7183068 | Msa0393150:CDS | 45.0% | |
GGGACTCTACCTGGAATATT+TGG | + | chr3_2:7183413-7183432 | None:intergenic | 45.0% | |
! | ACTGGTTCTTCTTCTGGTTG+GGG | + | chr3_2:7183434-7183453 | None:intergenic | 45.0% |
! | CAACTGGTTCTTCTTCTGGT+TGG | + | chr3_2:7183436-7183455 | None:intergenic | 45.0% |
! | CCTTGATCTTGACCCTTTTG+AGG | + | chr3_2:7183884-7183903 | None:intergenic | 45.0% |
CCTCAAAAGGGTCAAGATCA+AGG | - | chr3_2:7183881-7183900 | Msa0393150:intron | 45.0% | |
AGATCCTTTGCTTTCGTCCT+TGG | + | chr3_2:7184089-7184108 | None:intergenic | 45.0% | |
ACTGGTTACAGCTTGAGTAG+TGG | + | chr3_2:7184248-7184267 | None:intergenic | 45.0% | |
CACTGGTGCAACAATTCTTG+TGG | - | chr3_2:7184312-7184331 | Msa0393150:CDS | 45.0% | |
ACGCGAAGAACGATACTTGT+AGG | + | chr3_2:7184359-7184378 | None:intergenic | 45.0% | |
! | ACAATGAGAAGGTGTGAGTC+TGG | + | chr3_2:7182540-7182559 | None:intergenic | 45.0% |
!! | CGCCGGTTTGATATCTAGTT+CGG | + | chr3_2:7182949-7182968 | None:intergenic | 45.0% |
! | CGTAGAGTTATAGGTATCGC+CGG | + | chr3_2:7182966-7182985 | None:intergenic | 45.0% |
CAATATGAGGTTCAACCGGT+TGG | - | chr3_2:7183049-7183068 | Msa0393150:CDS | 45.0% | |
GGGACTCTACCTGGAATATT+TGG | + | chr3_2:7183413-7183432 | None:intergenic | 45.0% | |
! | ACTGGTTCTTCTTCTGGTTG+GGG | + | chr3_2:7183434-7183453 | None:intergenic | 45.0% |
! | CAACTGGTTCTTCTTCTGGT+TGG | + | chr3_2:7183436-7183455 | None:intergenic | 45.0% |
! | CCTTGATCTTGACCCTTTTG+AGG | + | chr3_2:7183884-7183903 | None:intergenic | 45.0% |
CCTCAAAAGGGTCAAGATCA+AGG | - | chr3_2:7183881-7183900 | Msa0393150:intron | 45.0% | |
AGATCCTTTGCTTTCGTCCT+TGG | + | chr3_2:7184089-7184108 | None:intergenic | 45.0% | |
ACTGGTTACAGCTTGAGTAG+TGG | + | chr3_2:7184248-7184267 | None:intergenic | 45.0% | |
CACTGGTGCAACAATTCTTG+TGG | - | chr3_2:7184312-7184331 | Msa0393150:CDS | 45.0% | |
ACGCGAAGAACGATACTTGT+AGG | + | chr3_2:7184359-7184378 | None:intergenic | 45.0% | |
GTTCAACCGGTTGGACAGTT+CGG | - | chr3_2:7183058-7183077 | Msa0393150:CDS | 50.0% | |
! | ACCCTACAGGTTTTGCACGA+GGG | - | chr3_2:7183216-7183235 | Msa0393150:CDS | 50.0% |
! | GGTTTTGCACGAGGGGATAT+TGG | - | chr3_2:7183224-7183243 | Msa0393150:CDS | 50.0% |
! | CTGGTTCTTCTTCTGGTTGG+GGG | + | chr3_2:7183433-7183452 | None:intergenic | 50.0% |
GTTCAACCGGTTGGACAGTT+CGG | - | chr3_2:7183058-7183077 | Msa0393150:CDS | 50.0% | |
! | ACCCTACAGGTTTTGCACGA+GGG | - | chr3_2:7183216-7183235 | Msa0393150:CDS | 50.0% |
! | GGTTTTGCACGAGGGGATAT+TGG | - | chr3_2:7183224-7183243 | Msa0393150:CDS | 50.0% |
! | CTGGTTCTTCTTCTGGTTGG+GGG | + | chr3_2:7183433-7183452 | None:intergenic | 50.0% |
ACCGGTTGGACAGTTCGGTT+CGG | - | chr3_2:7183063-7183082 | Msa0393150:CDS | 55.0% | |
ACCGAACCGAACTGTCCAAC+CGG | + | chr3_2:7183067-7183086 | None:intergenic | 55.0% | |
! | CACCCTACAGGTTTTGCACG+AGG | - | chr3_2:7183215-7183234 | Msa0393150:CDS | 55.0% |
CCCCTCGTGCAAAACCTGTA+GGG | + | chr3_2:7183220-7183239 | None:intergenic | 55.0% | |
! | CCCTACAGGTTTTGCACGAG+GGG | - | chr3_2:7183217-7183236 | Msa0393150:CDS | 55.0% |
TCCCCTCGTGCAAAACCTGT+AGG | + | chr3_2:7183221-7183240 | None:intergenic | 55.0% | |
ACCGGTTGGACAGTTCGGTT+CGG | - | chr3_2:7183063-7183082 | Msa0393150:CDS | 55.0% | |
ACCGAACCGAACTGTCCAAC+CGG | + | chr3_2:7183067-7183086 | None:intergenic | 55.0% | |
! | CACCCTACAGGTTTTGCACG+AGG | - | chr3_2:7183215-7183234 | Msa0393150:CDS | 55.0% |
CCCCTCGTGCAAAACCTGTA+GGG | + | chr3_2:7183220-7183239 | None:intergenic | 55.0% | |
! | CCCTACAGGTTTTGCACGAG+GGG | - | chr3_2:7183217-7183236 | Msa0393150:CDS | 55.0% |
TCCCCTCGTGCAAAACCTGT+AGG | + | chr3_2:7183221-7183240 | None:intergenic | 55.0% | |
TCTGGTTGGGGGACTCTACC+TGG | + | chr3_2:7183422-7183441 | None:intergenic | 60.0% | |
TCTGGTTGGGGGACTCTACC+TGG | + | chr3_2:7183422-7183441 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 7182439 | 7184387 | 7182439 | ID=Msa0393150;Name=Msa0393150 |
chr3_2 | mRNA | 7182439 | 7184387 | 7182439 | ID=Msa0393150-mRNA-1;Parent=Msa0393150;Name=Msa0393150-mRNA-1;_AED=0.01;_eAED=0.01;_QI=35|1|0.5|1|1|1|2|0|420 |
chr3_2 | exon | 7182439 | 7183601 | 7182439 | ID=Msa0393150-mRNA-1:exon:1758;Parent=Msa0393150-mRNA-1 |
chr3_2 | exon | 7184253 | 7184387 | 7184253 | ID=Msa0393150-mRNA-1:exon:1757;Parent=Msa0393150-mRNA-1 |
chr3_2 | five_prime_UTR | 7184353 | 7184387 | 7184353 | ID=Msa0393150-mRNA-1:five_prime_utr;Parent=Msa0393150-mRNA-1 |
chr3_2 | CDS | 7184253 | 7184352 | 7184253 | ID=Msa0393150-mRNA-1:cds;Parent=Msa0393150-mRNA-1 |
chr3_2 | CDS | 7182439 | 7183601 | 7182439 | ID=Msa0393150-mRNA-1:cds;Parent=Msa0393150-mRNA-1 |
Gene Sequence |
Protein sequence |