AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0393150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0393150 MtrunA17_Chr3g0078491 86.730 422 31 4 1 420 1 399 0.0 687
Msa0393150 MtrunA17_Chr8g0356011 27.506 429 249 17 9 416 24 411 3.21e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 59 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCAACTGGTTCTTCTTC+TGG 0.192285 3_2:+7183367 None:intergenic
TGTGATATTGGCAATATTAA+AGG 0.196479 3_2:-7183451 Msa0393150:CDS
GGGACTCTACCTGGAATATT+TGG 0.199534 3_2:+7183394 None:intergenic
AACTGGTTCTTCTTCTGGTT+GGG 0.200791 3_2:+7183372 None:intergenic
TTACTTTCAACATTTGATTT+AGG 0.203987 3_2:+7183280 None:intergenic
GCTAAAGTTGAGTATGATTT+TGG 0.225786 3_2:-7183556 Msa0393150:CDS
GTTCCATCACATTGTGATAT+TGG 0.249319 3_2:-7183463 Msa0393150:CDS
ACTGAACCTCTTTGCATAAC+TGG 0.257207 3_2:+7182541 None:intergenic
GATCAGCTGGATCAAATAAA+AGG 0.294691 3_2:-7183510 Msa0393150:CDS
AGATCCTTTGCTTTCGTCCT+TGG 0.309842 3_2:+7182718 None:intergenic
AAAAGAGTCTTTACCTCAAA+AGG 0.312680 3_2:-7183050 Msa0393150:CDS
GAAATGATCAATGATAAATT+TGG 0.327006 3_2:-7182644 Msa0393150:CDS
AAAGCAACCATAAGAAAATA+TGG 0.331016 3_2:-7184349 Msa0393150:exon
AAGTGTAAAAGATGAGAATA+AGG 0.339593 3_2:-7182849 Msa0393150:CDS
CAACTGGTTCTTCTTCTGGT+TGG 0.345411 3_2:+7183371 None:intergenic
AAAAGAGTCTTTACCTCAAA+AGG 0.355490 3_2:-7183092 Msa0393150:CDS
ACTGGTTCTTCTTCTGGTTG+GGG 0.391074 3_2:+7183373 None:intergenic
CTCATTGTTCAAATTCCTGA+TGG 0.397045 3_2:-7184252 Msa0393150:intron
ACATGAGTCTAAACCTCAAA+AGG 0.411758 3_2:-7182936 Msa0393150:CDS
ACGCGAAGAACGATACTTGT+AGG 0.421266 3_2:+7182448 None:intergenic
ACAAGAGTCTTTACCTCAAA+AGG 0.426442 3_2:-7183134 Msa0393150:CDS
CTTGATACTTTACATTGAAA+CGG 0.443963 3_2:+7183485 None:intergenic
AGTTGCAAAAGTTGAAAGTA+AGG 0.451119 3_2:-7182999 Msa0393150:CDS
ATCACAATGCCAAATATTCC+AGG 0.452545 3_2:-7183403 Msa0393150:CDS
AATATTAAAGGTAAGATTGA+TGG 0.465846 3_2:-7183439 Msa0393150:CDS
CCTCAAAAGGGTCAAGATCA+AGG 0.469599 3_2:-7182923 Msa0393150:CDS
TGAGGAGGTAAATGATCAAA+AGG 0.474792 3_2:-7183329 Msa0393150:CDS
ACAATGAGAAGGTGTGAGTC+TGG 0.480630 3_2:+7184267 None:intergenic
TGAGAATAAGGAAAAGCAAA+TGG 0.489525 3_2:-7182837 Msa0393150:CDS
ACAATTCTTGTGGTTGCACT+TGG 0.497082 3_2:-7182482 Msa0393150:CDS
CTGGTTCTTCTTCTGGTTGG+GGG 0.510790 3_2:+7183374 None:intergenic
GGTTGTAAAAGAAGAAACTA+AGG 0.515240 3_2:-7182816 Msa0393150:CDS
TCGTTCTTCGCGTAGAGCAT+AGG 0.518943 3_2:-7182438 None:intergenic
ATTCTTCCCCTACACTTGAA+AGG 0.537484 3_2:-7182745 Msa0393150:CDS
AAAGAGTCTTTACCTCAAAA+GGG 0.542957 3_2:-7183049 Msa0393150:CDS
AAAGAGTCTTTACCTCAAAA+GGG 0.558710 3_2:-7183091 Msa0393150:CDS
AATGAAAACATACAAAGAGA+AGG 0.559419 3_2:-7182672 Msa0393150:CDS
ATGAAAACATACAAAGAGAA+GGG 0.576008 3_2:-7182671 Msa0393150:CDS
TTGAGGTAAAGACTCTTGTG+TGG 0.578109 3_2:+7183138 None:intergenic
CTGTAACCAGTTATGCAAAG+AGG 0.578436 3_2:-7182547 Msa0393150:CDS
CATGAGTCTAAACCTCAAAA+GGG 0.580915 3_2:-7182935 Msa0393150:CDS
CAGGAATTTGAACAATGAGA+AGG 0.587809 3_2:+7184256 None:intergenic
TTCGTAGTCATATGATTGCA+AGG 0.590913 3_2:+7184323 None:intergenic
AAAACCAAGGACGAAAGCAA+AGG 0.593213 3_2:-7182722 Msa0393150:CDS
AAATAATAATAAAGCTGAGG+AGG 0.594847 3_2:-7183344 Msa0393150:CDS
TTGCCAATATCACAATGTGA+TGG 0.596036 3_2:+7183460 None:intergenic
GTTGCAAAAGTTGATAGCAA+AGG 0.598881 3_2:-7183196 Msa0393150:CDS
ACTGGTTACAGCTTGAGTAG+TGG 0.610976 3_2:+7182559 None:intergenic
AACAGTAAAGTCACATGTGG+CGG 0.614000 3_2:-7182771 Msa0393150:CDS
CACTGGTGCAACAATTCTTG+TGG 0.614455 3_2:-7182492 Msa0393150:CDS
AGAAAATAATAATAAAGCTG+AGG 0.616804 3_2:-7183347 Msa0393150:CDS
AAACAAAAGCTAATATACAC+TGG 0.628935 3_2:-7182509 Msa0393150:CDS
GAGACTTCAACTCAATCAGA+AGG 0.630544 3_2:-7182962 Msa0393150:CDS
AACATACAAAGAGAAGGGAA+AGG 0.642709 3_2:-7182666 Msa0393150:CDS
AAAAGATTCTTGATTCAACA+AGG 0.644606 3_2:-7182607 Msa0393150:CDS
AGAAACAGTAAAGTCACATG+TGG 0.668295 3_2:-7182774 Msa0393150:CDS
TGGAGGAAAAGTTTCAACTG+TGG 0.675102 3_2:+7182694 None:intergenic
AAGGACAAGAATCAAAGACA+TGG 0.679753 3_2:-7182588 Msa0393150:CDS
TACACTTGAAAGGAAAACCA+AGG 0.691297 3_2:-7182735 Msa0393150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTGTTTATTTATTTTTTT+TGG - chr3_2:7182620-7182639 Msa0393150:CDS 10.0%
!! AAAAAAAAAACTACTATAAA+AGG + chr3_2:7183125-7183144 None:intergenic 10.0%
!! TTAAATAGTAATATTTAACA+GGG - chr3_2:7183157-7183176 Msa0393150:CDS 10.0%
!!! TTGTGTTTATTTATTTTTTT+TGG - chr3_2:7182620-7182639 Msa0393150:CDS 10.0%
!! AAAAAAAAAACTACTATAAA+AGG + chr3_2:7183125-7183144 None:intergenic 10.0%
!! TTAAATAGTAATATTTAACA+GGG - chr3_2:7183157-7183176 Msa0393150:CDS 10.0%
!!! TGTGTAATTTAAAGTTAAAT+AGG + chr3_2:7182799-7182818 None:intergenic 15.0%
!! ATTACACAACATATTAAATT+TGG - chr3_2:7182811-7182830 Msa0393150:CDS 15.0%
!! CTTAAATAGTAATATTTAAC+AGG - chr3_2:7183156-7183175 Msa0393150:CDS 15.0%
!!! TTATTATTATTTTCTTCAAC+TGG + chr3_2:7183452-7183471 None:intergenic 15.0%
!!! TGTGTAATTTAAAGTTAAAT+AGG + chr3_2:7182799-7182818 None:intergenic 15.0%
!! ATTACACAACATATTAAATT+TGG - chr3_2:7182811-7182830 Msa0393150:CDS 15.0%
!! CTTAAATAGTAATATTTAAC+AGG - chr3_2:7183156-7183175 Msa0393150:CDS 15.0%
!!! TTATTATTATTTTCTTCAAC+TGG + chr3_2:7183452-7183471 None:intergenic 15.0%
!!! GTATTCTTTTTTTCAATTAC+TGG + chr3_2:7182516-7182535 None:intergenic 20.0%
!!! CTTTTTTCCTTTCTTTATAA+AGG - chr3_2:7182672-7182691 Msa0393150:CDS 20.0%
!! TTAAGAACCTTTATAAAGAA+AGG + chr3_2:7182682-7182701 None:intergenic 20.0%
!! ATAAAAATTCTGATAAGCAA+TGG + chr3_2:7182763-7182782 None:intergenic 20.0%
!! AATATTAAAGGTAAGATTGA+TGG - chr3_2:7183365-7183384 Msa0393150:CDS 20.0%
!! AGAAAATAATAATAAAGCTG+AGG - chr3_2:7183457-7183476 Msa0393150:CDS 20.0%
!!! TTACTTTCAACATTTGATTT+AGG + chr3_2:7183527-7183546 None:intergenic 20.0%
!! GAAATGATCAATGATAAATT+TGG - chr3_2:7184160-7184179 Msa0393150:intron 20.0%
!!! GTATTCTTTTTTTCAATTAC+TGG + chr3_2:7182516-7182535 None:intergenic 20.0%
!!! CTTTTTTCCTTTCTTTATAA+AGG - chr3_2:7182672-7182691 Msa0393150:CDS 20.0%
!! TTAAGAACCTTTATAAAGAA+AGG + chr3_2:7182682-7182701 None:intergenic 20.0%
!! ATAAAAATTCTGATAAGCAA+TGG + chr3_2:7182763-7182782 None:intergenic 20.0%
!! AATATTAAAGGTAAGATTGA+TGG - chr3_2:7183365-7183384 Msa0393150:CDS 20.0%
!! AGAAAATAATAATAAAGCTG+AGG - chr3_2:7183457-7183476 Msa0393150:CDS 20.0%
!!! TTACTTTCAACATTTGATTT+AGG + chr3_2:7183527-7183546 None:intergenic 20.0%
!! GAAATGATCAATGATAAATT+TGG - chr3_2:7184160-7184179 Msa0393150:intron 20.0%
! AAAGCAACCATAAGAAAATA+TGG - chr3_2:7182455-7182474 Msa0393150:CDS 25.0%
! GTTAAATAGGTAAAAGTCTT+TGG + chr3_2:7182786-7182805 None:intergenic 25.0%
!!! TAGTTCGGTTTTTAAAACAT+TGG + chr3_2:7182934-7182953 None:intergenic 25.0%
! CTTGATACTTTACATTGAAA+CGG + chr3_2:7183322-7183341 None:intergenic 25.0%
! TGTGATATTGGCAATATTAA+AGG - chr3_2:7183353-7183372 Msa0393150:CDS 25.0%
! AAATAATAATAAAGCTGAGG+AGG - chr3_2:7183460-7183479 Msa0393150:CDS 25.0%
!!! CTTTTTGAGAAATTTCTTCT+TGG + chr3_2:7183739-7183758 None:intergenic 25.0%
! AAGTGTAAAAGATGAGAATA+AGG - chr3_2:7183955-7183974 Msa0393150:intron 25.0%
!! TTCTCTTTGTATGTTTTCAT+TGG + chr3_2:7184133-7184152 None:intergenic 25.0%
! AATGAAAACATACAAAGAGA+AGG - chr3_2:7184132-7184151 Msa0393150:intron 25.0%
! ATGAAAACATACAAAGAGAA+GGG - chr3_2:7184133-7184152 Msa0393150:intron 25.0%
! AAAAGATTCTTGATTCAACA+AGG - chr3_2:7184197-7184216 Msa0393150:intron 25.0%
! AAACAAAAGCTAATATACAC+TGG - chr3_2:7184295-7184314 Msa0393150:CDS 25.0%
! AAAGCAACCATAAGAAAATA+TGG - chr3_2:7182455-7182474 Msa0393150:CDS 25.0%
! GTTAAATAGGTAAAAGTCTT+TGG + chr3_2:7182786-7182805 None:intergenic 25.0%
!!! TAGTTCGGTTTTTAAAACAT+TGG + chr3_2:7182934-7182953 None:intergenic 25.0%
! CTTGATACTTTACATTGAAA+CGG + chr3_2:7183322-7183341 None:intergenic 25.0%
! TGTGATATTGGCAATATTAA+AGG - chr3_2:7183353-7183372 Msa0393150:CDS 25.0%
! AAATAATAATAAAGCTGAGG+AGG - chr3_2:7183460-7183479 Msa0393150:CDS 25.0%
!!! CTTTTTGAGAAATTTCTTCT+TGG + chr3_2:7183739-7183758 None:intergenic 25.0%
! AAGTGTAAAAGATGAGAATA+AGG - chr3_2:7183955-7183974 Msa0393150:intron 25.0%
!! TTCTCTTTGTATGTTTTCAT+TGG + chr3_2:7184133-7184152 None:intergenic 25.0%
! AATGAAAACATACAAAGAGA+AGG - chr3_2:7184132-7184151 Msa0393150:intron 25.0%
! ATGAAAACATACAAAGAGAA+GGG - chr3_2:7184133-7184152 Msa0393150:intron 25.0%
! AAAAGATTCTTGATTCAACA+AGG - chr3_2:7184197-7184216 Msa0393150:intron 25.0%
! AAACAAAAGCTAATATACAC+TGG - chr3_2:7184295-7184314 Msa0393150:CDS 25.0%
! AAGGTAGCCATATTTTCTTA+TGG + chr3_2:7182465-7182484 None:intergenic 30.0%
CAAGAACATATGAATAGAAG+TGG + chr3_2:7182603-7182622 None:intergenic 30.0%
AAATTCTGATAAGCAATGGA+AGG + chr3_2:7182759-7182778 None:intergenic 30.0%
TTGAACTTACGTAGAGTTAT+AGG + chr3_2:7182975-7182994 None:intergenic 30.0%
!!! ATATTGCTTTTTACTACGGT+TGG + chr3_2:7183035-7183054 None:intergenic 30.0%
!!! CCTCATATTGCTTTTTACTA+CGG + chr3_2:7183039-7183058 None:intergenic 30.0%
TATAAAAGGCTAACATCTGT+TGG + chr3_2:7183111-7183130 None:intergenic 30.0%
AATTATTTAATGCACCCTAC+AGG - chr3_2:7183203-7183222 Msa0393150:CDS 30.0%
! GCTAAAGTTGAGTATGATTT+TGG - chr3_2:7183248-7183267 Msa0393150:CDS 30.0%
! AAGTTGAGTATGATTTTGGA+AGG - chr3_2:7183252-7183271 Msa0393150:CDS 30.0%
!! AGTTGAGTATGATTTTGGAA+GGG - chr3_2:7183253-7183272 Msa0393150:CDS 30.0%
! ATTTCTTCTTGATCCTTTTG+AGG + chr3_2:7183686-7183705 None:intergenic 30.0%
AAAAGAGTCTTTACCTCAAA+AGG - chr3_2:7183712-7183731 Msa0393150:intron 30.0%
AAAGAGTCTTTACCTCAAAA+GGG - chr3_2:7183713-7183732 Msa0393150:intron 30.0%
AAAAGAGTCTTTACCTCAAA+AGG - chr3_2:7183712-7183731 Msa0393150:intron 30.0%
AAAGAGTCTTTACCTCAAAA+GGG - chr3_2:7183713-7183732 Msa0393150:intron 30.0%
AGTTGCAAAAGTTGAAAGTA+AGG - chr3_2:7183805-7183824 Msa0393150:intron 30.0%
! TTTGCATCTTTTGTATCTGT+AGG + chr3_2:7183920-7183939 None:intergenic 30.0%
TGAGAATAAGGAAAAGCAAA+TGG - chr3_2:7183967-7183986 Msa0393150:intron 30.0%
GGTTGTAAAAGAAGAAACTA+AGG - chr3_2:7183988-7184007 Msa0393150:intron 30.0%
! TCTTTGTATGTTTTCATTGG+AGG + chr3_2:7184130-7184149 None:intergenic 30.0%
! AAGGTAGCCATATTTTCTTA+TGG + chr3_2:7182465-7182484 None:intergenic 30.0%
CAAGAACATATGAATAGAAG+TGG + chr3_2:7182603-7182622 None:intergenic 30.0%
AAATTCTGATAAGCAATGGA+AGG + chr3_2:7182759-7182778 None:intergenic 30.0%
TTGAACTTACGTAGAGTTAT+AGG + chr3_2:7182975-7182994 None:intergenic 30.0%
!!! ATATTGCTTTTTACTACGGT+TGG + chr3_2:7183035-7183054 None:intergenic 30.0%
!!! CCTCATATTGCTTTTTACTA+CGG + chr3_2:7183039-7183058 None:intergenic 30.0%
TATAAAAGGCTAACATCTGT+TGG + chr3_2:7183111-7183130 None:intergenic 30.0%
AATTATTTAATGCACCCTAC+AGG - chr3_2:7183203-7183222 Msa0393150:CDS 30.0%
! GCTAAAGTTGAGTATGATTT+TGG - chr3_2:7183248-7183267 Msa0393150:CDS 30.0%
! AAGTTGAGTATGATTTTGGA+AGG - chr3_2:7183252-7183271 Msa0393150:CDS 30.0%
!! AGTTGAGTATGATTTTGGAA+GGG - chr3_2:7183253-7183272 Msa0393150:CDS 30.0%
! ATTTCTTCTTGATCCTTTTG+AGG + chr3_2:7183686-7183705 None:intergenic 30.0%
AAAAGAGTCTTTACCTCAAA+AGG - chr3_2:7183712-7183731 Msa0393150:intron 30.0%
AAAGAGTCTTTACCTCAAAA+GGG - chr3_2:7183713-7183732 Msa0393150:intron 30.0%
AAAAGAGTCTTTACCTCAAA+AGG - chr3_2:7183712-7183731 Msa0393150:intron 30.0%
AAAGAGTCTTTACCTCAAAA+GGG - chr3_2:7183713-7183732 Msa0393150:intron 30.0%
AGTTGCAAAAGTTGAAAGTA+AGG - chr3_2:7183805-7183824 Msa0393150:intron 30.0%
! TTTGCATCTTTTGTATCTGT+AGG + chr3_2:7183920-7183939 None:intergenic 30.0%
TGAGAATAAGGAAAAGCAAA+TGG - chr3_2:7183967-7183986 Msa0393150:intron 30.0%
GGTTGTAAAAGAAGAAACTA+AGG - chr3_2:7183988-7184007 Msa0393150:intron 30.0%
! TCTTTGTATGTTTTCATTGG+AGG + chr3_2:7184130-7184149 None:intergenic 30.0%
TTCGTAGTCATATGATTGCA+AGG + chr3_2:7182484-7182503 None:intergenic 35.0%
CAGGAATTTGAACAATGAGA+AGG + chr3_2:7182551-7182570 None:intergenic 35.0%
CTCATTGTTCAAATTCCTGA+TGG - chr3_2:7182552-7182571 Msa0393150:CDS 35.0%
!! CAAATTCCTGATGGTTTGTT+TGG - chr3_2:7182561-7182580 Msa0393150:CDS 35.0%
GTTAAACCAAACAAACCATC+AGG + chr3_2:7182570-7182589 None:intergenic 35.0%
AACCGAACTAGATATCAAAC+CGG - chr3_2:7182944-7182963 Msa0393150:CDS 35.0%
GCTCTTGTTCGAATGTTATA+AGG + chr3_2:7183001-7183020 None:intergenic 35.0%
! TTTTTACTACGGTTGGATTC+TGG + chr3_2:7183028-7183047 None:intergenic 35.0%
CCGTAGTAAAAAGCAATATG+AGG - chr3_2:7183036-7183055 Msa0393150:CDS 35.0%
AAAGCAATATGAGGTTCAAC+CGG - chr3_2:7183045-7183064 Msa0393150:CDS 35.0%
!! GGTTCGGTTTTTGAAAACAT+TGG - chr3_2:7183079-7183098 Msa0393150:CDS 35.0%
GATCAGCTGGATCAAATAAA+AGG - chr3_2:7183294-7183313 Msa0393150:CDS 35.0%
GTTCCATCACATTGTGATAT+TGG - chr3_2:7183341-7183360 Msa0393150:CDS 35.0%
TTGCCAATATCACAATGTGA+TGG + chr3_2:7183347-7183366 None:intergenic 35.0%
ATCACAATGCCAAATATTCC+AGG - chr3_2:7183401-7183420 Msa0393150:CDS 35.0%
TGAGGAGGTAAATGATCAAA+AGG - chr3_2:7183475-7183494 Msa0393150:CDS 35.0%
!! AACTTTTTGAGCATCTTGTG+GGG + chr3_2:7183561-7183580 None:intergenic 35.0%
!! GAACTTTTTGAGCATCTTGT+GGG + chr3_2:7183562-7183581 None:intergenic 35.0%
!! TGAACTTTTTGAGCATCTTG+TGG + chr3_2:7183563-7183582 None:intergenic 35.0%
!! GTTGCAAAAGTTGATAGCAA+AGG - chr3_2:7183608-7183627 Msa0393150:intron 35.0%
ACAAGAGTCTTTACCTCAAA+AGG - chr3_2:7183670-7183689 Msa0393150:intron 35.0%
! ATTTCTTCTTGACCCTTTTG+AGG + chr3_2:7183770-7183789 None:intergenic 35.0%
ACATGAGTCTAAACCTCAAA+AGG - chr3_2:7183868-7183887 Msa0393150:intron 35.0%
CATGAGTCTAAACCTCAAAA+GGG - chr3_2:7183869-7183888 Msa0393150:intron 35.0%
AGAAACAGTAAAGTCACATG+TGG - chr3_2:7184030-7184049 Msa0393150:intron 35.0%
!! TGGTTTTCCTTTCAAGTGTA+GGG + chr3_2:7184069-7184088 None:intergenic 35.0%
!! TTGGTTTTCCTTTCAAGTGT+AGG + chr3_2:7184070-7184089 None:intergenic 35.0%
TACACTTGAAAGGAAAACCA+AGG - chr3_2:7184069-7184088 Msa0393150:intron 35.0%
AACATACAAAGAGAAGGGAA+AGG - chr3_2:7184138-7184157 Msa0393150:intron 35.0%
AAGGACAAGAATCAAAGACA+TGG - chr3_2:7184216-7184235 Msa0393150:intron 35.0%
TTCGTAGTCATATGATTGCA+AGG + chr3_2:7182484-7182503 None:intergenic 35.0%
CAGGAATTTGAACAATGAGA+AGG + chr3_2:7182551-7182570 None:intergenic 35.0%
CTCATTGTTCAAATTCCTGA+TGG - chr3_2:7182552-7182571 Msa0393150:CDS 35.0%
!! CAAATTCCTGATGGTTTGTT+TGG - chr3_2:7182561-7182580 Msa0393150:CDS 35.0%
GTTAAACCAAACAAACCATC+AGG + chr3_2:7182570-7182589 None:intergenic 35.0%
AACCGAACTAGATATCAAAC+CGG - chr3_2:7182944-7182963 Msa0393150:CDS 35.0%
GCTCTTGTTCGAATGTTATA+AGG + chr3_2:7183001-7183020 None:intergenic 35.0%
! TTTTTACTACGGTTGGATTC+TGG + chr3_2:7183028-7183047 None:intergenic 35.0%
CCGTAGTAAAAAGCAATATG+AGG - chr3_2:7183036-7183055 Msa0393150:CDS 35.0%
AAAGCAATATGAGGTTCAAC+CGG - chr3_2:7183045-7183064 Msa0393150:CDS 35.0%
!! GGTTCGGTTTTTGAAAACAT+TGG - chr3_2:7183079-7183098 Msa0393150:CDS 35.0%
GATCAGCTGGATCAAATAAA+AGG - chr3_2:7183294-7183313 Msa0393150:CDS 35.0%
GTTCCATCACATTGTGATAT+TGG - chr3_2:7183341-7183360 Msa0393150:CDS 35.0%
TTGCCAATATCACAATGTGA+TGG + chr3_2:7183347-7183366 None:intergenic 35.0%
ATCACAATGCCAAATATTCC+AGG - chr3_2:7183401-7183420 Msa0393150:CDS 35.0%
TGAGGAGGTAAATGATCAAA+AGG - chr3_2:7183475-7183494 Msa0393150:CDS 35.0%
!! AACTTTTTGAGCATCTTGTG+GGG + chr3_2:7183561-7183580 None:intergenic 35.0%
!! GAACTTTTTGAGCATCTTGT+GGG + chr3_2:7183562-7183581 None:intergenic 35.0%
!! TGAACTTTTTGAGCATCTTG+TGG + chr3_2:7183563-7183582 None:intergenic 35.0%
!! GTTGCAAAAGTTGATAGCAA+AGG - chr3_2:7183608-7183627 Msa0393150:intron 35.0%
ACAAGAGTCTTTACCTCAAA+AGG - chr3_2:7183670-7183689 Msa0393150:intron 35.0%
! ATTTCTTCTTGACCCTTTTG+AGG + chr3_2:7183770-7183789 None:intergenic 35.0%
ACATGAGTCTAAACCTCAAA+AGG - chr3_2:7183868-7183887 Msa0393150:intron 35.0%
CATGAGTCTAAACCTCAAAA+GGG - chr3_2:7183869-7183888 Msa0393150:intron 35.0%
AGAAACAGTAAAGTCACATG+TGG - chr3_2:7184030-7184049 Msa0393150:intron 35.0%
!! TGGTTTTCCTTTCAAGTGTA+GGG + chr3_2:7184069-7184088 None:intergenic 35.0%
!! TTGGTTTTCCTTTCAAGTGT+AGG + chr3_2:7184070-7184089 None:intergenic 35.0%
TACACTTGAAAGGAAAACCA+AGG - chr3_2:7184069-7184088 Msa0393150:intron 35.0%
AACATACAAAGAGAAGGGAA+AGG - chr3_2:7184138-7184157 Msa0393150:intron 35.0%
AAGGACAAGAATCAAAGACA+TGG - chr3_2:7184216-7184235 Msa0393150:intron 35.0%
! TTTGGAAGGGTGAGAGTTTT+TGG - chr3_2:7183266-7183285 Msa0393150:CDS 40.0%
!!! GTTTTTGGTGAAAGATCAGC+TGG - chr3_2:7183281-7183300 Msa0393150:CDS 40.0%
! AACTGGTTCTTCTTCTGGTT+GGG + chr3_2:7183435-7183454 None:intergenic 40.0%
! TCTTCAACTGGTTCTTCTTC+TGG + chr3_2:7183440-7183459 None:intergenic 40.0%
TTGAGGTAAAGACTCTTGTG+TGG + chr3_2:7183669-7183688 None:intergenic 40.0%
! ATTTCTTCTTGGCCCTTTTG+AGG + chr3_2:7183728-7183747 None:intergenic 40.0%
GAGACTTCAACTCAATCAGA+AGG - chr3_2:7183842-7183861 Msa0393150:intron 40.0%
AACAGTAAAGTCACATGTGG+CGG - chr3_2:7184033-7184052 Msa0393150:intron 40.0%
ATTCTTCCCCTACACTTGAA+AGG - chr3_2:7184059-7184078 Msa0393150:intron 40.0%
!! GGTTTTCCTTTCAAGTGTAG+GGG + chr3_2:7184068-7184087 None:intergenic 40.0%
AAAACCAAGGACGAAAGCAA+AGG - chr3_2:7184082-7184101 Msa0393150:intron 40.0%
TGGAGGAAAAGTTTCAACTG+TGG + chr3_2:7184113-7184132 None:intergenic 40.0%
CTGTAACCAGTTATGCAAAG+AGG - chr3_2:7184257-7184276 Msa0393150:CDS 40.0%
ACTGAACCTCTTTGCATAAC+TGG + chr3_2:7184266-7184285 None:intergenic 40.0%
ACAATTCTTGTGGTTGCACT+TGG - chr3_2:7184322-7184341 Msa0393150:CDS 40.0%
! TTTGGAAGGGTGAGAGTTTT+TGG - chr3_2:7183266-7183285 Msa0393150:CDS 40.0%
!!! GTTTTTGGTGAAAGATCAGC+TGG - chr3_2:7183281-7183300 Msa0393150:CDS 40.0%
! AACTGGTTCTTCTTCTGGTT+GGG + chr3_2:7183435-7183454 None:intergenic 40.0%
! TCTTCAACTGGTTCTTCTTC+TGG + chr3_2:7183440-7183459 None:intergenic 40.0%
TTGAGGTAAAGACTCTTGTG+TGG + chr3_2:7183669-7183688 None:intergenic 40.0%
! ATTTCTTCTTGGCCCTTTTG+AGG + chr3_2:7183728-7183747 None:intergenic 40.0%
GAGACTTCAACTCAATCAGA+AGG - chr3_2:7183842-7183861 Msa0393150:intron 40.0%
AACAGTAAAGTCACATGTGG+CGG - chr3_2:7184033-7184052 Msa0393150:intron 40.0%
ATTCTTCCCCTACACTTGAA+AGG - chr3_2:7184059-7184078 Msa0393150:intron 40.0%
!! GGTTTTCCTTTCAAGTGTAG+GGG + chr3_2:7184068-7184087 None:intergenic 40.0%
AAAACCAAGGACGAAAGCAA+AGG - chr3_2:7184082-7184101 Msa0393150:intron 40.0%
TGGAGGAAAAGTTTCAACTG+TGG + chr3_2:7184113-7184132 None:intergenic 40.0%
CTGTAACCAGTTATGCAAAG+AGG - chr3_2:7184257-7184276 Msa0393150:CDS 40.0%
ACTGAACCTCTTTGCATAAC+TGG + chr3_2:7184266-7184285 None:intergenic 40.0%
ACAATTCTTGTGGTTGCACT+TGG - chr3_2:7184322-7184341 Msa0393150:CDS 40.0%
! ACAATGAGAAGGTGTGAGTC+TGG + chr3_2:7182540-7182559 None:intergenic 45.0%
!! CGCCGGTTTGATATCTAGTT+CGG + chr3_2:7182949-7182968 None:intergenic 45.0%
! CGTAGAGTTATAGGTATCGC+CGG + chr3_2:7182966-7182985 None:intergenic 45.0%
CAATATGAGGTTCAACCGGT+TGG - chr3_2:7183049-7183068 Msa0393150:CDS 45.0%
GGGACTCTACCTGGAATATT+TGG + chr3_2:7183413-7183432 None:intergenic 45.0%
! ACTGGTTCTTCTTCTGGTTG+GGG + chr3_2:7183434-7183453 None:intergenic 45.0%
! CAACTGGTTCTTCTTCTGGT+TGG + chr3_2:7183436-7183455 None:intergenic 45.0%
! CCTTGATCTTGACCCTTTTG+AGG + chr3_2:7183884-7183903 None:intergenic 45.0%
CCTCAAAAGGGTCAAGATCA+AGG - chr3_2:7183881-7183900 Msa0393150:intron 45.0%
AGATCCTTTGCTTTCGTCCT+TGG + chr3_2:7184089-7184108 None:intergenic 45.0%
ACTGGTTACAGCTTGAGTAG+TGG + chr3_2:7184248-7184267 None:intergenic 45.0%
CACTGGTGCAACAATTCTTG+TGG - chr3_2:7184312-7184331 Msa0393150:CDS 45.0%
ACGCGAAGAACGATACTTGT+AGG + chr3_2:7184359-7184378 None:intergenic 45.0%
! ACAATGAGAAGGTGTGAGTC+TGG + chr3_2:7182540-7182559 None:intergenic 45.0%
!! CGCCGGTTTGATATCTAGTT+CGG + chr3_2:7182949-7182968 None:intergenic 45.0%
! CGTAGAGTTATAGGTATCGC+CGG + chr3_2:7182966-7182985 None:intergenic 45.0%
CAATATGAGGTTCAACCGGT+TGG - chr3_2:7183049-7183068 Msa0393150:CDS 45.0%
GGGACTCTACCTGGAATATT+TGG + chr3_2:7183413-7183432 None:intergenic 45.0%
! ACTGGTTCTTCTTCTGGTTG+GGG + chr3_2:7183434-7183453 None:intergenic 45.0%
! CAACTGGTTCTTCTTCTGGT+TGG + chr3_2:7183436-7183455 None:intergenic 45.0%
! CCTTGATCTTGACCCTTTTG+AGG + chr3_2:7183884-7183903 None:intergenic 45.0%
CCTCAAAAGGGTCAAGATCA+AGG - chr3_2:7183881-7183900 Msa0393150:intron 45.0%
AGATCCTTTGCTTTCGTCCT+TGG + chr3_2:7184089-7184108 None:intergenic 45.0%
ACTGGTTACAGCTTGAGTAG+TGG + chr3_2:7184248-7184267 None:intergenic 45.0%
CACTGGTGCAACAATTCTTG+TGG - chr3_2:7184312-7184331 Msa0393150:CDS 45.0%
ACGCGAAGAACGATACTTGT+AGG + chr3_2:7184359-7184378 None:intergenic 45.0%
GTTCAACCGGTTGGACAGTT+CGG - chr3_2:7183058-7183077 Msa0393150:CDS 50.0%
! ACCCTACAGGTTTTGCACGA+GGG - chr3_2:7183216-7183235 Msa0393150:CDS 50.0%
! GGTTTTGCACGAGGGGATAT+TGG - chr3_2:7183224-7183243 Msa0393150:CDS 50.0%
! CTGGTTCTTCTTCTGGTTGG+GGG + chr3_2:7183433-7183452 None:intergenic 50.0%
GTTCAACCGGTTGGACAGTT+CGG - chr3_2:7183058-7183077 Msa0393150:CDS 50.0%
! ACCCTACAGGTTTTGCACGA+GGG - chr3_2:7183216-7183235 Msa0393150:CDS 50.0%
! GGTTTTGCACGAGGGGATAT+TGG - chr3_2:7183224-7183243 Msa0393150:CDS 50.0%
! CTGGTTCTTCTTCTGGTTGG+GGG + chr3_2:7183433-7183452 None:intergenic 50.0%
ACCGGTTGGACAGTTCGGTT+CGG - chr3_2:7183063-7183082 Msa0393150:CDS 55.0%
ACCGAACCGAACTGTCCAAC+CGG + chr3_2:7183067-7183086 None:intergenic 55.0%
! CACCCTACAGGTTTTGCACG+AGG - chr3_2:7183215-7183234 Msa0393150:CDS 55.0%
CCCCTCGTGCAAAACCTGTA+GGG + chr3_2:7183220-7183239 None:intergenic 55.0%
! CCCTACAGGTTTTGCACGAG+GGG - chr3_2:7183217-7183236 Msa0393150:CDS 55.0%
TCCCCTCGTGCAAAACCTGT+AGG + chr3_2:7183221-7183240 None:intergenic 55.0%
ACCGGTTGGACAGTTCGGTT+CGG - chr3_2:7183063-7183082 Msa0393150:CDS 55.0%
ACCGAACCGAACTGTCCAAC+CGG + chr3_2:7183067-7183086 None:intergenic 55.0%
! CACCCTACAGGTTTTGCACG+AGG - chr3_2:7183215-7183234 Msa0393150:CDS 55.0%
CCCCTCGTGCAAAACCTGTA+GGG + chr3_2:7183220-7183239 None:intergenic 55.0%
! CCCTACAGGTTTTGCACGAG+GGG - chr3_2:7183217-7183236 Msa0393150:CDS 55.0%
TCCCCTCGTGCAAAACCTGT+AGG + chr3_2:7183221-7183240 None:intergenic 55.0%
TCTGGTTGGGGGACTCTACC+TGG + chr3_2:7183422-7183441 None:intergenic 60.0%
TCTGGTTGGGGGACTCTACC+TGG + chr3_2:7183422-7183441 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 7182439 7184387 7182439 ID=Msa0393150;Name=Msa0393150
chr3_2 mRNA 7182439 7184387 7182439 ID=Msa0393150-mRNA-1;Parent=Msa0393150;Name=Msa0393150-mRNA-1;_AED=0.01;_eAED=0.01;_QI=35|1|0.5|1|1|1|2|0|420
chr3_2 exon 7182439 7183601 7182439 ID=Msa0393150-mRNA-1:exon:1758;Parent=Msa0393150-mRNA-1
chr3_2 exon 7184253 7184387 7184253 ID=Msa0393150-mRNA-1:exon:1757;Parent=Msa0393150-mRNA-1
chr3_2 five_prime_UTR 7184353 7184387 7184353 ID=Msa0393150-mRNA-1:five_prime_utr;Parent=Msa0393150-mRNA-1
chr3_2 CDS 7184253 7184352 7184253 ID=Msa0393150-mRNA-1:cds;Parent=Msa0393150-mRNA-1
chr3_2 CDS 7182439 7183601 7182439 ID=Msa0393150-mRNA-1:cds;Parent=Msa0393150-mRNA-1
Gene Sequence

>Msa0393150

ATGGCTACCTTGCAATCATATGACTACGAAGATGTGCATCCAGTAATTGAAAAAAAGAATACTCCAGACTCACACCTTCTCATTGTTCAAATTCCTGATGGTTTTGCACGAGGGGATATTGGTGCTAAAGTTGAGTATGATTTTGGAAGGGTGAGAGTTTTTGGTGAAAGATCAGCTGGATCAAATAAAAGGATCCGTTTCAATGTAAAGTATCAAGTTCCATCACATTGTGATATTGGCAATATTAAAGGTAAGATTGATGGAAAAATTGTCACAATCACAATGCCAAATATTCCAGGTAGAGTCCCCCAACCAGAAGAAGAACCAGTTGAAGAAAATAATAATAAAGCTGAGGAGGTAAATGATCAAAAGGATCAACAAAACACTTCTGTTCAAGATCCTAAATCAAATGTTGAAAGTAAAGAAGATGCTACCCCACAAGATGCTCAAAAAGTTCAAGAAGAAAATTCTCAAAAAGATCAAGTTGCAAAAGTTGATAGCAAAGGAGAGACTTATCATGAGACTTCAACTTCACAAGAAGCCACACAAGAGTCTTTACCTCAAAAGGATCAAGAAGAAATTTCACAAAAAGAGTCTTTACCTCAAAAGGGCCAAGAAGAAATTTCTCAAAAAGAGTCTTTACCTCAAAAGGGTCAAGAAGAAATTTCTCAAAAATCTCAAGTTGCAAAAGTTGAAAGTAAGGAAAATGCTAATCAAGAGACTTCAACTCAATCAGAAGGCACACATGAGTCTAAACCTCAAAAGGGTCAAGATCAAGGAATTCAAAATAAACCTACAGATACAAAAGATGCAAAACTTCAAACAGAAGAAAGTGTAAAAGATGAGAATAAGGAAAAGCAAATGGTTGTAAAAGAAGAAACTAAGGATCATCTTAAGAAAGCTATAGAAACAGTAAAGTCACATGTGGCGGATGATTCTTCCCCTACACTTGAAAGGAAAACCAAGGACGAAAGCAAAGGATCTGCCACAGTTGAAACTTTTCCTCCAATGAAAACATACAAAGAGAAGGGAAAGGAAATGATCAATGATAAATTTGGTGATCATGATGAGAAAAAGATTCTTGATTCAACAAGGACAAGAATCAAAGACATGGCTTTATCCACTACTCAAGCTGTAACCAGTTATGCAAAGAGGTTCAGTGAAGAAGATAAACAAAAGCTAATATACACTGGTGCAACAATTCTTGTGGTTGCACTTGGTGTTTATGCTTCCTACAAGTATCGTTCTTCGCGTAGAGCATAG

Protein sequence

>Msa0393150

MATLQSYDYEDVHPVIEKKNTPDSHLLIVQIPDGFARGDIGAKVEYDFGRVRVFGERSAGSNKRIRFNVKYQVPSHCDIGNIKGKIDGKIVTITMPNIPGRVPQPEEEPVEENNNKAEEVNDQKDQQNTSVQDPKSNVESKEDATPQDAQKVQEENSQKDQVAKVDSKGETYHETSTSQEATQESLPQKDQEEISQKESLPQKGQEEISQKESLPQKGQEEISQKSQVAKVESKENANQETSTQSEGTHESKPQKGQDQGIQNKPTDTKDAKLQTEESVKDENKEKQMVVKEETKDHLKKAIETVKSHVADDSSPTLERKTKDESKGSATVETFPPMKTYKEKGKEMINDKFGDHDEKKILDSTRTRIKDMALSTTQAVTSYAKRFSEEDKQKLIYTGATILVVALGVYASYKYRSSRRA*