AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0441440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0441440 MtrunA17_Chr3g0078661 95.392 217 5 1 1 212 373 589 1.24e-148 426
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0441440 AT4G25230.3 64.789 213 68 3 1 212 372 578 4.55e-90 276
Msa0441440 AT4G25230.2 64.789 213 68 3 1 212 372 578 4.55e-90 276
Msa0441440 AT4G25230.1 64.789 213 68 3 1 212 372 578 4.55e-90 276
Msa0441440 AT5G51450.1 64.789 213 67 4 1 212 372 577 1.42e-89 274
Msa0441440 AT5G51450.2 60.606 231 65 5 1 212 372 595 6.56e-86 265

Find 190 sgRNAs with CRISPR-Local

Find 466 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGGTATCTTATTTCTTT+TGG 0.143623 3_3:+9828857 Msa0441440:intron
GAGAAAATTGCCAACATATT+TGG 0.156872 3_3:-9834546 None:intergenic
ACTCAGGTTGGTTGCATTCT+TGG 0.164820 3_3:+9832987 Msa0441440:CDS
TATAACTGTAGGTTCTTTAT+TGG 0.205185 3_3:+9831730 Msa0441440:intron
CAACCTTTGATGATGCTTCT+TGG 0.213908 3_3:+9833125 Msa0441440:CDS
TATAGTTGTGTATATAGTTT+AGG 0.222930 3_3:-9834667 None:intergenic
AAAGAAAGACTATTTATATC+TGG 0.242098 3_3:-9827776 None:intergenic
CTTAAATCAGATGGACTAAT+TGG 0.259879 3_3:+9829149 Msa0441440:five_prime_UTR
CCCTTTGTCCATCATTAATA+TGG 0.260037 3_3:-9828962 None:intergenic
GGCCGTACTTTGTTCTTTAA+AGG 0.264896 3_3:+9830669 Msa0441440:five_prime_UTR
CACTTTATCAAGCAGGTCTT+TGG 0.274479 3_3:+9830635 Msa0441440:five_prime_UTR
GTTGCATTCTTGGCCAAATC+AGG 0.276468 3_3:+9832997 Msa0441440:CDS
TGTGAAGTTTATAGCAATTT+CGG 0.299921 3_3:+9829064 Msa0441440:five_prime_UTR
ATGATGCTTCTTGGAACCTT+TGG 0.301147 3_3:+9833134 Msa0441440:CDS
ATATGAATTGCAGGCCATTT+TGG 0.312923 3_3:+9831292 Msa0441440:intron
GCAATGATAAACCGCATAAA+AGG 0.319003 3_3:+9832015 Msa0441440:five_prime_UTR
ATAGTTGTGTATATAGTTTA+GGG 0.325569 3_3:-9834666 None:intergenic
TTTGCTAAATTATCATTTGC+AGG 0.328363 3_3:-9833271 None:intergenic
AACCTTAATAAAATCACATT+TGG 0.335502 3_3:-9834215 None:intergenic
TGCATAGATGTTTCAAGCTC+TGG 0.346925 3_3:+9830791 Msa0441440:intron
TCTTTCTCTCTCTGTTGATT+CGG 0.351492 3_3:+9827826 Msa0441440:five_prime_UTR
GATTTCAGTTACTTGACATA+TGG 0.351948 3_3:+9831321 Msa0441440:five_prime_UTR
TTGGTCATTACTTGTATATA+TGG 0.354551 3_3:+9831819 Msa0441440:five_prime_UTR
AGCAATTTCGGCGGTTTCTA+CGG 0.359887 3_3:+9829076 Msa0441440:five_prime_UTR
TTCTCTCCCTTTGTCACAGT+TGG 0.362025 3_3:+9834564 Msa0441440:three_prime_UTR
TGGCCAAATCAGGGTGTTGA+TGG 0.364216 3_3:+9833007 Msa0441440:CDS
GCATTGTTGAGTGTCGGATT+TGG 0.365198 3_3:-9832577 None:intergenic
CCATGACATTGAGTTACCTT+TGG 0.374744 3_3:+9829202 Msa0441440:five_prime_UTR
GAAGCCTGAGAAGGATTAAT+AGG 0.380233 3_3:-9833157 None:intergenic
AAGAGAAAGAGAGAGAATTT+AGG 0.382097 3_3:-9827807 None:intergenic
GAAATGGTGGTTTACATATA+AGG 0.383514 3_3:+9833236 Msa0441440:CDS
GCTCCATCAACACCCTGATT+TGG 0.384253 3_3:-9833010 None:intergenic
TTGCTATGGCTGAGACTGTT+CGG 0.384425 3_3:+9833299 Msa0441440:CDS
TATCAAGCAGTTTAGTTGTT+CGG 0.384919 3_3:-9831376 None:intergenic
TTGTATATATGGCGGCTTCA+TGG 0.385653 3_3:+9831830 Msa0441440:five_prime_UTR
CTGAAATCCATGCACCAAAA+TGG 0.388541 3_3:-9831306 None:intergenic
GAGGGTGAGGTAAGGAGCGT+TGG 0.393013 3_3:-9827875 None:intergenic
TTGGCCTATTAATCCTTCTC+AGG 0.395938 3_3:+9833153 Msa0441440:CDS
TGACATATGGATTCATCATT+CGG 0.402304 3_3:+9831334 Msa0441440:five_prime_UTR
GATCGAATCCGGCACTCATT+TGG 0.409102 3_3:-9832513 None:intergenic
AGCTCTTCAGTGGTTGCATC+AGG 0.411339 3_3:-9832084 None:intergenic
AGATAGCAGAAAATATATAT+AGG 0.414981 3_3:+9834358 Msa0441440:three_prime_UTR
AGGGTGAGGTAAGGAGCGTT+GGG 0.418128 3_3:-9827874 None:intergenic
CTATAAGAAAGTTCTCTATC+TGG 0.419162 3_3:+9834685 Msa0441440:three_prime_UTR
TAAAAGGCTTTATTAGACTA+AGG 0.420440 3_3:+9832031 Msa0441440:five_prime_UTR
TGCTATGGCTGAGACTGTTC+GGG 0.421473 3_3:+9833300 Msa0441440:CDS
CATGACATTGAGTTACCTTT+GGG 0.425509 3_3:+9829203 Msa0441440:five_prime_UTR
CGTTAATTATGTCATTTACA+AGG 0.430759 3_3:+9830110 Msa0441440:five_prime_UTR
GGAGGTTCTACCTCATATTC+CGG 0.432309 3_3:+9833321 Msa0441440:CDS
TCCGGACGACATAATATTCC+AGG 0.436173 3_3:+9833339 Msa0441440:CDS
CTTATCTAGGAGCGCAGGAC+TGG 0.436821 3_3:+9832964 Msa0441440:intron
AAGGCTCAAAGAAAAGTAAC+AGG 0.437902 3_3:-9831165 None:intergenic
GAAGGAGCGGTCGCCTGACT+TGG 0.439287 3_3:-9833190 None:intergenic
GGGAATACTTATCCGGAACT+TGG 0.439914 3_3:+9831760 Msa0441440:five_prime_UTR
CTTTGTCACAGTTGGTGTGA+GGG 0.441821 3_3:+9834572 Msa0441440:three_prime_UTR
GAAAATTTATTGAAGAATCA+AGG 0.446871 3_3:+9834248 Msa0441440:three_prime_UTR
ATTTCATAAACTCTGCCCTC+TGG 0.457661 3_3:+9828922 Msa0441440:five_prime_UTR
TTGGGTTTGTATACCACCAT+AGG 0.461103 3_3:+9829221 Msa0441440:five_prime_UTR
ACCTGGAATATTATGTCGTC+CGG 0.467248 3_3:-9833340 None:intergenic
GGGTTTCTGCAATTATCAAT+CGG 0.468555 3_3:-9827853 None:intergenic
AATCAGATGGACTAATTGGC+TGG 0.468773 3_3:+9829153 Msa0441440:five_prime_UTR
AAGAAAGACTATTTATATCT+GGG 0.476596 3_3:-9827775 None:intergenic
AAGCAGGTCTTTGGTCAACT+TGG 0.476603 3_3:+9830644 Msa0441440:five_prime_UTR
CTGTAGGTTCTTTATTGGAA+TGG 0.478929 3_3:+9831735 Msa0441440:intron
CCTCACACCAACTGTGACAA+AGG 0.479346 3_3:-9834571 None:intergenic
CTTAGAGCTACAATTGTCCT+TGG 0.480097 3_3:+9834272 Msa0441440:three_prime_UTR
TGGCTGGAATTCAATTCACT+TGG 0.487314 3_3:+9829169 Msa0441440:five_prime_UTR
AATGAAACAAACTCTAGTAC+AGG 0.490198 3_3:+9832460 Msa0441440:CDS
TTCCGCGAGTGGTCCAAGTC+AGG 0.491088 3_3:+9833177 Msa0441440:CDS
GTAAGACTGCCAGGAGGAAA+TGG 0.491286 3_3:+9833220 Msa0441440:intron
AATGGAAGGGAATACTTATC+CGG 0.492575 3_3:+9831753 Msa0441440:five_prime_UTR
TACATATAAGGACCGCTTCA+CGG 0.492827 3_3:+9833248 Msa0441440:CDS
CATCACTCAGCTACCCTCTC+AGG 0.493368 3_3:-9828883 None:intergenic
GCTGAAGTTATTATTAGTAA+TGG 0.494317 3_3:+9829040 Msa0441440:five_prime_UTR
ACAATGCCGAAGGTGTTCCT+TGG 0.494423 3_3:+9832593 Msa0441440:CDS
CAGGCGACCGCTCCTTCCAC+TGG 0.494953 3_3:+9833196 Msa0441440:CDS
TTGCTTATGACAGGAACCTA+TGG 0.496458 3_3:+9832218 Msa0441440:intron
AGCTCTGGCTAGAGATCGAT+TGG 0.496608 3_3:+9830806 Msa0441440:five_prime_UTR
GCTATCAGAACAGTAGGTCT+CGG 0.496877 3_3:+9833046 Msa0441440:CDS
TTACCTCCAAGGAACACCTT+CGG 0.500316 3_3:-9832599 None:intergenic
TAGTGCTAACACCAATCTCC+TGG 0.500933 3_3:-9829012 None:intergenic
ACTCTGCCCTCTGGTTCCAT+TGG 0.501081 3_3:+9828931 Msa0441440:five_prime_UTR
ATCTTGCGTGTTTGAGATCG+TGG 0.507271 3_3:+9832278 Msa0441440:five_prime_UTR
CCTTTGTCACAGTTGGTGTG+AGG 0.508600 3_3:+9834571 Msa0441440:three_prime_UTR
ATGTTGAACCATATTAATGA+TGG 0.509494 3_3:+9828954 Msa0441440:five_prime_UTR
TTGAAGTCAGATGAAAATCC+AGG 0.510577 3_3:+9828994 Msa0441440:five_prime_UTR
TATGTCCAGGGTGTGGCAGA+TGG 0.511444 3_3:-9830846 None:intergenic
ATTATGTCGTCCGGAATATG+AGG 0.511917 3_3:-9833331 None:intergenic
CCATATTAATGATGGACAAA+GGG 0.512209 3_3:+9828962 Msa0441440:five_prime_UTR
CAGATGAAAATCCAGGAGAT+TGG 0.514081 3_3:+9829001 Msa0441440:five_prime_UTR
TTAGAGAAGCTTAAATCAGA+TGG 0.514153 3_3:+9829140 Msa0441440:five_prime_UTR
ATCAGTTTACGAGTTTCAGA+AGG 0.516795 3_3:-9830078 None:intergenic
AGGTTCTTTATTGGAATGGA+AGG 0.516889 3_3:+9831739 Msa0441440:intron
GTCATTACTTGTATATATGG+CGG 0.518434 3_3:+9831822 Msa0441440:five_prime_UTR
AGAAAGGAACGTGCCCAACT+TGG 0.518510 3_3:-9834444 None:intergenic
ACTGTTCTGATAGCAGTAGA+TGG 0.518649 3_3:-9833037 None:intergenic
AAAAGTGGCTTTCGGCATGT+TGG 0.520638 3_3:-9832421 None:intergenic
TTGCATTCTTGGCCAAATCA+GGG 0.524173 3_3:+9832998 Msa0441440:CDS
GACAAGTATACATCTCAGTC+AGG 0.526090 3_3:-9832399 None:intergenic
TATTGCTTTCGAGACACTGC+AGG 0.527283 3_3:+9831192 Msa0441440:five_prime_UTR
TACCTTTAAAGAACAAAGTA+CGG 0.531458 3_3:-9830671 None:intergenic
ATGCCGAAGGTGTTCCTTGG+AGG 0.534288 3_3:+9832596 Msa0441440:CDS
AAAATTGCCAACATATTTGG+AGG 0.534450 3_3:-9834543 None:intergenic
GGAATACTTATCCGGAACTT+GGG 0.534492 3_3:+9831761 Msa0441440:five_prime_UTR
CTATCAGAACAGTAGGTCTC+GGG 0.534822 3_3:+9833047 Msa0441440:CDS
CCTTCGGCATTGTTGAGTGT+CGG 0.535969 3_3:-9832583 None:intergenic
CCCTCTTTCTAGATCGACTC+AGG 0.536632 3_3:+9827893 Msa0441440:five_prime_UTR
ATATCCTCTTAGCTCTTCAG+TGG 0.537382 3_3:-9832094 None:intergenic
ACGATCTCAAACACGCAAGA+TGG 0.539779 3_3:-9832276 None:intergenic
CCTTCTCAGGCTTCCGCGAG+TGG 0.540130 3_3:+9833166 Msa0441440:CDS
AGGTCTTTGGTCAACTTGGT+TGG 0.540663 3_3:+9830648 Msa0441440:five_prime_UTR
TAATATGGTTCAACATCCAA+TGG 0.545197 3_3:-9828947 None:intergenic
TGGGTTTGTATACCACCATA+GGG 0.545778 3_3:+9829222 Msa0441440:five_prime_UTR
TTTAGCAAATGTGCTTGCTA+TGG 0.545866 3_3:+9833285 Msa0441440:CDS
CTCACACCAACTGTGACAAA+GGG 0.547780 3_3:-9834570 None:intergenic
CCTTCTTAATCTTAGTCTCA+AGG 0.549610 3_3:+9829277 Msa0441440:five_prime_UTR
TATATGGCGGCTTCATGGCA+TGG 0.551008 3_3:+9831835 Msa0441440:five_prime_UTR
ATATACACGAAGATATGTCC+AGG 0.553719 3_3:-9830859 None:intergenic
TTGTCACAGTTGGTGTGAGG+GGG 0.555293 3_3:+9834574 Msa0441440:three_prime_UTR
TTTACTACATTCAGGACTCA+GGG 0.556786 3_3:-9834402 None:intergenic
ATTAGACTAAGGATAGCTCT+AGG 0.556983 3_3:+9832042 Msa0441440:five_prime_UTR
ACAATTCGTCAATAACCCTA+TGG 0.557624 3_3:-9829237 None:intergenic
AGTGTTGGTGGCACAATCAG+TGG 0.557838 3_3:-9830616 None:intergenic
AATTGTCCTTGGAGAGGCAT+AGG 0.558188 3_3:+9834283 Msa0441440:three_prime_UTR
TCTAGAAAGAGGGTGAGGTA+AGG 0.558730 3_3:-9827883 None:intergenic
AAAGACAAACAATGACAGAA+AGG 0.560315 3_3:-9834460 None:intergenic
CCTTGAGACTAAGATTAAGA+AGG 0.563725 3_3:-9829277 None:intergenic
ATGAGACATCTTGCATCTGT+CGG 0.563921 3_3:+9833085 Msa0441440:CDS
CTTGAATATATAGCACAACA+TGG 0.565578 3_3:+9831130 Msa0441440:five_prime_UTR
ACCATATTAATGATGGACAA+AGG 0.565998 3_3:+9828961 Msa0441440:five_prime_UTR
ACCTGAGTCGATCTAGAAAG+AGG 0.566331 3_3:-9827894 None:intergenic
GGTTCTTTATTGGAATGGAA+GGG 0.567480 3_3:+9831740 Msa0441440:intron
TCTGCTACCTCCAAATATGT+TGG 0.570970 3_3:+9834536 Msa0441440:three_prime_UTR
AATCAGGGTGTTGATGGAGC+TGG 0.572135 3_3:+9833013 Msa0441440:CDS
ATAGCACTGCATCTACAAGA+TGG 0.573918 3_3:-9831862 None:intergenic
TCAAACACGCAAGATGGAAG+AGG 0.575860 3_3:-9832270 None:intergenic
CTTGCACGCCAAATGAGTGC+CGG 0.580024 3_3:+9832505 Msa0441440:CDS
GAAAAGTAACAGGAACATAG+AGG 0.580540 3_3:-9831155 None:intergenic
CCACCAACACTTTATCAAGC+AGG 0.580628 3_3:+9830628 Msa0441440:five_prime_UTR
AGGAGCGCAGGACTGGACTC+AGG 0.581791 3_3:+9832971 Msa0441440:intron
TTTGTCACAGTTGGTGTGAG+GGG 0.582248 3_3:+9834573 Msa0441440:three_prime_UTR
CATCTCCATCTGCCACACCC+TGG 0.582406 3_3:+9830841 Msa0441440:five_prime_UTR
ATCATTTGCAGGCCGTGAAG+CGG 0.586729 3_3:-9833260 None:intergenic
ATCAAAGGTTGTCTGAGCAT+AGG 0.588207 3_3:-9833113 None:intergenic
CGCCTGACTTGGACCACTCG+CGG 0.588328 3_3:-9833179 None:intergenic
GGGTGAGGTAAGGAGCGTTG+GGG 0.590545 3_3:-9827873 None:intergenic
CGGATTCGATCGTCAAAACT+CGG 0.591793 3_3:+9832525 Msa0441440:CDS
GCTAGACATAACATGCCTAC+AGG 0.591975 3_3:+9832547 Msa0441440:CDS
GTCTCGAAAGCAATACTCAA+AGG 0.593508 3_3:-9831184 None:intergenic
CCTGCTTGATAAAGTGTTGG+TGG 0.595637 3_3:-9830628 None:intergenic
AGCTACAATTGTCCTTGGAG+AGG 0.597540 3_3:+9834277 Msa0441440:three_prime_UTR
GTCGATCTAGAAAGAGGGTG+AGG 0.599358 3_3:-9827888 None:intergenic
CCACTCGCGGAAGCCTGAGA+AGG 0.601749 3_3:-9833166 None:intergenic
GCAACCACTGAAGAGCTAAG+AGG 0.609666 3_3:+9832090 Msa0441440:five_prime_UTR
ATGAAACAAACTCTAGTACA+GGG 0.610423 3_3:+9832461 Msa0441440:CDS
GCGCAGGACTGGACTCAGGT+TGG 0.610826 3_3:+9832975 Msa0441440:CDS
TCTACTGCTATCAGAACAGT+AGG 0.612039 3_3:+9833040 Msa0441440:CDS
GGCAGTCTTACACCAGTGGA+AGG 0.612218 3_3:-9833208 None:intergenic
GTTCCAAGAAGCATCATCAA+AGG 0.612545 3_3:-9833128 None:intergenic
ACGAAGATATGTCCAGGGTG+TGG 0.615696 3_3:-9830853 None:intergenic
CCTGAGTCGATCTAGAAAGA+GGG 0.617855 3_3:-9827893 None:intergenic
ATTCATCATTCGGCTTGCAG+TGG 0.618403 3_3:+9831344 Msa0441440:five_prime_UTR
CTGCTTGATACATTAACCGC+AGG 0.618547 3_3:+9831389 Msa0441440:five_prime_UTR
TCAGTTTACGAGTTTCAGAA+GGG 0.618605 3_3:-9830077 None:intergenic
ATGATGCCTATGCCTCTCCA+AGG 0.630735 3_3:-9834289 None:intergenic
GGATTTGGAAACAATCCTGT+AGG 0.631882 3_3:-9832562 None:intergenic
CCAAAGGTAACTCAATGTCA+TGG 0.635359 3_3:-9829202 None:intergenic
GATTGGTGTTAGCACTAGAG+AGG 0.640269 3_3:+9829018 Msa0441440:five_prime_UTR
TCTTACACCAGTGGAAGGAG+CGG 0.646620 3_3:-9833203 None:intergenic
AGAGGGTAGCTGAGTGATGG+TGG 0.647475 3_3:+9828887 Msa0441440:five_prime_UTR
GAGAAGGATTAATAGGCCAA+AGG 0.655734 3_3:-9833150 None:intergenic
ACTCAGGGTGAACAAAGAGA+AGG 0.657516 3_3:-9834387 None:intergenic
AGACTGCCAGGAGGAAATGG+TGG 0.661112 3_3:+9833223 Msa0441440:intron
TATTAATGATGGACAAAGGG+CGG 0.662357 3_3:+9828965 Msa0441440:five_prime_UTR
TGAAACAAACTCTAGTACAG+GGG 0.662791 3_3:+9832462 Msa0441440:CDS
CCGACACTCAACAATGCCGA+AGG 0.664560 3_3:+9832583 Msa0441440:CDS
TATGGCTGAGACTGTTCGGG+AGG 0.665136 3_3:+9833303 Msa0441440:CDS
TCAACATCCAATGGAACCAG+AGG 0.665506 3_3:-9828938 None:intergenic
TTGAATATATAGCACAACAT+GGG 0.666838 3_3:+9831131 Msa0441440:five_prime_UTR
CTGAGAGGGTAGCTGAGTGA+TGG 0.668106 3_3:+9828884 Msa0441440:five_prime_UTR
AGACCTGCTTGATAAAGTGT+TGG 0.670804 3_3:-9830631 None:intergenic
TGAATGTAGTAAAATAAATG+TGG 0.674476 3_3:+9834412 Msa0441440:three_prime_UTR
ATGGTGGTATACAAACCCAA+AGG 0.677582 3_3:-9829218 None:intergenic
ATGCTGTACAGGACTTGCAG+CGG 0.680004 3_3:+9834157 Msa0441440:intron
ATTCGTCAATAACCCTATGG+TGG 0.680473 3_3:-9829234 None:intergenic
CAACATCCAATGGAACCAGA+GGG 0.682440 3_3:-9828937 None:intergenic
TATACACGAAGATATGTCCA+GGG 0.692791 3_3:-9830858 None:intergenic
GAAGTTTATAGCAATTTCGG+CGG 0.708760 3_3:+9829067 Msa0441440:five_prime_UTR
TGGCTAGAGATCGATTGGAG+CGG 0.719750 3_3:+9830811 Msa0441440:five_prime_UTR
ATTCAAGTTAGATAATGACA+TGG 0.722339 3_3:-9834642 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATAAAAATCATTTTTTT+AGG - chr3_3:9827992-9828011 None:intergenic 10.0%
!! TATAAAGTATAAATAGATTA+TGG + chr3_3:9829329-9829348 Msa0441440:intron 10.0%
!!! ATTTTTATTATTTTGTTGAA+AGG - chr3_3:9833787-9833806 None:intergenic 10.0%
!! TTATTAAGTATTATATTTGA+TGG + chr3_3:9834018-9834037 Msa0441440:intron 10.0%
!!! AAAATCATTTTTTTAGGAAA+TGG - chr3_3:9827986-9828005 None:intergenic 15.0%
!! AATGAATCAAAAAATTCAAA+GGG - chr3_3:9828026-9828045 None:intergenic 15.0%
!! AAATGAATCAAAAAATTCAA+AGG - chr3_3:9828027-9828046 None:intergenic 15.0%
!!! TTGAATTTTTTGATTCATTT+TGG + chr3_3:9828027-9828046 Msa0441440:intron 15.0%
!!! TTTTTCTATTTGGATTTTTT+TGG + chr3_3:9828786-9828805 Msa0441440:intron 15.0%
!! TTTGAAAAGTTTAAATGTAA+TGG + chr3_3:9830510-9830529 Msa0441440:intron 15.0%
!!! AATTGTTATTTATTATGTCA+TGG + chr3_3:9830570-9830589 Msa0441440:intron 15.0%
!!! ATTATTGTAATTTTATAGCT+TGG + chr3_3:9831060-9831079 Msa0441440:intron 15.0%
!! AATAAAAATTGAAAGATTTC+AGG - chr3_3:9831579-9831598 None:intergenic 15.0%
!! CTACATATAAAAAACTAAAA+TGG - chr3_3:9832891-9832910 None:intergenic 15.0%
!! AACCATTATAGAAAAAAATT+GGG + chr3_3:9833583-9833602 Msa0441440:intron 15.0%
!!! TTTTCTGCATAATAAAATTA+AGG - chr3_3:9834101-9834120 None:intergenic 15.0%
!!! GATTTTATTAAGGTTTTATT+TGG + chr3_3:9834223-9834242 Msa0441440:exon 15.0%
!! AAGAAAGACTATTTATATCT+GGG - chr3_3:9827778-9827797 None:intergenic 20.0%
!! AAAGAAAGACTATTTATATC+TGG - chr3_3:9827779-9827798 None:intergenic 20.0%
!!! TGTTTTTGTTCTTTCAAAAT+TGG + chr3_3:9828277-9828296 Msa0441440:intron 20.0%
!!! CATTAAACTCTTTTTCTATT+TGG + chr3_3:9828776-9828795 Msa0441440:intron 20.0%
!!! AGTGTAATTTTCATTCTTTT+AGG + chr3_3:9829511-9829530 Msa0441440:intron 20.0%
!!! GTGTAATTTTCATTCTTTTA+GGG + chr3_3:9829512-9829531 Msa0441440:intron 20.0%
!!! TGTAATTTTCATTCTTTTAG+GGG + chr3_3:9829513-9829532 Msa0441440:intron 20.0%
!! ACATGATATGATAAGTAATA+AGG - chr3_3:9829782-9829801 None:intergenic 20.0%
!!! ACATGTATTTTTATGAGAAA+AGG + chr3_3:9829880-9829899 Msa0441440:intron 20.0%
!!! CATGTATTTTTATGAGAAAA+GGG + chr3_3:9829881-9829900 Msa0441440:intron 20.0%
!!! TACTTTTGAAGTAATTTAGT+AGG + chr3_3:9829936-9829955 Msa0441440:intron 20.0%
!! TATACCATGAAAAAAAATCA+TGG - chr3_3:9829974-9829993 None:intergenic 20.0%
!! CAACATATAAAAGGAAAATA+AGG - chr3_3:9830316-9830335 None:intergenic 20.0%
!!! CTTATTTTCCTTTTATATGT+TGG + chr3_3:9830314-9830333 Msa0441440:intron 20.0%
!! AATTTATAAGCTAGTTAACA+TGG + chr3_3:9830352-9830371 Msa0441440:intron 20.0%
!! TGATACAATGTATATTTACT+AGG - chr3_3:9830488-9830507 None:intergenic 20.0%
!!! CTTAGATTTAATTTTCGTAA+AGG + chr3_3:9831019-9831038 Msa0441440:intron 20.0%
!!! GGATTTAATTAGATTTTTCA+TGG + chr3_3:9831265-9831284 Msa0441440:intron 20.0%
!! TAATAACTAATCAACTCTAT+TGG + chr3_3:9831444-9831463 Msa0441440:intron 20.0%
!! AATAACTAATCAACTCTATT+GGG + chr3_3:9831445-9831464 Msa0441440:intron 20.0%
!! AAGAGAATCATATATAAAAC+AGG - chr3_3:9831491-9831510 None:intergenic 20.0%
!! AAGAAAGTTGAATGAAAAAA+TGG - chr3_3:9831546-9831565 None:intergenic 20.0%
!!! GTTCTTAATTTGCATAAATT+TGG + chr3_3:9831922-9831941 Msa0441440:intron 20.0%
!! AAAAGAAAATCAATAAACAC+AGG - chr3_3:9831977-9831996 None:intergenic 20.0%
!!! AAATTTAATTTGCTTATGAC+AGG + chr3_3:9832209-9832228 Msa0441440:intron 20.0%
!!! AAGTAATTTTTTCTGAACTT+TGG + chr3_3:9833418-9833437 Msa0441440:intron 20.0%
!!! AGTAATTTTTTCTGAACTTT+GGG + chr3_3:9833419-9833438 Msa0441440:intron 20.0%
!! CAACCATTATAGAAAAAAAT+TGG + chr3_3:9833582-9833601 Msa0441440:intron 20.0%
!! ACCATTATAGAAAAAAATTG+GGG + chr3_3:9833584-9833603 Msa0441440:intron 20.0%
!! CTTTAGATTCAATATATATC+AGG - chr3_3:9834131-9834150 None:intergenic 20.0%
!! AACCTTAATAAAATCACATT+TGG - chr3_3:9834218-9834237 None:intergenic 20.0%
!! GAAAATTTATTGAAGAATCA+AGG + chr3_3:9834248-9834267 Msa0441440:three_prime_UTR 20.0%
!! AGATAGCAGAAAATATATAT+AGG + chr3_3:9834358-9834377 Msa0441440:three_prime_UTR 20.0%
!!! ACATTTATTTTACTACATTC+AGG - chr3_3:9834413-9834432 None:intergenic 20.0%
!! TGAATGTAGTAAAATAAATG+TGG + chr3_3:9834412-9834431 Msa0441440:three_prime_UTR 20.0%
!! ATAGTTGTGTATATAGTTTA+GGG - chr3_3:9834669-9834688 None:intergenic 20.0%
!! TATAGTTGTGTATATAGTTT+AGG - chr3_3:9834670-9834689 None:intergenic 20.0%
!!! TTTTGATTCATTTTGGTTGT+TGG + chr3_3:9828034-9828053 Msa0441440:intron 25.0%
!!! TTTGATTCATTTTGGTTGTT+GGG + chr3_3:9828035-9828054 Msa0441440:intron 25.0%
!! TTCTCTAACTTGTATTGAAT+TGG + chr3_3:9828190-9828209 Msa0441440:intron 25.0%
!!! TTTAGTGCATATGTTTTGAT+TGG + chr3_3:9828361-9828380 Msa0441440:intron 25.0%
! AACCACTAATTACACATATT+GGG - chr3_3:9828491-9828510 None:intergenic 25.0%
!! TGATAGTTCTTTTCAAAAAG+CGG + chr3_3:9828661-9828680 Msa0441440:intron 25.0%
!!! TTAGGGTATCTTATTTCTTT+TGG + chr3_3:9828857-9828876 Msa0441440:intron 25.0%
! ATGTTGAACCATATTAATGA+TGG + chr3_3:9828954-9828973 Msa0441440:five_prime_UTR 25.0%
! GCTGAAGTTATTATTAGTAA+TGG + chr3_3:9829040-9829059 Msa0441440:five_prime_UTR 25.0%
! TGTGAAGTTTATAGCAATTT+CGG + chr3_3:9829064-9829083 Msa0441440:five_prime_UTR 25.0%
!! TGCTTCATTTTAAACTAAGA+GGG + chr3_3:9829449-9829468 Msa0441440:intron 25.0%
!! GTAATTTTCATTCTTTTAGG+GGG + chr3_3:9829514-9829533 Msa0441440:intron 25.0%
! TTTGGATCATTCAAAAGTAA+AGG - chr3_3:9829587-9829606 None:intergenic 25.0%
! AATGATCCAAACATAGATTA+TGG + chr3_3:9829596-9829615 Msa0441440:intron 25.0%
! AAGAATTTATAGTTCATCCT+AGG + chr3_3:9829743-9829762 Msa0441440:intron 25.0%
! TTCAAAAGTAAAGAAAGAGA+GGG - chr3_3:9829926-9829945 None:intergenic 25.0%
!! CGTTAATTATGTCATTTACA+AGG + chr3_3:9830110-9830129 Msa0441440:five_prime_UTR 25.0%
!!! TTAGTTCTTTTCTTTTTCTG+TGG + chr3_3:9830133-9830152 Msa0441440:intron 25.0%
!! TGTTATTTATTATGTCATGG+TGG + chr3_3:9830573-9830592 Msa0441440:intron 25.0%
!! TACCTTTAAAGAACAAAGTA+CGG - chr3_3:9830674-9830693 None:intergenic 25.0%
!!! AGCATTGTTATTCATTTTCT+TGG + chr3_3:9830884-9830903 Msa0441440:five_prime_UTR 25.0%
! TTTAACATAAATGACAGCTA+GGG + chr3_3:9830963-9830982 Msa0441440:intron 25.0%
! TTGAATATATAGCACAACAT+GGG + chr3_3:9831131-9831150 Msa0441440:five_prime_UTR 25.0%
!! GATTAGTTATTATAAGTTCC+AGG - chr3_3:9831436-9831455 None:intergenic 25.0%
! ATAACTAATCAACTCTATTG+GGG + chr3_3:9831446-9831465 Msa0441440:intron 25.0%
! TCACACTAATCAGATTATTT+CGG - chr3_3:9831634-9831653 None:intergenic 25.0%
! ATTTGAACTTCCTAATTATG+TGG + chr3_3:9831707-9831726 Msa0441440:intron 25.0%
! TACAGTTATACCACATAATT+AGG - chr3_3:9831720-9831739 None:intergenic 25.0%
! TAATTATGTGGTATAACTGT+AGG + chr3_3:9831719-9831738 Msa0441440:intron 25.0%
! TTGGTCATTACTTGTATATA+TGG + chr3_3:9831819-9831838 Msa0441440:five_prime_UTR 25.0%
!!! TTATTGATTTTCTTTTGAGC+AGG + chr3_3:9831981-9832000 Msa0441440:intron 25.0%
!!! TAAAAGGCTTTATTAGACTA+AGG + chr3_3:9832031-9832050 Msa0441440:five_prime_UTR 25.0%
! AAATCAGTTCAGAAACATAT+AGG - chr3_3:9832364-9832383 None:intergenic 25.0%
!!! TATGTTTCTGAACTGATTTT+AGG + chr3_3:9832365-9832384 Msa0441440:intron 25.0%
! CAAACACTATAGTAGTAAAA+AGG + chr3_3:9832751-9832770 Msa0441440:intron 25.0%
! GAGTTATATCCCATATATAT+GGG - chr3_3:9832789-9832808 None:intergenic 25.0%
! TGAGTTATATCCCATATATA+TGG - chr3_3:9832790-9832809 None:intergenic 25.0%
! CTAAATAAATGAAGACTTGT+AGG - chr3_3:9832822-9832841 None:intergenic 25.0%
! TTTGCTAAATTATCATTTGC+AGG - chr3_3:9833274-9833293 None:intergenic 25.0%
!! CAAAAAATCTAAAACATACC+TGG - chr3_3:9833360-9833379 None:intergenic 25.0%
! AAACATGAGAAAATTGCAAT+GGG + chr3_3:9833528-9833547 Msa0441440:intron 25.0%
!!! ACCCCAATTTTTTTCTATAA+TGG - chr3_3:9833588-9833607 None:intergenic 25.0%
! TGATGATATTCAAATTCTTG+AGG + chr3_3:9833748-9833767 Msa0441440:intron 25.0%
! GATGATATTCAAATTCTTGA+GGG + chr3_3:9833749-9833768 Msa0441440:intron 25.0%
! TATTTGACAACACAGTTTAA+GGG + chr3_3:9833990-9834009 Msa0441440:intron 25.0%
! AAAAATAAGTAACTCCTTCA+AGG - chr3_3:9834073-9834092 None:intergenic 25.0%
!!! GAAGGAGTTACTTATTTTTT+TGG + chr3_3:9834074-9834093 Msa0441440:intron 25.0%
!! CTCCAAATGTGATTTTATTA+AGG + chr3_3:9834213-9834232 Msa0441440:exon 25.0%
!! TATTTTCTGCTATCTTTCTT+GGG - chr3_3:9834353-9834372 None:intergenic 25.0%
!! ATATTTTCTGCTATCTTTCT+TGG - chr3_3:9834354-9834373 None:intergenic 25.0%
!! ATTCAAGTTAGATAATGACA+TGG - chr3_3:9834645-9834664 None:intergenic 25.0%
! TATCTGGGTCAATAATTTTG+CGG - chr3_3:9827763-9827782 None:intergenic 30.0%
AAGAGAAAGAGAGAGAATTT+AGG - chr3_3:9827810-9827829 None:intergenic 30.0%
TGCAAATTTCTAATCCTCTT+TGG + chr3_3:9828074-9828093 Msa0441440:intron 30.0%
GCAAATTTCTAATCCTCTTT+GGG + chr3_3:9828075-9828094 Msa0441440:intron 30.0%
CAAATTTCTAATCCTCTTTG+GGG + chr3_3:9828076-9828095 Msa0441440:intron 30.0%
!!! TTTTAGGGTTCTATACGATT+TGG + chr3_3:9828104-9828123 Msa0441440:intron 30.0%
GTTAAAATCTCATTGATCGT+AGG + chr3_3:9828137-9828156 Msa0441440:intron 30.0%
GTTCTTTCAAAATTGGTTGT+TGG + chr3_3:9828284-9828303 Msa0441440:intron 30.0%
CAAAGTTGCAAAAATCAGAT+TGG - chr3_3:9828414-9828433 None:intergenic 30.0%
! CAATCTGATTTTTGCAACTT+TGG + chr3_3:9828412-9828431 Msa0441440:intron 30.0%
! TGGAGTTTTACCAAAATCAA+AGG + chr3_3:9828432-9828451 Msa0441440:intron 30.0%
ATCCCAATATGTGTAATTAG+TGG + chr3_3:9828486-9828505 Msa0441440:intron 30.0%
CAACCACTAATTACACATAT+TGG - chr3_3:9828492-9828511 None:intergenic 30.0%
TTTAGTAGTTGAAAGTAGTG+AGG + chr3_3:9828535-9828554 Msa0441440:intron 30.0%
GTTTAATGAATGTGCATTGA+CGG - chr3_3:9828764-9828783 None:intergenic 30.0%
TTGTTCATTCTTTCTCTGTT+AGG + chr3_3:9828839-9828858 Msa0441440:intron 30.0%
TGTTCATTCTTTCTCTGTTA+GGG + chr3_3:9828840-9828859 Msa0441440:intron 30.0%
TAATATGGTTCAACATCCAA+TGG - chr3_3:9828950-9828969 None:intergenic 30.0%
!! ACCATATTAATGATGGACAA+AGG + chr3_3:9828961-9828980 Msa0441440:five_prime_UTR 30.0%
!! CCATATTAATGATGGACAAA+GGG + chr3_3:9828962-9828981 Msa0441440:five_prime_UTR 30.0%
TTAGAGAAGCTTAAATCAGA+TGG + chr3_3:9829140-9829159 Msa0441440:five_prime_UTR 30.0%
!! CTTAAATCAGATGGACTAAT+TGG + chr3_3:9829149-9829168 Msa0441440:five_prime_UTR 30.0%
! GTGCTTCATTTTAAACTAAG+AGG + chr3_3:9829448-9829467 Msa0441440:intron 30.0%
CAAGTAGTGTTAAAGTAGAA+TGG + chr3_3:9829477-9829496 Msa0441440:intron 30.0%
ACTCATCCATAATCTATGTT+TGG - chr3_3:9829605-9829624 None:intergenic 30.0%
TACTTATCATATCATGTTGC+TGG + chr3_3:9829785-9829804 Msa0441440:intron 30.0%
TAAGCTCACAAAAGTTGTTA+TGG + chr3_3:9829824-9829843 Msa0441440:intron 30.0%
TCATAAAAATACATGTCTGC+AGG - chr3_3:9829876-9829895 None:intergenic 30.0%
TCAAAAGTAAAGAAAGAGAG+GGG - chr3_3:9829925-9829944 None:intergenic 30.0%
CTTCAAAAGTAAAGAAAGAG+AGG - chr3_3:9829927-9829946 None:intergenic 30.0%
AGTAATTTAGTAGGCTACAA+TGG + chr3_3:9829945-9829964 Msa0441440:intron 30.0%
!!! GTGTCCATGATTTTTTTTCA+TGG + chr3_3:9829967-9829986 Msa0441440:intron 30.0%
GAAAGAACAATGTTGATGTA+GGG - chr3_3:9830006-9830025 None:intergenic 30.0%
AGAAAGAACAATGTTGATGT+AGG - chr3_3:9830007-9830026 None:intergenic 30.0%
AACATTGTTCTTTCTGTTCA+TGG + chr3_3:9830012-9830031 Msa0441440:intron 30.0%
TAAGGAACACGATGAAAAAA+GGG - chr3_3:9830298-9830317 None:intergenic 30.0%
ATAAGGAACACGATGAAAAA+AGG - chr3_3:9830299-9830318 None:intergenic 30.0%
ACACTAAGCCAACATATAAA+AGG - chr3_3:9830325-9830344 None:intergenic 30.0%
!! TTATATGTTGGCTTAGTGTT+TGG + chr3_3:9830326-9830345 Msa0441440:intron 30.0%
!! AGTTTGTTGACTTAGAGATA+TGG + chr3_3:9830446-9830465 Msa0441440:intron 30.0%
! ATTTATTATGTCATGGTGGA+TGG + chr3_3:9830577-9830596 Msa0441440:intron 30.0%
! GCTGTCATTTATGTTAAACA+AGG - chr3_3:9830961-9830980 None:intergenic 30.0%
GTTTAACATAAATGACAGCT+AGG + chr3_3:9830962-9830981 Msa0441440:intron 30.0%
TAAATCTAAGCATGCTCAAA+CGG - chr3_3:9831009-9831028 None:intergenic 30.0%
! ACTTCTCTTTTTATGCTTCT+AGG + chr3_3:9831095-9831114 Msa0441440:intron 30.0%
!!! CTTTTTATGCTTCTAGGATA+AGG + chr3_3:9831101-9831120 Msa0441440:intron 30.0%
CTTGAATATATAGCACAACA+TGG + chr3_3:9831130-9831149 Msa0441440:five_prime_UTR 30.0%
GATTTCAGTTACTTGACATA+TGG + chr3_3:9831321-9831340 Msa0441440:five_prime_UTR 30.0%
TGACATATGGATTCATCATT+CGG + chr3_3:9831334-9831353 Msa0441440:five_prime_UTR 30.0%
TATCAAGCAGTTTAGTTGTT+CGG - chr3_3:9831379-9831398 None:intergenic 30.0%
TAACTAATCAACTCTATTGG+GGG + chr3_3:9831447-9831466 Msa0441440:intron 30.0%
TAAAAAATGTGGCCATATCT+AGG - chr3_3:9831793-9831812 None:intergenic 30.0%
!!! AGATATGGCCACATTTTTTA+TGG + chr3_3:9831793-9831812 Msa0441440:five_prime_UTR 30.0%
GTCATTACTTGTATATATGG+CGG + chr3_3:9831822-9831841 Msa0441440:five_prime_UTR 30.0%
AGAAAATCAATAAACACAGG+TGG - chr3_3:9831974-9831993 None:intergenic 30.0%
! GTCTAATAAAGCCTTTTATG+CGG - chr3_3:9832029-9832048 None:intergenic 30.0%
!! TTTCTGAACTGATTTTAGGT+TGG + chr3_3:9832369-9832388 Msa0441440:intron 30.0%
!! CTAGAGTTTGTTTCATTTTC+AGG - chr3_3:9832457-9832476 None:intergenic 30.0%
AATGAAACAAACTCTAGTAC+AGG + chr3_3:9832460-9832479 Msa0441440:CDS 30.0%
ATGAAACAAACTCTAGTACA+GGG + chr3_3:9832461-9832480 Msa0441440:CDS 30.0%
TTGTGTGCAATATGTATAAG+AGG + chr3_3:9832689-9832708 Msa0441440:intron 30.0%
GAAATGTGTCCCATATATAT+GGG + chr3_3:9832777-9832796 Msa0441440:intron 30.0%
CAAGTCTTCATTTATTTAGC+TGG + chr3_3:9832823-9832842 Msa0441440:intron 30.0%
GATTTATTGCAAGATCAGAA+TGG + chr3_3:9832856-9832875 Msa0441440:intron 30.0%
!!! GCATATTTTTTTTGCCGATT+TGG + chr3_3:9832935-9832954 Msa0441440:intron 30.0%
TAGATAAGAAAAGGCCAAAT+CGG - chr3_3:9832952-9832971 None:intergenic 30.0%
GAAATGGTGGTTTACATATA+AGG + chr3_3:9833236-9833255 Msa0441440:CDS 30.0%
ATGAATGGTATGATAACTGA+TGG + chr3_3:9833447-9833466 Msa0441440:intron 30.0%
TGAATGGTATGATAACTGAT+GGG + chr3_3:9833448-9833467 Msa0441440:intron 30.0%
CAAACATGAGAAAATTGCAA+TGG + chr3_3:9833527-9833546 Msa0441440:intron 30.0%
ATAGATGATAGTCCAATTGT+TGG + chr3_3:9833689-9833708 Msa0441440:intron 30.0%
ATGCTATAACTTGAACAAGT+TGG + chr3_3:9833861-9833880 Msa0441440:intron 30.0%
TTGTCAAATAGTGACTATTG+AGG - chr3_3:9833980-9833999 None:intergenic 30.0%
CTATTTGACAACACAGTTTA+AGG + chr3_3:9833989-9834008 Msa0441440:intron 30.0%
! GGCATCATTTTCATGTATAT+AGG + chr3_3:9834304-9834323 Msa0441440:three_prime_UTR 30.0%
AAAGACAAACAATGACAGAA+AGG - chr3_3:9834463-9834482 None:intergenic 30.0%
AAAATTGCCAACATATTTGG+AGG - chr3_3:9834546-9834565 None:intergenic 30.0%
GAGAAAATTGCCAACATATT+TGG - chr3_3:9834549-9834568 None:intergenic 30.0%
CTATAAGAAAGTTCTCTATC+TGG + chr3_3:9834685-9834704 Msa0441440:three_prime_UTR 30.0%
! ATCTGGGTCAATAATTTTGC+GGG - chr3_3:9827762-9827781 None:intergenic 35.0%
! TCTTTCTCTCTCTGTTGATT+CGG + chr3_3:9827826-9827845 Msa0441440:five_prime_UTR 35.0%
GGGTTTCTGCAATTATCAAT+CGG - chr3_3:9827856-9827875 None:intergenic 35.0%
AAAAATTCAAAGGGTAAGCG+AGG - chr3_3:9828017-9828036 None:intergenic 35.0%
!!! TTGTTGGGTTTTTTCTCGTT+TGG + chr3_3:9828050-9828069 Msa0441440:intron 35.0%
!!! CTCTTTGGGGTATGATTTTA+GGG + chr3_3:9828089-9828108 Msa0441440:intron 35.0%
AAATCTCATTGATCGTAGGT+AGG + chr3_3:9828141-9828160 Msa0441440:intron 35.0%
!!! AGTGCATATGTTTTGATTGG+TGG + chr3_3:9828364-9828383 Msa0441440:intron 35.0%
ATTACACATATTGGGATTGC+CGG - chr3_3:9828483-9828502 None:intergenic 35.0%
AAAGTTTACACTGACATGCA+TGG + chr3_3:9828582-9828601 Msa0441440:intron 35.0%
ATCAAACGCTCCATTCTTAT+TGG - chr3_3:9828645-9828664 None:intergenic 35.0%
! TACATGACAAGTTGACAACA+TGG + chr3_3:9828701-9828720 Msa0441440:intron 35.0%
CCCTTTGTCCATCATTAATA+TGG - chr3_3:9828965-9828984 None:intergenic 35.0%
!! TATTAATGATGGACAAAGGG+CGG + chr3_3:9828965-9828984 Msa0441440:five_prime_UTR 35.0%
TTGAAGTCAGATGAAAATCC+AGG + chr3_3:9828994-9829013 Msa0441440:five_prime_UTR 35.0%
GAAGTTTATAGCAATTTCGG+CGG + chr3_3:9829067-9829086 Msa0441440:five_prime_UTR 35.0%
!! TCTACGGTGTTAAGTTTTGT+AGG + chr3_3:9829092-9829111 Msa0441440:five_prime_UTR 35.0%
CATGACATTGAGTTACCTTT+GGG + chr3_3:9829203-9829222 Msa0441440:five_prime_UTR 35.0%
ACAATTCGTCAATAACCCTA+TGG - chr3_3:9829240-9829259 None:intergenic 35.0%
CCTTGAGACTAAGATTAAGA+AGG - chr3_3:9829280-9829299 None:intergenic 35.0%
CCTTCTTAATCTTAGTCTCA+AGG + chr3_3:9829277-9829296 Msa0441440:five_prime_UTR 35.0%
ATTATGGCATTATGCCCAAT+GGG + chr3_3:9829345-9829364 Msa0441440:intron 35.0%
ACAAATCAACATGTCCCATT+GGG - chr3_3:9829362-9829381 None:intergenic 35.0%
GTTTGTATGTTCAGTACTTC+TGG + chr3_3:9829386-9829405 Msa0441440:intron 35.0%
AGTGTTAAAGTAGAATGGCT+AGG + chr3_3:9829482-9829501 Msa0441440:intron 35.0%
! TAAGTTGGAGTTGTATGTCA+TGG - chr3_3:9829682-9829701 None:intergenic 35.0%
TTATCATATCATGTTGCTGG+TGG + chr3_3:9829788-9829807 Msa0441440:intron 35.0%
TATCATATCATGTTGCTGGT+GGG + chr3_3:9829789-9829808 Msa0441440:intron 35.0%
TCAGTTTACGAGTTTCAGAA+GGG - chr3_3:9830080-9830099 None:intergenic 35.0%
ATCAGTTTACGAGTTTCAGA+AGG - chr3_3:9830081-9830100 None:intergenic 35.0%
ATAGTCTGAATCAGTTTGCA+GGG - chr3_3:9830175-9830194 None:intergenic 35.0%
AATAGTCTGAATCAGTTTGC+AGG - chr3_3:9830176-9830195 None:intergenic 35.0%
TATACACGAAGATATGTCCA+GGG - chr3_3:9830861-9830880 None:intergenic 35.0%
ATATACACGAAGATATGTCC+AGG - chr3_3:9830862-9830881 None:intergenic 35.0%
!!! ATTTTCTTGGTGATGTTCTC+TGG + chr3_3:9830897-9830916 Msa0441440:five_prime_UTR 35.0%
CAAGGATTGTATCGAAAAAG+AGG - chr3_3:9830943-9830962 None:intergenic 35.0%
AAATCTAAGCATGCTCAAAC+GGG - chr3_3:9831008-9831027 None:intergenic 35.0%
GAAAAGTAACAGGAACATAG+AGG - chr3_3:9831158-9831177 None:intergenic 35.0%
AAGGCTCAAAGAAAAGTAAC+AGG - chr3_3:9831168-9831187 None:intergenic 35.0%
ATCTACTCATATCATCATGC+TGG + chr3_3:9831244-9831263 Msa0441440:intron 35.0%
! ATATGAATTGCAGGCCATTT+TGG + chr3_3:9831292-9831311 Msa0441440:intron 35.0%
! ACTTTTATCCAAACTACCTG+CGG - chr3_3:9831408-9831427 None:intergenic 35.0%
TTTGGATAAAAGTCTGATCC+TGG + chr3_3:9831415-9831434 Msa0441440:intron 35.0%
TGATTCTCTTTGCATTACCT+AGG + chr3_3:9831501-9831520 Msa0441440:intron 35.0%
AGACATGCTATAACTTATCG+AGG - chr3_3:9831675-9831694 None:intergenic 35.0%
AATGGAAGGGAATACTTATC+CGG + chr3_3:9831753-9831772 Msa0441440:five_prime_UTR 35.0%
! CTTGGGATTTTTCCTAGATA+TGG + chr3_3:9831778-9831797 Msa0441440:five_prime_UTR 35.0%
ACCAAGTGCCATAAAAAATG+TGG - chr3_3:9831804-9831823 None:intergenic 35.0%
GCAATGATAAACCGCATAAA+AGG + chr3_3:9832015-9832034 Msa0441440:five_prime_UTR 35.0%
ATTAGACTAAGGATAGCTCT+AGG + chr3_3:9832042-9832061 Msa0441440:five_prime_UTR 35.0%
!!! TAGCTTTTTAGCTTAGCCAT+AGG - chr3_3:9832237-9832256 None:intergenic 35.0%
!!! ACTGATTTTAGGTTGGATCA+AGG + chr3_3:9832376-9832395 Msa0441440:intron 35.0%
!! AGTTTGTTTCATTTTCAGGC+CGG - chr3_3:9832453-9832472 None:intergenic 35.0%
TGAAACAAACTCTAGTACAG+GGG + chr3_3:9832462-9832481 Msa0441440:CDS 35.0%
!!! TCCTTCTGTCTCTTTTTTTG+TGG + chr3_3:9832648-9832667 Msa0441440:intron 35.0%
TCCACAAAAAAAGAGACAGA+AGG - chr3_3:9832652-9832671 None:intergenic 35.0%
CGAAATGTGTCCCATATATA+TGG + chr3_3:9832776-9832795 Msa0441440:intron 35.0%
!! GATTTGGCCTTTTCTTATCT+AGG + chr3_3:9832951-9832970 Msa0441440:intron 35.0%
! TTTAGCAAATGTGCTTGCTA+TGG + chr3_3:9833285-9833304 Msa0441440:CDS 35.0%
GAACTTTGGGTATGTATGAA+TGG + chr3_3:9833432-9833451 Msa0441440:intron 35.0%
TTTCTCATGTTTGCAACACT+AGG - chr3_3:9833520-9833539 None:intergenic 35.0%
AGAAAATTGCAATGGGTGAA+CGG + chr3_3:9833535-9833554 Msa0441440:intron 35.0%
TCTACCATCTTTCCTACTAT+GGG - chr3_3:9833614-9833633 None:intergenic 35.0%
TTCTACCATCTTTCCTACTA+TGG - chr3_3:9833615-9833634 None:intergenic 35.0%
! GAAATGATGGAAAACTAGGA+TGG - chr3_3:9833829-9833848 None:intergenic 35.0%
! GCTAGAAATGATGGAAAACT+AGG - chr3_3:9833833-9833852 None:intergenic 35.0%
ATTCCAAGATCCACAATGTT+TGG + chr3_3:9833897-9833916 Msa0441440:intron 35.0%
TTCCAAGATCCACAATGTTT+GGG + chr3_3:9833898-9833917 Msa0441440:intron 35.0%
TATAGTTGTTGAAGCCTTGA+AGG + chr3_3:9834056-9834075 Msa0441440:intron 35.0%
! TAAAGCTTTTGATGCTGTAC+AGG + chr3_3:9834146-9834165 Msa0441440:intron 35.0%
TTTACTACATTCAGGACTCA+GGG - chr3_3:9834405-9834424 None:intergenic 35.0%
! TTTTACTACATTCAGGACTC+AGG - chr3_3:9834406-9834425 None:intergenic 35.0%
CCTAAAATCATACCCCAAAG+AGG - chr3_3:9828091-9828110 None:intergenic 40.0%
!!! CCTCTTTGGGGTATGATTTT+AGG + chr3_3:9828088-9828107 Msa0441440:intron 40.0%
!!! GTTTTGATTGGTGGTGACTT+TGG + chr3_3:9828373-9828392 Msa0441440:intron 40.0%
TGGTGACTTTGGTAGAATCA+CGG + chr3_3:9828384-9828403 Msa0441440:intron 40.0%
!! CACAGTAGCACCTTTGATTT+TGG - chr3_3:9828445-9828464 None:intergenic 40.0%
TGTGATTTCGTCAAACTCAC+CGG + chr3_3:9828461-9828480 Msa0441440:intron 40.0%
ACACTGACGTCCAATAAGAA+TGG + chr3_3:9828632-9828651 Msa0441440:intron 40.0%
! ATGACAAGTTGACAACATGG+TGG + chr3_3:9828704-9828723 Msa0441440:intron 40.0%
GACAACATGGTGGTTCTTAT+TGG + chr3_3:9828714-9828733 Msa0441440:intron 40.0%
AACATGGTGGTTCTTATTGG+AGG + chr3_3:9828717-9828736 Msa0441440:intron 40.0%
!! ATTTCTTTTGGAGACCTGAG+AGG + chr3_3:9828869-9828888 Msa0441440:five_prime_UTR 40.0%
!! TTTCTTTTGGAGACCTGAGA+GGG + chr3_3:9828870-9828889 Msa0441440:five_prime_UTR 40.0%
ATTTCATAAACTCTGCCCTC+TGG + chr3_3:9828922-9828941 Msa0441440:five_prime_UTR 40.0%
CAGATGAAAATCCAGGAGAT+TGG + chr3_3:9829001-9829020 Msa0441440:five_prime_UTR 40.0%
!! AATCAGATGGACTAATTGGC+TGG + chr3_3:9829153-9829172 Msa0441440:five_prime_UTR 40.0%
TGGCTGGAATTCAATTCACT+TGG + chr3_3:9829169-9829188 Msa0441440:five_prime_UTR 40.0%
CCAAAGGTAACTCAATGTCA+TGG - chr3_3:9829205-9829224 None:intergenic 40.0%
CCATGACATTGAGTTACCTT+TGG + chr3_3:9829202-9829221 Msa0441440:five_prime_UTR 40.0%
ATGGTGGTATACAAACCCAA+AGG - chr3_3:9829221-9829240 None:intergenic 40.0%
TTGGGTTTGTATACCACCAT+AGG + chr3_3:9829221-9829240 Msa0441440:five_prime_UTR 40.0%
TGGGTTTGTATACCACCATA+GGG + chr3_3:9829222-9829241 Msa0441440:five_prime_UTR 40.0%
ATTCGTCAATAACCCTATGG+TGG - chr3_3:9829237-9829256 None:intergenic 40.0%
GTCTCAAGGTGAGTTTGTAA+TGG + chr3_3:9829291-9829310 Msa0441440:intron 40.0%
GATTATGGCATTATGCCCAA+TGG + chr3_3:9829344-9829363 Msa0441440:intron 40.0%
CACAAATCAACATGTCCCAT+TGG - chr3_3:9829363-9829382 None:intergenic 40.0%
!! CAATGGGACATGTTGATTTG+TGG + chr3_3:9829361-9829380 Msa0441440:intron 40.0%
! CTTTGTTTCGTCAAGCTTAC+CGG + chr3_3:9829651-9829670 Msa0441440:intron 40.0%
GTTGTATGTCATGGACAAAC+CGG - chr3_3:9829673-9829692 None:intergenic 40.0%
! GAGAGGGGTGTAAAGTATTA+TGG - chr3_3:9829910-9829929 None:intergenic 40.0%
ATAGTCTGCATGCGATAAGA+AGG - chr3_3:9830039-9830058 None:intergenic 40.0%
TTGATTGCAAGACACTCCAT+TGG + chr3_3:9830264-9830283 Msa0441440:intron 40.0%
AAGCTAGTTAACATGGTTGC+AGG + chr3_3:9830359-9830378 Msa0441440:intron 40.0%
AGACCTGCTTGATAAAGTGT+TGG - chr3_3:9830634-9830653 None:intergenic 40.0%
CACTTTATCAAGCAGGTCTT+TGG + chr3_3:9830635-9830654 Msa0441440:five_prime_UTR 40.0%
GGCCGTACTTTGTTCTTTAA+AGG + chr3_3:9830669-9830688 Msa0441440:five_prime_UTR 40.0%
TGCATAGATGTTTCAAGCTC+TGG + chr3_3:9830791-9830810 Msa0441440:intron 40.0%
GTCTCGAAAGCAATACTCAA+AGG - chr3_3:9831187-9831206 None:intergenic 40.0%
CATGGTGTGATATGAATTGC+AGG + chr3_3:9831283-9831302 Msa0441440:intron 40.0%
CTGAAATCCATGCACCAAAA+TGG - chr3_3:9831309-9831328 None:intergenic 40.0%
TACATTAACCGCAGGTAGTT+TGG + chr3_3:9831397-9831416 Msa0441440:intron 40.0%
GTTGCTGCAGACAACATATT+TGG + chr3_3:9831599-9831618 Msa0441440:intron 40.0%
GGAATACTTATCCGGAACTT+GGG + chr3_3:9831761-9831780 Msa0441440:five_prime_UTR 40.0%
CTAGGAAAAATCCCAAGTTC+CGG - chr3_3:9831775-9831794 None:intergenic 40.0%
!!! GCCACATTTTTTATGGCACT+TGG + chr3_3:9831800-9831819 Msa0441440:five_prime_UTR 40.0%
TTGTATATATGGCGGCTTCA+TGG + chr3_3:9831830-9831849 Msa0441440:five_prime_UTR 40.0%
ATAGCACTGCATCTACAAGA+TGG - chr3_3:9831865-9831884 None:intergenic 40.0%
! ATATCCTCTTAGCTCTTCAG+TGG - chr3_3:9832097-9832116 None:intergenic 40.0%
TTGCTTATGACAGGAACCTA+TGG + chr3_3:9832218-9832237 Msa0441440:intron 40.0%
GACAAGTATACATCTCAGTC+AGG - chr3_3:9832402-9832421 None:intergenic 40.0%
GGATTTGGAAACAATCCTGT+AGG - chr3_3:9832565-9832584 None:intergenic 40.0%
! GTGTGAAGATTTTACCTCCA+AGG - chr3_3:9832613-9832632 None:intergenic 40.0%
! CATTGATTGATTGCTGAGCT+AGG - chr3_3:9832727-9832746 None:intergenic 40.0%
CTAGCTCAGCAATCAATCAA+TGG + chr3_3:9832725-9832744 Msa0441440:intron 40.0%
TTGCATTCTTGGCCAAATCA+GGG + chr3_3:9832998-9833017 Msa0441440:CDS 40.0%
ACTGTTCTGATAGCAGTAGA+TGG - chr3_3:9833040-9833059 None:intergenic 40.0%
TCTACTGCTATCAGAACAGT+AGG + chr3_3:9833040-9833059 Msa0441440:CDS 40.0%
ATGAGACATCTTGCATCTGT+CGG + chr3_3:9833085-9833104 Msa0441440:CDS 40.0%
ATCAAAGGTTGTCTGAGCAT+AGG - chr3_3:9833116-9833135 None:intergenic 40.0%
!! CAACCTTTGATGATGCTTCT+TGG + chr3_3:9833125-9833144 Msa0441440:CDS 40.0%
!! GTTCCAAGAAGCATCATCAA+AGG - chr3_3:9833131-9833150 None:intergenic 40.0%
ATGATGCTTCTTGGAACCTT+TGG + chr3_3:9833134-9833153 Msa0441440:CDS 40.0%
GAGAAGGATTAATAGGCCAA+AGG - chr3_3:9833153-9833172 None:intergenic 40.0%
TTGGCCTATTAATCCTTCTC+AGG + chr3_3:9833153-9833172 Msa0441440:CDS 40.0%
GAAGCCTGAGAAGGATTAAT+AGG - chr3_3:9833160-9833179 None:intergenic 40.0%
TACATATAAGGACCGCTTCA+CGG + chr3_3:9833248-9833267 Msa0441440:CDS 40.0%
ATTATGTCGTCCGGAATATG+AGG - chr3_3:9833334-9833353 None:intergenic 40.0%
ACCTGGAATATTATGTCGTC+CGG - chr3_3:9833343-9833362 None:intergenic 40.0%
TAGTCCCATAGTAGGAAAGA+TGG + chr3_3:9833607-9833626 Msa0441440:intron 40.0%
AGATGGTAGAATCTCGTTTG+AGG + chr3_3:9833624-9833643 Msa0441440:intron 40.0%
GATGATAGTCCAATTGTTGG+AGG + chr3_3:9833692-9833711 Msa0441440:intron 40.0%
TGCTGAACAGCTAGAAATGA+TGG - chr3_3:9833842-9833861 None:intergenic 40.0%
! ACTTGAACAAGTTGGCACTT+AGG + chr3_3:9833869-9833888 Msa0441440:intron 40.0%
CATTGTGGATCTTGGAATCT+AGG - chr3_3:9833895-9833914 None:intergenic 40.0%
TACCCAAACATTGTGGATCT+TGG - chr3_3:9833903-9833922 None:intergenic 40.0%
TTTCTGCTACCCAAACATTG+TGG - chr3_3:9833910-9833929 None:intergenic 40.0%
CTTAGAGCTACAATTGTCCT+TGG + chr3_3:9834272-9834291 Msa0441440:three_prime_UTR 40.0%
! TGTGGTGTTTTTCTCCAAGT+TGG + chr3_3:9834430-9834449 Msa0441440:three_prime_UTR 40.0%
! GTGGTGTTTTTCTCCAAGTT+GGG + chr3_3:9834431-9834450 Msa0441440:three_prime_UTR 40.0%
TCTGCTACCTCCAAATATGT+TGG + chr3_3:9834536-9834555 Msa0441440:three_prime_UTR 40.0%
TCTAGAAAGAGGGTGAGGTA+AGG - chr3_3:9827886-9827905 None:intergenic 45.0%
CCTGAGTCGATCTAGAAAGA+GGG - chr3_3:9827896-9827915 None:intergenic 45.0%
ACCTGAGTCGATCTAGAAAG+AGG - chr3_3:9827897-9827916 None:intergenic 45.0%
GTAAACTTTGAGCCCAGAGA+AGG - chr3_3:9828571-9828590 None:intergenic 45.0%
CAACATCCAATGGAACCAGA+GGG - chr3_3:9828940-9828959 None:intergenic 45.0%
TCAACATCCAATGGAACCAG+AGG - chr3_3:9828941-9828960 None:intergenic 45.0%
TAGTGCTAACACCAATCTCC+TGG - chr3_3:9829015-9829034 None:intergenic 45.0%
!! GATTGGTGTTAGCACTAGAG+AGG + chr3_3:9829018-9829037 Msa0441440:five_prime_UTR 45.0%
AGCAATTTCGGCGGTTTCTA+CGG + chr3_3:9829076-9829095 Msa0441440:five_prime_UTR 45.0%
!! TGGGACATGTTGATTTGTGG+TGG + chr3_3:9829364-9829383 Msa0441440:intron 45.0%
AGTACTTCTGGTAGACTACG+TGG + chr3_3:9829398-9829417 Msa0441440:intron 45.0%
AGCACGAGAAACTCTGCAAA+TGG - chr3_3:9829433-9829452 None:intergenic 45.0%
!! GAGCGCTTTGGTTGATAAGT+TGG - chr3_3:9829697-9829716 None:intergenic 45.0%
TGTTGTGAAGACACCAGAAC+TGG - chr3_3:9829724-9829743 None:intergenic 45.0%
AAAAAGGGATGCCACACCAA+TGG - chr3_3:9830283-9830302 None:intergenic 45.0%
!! TTATGTCATGGTGGATGGAC+AGG + chr3_3:9830582-9830601 Msa0441440:intron 45.0%
!! TATGTCATGGTGGATGGACA+GGG + chr3_3:9830583-9830602 Msa0441440:intron 45.0%
!! CCTGCTTGATAAAGTGTTGG+TGG - chr3_3:9830631-9830650 None:intergenic 45.0%
CCACCAACACTTTATCAAGC+AGG + chr3_3:9830628-9830647 Msa0441440:five_prime_UTR 45.0%
AAGCAGGTCTTTGGTCAACT+TGG + chr3_3:9830644-9830663 Msa0441440:five_prime_UTR 45.0%
AGGTCTTTGGTCAACTTGGT+TGG + chr3_3:9830648-9830667 Msa0441440:five_prime_UTR 45.0%
ATAAATGACAGCTAGGGCTG+TGG + chr3_3:9830969-9830988 Msa0441440:intron 45.0%
TATTGCTTTCGAGACACTGC+AGG + chr3_3:9831192-9831211 Msa0441440:five_prime_UTR 45.0%
! ATTCATCATTCGGCTTGCAG+TGG + chr3_3:9831344-9831363 Msa0441440:five_prime_UTR 45.0%
CTGCTTGATACATTAACCGC+AGG + chr3_3:9831389-9831408 Msa0441440:five_prime_UTR 45.0%
ATACAACACATGCTCTGCCT+AGG - chr3_3:9831521-9831540 None:intergenic 45.0%
GGGAATACTTATCCGGAACT+TGG + chr3_3:9831760-9831779 Msa0441440:five_prime_UTR 45.0%
GTTTGCCAAACCTGTCTTTC+TGG + chr3_3:9832149-9832168 Msa0441440:intron 45.0%
ATCGACCAGAAAGACAGGTT+TGG - chr3_3:9832157-9832176 None:intergenic 45.0%
TCAAACACGCAAGATGGAAG+AGG - chr3_3:9832273-9832292 None:intergenic 45.0%
ACGATCTCAAACACGCAAGA+TGG - chr3_3:9832279-9832298 None:intergenic 45.0%
! ATCTTGCGTGTTTGAGATCG+TGG + chr3_3:9832278-9832297 Msa0441440:five_prime_UTR 45.0%
AAAAGTGGCTTTCGGCATGT+TGG - chr3_3:9832424-9832443 None:intergenic 45.0%
!! CGAGTTTTGACGATCGAATC+CGG - chr3_3:9832527-9832546 None:intergenic 45.0%
CGGATTCGATCGTCAAAACT+CGG + chr3_3:9832525-9832544 Msa0441440:CDS 45.0%
GCTAGACATAACATGCCTAC+AGG + chr3_3:9832547-9832566 Msa0441440:CDS 45.0%
!! GCATTGTTGAGTGTCGGATT+TGG - chr3_3:9832580-9832599 None:intergenic 45.0%
TTACCTCCAAGGAACACCTT+CGG - chr3_3:9832602-9832621 None:intergenic 45.0%
AGACAGAAGGACATGTAGCA+TGG - chr3_3:9832639-9832658 None:intergenic 45.0%
CTGCGCTCCTAGATAAGAAA+AGG - chr3_3:9832961-9832980 None:intergenic 45.0%
!! CTTTTCTTATCTAGGAGCGC+AGG + chr3_3:9832959-9832978 Msa0441440:intron 45.0%
!! ACTCAGGTTGGTTGCATTCT+TGG + chr3_3:9832987-9833006 Msa0441440:CDS 45.0%
GTTGCATTCTTGGCCAAATC+AGG + chr3_3:9832997-9833016 Msa0441440:CDS 45.0%
GCTATCAGAACAGTAGGTCT+CGG + chr3_3:9833046-9833065 Msa0441440:CDS 45.0%
CTATCAGAACAGTAGGTCTC+GGG + chr3_3:9833047-9833066 Msa0441440:CDS 45.0%
TGTAAACCACCATTTCCTCC+TGG - chr3_3:9833232-9833251 None:intergenic 45.0%
TTGCTATGGCTGAGACTGTT+CGG + chr3_3:9833299-9833318 Msa0441440:CDS 45.0%
GGAGGTTCTACCTCATATTC+CGG + chr3_3:9833321-9833340 Msa0441440:CDS 45.0%
TCCGGACGACATAATATTCC+AGG + chr3_3:9833339-9833358 Msa0441440:CDS 45.0%
AATTGGGGTAGTCCCATAGT+AGG + chr3_3:9833599-9833618 Msa0441440:intron 45.0%
GTCCAATTGTTGGAGGTAGA+TGG + chr3_3:9833699-9833718 Msa0441440:intron 45.0%
CTCCATCTACCTCCAACAAT+TGG - chr3_3:9833704-9833723 None:intergenic 45.0%
AGCTACAATTGTCCTTGGAG+AGG + chr3_3:9834277-9834296 Msa0441440:three_prime_UTR 45.0%
! AATTGTCCTTGGAGAGGCAT+AGG + chr3_3:9834283-9834302 Msa0441440:three_prime_UTR 45.0%
ACTCAGGGTGAACAAAGAGA+AGG - chr3_3:9834390-9834409 None:intergenic 45.0%
TTCTCTCCCTTTGTCACAGT+TGG + chr3_3:9834564-9834583 Msa0441440:three_prime_UTR 45.0%
CTCACACCAACTGTGACAAA+GGG - chr3_3:9834573-9834592 None:intergenic 45.0%
! CTTTGTCACAGTTGGTGTGA+GGG + chr3_3:9834572-9834591 Msa0441440:three_prime_UTR 45.0%
! TTTGTCACAGTTGGTGTGAG+GGG + chr3_3:9834573-9834592 Msa0441440:three_prime_UTR 45.0%
GTCGATCTAGAAAGAGGGTG+AGG - chr3_3:9827891-9827910 None:intergenic 50.0%
! CCCTCTTTCTAGATCGACTC+AGG + chr3_3:9827893-9827912 Msa0441440:five_prime_UTR 50.0%
AGGTATGCGATGACCTTCTC+TGG + chr3_3:9828555-9828574 Msa0441440:intron 50.0%
GGTATGCGATGACCTTCTCT+GGG + chr3_3:9828556-9828575 Msa0441440:intron 50.0%
AGAACTGGCTATGAGCGCTT+TGG - chr3_3:9829709-9829728 None:intergenic 50.0%
! AAAGCGCTCATAGCCAGTTC+TGG + chr3_3:9829708-9829727 Msa0441440:intron 50.0%
AAGGCTGTCACTCATGTCCT+AGG - chr3_3:9829763-9829782 None:intergenic 50.0%
TGCAAGACACTCCATTGGTG+TGG + chr3_3:9830269-9830288 Msa0441440:intron 50.0%
!! ATGTCATGGTGGATGGACAG+GGG + chr3_3:9830584-9830603 Msa0441440:intron 50.0%
!! AGTGTTGGTGGCACAATCAG+TGG - chr3_3:9830619-9830638 None:intergenic 50.0%
! AGCTCTGGCTAGAGATCGAT+TGG + chr3_3:9830806-9830825 Msa0441440:five_prime_UTR 50.0%
TGGCTAGAGATCGATTGGAG+CGG + chr3_3:9830811-9830830 Msa0441440:five_prime_UTR 50.0%
ACGAAGATATGTCCAGGGTG+TGG - chr3_3:9830856-9830875 None:intergenic 50.0%
!! TTGCAGGCCATTTTGGTGCA+TGG + chr3_3:9831299-9831318 Msa0441440:intron 50.0%
TATATGGCGGCTTCATGGCA+TGG + chr3_3:9831835-9831854 Msa0441440:five_prime_UTR 50.0%
AGCTCTTCAGTGGTTGCATC+AGG - chr3_3:9832087-9832106 None:intergenic 50.0%
GCAACCACTGAAGAGCTAAG+AGG + chr3_3:9832090-9832109 Msa0441440:five_prime_UTR 50.0%
CCAAGATCGACCAGAAAGAC+AGG - chr3_3:9832162-9832181 None:intergenic 50.0%
! CCTGTCTTTCTGGTCGATCT+TGG + chr3_3:9832159-9832178 Msa0441440:intron 50.0%
!! TGGTCGATCTTGGTGTCAGT+TGG + chr3_3:9832169-9832188 Msa0441440:intron 50.0%
!! GGTCGATCTTGGTGTCAGTT+GGG + chr3_3:9832170-9832189 Msa0441440:intron 50.0%
! GCGTGTTTGAGATCGTGGTA+TGG + chr3_3:9832283-9832302 Msa0441440:intron 50.0%
!!! TGCCGAAAGCCACTTTTTGC+AGG + chr3_3:9832427-9832446 Msa0441440:CDS 50.0%
GGCCTGCAAAAAGTGGCTTT+CGG - chr3_3:9832432-9832451 None:intergenic 50.0%
!!! GAAAGCCACTTTTTGCAGGC+CGG + chr3_3:9832431-9832450 Msa0441440:CDS 50.0%
GATCGAATCCGGCACTCATT+TGG - chr3_3:9832516-9832535 None:intergenic 50.0%
CCTTCGGCATTGTTGAGTGT+CGG - chr3_3:9832586-9832605 None:intergenic 50.0%
!! ACAATGCCGAAGGTGTTCCT+TGG + chr3_3:9832593-9832612 Msa0441440:CDS 50.0%
!! TGGCCAAATCAGGGTGTTGA+TGG + chr3_3:9833007-9833026 Msa0441440:CDS 50.0%
GCTCCATCAACACCCTGATT+TGG - chr3_3:9833013-9833032 None:intergenic 50.0%
!! AATCAGGGTGTTGATGGAGC+TGG + chr3_3:9833013-9833032 Msa0441440:CDS 50.0%
TCTTACACCAGTGGAAGGAG+CGG - chr3_3:9833206-9833225 None:intergenic 50.0%
GTAAGACTGCCAGGAGGAAA+TGG + chr3_3:9833220-9833239 Msa0441440:intron 50.0%
ATCATTTGCAGGCCGTGAAG+CGG - chr3_3:9833263-9833282 None:intergenic 50.0%
TGCTATGGCTGAGACTGTTC+GGG + chr3_3:9833300-9833319 Msa0441440:CDS 50.0%
ATGCTGTACAGGACTTGCAG+CGG + chr3_3:9834157-9834176 Msa0441440:intron 50.0%
ATGATGCCTATGCCTCTCCA+AGG - chr3_3:9834292-9834311 None:intergenic 50.0%
AGAAAGGAACGTGCCCAACT+TGG - chr3_3:9834447-9834466 None:intergenic 50.0%
CCTCACACCAACTGTGACAA+AGG - chr3_3:9834574-9834593 None:intergenic 50.0%
! CCTTTGTCACAGTTGGTGTG+AGG + chr3_3:9834571-9834590 Msa0441440:three_prime_UTR 50.0%
! TTGTCACAGTTGGTGTGAGG+GGG + chr3_3:9834574-9834593 Msa0441440:three_prime_UTR 50.0%
!! AGGGTGAGGTAAGGAGCGTT+GGG - chr3_3:9827877-9827896 None:intergenic 55.0%
CATCACTCAGCTACCCTCTC+AGG - chr3_3:9828886-9828905 None:intergenic 55.0%
CTGAGAGGGTAGCTGAGTGA+TGG + chr3_3:9828884-9828903 Msa0441440:five_prime_UTR 55.0%
AGAGGGTAGCTGAGTGATGG+TGG + chr3_3:9828887-9828906 Msa0441440:five_prime_UTR 55.0%
! ACTCTGCCCTCTGGTTCCAT+TGG + chr3_3:9828931-9828950 Msa0441440:five_prime_UTR 55.0%
TATGTCCAGGGTGTGGCAGA+TGG - chr3_3:9830849-9830868 None:intergenic 55.0%
CTTGCACGCCAAATGAGTGC+CGG + chr3_3:9832505-9832524 Msa0441440:CDS 55.0%
CCGACACTCAACAATGCCGA+AGG + chr3_3:9832583-9832602 Msa0441440:CDS 55.0%
!! ATGCCGAAGGTGTTCCTTGG+AGG + chr3_3:9832596-9832615 Msa0441440:CDS 55.0%
! CTTATCTAGGAGCGCAGGAC+TGG + chr3_3:9832964-9832983 Msa0441440:intron 55.0%
GGCAGTCTTACACCAGTGGA+AGG - chr3_3:9833211-9833230 None:intergenic 55.0%
TCCACTGGTGTAAGACTGCC+AGG + chr3_3:9833211-9833230 Msa0441440:intron 55.0%
TCCTGGCAGTCTTACACCAG+TGG - chr3_3:9833215-9833234 None:intergenic 55.0%
ACTGGTGTAAGACTGCCAGG+AGG + chr3_3:9833214-9833233 Msa0441440:intron 55.0%
AGACTGCCAGGAGGAAATGG+TGG + chr3_3:9833223-9833242 Msa0441440:intron 55.0%
TATGGCTGAGACTGTTCGGG+AGG + chr3_3:9833303-9833322 Msa0441440:CDS 55.0%
!! GGGTGAGGTAAGGAGCGTTG+GGG - chr3_3:9827876-9827895 None:intergenic 60.0%
! GAGGGTGAGGTAAGGAGCGT+TGG - chr3_3:9827878-9827897 None:intergenic 60.0%
CATCTCCATCTGCCACACCC+TGG + chr3_3:9830841-9830860 Msa0441440:five_prime_UTR 60.0%
TCAGGCCGGCCTGCAAAAAG+TGG - chr3_3:9832439-9832458 None:intergenic 60.0%
TTCCGCGAGTGGTCCAAGTC+AGG + chr3_3:9833177-9833196 Msa0441440:CDS 60.0%
! TCACAGTTGGTGTGAGGGGG+TGG + chr3_3:9834577-9834596 Msa0441440:three_prime_UTR 60.0%
! CACAGTTGGTGTGAGGGGGT+GGG + chr3_3:9834578-9834597 Msa0441440:three_prime_UTR 60.0%
! AGGAGCGCAGGACTGGACTC+AGG + chr3_3:9832971-9832990 Msa0441440:intron 65.0%
GCGCAGGACTGGACTCAGGT+TGG + chr3_3:9832975-9832994 Msa0441440:CDS 65.0%
CCACTCGCGGAAGCCTGAGA+AGG - chr3_3:9833169-9833188 None:intergenic 65.0%
CCTTCTCAGGCTTCCGCGAG+TGG + chr3_3:9833166-9833185 Msa0441440:CDS 65.0%
!! CGCCTGACTTGGACCACTCG+CGG - chr3_3:9833182-9833201 None:intergenic 65.0%
GAAGGAGCGGTCGCCTGACT+TGG - chr3_3:9833193-9833212 None:intergenic 65.0%
AGGGGGTGGGAGAGAGAGTG+AGG + chr3_3:9834591-9834610 Msa0441440:three_prime_UTR 65.0%
CAGGCGACCGCTCCTTCCAC+TGG + chr3_3:9833196-9833215 Msa0441440:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 9827744 9834723 9827744 ID=Msa0441440;Name=Msa0441440
chr3_3 mRNA 9827744 9834723 9827744 ID=Msa0441440-mRNA-1;Parent=Msa0441440;Name=Msa0441440-mRNA-1;_AED=0.10;_eAED=0.10;_QI=1485|0.92|0.85|1|0.69|0.57|14|499|212
chr3_3 exon 9827744 9827914 9827744 ID=Msa0441440-mRNA-1:exon:2050;Parent=Msa0441440-mRNA-1
chr3_3 exon 9828861 9829298 9828861 ID=Msa0441440-mRNA-1:exon:2051;Parent=Msa0441440-mRNA-1
chr3_3 exon 9830054 9830131 9830054 ID=Msa0441440-mRNA-1:exon:2052;Parent=Msa0441440-mRNA-1
chr3_3 exon 9830604 9830690 9830604 ID=Msa0441440-mRNA-1:exon:2053;Parent=Msa0441440-mRNA-1
chr3_3 exon 9830798 9830918 9830798 ID=Msa0441440-mRNA-1:exon:2054;Parent=Msa0441440-mRNA-1
chr3_3 exon 9831117 9831213 9831117 ID=Msa0441440-mRNA-1:exon:2055;Parent=Msa0441440-mRNA-1
chr3_3 exon 9831305 9831410 9831305 ID=Msa0441440-mRNA-1:exon:2056;Parent=Msa0441440-mRNA-1
chr3_3 exon 9831741 9831898 9831741 ID=Msa0441440-mRNA-1:exon:2057;Parent=Msa0441440-mRNA-1
chr3_3 exon 9832003 9832140 9832003 ID=Msa0441440-mRNA-1:exon:2058;Parent=Msa0441440-mRNA-1
chr3_3 exon 9832231 9832299 9832231 ID=Msa0441440-mRNA-1:exon:2059;Parent=Msa0441440-mRNA-1
chr3_3 exon 9832387 9832617 9832387 ID=Msa0441440-mRNA-1:exon:2060;Parent=Msa0441440-mRNA-1
chr3_3 exon 9832973 9833217 9832973 ID=Msa0441440-mRNA-1:exon:2061;Parent=Msa0441440-mRNA-1
chr3_3 exon 9833233 9833360 9833233 ID=Msa0441440-mRNA-1:exon:2062;Parent=Msa0441440-mRNA-1
chr3_3 exon 9834168 9834723 9834168 ID=Msa0441440-mRNA-1:exon:2063;Parent=Msa0441440-mRNA-1
chr3_3 five_prime_UTR 9827744 9827914 9827744 ID=Msa0441440-mRNA-1:five_prime_utr;Parent=Msa0441440-mRNA-1
chr3_3 five_prime_UTR 9828861 9829298 9828861 ID=Msa0441440-mRNA-1:five_prime_utr;Parent=Msa0441440-mRNA-1
chr3_3 five_prime_UTR 9830054 9830131 9830054 ID=Msa0441440-mRNA-1:five_prime_utr;Parent=Msa0441440-mRNA-1
chr3_3 five_prime_UTR 9830604 9830690 9830604 ID=Msa0441440-mRNA-1:five_prime_utr;Parent=Msa0441440-mRNA-1
chr3_3 five_prime_UTR 9830798 9830918 9830798 ID=Msa0441440-mRNA-1:five_prime_utr;Parent=Msa0441440-mRNA-1
chr3_3 five_prime_UTR 9831117 9831213 9831117 ID=Msa0441440-mRNA-1:five_prime_utr;Parent=Msa0441440-mRNA-1
chr3_3 five_prime_UTR 9831305 9831410 9831305 ID=Msa0441440-mRNA-1:five_prime_utr;Parent=Msa0441440-mRNA-1
chr3_3 five_prime_UTR 9831741 9831898 9831741 ID=Msa0441440-mRNA-1:five_prime_utr;Parent=Msa0441440-mRNA-1
chr3_3 five_prime_UTR 9832003 9832140 9832003 ID=Msa0441440-mRNA-1:five_prime_utr;Parent=Msa0441440-mRNA-1
chr3_3 five_prime_UTR 9832231 9832299 9832231 ID=Msa0441440-mRNA-1:five_prime_utr;Parent=Msa0441440-mRNA-1
chr3_3 five_prime_UTR 9832387 9832408 9832387 ID=Msa0441440-mRNA-1:five_prime_utr;Parent=Msa0441440-mRNA-1
chr3_3 CDS 9832409 9832617 9832409 ID=Msa0441440-mRNA-1:cds;Parent=Msa0441440-mRNA-1
chr3_3 CDS 9832973 9833217 9832973 ID=Msa0441440-mRNA-1:cds;Parent=Msa0441440-mRNA-1
chr3_3 CDS 9833233 9833360 9833233 ID=Msa0441440-mRNA-1:cds;Parent=Msa0441440-mRNA-1
chr3_3 CDS 9834168 9834224 9834168 ID=Msa0441440-mRNA-1:cds;Parent=Msa0441440-mRNA-1
chr3_3 three_prime_UTR 9834225 9834723 9834225 ID=Msa0441440-mRNA-1:three_prime_utr;Parent=Msa0441440-mRNA-1
Gene Sequence

>Msa0441440

ATGTATACTTGTCCAACATGCCGAAAGCCACTTTTTGCAGGCCGGCCTGAAAATGAAACAAACTCTAGTACAGGGGTAATATCTAGTGATGAGCAACTTGCACGCCAAATGAGTGCCGGATTCGATCGTCAAAACTCGGCTAGACATAACATGCCTACAGGATTGTTTCCAAATCCGACACTCAACAATGCCGAAGGTGTTCCTTGGAGGAGCGCAGGACTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAGGGTGTTGATGGAGCTGGTCCATCTACTGCTATCAGAACAGTAGGTCTCGGGAGAGTTCAAATGATGATGAGACATCTTGCATCTGTCGGAGAAACCTATGCTCAGACAACCTTTGATGATGCTTCTTGGAACCTTTGGCCTATTAATCCTTCTCAGGCTTCCGCGAGTGGTCCAAGTCAGGCGACCGCTCCTTCCACTGGAGGAAATGGTGGTTTACATATAAGGACCGCTTCACGGCCTGCAAATGATAATTTAGCAAATGTGCTTGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCGGACGACATAATATTCCAGGACTTGCAGCGGACAAATTCTGTTACAGTTACTGTGAATAATCTTCTCCAAATGTGA
Protein sequence

>Msa0441440

MYTCPTCRKPLFAGRPENETNSSTGVISSDEQLARQMSAGFDRQNSARHNMPTGLFPNPTLNNAEGVPWRSAGLDSGWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTTFDDASWNLWPINPSQASASGPSQATAPSTGGNGGLHIRTASRPANDNLANVLAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM*