Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441370 | XP_003598144.1 | 95.627 | 526 | 22 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1029 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441370 | sp|Q8VYC8|RIN2_ARATH | 66.858 | 522 | 161 | 3 | 1 | 522 | 1 | 510 | 0.0 | 725 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441370 | G7IVC2 | 95.627 | 526 | 22 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1029 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014170 | Msa0441370 | 0.804450 | 2.147326e-49 | -8.615850e-47 |
| Msa0168570 | Msa0441370 | 0.801987 | 6.946978e-49 | -8.615850e-47 |
| Msa0393430 | Msa0441370 | 0.830879 | 2.290338e-55 | -8.615850e-47 |
| Msa0441370 | Msa0441440 | 0.927890 | 6.248511e-92 | -8.615850e-47 |
| Msa0441370 | Msa1266670 | 0.804808 | 1.808255e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441370 | MtrunA17_Chr3g0078661 | 95.627 | 526 | 22 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1029 |
| Msa0441370 | MtrunA17_Chr5g0395481 | 27.688 | 372 | 205 | 12 | 57 | 408 | 29 | 356 | 2.71e-29 | 121 |
| Msa0441370 | MtrunA17_Chr4g0039631 | 26.904 | 394 | 219 | 12 | 57 | 422 | 29 | 381 | 7.21e-25 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441370 | AT4G25230.3 | 66.858 | 522 | 161 | 3 | 1 | 522 | 1 | 510 | 0.0 | 725 |
| Msa0441370 | AT4G25230.2 | 66.858 | 522 | 161 | 3 | 1 | 522 | 1 | 510 | 0.0 | 725 |
| Msa0441370 | AT4G25230.1 | 66.858 | 522 | 161 | 3 | 1 | 522 | 1 | 510 | 0.0 | 725 |
| Msa0441370 | AT5G51450.1 | 64.751 | 522 | 172 | 3 | 1 | 522 | 1 | 510 | 0.0 | 677 |
| Msa0441370 | AT5G51450.2 | 62.963 | 540 | 170 | 4 | 1 | 522 | 1 | 528 | 0.0 | 667 |
| Msa0441370 | AT1G65040.2 | 26.912 | 353 | 196 | 11 | 64 | 397 | 36 | 345 | 9.76e-29 | 119 |
| Msa0441370 | AT1G65040.3 | 29.545 | 264 | 143 | 8 | 140 | 397 | 48 | 274 | 7.88e-27 | 112 |
| Msa0441370 | AT3G16090.1 | 26.735 | 389 | 210 | 12 | 63 | 435 | 46 | 375 | 1.26e-26 | 113 |
| Msa0441370 | AT1G65040.4 | 25.348 | 359 | 185 | 11 | 57 | 397 | 29 | 322 | 5.90e-23 | 102 |
| Msa0441370 | AT1G65040.6 | 27.757 | 263 | 126 | 8 | 140 | 397 | 1 | 204 | 6.04e-21 | 94.4 |
| Msa0441370 | AT1G65040.1 | 35.542 | 166 | 85 | 6 | 237 | 397 | 18 | 166 | 2.73e-20 | 91.7 |
| Msa0441370 | AT1G65040.5 | 35.976 | 164 | 83 | 6 | 239 | 397 | 46 | 192 | 5.52e-20 | 90.1 |
Find 150 sgRNAs with CRISPR-Local
Find 381 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGGTATCTTATTTCTTT+TGG | 0.143623 | 3_3:+9782295 | Msa0441370:intron |
| ACTCAGGTTGGTTGCATTCT+TGG | 0.164820 | 3_3:+9786422 | Msa0441370:CDS |
| TATAACTGTAGGTTCTTTAT+TGG | 0.205185 | 3_3:+9785168 | Msa0441370:intron |
| CAACCTTTGATGATGCTTCT+TGG | 0.213908 | 3_3:+9786560 | Msa0441370:CDS |
| AAAGAAAGACTATTTATATC+TGG | 0.242098 | 3_3:-9781212 | None:intergenic |
| CTTAAATCAGATGGACTAAT+TGG | 0.259879 | 3_3:+9782587 | Msa0441370:CDS |
| CCCTTTGTCCATCATTAATA+TGG | 0.260037 | 3_3:-9782400 | None:intergenic |
| GGCCGTACTTTGTTCTTTAA+AGG | 0.264896 | 3_3:+9784106 | Msa0441370:CDS |
| CACTTTATCAAGCAGGTCTT+TGG | 0.274479 | 3_3:+9784072 | Msa0441370:CDS |
| GTTGCATTCTTGGCCAAATC+AGG | 0.276468 | 3_3:+9786432 | Msa0441370:CDS |
| TGTGAAGTTTATAGCAATTT+CGG | 0.299921 | 3_3:+9782502 | Msa0441370:CDS |
| ATATGAATTGCAGGCCATTT+TGG | 0.312923 | 3_3:+9784731 | Msa0441370:intron |
| ATGATGCTTCTTGGAACCTT+TGG | 0.317525 | 3_3:+9786569 | Msa0441370:CDS |
| GCAATGATAAACCGCATAAA+AGG | 0.319003 | 3_3:+9785453 | Msa0441370:CDS |
| TGCATAGATGTTTCAAGCTC+TGG | 0.346925 | 3_3:+9784229 | Msa0441370:intron |
| TCTTTCTCTCTCTGTTGATT+CGG | 0.351492 | 3_3:+9781265 | Msa0441370:five_prime_UTR |
| GATTTCAGTTACTTGACATA+TGG | 0.351948 | 3_3:+9784760 | Msa0441370:CDS |
| TTGGTCATTACTTGTATATA+TGG | 0.354551 | 3_3:+9785257 | Msa0441370:CDS |
| AGCAATTTCGGCGGTTTCTA+CGG | 0.359887 | 3_3:+9782514 | Msa0441370:CDS |
| TGGCCAAATCAGGGTGTTGA+TGG | 0.364216 | 3_3:+9786442 | Msa0441370:CDS |
| GCATTGTTGAGTGTCGGATT+TGG | 0.365198 | 3_3:-9786014 | None:intergenic |
| CCATGACATTGAGTTACCTT+TGG | 0.374744 | 3_3:+9782640 | Msa0441370:CDS |
| AAGAGAAAGAGAGAGAATTT+AGG | 0.382097 | 3_3:-9781246 | None:intergenic |
| GCTCCATCAACACCCTGATT+TGG | 0.384253 | 3_3:-9786445 | None:intergenic |
| TATCAAGCAGTTTAGTTGTT+CGG | 0.384919 | 3_3:-9784815 | None:intergenic |
| TTGTATATATGGCGGCTTCA+TGG | 0.385653 | 3_3:+9785268 | Msa0441370:CDS |
| CTGAAATCCATGCACCAAAA+TGG | 0.388541 | 3_3:-9784745 | None:intergenic |
| GAGGGTGAGGTAAGGAGCGT+TGG | 0.393013 | 3_3:-9781314 | None:intergenic |
| TGACATATGGATTCATCATT+CGG | 0.402304 | 3_3:+9784773 | Msa0441370:CDS |
| GATCGAATCCGGCACTCATT+TGG | 0.409102 | 3_3:-9785950 | None:intergenic |
| TTTGGCTATTAATCCTTCTC+AGG | 0.409935 | 3_3:+9786587 | Msa0441370:CDS |
| AGCTCTTCAGTGGTTGCATC+AGG | 0.411339 | 3_3:-9785522 | None:intergenic |
| AGGGTGAGGTAAGGAGCGTT+GGG | 0.418128 | 3_3:-9781313 | None:intergenic |
| TAAAAGGCTTTATTAGACTA+AGG | 0.420440 | 3_3:+9785469 | Msa0441370:CDS |
| CATGACATTGAGTTACCTTT+GGG | 0.425509 | 3_3:+9782641 | Msa0441370:CDS |
| CGTTAATTATGTCATTTACA+AGG | 0.430759 | 3_3:+9783547 | Msa0441370:CDS |
| CTTATCTAGGAGCGCAGGAC+TGG | 0.436821 | 3_3:+9786399 | Msa0441370:intron |
| AAGGCTCAAAGAAAAGTAAC+AGG | 0.437902 | 3_3:-9784604 | None:intergenic |
| GAAGGAGCGGTCGCCTGACT+TGG | 0.439287 | 3_3:-9786622 | None:intergenic |
| GGGAATACTTATCCGGAACT+TGG | 0.439914 | 3_3:+9785198 | Msa0441370:CDS |
| ATTTCATAAACTCTGCCCTC+TGG | 0.457661 | 3_3:+9782360 | Msa0441370:five_prime_UTR |
| TTGGGTTTGTATACCACCAT+AGG | 0.461103 | 3_3:+9782659 | Msa0441370:CDS |
| GGGTTTCTGCAATTATCAAT+CGG | 0.468555 | 3_3:-9781292 | None:intergenic |
| AATCAGATGGACTAATTGGC+TGG | 0.468773 | 3_3:+9782591 | Msa0441370:CDS |
| AAGAAAGACTATTTATATCT+GGG | 0.476596 | 3_3:-9781211 | None:intergenic |
| AAGCAGGTCTTTGGTCAACT+TGG | 0.476603 | 3_3:+9784081 | Msa0441370:CDS |
| CTGTAGGTTCTTTATTGGAA+TGG | 0.478929 | 3_3:+9785173 | Msa0441370:intron |
| TGGCTGGAATTCAATTCACT+TGG | 0.487314 | 3_3:+9782607 | Msa0441370:CDS |
| AATGAAACAAACTCTAGTAC+AGG | 0.490198 | 3_3:+9785897 | Msa0441370:CDS |
| AATGGAAGGGAATACTTATC+CGG | 0.492575 | 3_3:+9785191 | Msa0441370:CDS |
| CATCACTCAGCTACCCTCTC+AGG | 0.493368 | 3_3:-9782321 | None:intergenic |
| GCTGAAGTTATTATTAGTAA+TGG | 0.494317 | 3_3:+9782478 | Msa0441370:exon |
| ACAATGCCGAAGGTGTTCCT+TGG | 0.494423 | 3_3:+9786030 | Msa0441370:CDS |
| CAGGCGACCGCTCCTTCCAC+TGG | 0.494953 | 3_3:+9786628 | Msa0441370:CDS |
| TTGCTTATGACAGGAACCTA+TGG | 0.496458 | 3_3:+9785656 | Msa0441370:intron |
| AGCTCTGGCTAGAGATCGAT+TGG | 0.496608 | 3_3:+9784244 | Msa0441370:CDS |
| GCTATCAGAACAGTAGGTCT+CGG | 0.496877 | 3_3:+9786481 | Msa0441370:CDS |
| GCTTCCGCGTGGTCCAAGTC+AGG | 0.498463 | 3_3:+9786609 | Msa0441370:CDS |
| TTACCTCCAAGGAACACCTT+CGG | 0.500316 | 3_3:-9786036 | None:intergenic |
| TAGTGCTAACACCAATCTCC+TGG | 0.500933 | 3_3:-9782450 | None:intergenic |
| ACTCTGCCCTCTGGTTCCAT+TGG | 0.501081 | 3_3:+9782369 | Msa0441370:five_prime_UTR |
| ATCTTGCGTGTTTGAGATCG+TGG | 0.507271 | 3_3:+9785715 | Msa0441370:CDS |
| ATGTTGAACCATATTAATGA+TGG | 0.509494 | 3_3:+9782392 | Msa0441370:five_prime_UTR |
| TTGAAGTCAGATGAAAATCC+AGG | 0.510577 | 3_3:+9782432 | Msa0441370:five_prime_UTR |
| TATGTCCAGGGTGTGGCAGA+TGG | 0.511444 | 3_3:-9784284 | None:intergenic |
| CCATATTAATGATGGACAAA+GGG | 0.512209 | 3_3:+9782400 | Msa0441370:five_prime_UTR |
| CAGATGAAAATCCAGGAGAT+TGG | 0.514081 | 3_3:+9782439 | Msa0441370:five_prime_UTR |
| TTAGAGAAGCTTAAATCAGA+TGG | 0.514153 | 3_3:+9782578 | Msa0441370:CDS |
| ATCAGTTTACGAGTTTCAGA+AGG | 0.516795 | 3_3:-9783515 | None:intergenic |
| AGGTTCTTTATTGGAATGGA+AGG | 0.516889 | 3_3:+9785177 | Msa0441370:intron |
| GTCATTACTTGTATATATGG+CGG | 0.518434 | 3_3:+9785260 | Msa0441370:CDS |
| ACTGTTCTGATAGCAGTAGA+TGG | 0.518649 | 3_3:-9786472 | None:intergenic |
| AAAAGTGGCTTTCGGCATGT+TGG | 0.520638 | 3_3:-9785858 | None:intergenic |
| TTGCATTCTTGGCCAAATCA+GGG | 0.524173 | 3_3:+9786433 | Msa0441370:CDS |
| GACAAGTATACATCTCAGTC+AGG | 0.526090 | 3_3:-9785836 | None:intergenic |
| TATTGCTTTCGAGACACTGC+AGG | 0.527283 | 3_3:+9784631 | Msa0441370:CDS |
| TACCTTTAAAGAACAAAGTA+CGG | 0.531458 | 3_3:-9784108 | None:intergenic |
| ATGCCGAAGGTGTTCCTTGG+AGG | 0.534288 | 3_3:+9786033 | Msa0441370:CDS |
| GGAATACTTATCCGGAACTT+GGG | 0.534492 | 3_3:+9785199 | Msa0441370:CDS |
| CTATCAGAACAGTAGGTCTC+GGG | 0.534822 | 3_3:+9786482 | Msa0441370:CDS |
| CCTTCGGCATTGTTGAGTGT+CGG | 0.535969 | 3_3:-9786020 | None:intergenic |
| CCCTCTTTCTAGATCGACTC+AGG | 0.536632 | 3_3:+9781332 | Msa0441370:five_prime_UTR |
| ATATCCTCTTAGCTCTTCAG+TGG | 0.537382 | 3_3:-9785532 | None:intergenic |
| ACGATCTCAAACACGCAAGA+TGG | 0.539779 | 3_3:-9785713 | None:intergenic |
| AGGTCTTTGGTCAACTTGGT+TGG | 0.540663 | 3_3:+9784085 | Msa0441370:CDS |
| TAATATGGTTCAACATCCAA+TGG | 0.545197 | 3_3:-9782385 | None:intergenic |
| TGGGTTTGTATACCACCATA+GGG | 0.545778 | 3_3:+9782660 | Msa0441370:CDS |
| CCTTCTTAATCTTAGTCTCA+AGG | 0.549610 | 3_3:+9782715 | Msa0441370:CDS |
| TATATGGCGGCTTCATGGCA+TGG | 0.551008 | 3_3:+9785273 | Msa0441370:CDS |
| ATATACACGAAGATATGTCC+AGG | 0.553719 | 3_3:-9784297 | None:intergenic |
| ATTAGACTAAGGATAGCTCT+AGG | 0.556983 | 3_3:+9785480 | Msa0441370:CDS |
| ACAATTCGTCAATAACCCTA+TGG | 0.557624 | 3_3:-9782675 | None:intergenic |
| AGTGTTGGTGGCACAATCAG+TGG | 0.557838 | 3_3:-9784053 | None:intergenic |
| CTTGAAATATATAGCACACA+TGG | 0.558537 | 3_3:+9784569 | Msa0441370:CDS |
| TCTAGAAAGAGGGTGAGGTA+AGG | 0.558730 | 3_3:-9781322 | None:intergenic |
| CCTTGAGACTAAGATTAAGA+AGG | 0.563725 | 3_3:-9782715 | None:intergenic |
| ATGAGACATCTTGCATCTGT+CGG | 0.563921 | 3_3:+9786520 | Msa0441370:CDS |
| ACCATATTAATGATGGACAA+AGG | 0.565998 | 3_3:+9782399 | Msa0441370:five_prime_UTR |
| ACCTGAGTCGATCTAGAAAG+AGG | 0.566331 | 3_3:-9781333 | None:intergenic |
| GGTTCTTTATTGGAATGGAA+GGG | 0.567480 | 3_3:+9785178 | Msa0441370:intron |
| AATCAGGGTGTTGATGGAGC+TGG | 0.572135 | 3_3:+9786448 | Msa0441370:CDS |
| ATAGCACTGCATCTACAAGA+TGG | 0.573918 | 3_3:-9785300 | None:intergenic |
| TCAAACACGCAAGATGGAAG+AGG | 0.575860 | 3_3:-9785707 | None:intergenic |
| CTTGCACGCCAAATGAGTGC+CGG | 0.580024 | 3_3:+9785942 | Msa0441370:CDS |
| GAAAAGTAACAGGAACATAG+AGG | 0.580540 | 3_3:-9784594 | None:intergenic |
| CCACCAACACTTTATCAAGC+AGG | 0.580628 | 3_3:+9784065 | Msa0441370:CDS |
| AGGAGCGCAGGACTGGACTC+AGG | 0.581791 | 3_3:+9786406 | Msa0441370:intron |
| CATCTCCATCTGCCACACCC+TGG | 0.582406 | 3_3:+9784279 | Msa0441370:CDS |
| ATGACAGGAACCTATGGCTA+AGG | 0.582916 | 3_3:+9785662 | Msa0441370:intron |
| ATCAAAGGTTGTCTGAGCAT+AGG | 0.588207 | 3_3:-9786548 | None:intergenic |
| GGGTGAGGTAAGGAGCGTTG+GGG | 0.590545 | 3_3:-9781312 | None:intergenic |
| CGGATTCGATCGTCAAAACT+CGG | 0.591793 | 3_3:+9785962 | Msa0441370:CDS |
| GCTAGACATAACATGCCTAC+AGG | 0.591975 | 3_3:+9785984 | Msa0441370:CDS |
| GTCTCGAAAGCAATACTCAA+AGG | 0.593508 | 3_3:-9784623 | None:intergenic |
| CCTGCTTGATAAAGTGTTGG+TGG | 0.595637 | 3_3:-9784065 | None:intergenic |
| GTCGATCTAGAAAGAGGGTG+AGG | 0.599358 | 3_3:-9781327 | None:intergenic |
| TCCTGGCAGTCTTACACCAG+TGG | 0.599394 | 3_3:-9786644 | None:intergenic |
| GCAACCACTGAAGAGCTAAG+AGG | 0.609666 | 3_3:+9785528 | Msa0441370:CDS |
| ATGAAACAAACTCTAGTACA+GGG | 0.610423 | 3_3:+9785898 | Msa0441370:CDS |
| GCGCAGGACTGGACTCAGGT+TGG | 0.610826 | 3_3:+9786410 | Msa0441370:CDS |
| TCTACTGCTATCAGAACAGT+AGG | 0.612039 | 3_3:+9786475 | Msa0441370:CDS |
| GGCAGTCTTACACCAGTGGA+AGG | 0.612218 | 3_3:-9786640 | None:intergenic |
| GTTCCAAGAAGCATCATCAA+AGG | 0.612545 | 3_3:-9786563 | None:intergenic |
| ACGAAGATATGTCCAGGGTG+TGG | 0.615696 | 3_3:-9784291 | None:intergenic |
| TGAGAAGGATTAATAGCCAA+AGG | 0.617605 | 3_3:-9786585 | None:intergenic |
| CCTGAGTCGATCTAGAAAGA+GGG | 0.617855 | 3_3:-9781332 | None:intergenic |
| ATTCATCATTCGGCTTGCAG+TGG | 0.618403 | 3_3:+9784783 | Msa0441370:CDS |
| CTGCTTGATACATTAACCGC+AGG | 0.618547 | 3_3:+9784828 | Msa0441370:CDS |
| TCAGTTTACGAGTTTCAGAA+GGG | 0.618605 | 3_3:-9783514 | None:intergenic |
| GACCACGCGGAAGCCTGAGA+AGG | 0.618606 | 3_3:-9786600 | None:intergenic |
| GGATTTGGAAACAATCCTGT+AGG | 0.631882 | 3_3:-9785999 | None:intergenic |
| CCAAAGGTAACTCAATGTCA+TGG | 0.635359 | 3_3:-9782640 | None:intergenic |
| GATTGGTGTTAGCACTAGAG+AGG | 0.640269 | 3_3:+9782456 | Msa0441370:five_prime_UTR |
| TCTTACACCAGTGGAAGGAG+CGG | 0.646620 | 3_3:-9786635 | None:intergenic |
| AGAGGGTAGCTGAGTGATGG+TGG | 0.647475 | 3_3:+9782325 | Msa0441370:five_prime_UTR |
| TTGAAATATATAGCACACAT+GGG | 0.660600 | 3_3:+9784570 | Msa0441370:CDS |
| TATTAATGATGGACAAAGGG+CGG | 0.662357 | 3_3:+9782403 | Msa0441370:five_prime_UTR |
| TGAAACAAACTCTAGTACAG+GGG | 0.662791 | 3_3:+9785899 | Msa0441370:CDS |
| CCGACACTCAACAATGCCGA+AGG | 0.664560 | 3_3:+9786020 | Msa0441370:CDS |
| TCAACATCCAATGGAACCAG+AGG | 0.665506 | 3_3:-9782376 | None:intergenic |
| CTGAGAGGGTAGCTGAGTGA+TGG | 0.668106 | 3_3:+9782322 | Msa0441370:five_prime_UTR |
| AGACCTGCTTGATAAAGTGT+TGG | 0.670804 | 3_3:-9784068 | None:intergenic |
| ATGGTGGTATACAAACCCAA+AGG | 0.677582 | 3_3:-9782656 | None:intergenic |
| ATTCGTCAATAACCCTATGG+TGG | 0.680473 | 3_3:-9782672 | None:intergenic |
| CAACATCCAATGGAACCAGA+GGG | 0.682440 | 3_3:-9782375 | None:intergenic |
| ATCCTTCTCAGGCTTCCGCG+TGG | 0.687426 | 3_3:+9786598 | Msa0441370:CDS |
| TATACACGAAGATATGTCCA+GGG | 0.692791 | 3_3:-9784296 | None:intergenic |
| GAAGTTTATAGCAATTTCGG+CGG | 0.708760 | 3_3:+9782505 | Msa0441370:CDS |
| TGGCTAGAGATCGATTGGAG+CGG | 0.719750 | 3_3:+9784249 | Msa0441370:CDS |
| GTCGCCTGACTTGGACCACG+CGG | 0.725070 | 3_3:-9786613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATAAAAATCATTTTTTT+AGG | - | chr3_3:9781430-9781449 | None:intergenic | 10.0% |
| !! | TATAAAGTATAAATAGATTA+TGG | + | chr3_3:9782767-9782786 | Msa0441370:intron | 10.0% |
| !!! | AAAATCATTTTTTTAGGAAA+TGG | - | chr3_3:9781424-9781443 | None:intergenic | 15.0% |
| !! | AATGAATCAAAAAATTCAAA+GGG | - | chr3_3:9781464-9781483 | None:intergenic | 15.0% |
| !! | AAATGAATCAAAAAATTCAA+AGG | - | chr3_3:9781465-9781484 | None:intergenic | 15.0% |
| !!! | TTGAATTTTTTGATTCATTT+TGG | + | chr3_3:9781465-9781484 | Msa0441370:intron | 15.0% |
| !!! | TTTTTCTATTTGGATTTTTT+TGG | + | chr3_3:9782224-9782243 | Msa0441370:intron | 15.0% |
| !! | TTTGAAAAGTTTAAATGTAA+TGG | + | chr3_3:9783946-9783965 | Msa0441370:intron | 15.0% |
| !! | TTGAAAAGTTTAAATGTAAT+GGG | + | chr3_3:9783947-9783966 | Msa0441370:intron | 15.0% |
| !!! | AATTGTTATTTATTATGTCA+TGG | + | chr3_3:9784007-9784026 | Msa0441370:intron | 15.0% |
| !!! | ATTATTGTAATTTTATAGCT+TGG | + | chr3_3:9784499-9784518 | Msa0441370:intron | 15.0% |
| !! | AATAAAAATTGAAAGATTTC+AGG | - | chr3_3:9785018-9785037 | None:intergenic | 15.0% |
| !! | CTACATATAAAAAACTAAAA+TGG | - | chr3_3:9786327-9786346 | None:intergenic | 15.0% |
| !! | AATAATTAATAATTGTAGAG+TGG | - | chr3_3:9786830-9786849 | None:intergenic | 15.0% |
| !! | AAGAAAGACTATTTATATCT+GGG | - | chr3_3:9781214-9781233 | None:intergenic | 20.0% |
| !! | AAAGAAAGACTATTTATATC+TGG | - | chr3_3:9781215-9781234 | None:intergenic | 20.0% |
| !! | TTAGTTAAAATCTCATTGAT+CGG | + | chr3_3:9781571-9781590 | Msa0441370:intron | 20.0% |
| !!! | TGTTTTTGTTCTTTCAAAAT+TGG | + | chr3_3:9781715-9781734 | Msa0441370:intron | 20.0% |
| !!! | CATTAAACTCTTTTTCTATT+TGG | + | chr3_3:9782214-9782233 | Msa0441370:intron | 20.0% |
| !!! | AGTGTAATTTTCATTCTTTT+AGG | + | chr3_3:9782949-9782968 | Msa0441370:intron | 20.0% |
| !!! | GTGTAATTTTCATTCTTTTA+GGG | + | chr3_3:9782950-9782969 | Msa0441370:intron | 20.0% |
| !!! | TGTAATTTTCATTCTTTTAG+GGG | + | chr3_3:9782951-9782970 | Msa0441370:intron | 20.0% |
| !! | ACATGATATGATAAGTAATA+AGG | - | chr3_3:9783220-9783239 | None:intergenic | 20.0% |
| !!! | ACATGTATTTTTATGAGAAA+AGG | + | chr3_3:9783318-9783337 | Msa0441370:intron | 20.0% |
| !!! | CATGTATTTTTATGAGAAAA+GGG | + | chr3_3:9783319-9783338 | Msa0441370:intron | 20.0% |
| !!! | TACTTTTGAAGTAATTTAGT+AGG | + | chr3_3:9783374-9783393 | Msa0441370:intron | 20.0% |
| !! | CAACATATAAAAGGAAAATA+AGG | - | chr3_3:9783753-9783772 | None:intergenic | 20.0% |
| !!! | CTTATTTTCCTTTTATATGT+TGG | + | chr3_3:9783751-9783770 | Msa0441370:intron | 20.0% |
| !! | AATTTATAAGCTAGTTAACA+TGG | + | chr3_3:9783789-9783808 | Msa0441370:intron | 20.0% |
| !! | TGATACAATGTATATTTACT+AGG | - | chr3_3:9783924-9783943 | None:intergenic | 20.0% |
| !!! | CTTAGATTTAATTTTCGTAA+AGG | + | chr3_3:9784458-9784477 | Msa0441370:intron | 20.0% |
| !!! | GGATTTAATTAGATTTTTCA+TGG | + | chr3_3:9784704-9784723 | Msa0441370:intron | 20.0% |
| !! | TAATAACTAATCAACTCTAT+TGG | + | chr3_3:9784883-9784902 | Msa0441370:intron | 20.0% |
| !! | AATAACTAATCAACTCTATT+GGG | + | chr3_3:9784884-9784903 | Msa0441370:intron | 20.0% |
| !! | AAGAGAATCATATATAAAAC+AGG | - | chr3_3:9784930-9784949 | None:intergenic | 20.0% |
| !! | AAGAAAGTTGAATGAAAAAA+TGG | - | chr3_3:9784985-9785004 | None:intergenic | 20.0% |
| !!! | GTTCTTAATTTGCATAAATT+TGG | + | chr3_3:9785360-9785379 | Msa0441370:intron | 20.0% |
| !! | AAAAGAAAATCAATAAACAC+AGG | - | chr3_3:9785415-9785434 | None:intergenic | 20.0% |
| !!! | AAATTTAATTTGCTTATGAC+AGG | + | chr3_3:9785647-9785666 | Msa0441370:intron | 20.0% |
| !!! | AACCAGTTTTTTTTCAAAAT+AGG | + | chr3_3:9786871-9786890 | Msa0441370:intron | 20.0% |
| !!! | TTTTGATTCATTTTGGTTGT+TGG | + | chr3_3:9781472-9781491 | Msa0441370:intron | 25.0% |
| !!! | TTTGATTCATTTTGGTTGTT+GGG | + | chr3_3:9781473-9781492 | Msa0441370:intron | 25.0% |
| !! | TTCTCTAACTTGTATTGAAT+TGG | + | chr3_3:9781628-9781647 | Msa0441370:intron | 25.0% |
| !!! | TTTAGTGCATATGTTTTGAT+TGG | + | chr3_3:9781799-9781818 | Msa0441370:intron | 25.0% |
| ! | AACCACTAATTACACATATT+GGG | - | chr3_3:9781929-9781948 | None:intergenic | 25.0% |
| !! | TGATAGTTCTTTTCAAAAAG+CGG | + | chr3_3:9782099-9782118 | Msa0441370:intron | 25.0% |
| !!! | TTAGGGTATCTTATTTCTTT+TGG | + | chr3_3:9782295-9782314 | Msa0441370:intron | 25.0% |
| ! | ATGTTGAACCATATTAATGA+TGG | + | chr3_3:9782392-9782411 | Msa0441370:five_prime_UTR | 25.0% |
| ! | GCTGAAGTTATTATTAGTAA+TGG | + | chr3_3:9782478-9782497 | Msa0441370:exon | 25.0% |
| ! | TGTGAAGTTTATAGCAATTT+CGG | + | chr3_3:9782502-9782521 | Msa0441370:CDS | 25.0% |
| !! | TGCTTCATTTTAAACTAAGA+GGG | + | chr3_3:9782887-9782906 | Msa0441370:intron | 25.0% |
| !! | GTAATTTTCATTCTTTTAGG+GGG | + | chr3_3:9782952-9782971 | Msa0441370:intron | 25.0% |
| ! | TTTGGATCATTCAAAAGTAA+AGG | - | chr3_3:9783025-9783044 | None:intergenic | 25.0% |
| ! | AATGATCCAAACATAGATTA+TGG | + | chr3_3:9783034-9783053 | Msa0441370:intron | 25.0% |
| ! | AAGAATTTATAGTTCATCCT+AGG | + | chr3_3:9783181-9783200 | Msa0441370:intron | 25.0% |
| ! | TTCAAAAGTAAAGAAAGAGA+GGG | - | chr3_3:9783364-9783383 | None:intergenic | 25.0% |
| ! | TATACCATGGAAAAAAATCA+TGG | - | chr3_3:9783412-9783431 | None:intergenic | 25.0% |
| !! | CGTTAATTATGTCATTTACA+AGG | + | chr3_3:9783547-9783566 | Msa0441370:CDS | 25.0% |
| !!! | TTAGTTCTTTTCTTTTTCTG+TGG | + | chr3_3:9783570-9783589 | Msa0441370:intron | 25.0% |
| !! | TGTTATTTATTATGTCATGG+TGG | + | chr3_3:9784010-9784029 | Msa0441370:intron | 25.0% |
| !! | TACCTTTAAAGAACAAAGTA+CGG | - | chr3_3:9784111-9784130 | None:intergenic | 25.0% |
| !!! | AGCATTGTTATTCATTTTCT+TGG | + | chr3_3:9784322-9784341 | Msa0441370:CDS | 25.0% |
| ! | TTTAACATAAATGACAGCTA+GGG | + | chr3_3:9784402-9784421 | Msa0441370:intron | 25.0% |
| ! | TTGAAATATATAGCACACAT+GGG | + | chr3_3:9784570-9784589 | Msa0441370:CDS | 25.0% |
| !! | GATTAGTTATTATAAGTTCC+AGG | - | chr3_3:9784875-9784894 | None:intergenic | 25.0% |
| ! | ATAACTAATCAACTCTATTG+GGG | + | chr3_3:9784885-9784904 | Msa0441370:intron | 25.0% |
| ! | TCACACTAATCAGATTATTT+CGG | - | chr3_3:9785073-9785092 | None:intergenic | 25.0% |
| ! | ATTTGAACTTCCTAATTATG+TGG | + | chr3_3:9785145-9785164 | Msa0441370:intron | 25.0% |
| ! | TACAGTTATACCACATAATT+AGG | - | chr3_3:9785158-9785177 | None:intergenic | 25.0% |
| ! | TAATTATGTGGTATAACTGT+AGG | + | chr3_3:9785157-9785176 | Msa0441370:intron | 25.0% |
| ! | TATAACTGTAGGTTCTTTAT+TGG | + | chr3_3:9785168-9785187 | Msa0441370:intron | 25.0% |
| ! | TTGGTCATTACTTGTATATA+TGG | + | chr3_3:9785257-9785276 | Msa0441370:CDS | 25.0% |
| !!! | TTATTGATTTTCTTTTGAGC+AGG | + | chr3_3:9785419-9785438 | Msa0441370:intron | 25.0% |
| !!! | TAAAAGGCTTTATTAGACTA+AGG | + | chr3_3:9785469-9785488 | Msa0441370:CDS | 25.0% |
| ! | AAATCAGTTCAGAAACATAT+AGG | - | chr3_3:9785801-9785820 | None:intergenic | 25.0% |
| !!! | TATGTTTCTGAACTGATTTT+AGG | + | chr3_3:9785802-9785821 | Msa0441370:intron | 25.0% |
| ! | CAAACACTATAGTAGTAAAA+AGG | + | chr3_3:9786186-9786205 | Msa0441370:intron | 25.0% |
| ! | ACTATAGTAGTAAAAAGGAT+CGG | + | chr3_3:9786191-9786210 | Msa0441370:intron | 25.0% |
| ! | GAGTTATATCCCATATATAT+GGG | - | chr3_3:9786225-9786244 | None:intergenic | 25.0% |
| ! | TGAGTTATATCCCATATATA+TGG | - | chr3_3:9786226-9786245 | None:intergenic | 25.0% |
| ! | CTAAATAAATGAAGACTTGT+AGG | - | chr3_3:9786258-9786277 | None:intergenic | 25.0% |
| !!! | TGCCTATTTTGAAAAAAAAC+TGG | - | chr3_3:9786876-9786895 | None:intergenic | 25.0% |
| ! | TATCTGGGTCAATAATTTTG+CGG | - | chr3_3:9781199-9781218 | None:intergenic | 30.0% |
| AAGAGAAAGAGAGAGAATTT+AGG | - | chr3_3:9781249-9781268 | None:intergenic | 30.0% | |
| TGCAAATTTCTAATCCTCTT+TGG | + | chr3_3:9781511-9781530 | Msa0441370:intron | 30.0% | |
| GCAAATTTCTAATCCTCTTT+GGG | + | chr3_3:9781512-9781531 | Msa0441370:intron | 30.0% | |
| CAAATTTCTAATCCTCTTTG+GGG | + | chr3_3:9781513-9781532 | Msa0441370:intron | 30.0% | |
| !!! | TTTTAGGGTTCTATACGATT+TGG | + | chr3_3:9781541-9781560 | Msa0441370:intron | 30.0% |
| TTAAAATCTCATTGATCGGT+AGG | + | chr3_3:9781575-9781594 | Msa0441370:intron | 30.0% | |
| GTTCTTTCAAAATTGGTTGT+TGG | + | chr3_3:9781722-9781741 | Msa0441370:intron | 30.0% | |
| CAAAGTTGCAAAAATCAGAT+TGG | - | chr3_3:9781852-9781871 | None:intergenic | 30.0% | |
| ! | CAATCTGATTTTTGCAACTT+TGG | + | chr3_3:9781850-9781869 | Msa0441370:intron | 30.0% |
| ! | TGGAGTTTTACCAAAATCAA+AGG | + | chr3_3:9781870-9781889 | Msa0441370:intron | 30.0% |
| ATCCCAATATGTGTAATTAG+TGG | + | chr3_3:9781924-9781943 | Msa0441370:intron | 30.0% | |
| CAACCACTAATTACACATAT+TGG | - | chr3_3:9781930-9781949 | None:intergenic | 30.0% | |
| TTTAGTAGTTGAAAGTAGTG+AGG | + | chr3_3:9781973-9781992 | Msa0441370:intron | 30.0% | |
| GTTTAATGAATGTGCATTGA+CGG | - | chr3_3:9782202-9782221 | None:intergenic | 30.0% | |
| TTGTTCATTCTTTCTCTGTT+AGG | + | chr3_3:9782277-9782296 | Msa0441370:intron | 30.0% | |
| TGTTCATTCTTTCTCTGTTA+GGG | + | chr3_3:9782278-9782297 | Msa0441370:intron | 30.0% | |
| TAATATGGTTCAACATCCAA+TGG | - | chr3_3:9782388-9782407 | None:intergenic | 30.0% | |
| !! | ACCATATTAATGATGGACAA+AGG | + | chr3_3:9782399-9782418 | Msa0441370:five_prime_UTR | 30.0% |
| !! | CCATATTAATGATGGACAAA+GGG | + | chr3_3:9782400-9782419 | Msa0441370:five_prime_UTR | 30.0% |
| TTAGAGAAGCTTAAATCAGA+TGG | + | chr3_3:9782578-9782597 | Msa0441370:CDS | 30.0% | |
| !! | CTTAAATCAGATGGACTAAT+TGG | + | chr3_3:9782587-9782606 | Msa0441370:CDS | 30.0% |
| ! | GTGCTTCATTTTAAACTAAG+AGG | + | chr3_3:9782886-9782905 | Msa0441370:intron | 30.0% |
| CAAGTAGTGTTAAAGTAGAA+TGG | + | chr3_3:9782915-9782934 | Msa0441370:intron | 30.0% | |
| ACTCATCCATAATCTATGTT+TGG | - | chr3_3:9783043-9783062 | None:intergenic | 30.0% | |
| TACTTATCATATCATGTTGC+TGG | + | chr3_3:9783223-9783242 | Msa0441370:intron | 30.0% | |
| TAAGCTCACAAAAGTTGTTA+TGG | + | chr3_3:9783262-9783281 | Msa0441370:intron | 30.0% | |
| TCATAAAAATACATGTCTGC+AGG | - | chr3_3:9783314-9783333 | None:intergenic | 30.0% | |
| TCAAAAGTAAAGAAAGAGAG+GGG | - | chr3_3:9783363-9783382 | None:intergenic | 30.0% | |
| CTTCAAAAGTAAAGAAAGAG+AGG | - | chr3_3:9783365-9783384 | None:intergenic | 30.0% | |
| AGTAATTTAGTAGGCTACAA+TGG | + | chr3_3:9783383-9783402 | Msa0441370:intron | 30.0% | |
| GAAAGAACAATGTTGATGTA+GGG | - | chr3_3:9783443-9783462 | None:intergenic | 30.0% | |
| AGAAAGAACAATGTTGATGT+AGG | - | chr3_3:9783444-9783463 | None:intergenic | 30.0% | |
| AACATTGTTCTTTCTGTTCA+TGG | + | chr3_3:9783449-9783468 | Msa0441370:intron | 30.0% | |
| TAAGGAACACGATGAAAAAA+GGG | - | chr3_3:9783735-9783754 | None:intergenic | 30.0% | |
| ATAAGGAACACGATGAAAAA+AGG | - | chr3_3:9783736-9783755 | None:intergenic | 30.0% | |
| ACACTAAGCCAACATATAAA+AGG | - | chr3_3:9783762-9783781 | None:intergenic | 30.0% | |
| !! | TTATATGTTGGCTTAGTGTT+TGG | + | chr3_3:9783763-9783782 | Msa0441370:intron | 30.0% |
| !! | AGTTTGTTGACTTAGAGATA+TGG | + | chr3_3:9783882-9783901 | Msa0441370:intron | 30.0% |
| ! | ATTTATTATGTCATGGTGGA+TGG | + | chr3_3:9784014-9784033 | Msa0441370:intron | 30.0% |
| ! | GCTGTCATTTATGTTAAACA+AGG | - | chr3_3:9784400-9784419 | None:intergenic | 30.0% |
| GTTTAACATAAATGACAGCT+AGG | + | chr3_3:9784401-9784420 | Msa0441370:intron | 30.0% | |
| TAAATCTAAGCATGCTCAAA+CGG | - | chr3_3:9784448-9784467 | None:intergenic | 30.0% | |
| ! | ACTTCTCTTTTTATGCTTCT+AGG | + | chr3_3:9784534-9784553 | Msa0441370:intron | 30.0% |
| !!! | CTTTTTATGCTTCTAGGATA+AGG | + | chr3_3:9784540-9784559 | Msa0441370:intron | 30.0% |
| CTTGAAATATATAGCACACA+TGG | + | chr3_3:9784569-9784588 | Msa0441370:CDS | 30.0% | |
| GATTTCAGTTACTTGACATA+TGG | + | chr3_3:9784760-9784779 | Msa0441370:CDS | 30.0% | |
| TGACATATGGATTCATCATT+CGG | + | chr3_3:9784773-9784792 | Msa0441370:CDS | 30.0% | |
| TATCAAGCAGTTTAGTTGTT+CGG | - | chr3_3:9784818-9784837 | None:intergenic | 30.0% | |
| TAACTAATCAACTCTATTGG+GGG | + | chr3_3:9784886-9784905 | Msa0441370:intron | 30.0% | |
| TAAAAAATGTGGCCATATCT+AGG | - | chr3_3:9785231-9785250 | None:intergenic | 30.0% | |
| !!! | AGATATGGCCACATTTTTTA+TGG | + | chr3_3:9785231-9785250 | Msa0441370:CDS | 30.0% |
| GTCATTACTTGTATATATGG+CGG | + | chr3_3:9785260-9785279 | Msa0441370:CDS | 30.0% | |
| AGAAAATCAATAAACACAGG+TGG | - | chr3_3:9785412-9785431 | None:intergenic | 30.0% | |
| ! | GTCTAATAAAGCCTTTTATG+CGG | - | chr3_3:9785467-9785486 | None:intergenic | 30.0% |
| !! | TTTCTGAACTGATTTTAGGT+TGG | + | chr3_3:9785806-9785825 | Msa0441370:intron | 30.0% |
| !! | CTAGAGTTTGTTTCATTTTC+AGG | - | chr3_3:9785894-9785913 | None:intergenic | 30.0% |
| AATGAAACAAACTCTAGTAC+AGG | + | chr3_3:9785897-9785916 | Msa0441370:CDS | 30.0% | |
| ATGAAACAAACTCTAGTACA+GGG | + | chr3_3:9785898-9785917 | Msa0441370:CDS | 30.0% | |
| TTGTGTGCAATATGTATAAG+AGG | + | chr3_3:9786124-9786143 | Msa0441370:intron | 30.0% | |
| GAAATGTGTCCCATATATAT+GGG | + | chr3_3:9786213-9786232 | Msa0441370:intron | 30.0% | |
| CAAGTCTTCATTTATTTAGC+TGG | + | chr3_3:9786259-9786278 | Msa0441370:intron | 30.0% | |
| GATTTATTGCAAGATCAGAA+TGG | + | chr3_3:9786292-9786311 | Msa0441370:intron | 30.0% | |
| !!! | AGCATATTTTTTTGCCGATT+TGG | + | chr3_3:9786370-9786389 | Msa0441370:intron | 30.0% |
| TAGATAAGAAAAGGCCAAAT+CGG | - | chr3_3:9786387-9786406 | None:intergenic | 30.0% | |
| ATTGCTATAAAAGAAAGCCT+CGG | + | chr3_3:9786776-9786795 | Msa0441370:intron | 30.0% | |
| ! | ATCTGGGTCAATAATTTTGC+GGG | - | chr3_3:9781198-9781217 | None:intergenic | 35.0% |
| ! | TCTTTCTCTCTCTGTTGATT+CGG | + | chr3_3:9781265-9781284 | Msa0441370:five_prime_UTR | 35.0% |
| GGGTTTCTGCAATTATCAAT+CGG | - | chr3_3:9781295-9781314 | None:intergenic | 35.0% | |
| AAAAATTCAAAGGGTAAGCG+AGG | - | chr3_3:9781455-9781474 | None:intergenic | 35.0% | |
| !!! | CTCTTTGGGGTATGATTTTA+GGG | + | chr3_3:9781526-9781545 | Msa0441370:intron | 35.0% |
| !!! | AGTGCATATGTTTTGATTGG+TGG | + | chr3_3:9781802-9781821 | Msa0441370:intron | 35.0% |
| ATTACACATATTGGGATTGC+CGG | - | chr3_3:9781921-9781940 | None:intergenic | 35.0% | |
| AAAGTTTACACTGACATGCA+TGG | + | chr3_3:9782020-9782039 | Msa0441370:intron | 35.0% | |
| ATCAAACGCTCCATTCTTAT+TGG | - | chr3_3:9782083-9782102 | None:intergenic | 35.0% | |
| ! | TACATGACAAGTTGACAACA+TGG | + | chr3_3:9782139-9782158 | Msa0441370:intron | 35.0% |
| CCCTTTGTCCATCATTAATA+TGG | - | chr3_3:9782403-9782422 | None:intergenic | 35.0% | |
| !! | TATTAATGATGGACAAAGGG+CGG | + | chr3_3:9782403-9782422 | Msa0441370:five_prime_UTR | 35.0% |
| TTGAAGTCAGATGAAAATCC+AGG | + | chr3_3:9782432-9782451 | Msa0441370:five_prime_UTR | 35.0% | |
| GAAGTTTATAGCAATTTCGG+CGG | + | chr3_3:9782505-9782524 | Msa0441370:CDS | 35.0% | |
| !! | TCTACGGTGTTAAGTTTTGT+AGG | + | chr3_3:9782530-9782549 | Msa0441370:CDS | 35.0% |
| CATGACATTGAGTTACCTTT+GGG | + | chr3_3:9782641-9782660 | Msa0441370:CDS | 35.0% | |
| ACAATTCGTCAATAACCCTA+TGG | - | chr3_3:9782678-9782697 | None:intergenic | 35.0% | |
| CCTTGAGACTAAGATTAAGA+AGG | - | chr3_3:9782718-9782737 | None:intergenic | 35.0% | |
| CCTTCTTAATCTTAGTCTCA+AGG | + | chr3_3:9782715-9782734 | Msa0441370:CDS | 35.0% | |
| ATTATGGCATTATGCCCAAT+GGG | + | chr3_3:9782783-9782802 | Msa0441370:intron | 35.0% | |
| ACAAATCAACATGTCCCATT+GGG | - | chr3_3:9782800-9782819 | None:intergenic | 35.0% | |
| GTTTGTATGTTCAGTACTTC+TGG | + | chr3_3:9782824-9782843 | Msa0441370:intron | 35.0% | |
| AGTGTTAAAGTAGAATGGCT+AGG | + | chr3_3:9782920-9782939 | Msa0441370:intron | 35.0% | |
| ! | TAAGTTGGAGTTGTATGTCA+TGG | - | chr3_3:9783120-9783139 | None:intergenic | 35.0% |
| TTATCATATCATGTTGCTGG+TGG | + | chr3_3:9783226-9783245 | Msa0441370:intron | 35.0% | |
| TATCATATCATGTTGCTGGT+GGG | + | chr3_3:9783227-9783246 | Msa0441370:intron | 35.0% | |
| !!! | GTGTCCATGATTTTTTTCCA+TGG | + | chr3_3:9783405-9783424 | Msa0441370:intron | 35.0% |
| TAGGGAAAAACGATATACCA+TGG | - | chr3_3:9783425-9783444 | None:intergenic | 35.0% | |
| TCAGTTTACGAGTTTCAGAA+GGG | - | chr3_3:9783517-9783536 | None:intergenic | 35.0% | |
| ATCAGTTTACGAGTTTCAGA+AGG | - | chr3_3:9783518-9783537 | None:intergenic | 35.0% | |
| ATAGTCTGAATCAGTTTGCA+GGG | - | chr3_3:9783612-9783631 | None:intergenic | 35.0% | |
| AATAGTCTGAATCAGTTTGC+AGG | - | chr3_3:9783613-9783632 | None:intergenic | 35.0% | |
| TATACACGAAGATATGTCCA+GGG | - | chr3_3:9784299-9784318 | None:intergenic | 35.0% | |
| ATATACACGAAGATATGTCC+AGG | - | chr3_3:9784300-9784319 | None:intergenic | 35.0% | |
| !! | TTTTCTTGGTTGATGTTCTC+TGG | + | chr3_3:9784336-9784355 | Msa0441370:CDS | 35.0% |
| CAAGGATTGTATCGAAAAAG+AGG | - | chr3_3:9784382-9784401 | None:intergenic | 35.0% | |
| AAATCTAAGCATGCTCAAAC+GGG | - | chr3_3:9784447-9784466 | None:intergenic | 35.0% | |
| GAAAAGTAACAGGAACATAG+AGG | - | chr3_3:9784597-9784616 | None:intergenic | 35.0% | |
| AAGGCTCAAAGAAAAGTAAC+AGG | - | chr3_3:9784607-9784626 | None:intergenic | 35.0% | |
| ATCTACTCATATCATCATGC+TGG | + | chr3_3:9784683-9784702 | Msa0441370:intron | 35.0% | |
| ! | ATATGAATTGCAGGCCATTT+TGG | + | chr3_3:9784731-9784750 | Msa0441370:intron | 35.0% |
| ! | ACTTTTATCCAAACTACCTG+CGG | - | chr3_3:9784847-9784866 | None:intergenic | 35.0% |
| TTTGGATAAAAGTCTGATCC+TGG | + | chr3_3:9784854-9784873 | Msa0441370:intron | 35.0% | |
| TGATTCTCTTTGCATTACCT+AGG | + | chr3_3:9784940-9784959 | Msa0441370:intron | 35.0% | |
| AGACATGCTATAACTTATCG+AGG | - | chr3_3:9785113-9785132 | None:intergenic | 35.0% | |
| CTGTAGGTTCTTTATTGGAA+TGG | + | chr3_3:9785173-9785192 | Msa0441370:intron | 35.0% | |
| AGGTTCTTTATTGGAATGGA+AGG | + | chr3_3:9785177-9785196 | Msa0441370:intron | 35.0% | |
| GGTTCTTTATTGGAATGGAA+GGG | + | chr3_3:9785178-9785197 | Msa0441370:intron | 35.0% | |
| AATGGAAGGGAATACTTATC+CGG | + | chr3_3:9785191-9785210 | Msa0441370:CDS | 35.0% | |
| ! | CTTGGGATTTTTCCTAGATA+TGG | + | chr3_3:9785216-9785235 | Msa0441370:CDS | 35.0% |
| ACCAAGTGCCATAAAAAATG+TGG | - | chr3_3:9785242-9785261 | None:intergenic | 35.0% | |
| GCAATGATAAACCGCATAAA+AGG | + | chr3_3:9785453-9785472 | Msa0441370:CDS | 35.0% | |
| ATTAGACTAAGGATAGCTCT+AGG | + | chr3_3:9785480-9785499 | Msa0441370:CDS | 35.0% | |
| !!! | ACTGATTTTAGGTTGGATCA+AGG | + | chr3_3:9785813-9785832 | Msa0441370:intron | 35.0% |
| !! | AGTTTGTTTCATTTTCAGGC+CGG | - | chr3_3:9785890-9785909 | None:intergenic | 35.0% |
| TGAAACAAACTCTAGTACAG+GGG | + | chr3_3:9785899-9785918 | Msa0441370:CDS | 35.0% | |
| !!! | TCCTTCTGTCTCTTTTTTTG+TGG | + | chr3_3:9786083-9786102 | Msa0441370:intron | 35.0% |
| TCCACAAAAAAAGAGACAGA+AGG | - | chr3_3:9786087-9786106 | None:intergenic | 35.0% | |
| GGAAATGTGTCCCATATATA+TGG | + | chr3_3:9786212-9786231 | Msa0441370:intron | 35.0% | |
| !! | GATTTGGCCTTTTCTTATCT+AGG | + | chr3_3:9786386-9786405 | Msa0441370:intron | 35.0% |
| TGAGAAGGATTAATAGCCAA+AGG | - | chr3_3:9786588-9786607 | None:intergenic | 35.0% | |
| TTTGGCTATTAATCCTTCTC+AGG | + | chr3_3:9786587-9786606 | Msa0441370:CDS | 35.0% | |
| ! | GTTGTTGGGTTTTTCTCGTT+TGG | + | chr3_3:9781487-9781506 | Msa0441370:intron | 40.0% |
| CCTAAAATCATACCCCAAAG+AGG | - | chr3_3:9781528-9781547 | None:intergenic | 40.0% | |
| !!! | CCTCTTTGGGGTATGATTTT+AGG | + | chr3_3:9781525-9781544 | Msa0441370:intron | 40.0% |
| AATCTCATTGATCGGTAGGT+AGG | + | chr3_3:9781579-9781598 | Msa0441370:intron | 40.0% | |
| !!! | GTTTTGATTGGTGGTGACTT+TGG | + | chr3_3:9781811-9781830 | Msa0441370:intron | 40.0% |
| TGGTGACTTTGGTAGAATCA+CGG | + | chr3_3:9781822-9781841 | Msa0441370:intron | 40.0% | |
| !! | CACAGTAGCACCTTTGATTT+TGG | - | chr3_3:9781883-9781902 | None:intergenic | 40.0% |
| TGTGATTTCGTCAAACTCAC+CGG | + | chr3_3:9781899-9781918 | Msa0441370:intron | 40.0% | |
| ACACTGACGTCCAATAAGAA+TGG | + | chr3_3:9782070-9782089 | Msa0441370:intron | 40.0% | |
| ! | ATGACAAGTTGACAACATGG+TGG | + | chr3_3:9782142-9782161 | Msa0441370:intron | 40.0% |
| GACAACATGGTGGTTCTTAT+TGG | + | chr3_3:9782152-9782171 | Msa0441370:intron | 40.0% | |
| AACATGGTGGTTCTTATTGG+AGG | + | chr3_3:9782155-9782174 | Msa0441370:intron | 40.0% | |
| !! | ATTTCTTTTGGAGACCTGAG+AGG | + | chr3_3:9782307-9782326 | Msa0441370:five_prime_UTR | 40.0% |
| !! | TTTCTTTTGGAGACCTGAGA+GGG | + | chr3_3:9782308-9782327 | Msa0441370:five_prime_UTR | 40.0% |
| ATTTCATAAACTCTGCCCTC+TGG | + | chr3_3:9782360-9782379 | Msa0441370:five_prime_UTR | 40.0% | |
| CAGATGAAAATCCAGGAGAT+TGG | + | chr3_3:9782439-9782458 | Msa0441370:five_prime_UTR | 40.0% | |
| !! | AATCAGATGGACTAATTGGC+TGG | + | chr3_3:9782591-9782610 | Msa0441370:CDS | 40.0% |
| TGGCTGGAATTCAATTCACT+TGG | + | chr3_3:9782607-9782626 | Msa0441370:CDS | 40.0% | |
| CCAAAGGTAACTCAATGTCA+TGG | - | chr3_3:9782643-9782662 | None:intergenic | 40.0% | |
| CCATGACATTGAGTTACCTT+TGG | + | chr3_3:9782640-9782659 | Msa0441370:CDS | 40.0% | |
| ATGGTGGTATACAAACCCAA+AGG | - | chr3_3:9782659-9782678 | None:intergenic | 40.0% | |
| TTGGGTTTGTATACCACCAT+AGG | + | chr3_3:9782659-9782678 | Msa0441370:CDS | 40.0% | |
| TGGGTTTGTATACCACCATA+GGG | + | chr3_3:9782660-9782679 | Msa0441370:CDS | 40.0% | |
| ATTCGTCAATAACCCTATGG+TGG | - | chr3_3:9782675-9782694 | None:intergenic | 40.0% | |
| GTCTCAAGGTGAGTTTGTAA+TGG | + | chr3_3:9782729-9782748 | Msa0441370:intron | 40.0% | |
| GATTATGGCATTATGCCCAA+TGG | + | chr3_3:9782782-9782801 | Msa0441370:intron | 40.0% | |
| CACAAATCAACATGTCCCAT+TGG | - | chr3_3:9782801-9782820 | None:intergenic | 40.0% | |
| !! | CAATGGGACATGTTGATTTG+TGG | + | chr3_3:9782799-9782818 | Msa0441370:intron | 40.0% |
| ! | CTTTGTTTCGTCAAGCTTAC+CGG | + | chr3_3:9783089-9783108 | Msa0441370:intron | 40.0% |
| GTTGTATGTCATGGACAAAC+CGG | - | chr3_3:9783111-9783130 | None:intergenic | 40.0% | |
| ! | GAGAGGGGTGTAAAGTATTA+TGG | - | chr3_3:9783348-9783367 | None:intergenic | 40.0% |
| ATAGTCTGCATGCGATAAGA+AGG | - | chr3_3:9783476-9783495 | None:intergenic | 40.0% | |
| TTGATTGCAAGACACTCCAT+TGG | + | chr3_3:9783701-9783720 | Msa0441370:intron | 40.0% | |
| AAGCTAGTTAACATGGTTGC+AGG | + | chr3_3:9783796-9783815 | Msa0441370:intron | 40.0% | |
| AGACCTGCTTGATAAAGTGT+TGG | - | chr3_3:9784071-9784090 | None:intergenic | 40.0% | |
| CACTTTATCAAGCAGGTCTT+TGG | + | chr3_3:9784072-9784091 | Msa0441370:CDS | 40.0% | |
| GGCCGTACTTTGTTCTTTAA+AGG | + | chr3_3:9784106-9784125 | Msa0441370:CDS | 40.0% | |
| TGCATAGATGTTTCAAGCTC+TGG | + | chr3_3:9784229-9784248 | Msa0441370:intron | 40.0% | |
| GTCTCGAAAGCAATACTCAA+AGG | - | chr3_3:9784626-9784645 | None:intergenic | 40.0% | |
| CATGGTGTGATATGAATTGC+AGG | + | chr3_3:9784722-9784741 | Msa0441370:intron | 40.0% | |
| CTGAAATCCATGCACCAAAA+TGG | - | chr3_3:9784748-9784767 | None:intergenic | 40.0% | |
| TACATTAACCGCAGGTAGTT+TGG | + | chr3_3:9784836-9784855 | Msa0441370:intron | 40.0% | |
| GTTGCTGCAGACAACATATT+TGG | + | chr3_3:9785038-9785057 | Msa0441370:intron | 40.0% | |
| GGAATACTTATCCGGAACTT+GGG | + | chr3_3:9785199-9785218 | Msa0441370:CDS | 40.0% | |
| CTAGGAAAAATCCCAAGTTC+CGG | - | chr3_3:9785213-9785232 | None:intergenic | 40.0% | |
| !!! | GCCACATTTTTTATGGCACT+TGG | + | chr3_3:9785238-9785257 | Msa0441370:CDS | 40.0% |
| TTGTATATATGGCGGCTTCA+TGG | + | chr3_3:9785268-9785287 | Msa0441370:CDS | 40.0% | |
| ATAGCACTGCATCTACAAGA+TGG | - | chr3_3:9785303-9785322 | None:intergenic | 40.0% | |
| ! | ATATCCTCTTAGCTCTTCAG+TGG | - | chr3_3:9785535-9785554 | None:intergenic | 40.0% |
| TTGCTTATGACAGGAACCTA+TGG | + | chr3_3:9785656-9785675 | Msa0441370:intron | 40.0% | |
| !!! | AGCTTTTTAGCCTTAGCCAT+AGG | - | chr3_3:9785675-9785694 | None:intergenic | 40.0% |
| GACAAGTATACATCTCAGTC+AGG | - | chr3_3:9785839-9785858 | None:intergenic | 40.0% | |
| GGATTTGGAAACAATCCTGT+AGG | - | chr3_3:9786002-9786021 | None:intergenic | 40.0% | |
| ! | GTGTGAAGATTTTACCTCCA+AGG | - | chr3_3:9786050-9786069 | None:intergenic | 40.0% |
| TTGCATTCTTGGCCAAATCA+GGG | + | chr3_3:9786433-9786452 | Msa0441370:CDS | 40.0% | |
| ACTGTTCTGATAGCAGTAGA+TGG | - | chr3_3:9786475-9786494 | None:intergenic | 40.0% | |
| TCTACTGCTATCAGAACAGT+AGG | + | chr3_3:9786475-9786494 | Msa0441370:CDS | 40.0% | |
| ATGAGACATCTTGCATCTGT+CGG | + | chr3_3:9786520-9786539 | Msa0441370:CDS | 40.0% | |
| ATCAAAGGTTGTCTGAGCAT+AGG | - | chr3_3:9786551-9786570 | None:intergenic | 40.0% | |
| !! | CAACCTTTGATGATGCTTCT+TGG | + | chr3_3:9786560-9786579 | Msa0441370:CDS | 40.0% |
| !! | GTTCCAAGAAGCATCATCAA+AGG | - | chr3_3:9786566-9786585 | None:intergenic | 40.0% |
| ATGATGCTTCTTGGAACCTT+TGG | + | chr3_3:9786569-9786588 | Msa0441370:CDS | 40.0% | |
| TCTAGAAAGAGGGTGAGGTA+AGG | - | chr3_3:9781325-9781344 | None:intergenic | 45.0% | |
| CCTGAGTCGATCTAGAAAGA+GGG | - | chr3_3:9781335-9781354 | None:intergenic | 45.0% | |
| ACCTGAGTCGATCTAGAAAG+AGG | - | chr3_3:9781336-9781355 | None:intergenic | 45.0% | |
| GTAAACTTTGAGCCCAGAGA+AGG | - | chr3_3:9782009-9782028 | None:intergenic | 45.0% | |
| CAACATCCAATGGAACCAGA+GGG | - | chr3_3:9782378-9782397 | None:intergenic | 45.0% | |
| TCAACATCCAATGGAACCAG+AGG | - | chr3_3:9782379-9782398 | None:intergenic | 45.0% | |
| TAGTGCTAACACCAATCTCC+TGG | - | chr3_3:9782453-9782472 | None:intergenic | 45.0% | |
| !! | GATTGGTGTTAGCACTAGAG+AGG | + | chr3_3:9782456-9782475 | Msa0441370:five_prime_UTR | 45.0% |
| AGCAATTTCGGCGGTTTCTA+CGG | + | chr3_3:9782514-9782533 | Msa0441370:CDS | 45.0% | |
| !! | TGGGACATGTTGATTTGTGG+TGG | + | chr3_3:9782802-9782821 | Msa0441370:intron | 45.0% |
| AGTACTTCTGGTAGACTACG+TGG | + | chr3_3:9782836-9782855 | Msa0441370:intron | 45.0% | |
| AGCACGAGAAACTCTGCAAA+TGG | - | chr3_3:9782871-9782890 | None:intergenic | 45.0% | |
| !! | GAGCGCTTTGGTTGATAAGT+TGG | - | chr3_3:9783135-9783154 | None:intergenic | 45.0% |
| TGTTGTGAAGACACCAGAAC+TGG | - | chr3_3:9783162-9783181 | None:intergenic | 45.0% | |
| AAAAAGGGATGCCACACCAA+TGG | - | chr3_3:9783720-9783739 | None:intergenic | 45.0% | |
| !! | TTATGTCATGGTGGATGGAC+AGG | + | chr3_3:9784019-9784038 | Msa0441370:intron | 45.0% |
| !! | TATGTCATGGTGGATGGACA+GGG | + | chr3_3:9784020-9784039 | Msa0441370:intron | 45.0% |
| !! | CCTGCTTGATAAAGTGTTGG+TGG | - | chr3_3:9784068-9784087 | None:intergenic | 45.0% |
| CCACCAACACTTTATCAAGC+AGG | + | chr3_3:9784065-9784084 | Msa0441370:CDS | 45.0% | |
| AAGCAGGTCTTTGGTCAACT+TGG | + | chr3_3:9784081-9784100 | Msa0441370:CDS | 45.0% | |
| AGGTCTTTGGTCAACTTGGT+TGG | + | chr3_3:9784085-9784104 | Msa0441370:CDS | 45.0% | |
| ATAAATGACAGCTAGGGCTG+TGG | + | chr3_3:9784408-9784427 | Msa0441370:intron | 45.0% | |
| TATTGCTTTCGAGACACTGC+AGG | + | chr3_3:9784631-9784650 | Msa0441370:CDS | 45.0% | |
| ! | ATTCATCATTCGGCTTGCAG+TGG | + | chr3_3:9784783-9784802 | Msa0441370:CDS | 45.0% |
| CTGCTTGATACATTAACCGC+AGG | + | chr3_3:9784828-9784847 | Msa0441370:CDS | 45.0% | |
| ATACAACACATGCTCTGCCT+AGG | - | chr3_3:9784960-9784979 | None:intergenic | 45.0% | |
| GGGAATACTTATCCGGAACT+TGG | + | chr3_3:9785198-9785217 | Msa0441370:CDS | 45.0% | |
| GTTTGCCAAACCTGTCTTTC+TGG | + | chr3_3:9785587-9785606 | Msa0441370:intron | 45.0% | |
| ATCGACCAGAAAGACAGGTT+TGG | - | chr3_3:9785595-9785614 | None:intergenic | 45.0% | |
| ATGACAGGAACCTATGGCTA+AGG | + | chr3_3:9785662-9785681 | Msa0441370:intron | 45.0% | |
| TCAAACACGCAAGATGGAAG+AGG | - | chr3_3:9785710-9785729 | None:intergenic | 45.0% | |
| ACGATCTCAAACACGCAAGA+TGG | - | chr3_3:9785716-9785735 | None:intergenic | 45.0% | |
| ! | ATCTTGCGTGTTTGAGATCG+TGG | + | chr3_3:9785715-9785734 | Msa0441370:CDS | 45.0% |
| AAAAGTGGCTTTCGGCATGT+TGG | - | chr3_3:9785861-9785880 | None:intergenic | 45.0% | |
| !! | CGAGTTTTGACGATCGAATC+CGG | - | chr3_3:9785964-9785983 | None:intergenic | 45.0% |
| CGGATTCGATCGTCAAAACT+CGG | + | chr3_3:9785962-9785981 | Msa0441370:CDS | 45.0% | |
| GCTAGACATAACATGCCTAC+AGG | + | chr3_3:9785984-9786003 | Msa0441370:CDS | 45.0% | |
| !! | GCATTGTTGAGTGTCGGATT+TGG | - | chr3_3:9786017-9786036 | None:intergenic | 45.0% |
| TTACCTCCAAGGAACACCTT+CGG | - | chr3_3:9786039-9786058 | None:intergenic | 45.0% | |
| AGACAGAAGGACATGTAGCA+TGG | - | chr3_3:9786074-9786093 | None:intergenic | 45.0% | |
| CTGCGCTCCTAGATAAGAAA+AGG | - | chr3_3:9786396-9786415 | None:intergenic | 45.0% | |
| !! | CTTTTCTTATCTAGGAGCGC+AGG | + | chr3_3:9786394-9786413 | Msa0441370:intron | 45.0% |
| !! | ACTCAGGTTGGTTGCATTCT+TGG | + | chr3_3:9786422-9786441 | Msa0441370:CDS | 45.0% |
| GTTGCATTCTTGGCCAAATC+AGG | + | chr3_3:9786432-9786451 | Msa0441370:CDS | 45.0% | |
| GCTATCAGAACAGTAGGTCT+CGG | + | chr3_3:9786481-9786500 | Msa0441370:CDS | 45.0% | |
| CTATCAGAACAGTAGGTCTC+GGG | + | chr3_3:9786482-9786501 | Msa0441370:CDS | 45.0% | |
| !!! | TATTAATTATTTTTTTTAAC+TGG | + | chr3_3:9786839-9786858 | Msa0441370:intron | 5.0% |
| !!! | ATTAATTATTTTTTTTAACT+GGG | + | chr3_3:9786840-9786859 | Msa0441370:intron | 5.0% |
| GTCGATCTAGAAAGAGGGTG+AGG | - | chr3_3:9781330-9781349 | None:intergenic | 50.0% | |
| ! | CCCTCTTTCTAGATCGACTC+AGG | + | chr3_3:9781332-9781351 | Msa0441370:five_prime_UTR | 50.0% |
| AGGTATGCGATGACCTTCTC+TGG | + | chr3_3:9781993-9782012 | Msa0441370:intron | 50.0% | |
| GGTATGCGATGACCTTCTCT+GGG | + | chr3_3:9781994-9782013 | Msa0441370:intron | 50.0% | |
| AGAACTGGCTATGAGCGCTT+TGG | - | chr3_3:9783147-9783166 | None:intergenic | 50.0% | |
| ! | AAAGCGCTCATAGCCAGTTC+TGG | + | chr3_3:9783146-9783165 | Msa0441370:intron | 50.0% |
| AAGGCTGTCACTCATGTCCT+AGG | - | chr3_3:9783201-9783220 | None:intergenic | 50.0% | |
| TGCAAGACACTCCATTGGTG+TGG | + | chr3_3:9783706-9783725 | Msa0441370:intron | 50.0% | |
| !! | ATGTCATGGTGGATGGACAG+GGG | + | chr3_3:9784021-9784040 | Msa0441370:intron | 50.0% |
| !! | AGTGTTGGTGGCACAATCAG+TGG | - | chr3_3:9784056-9784075 | None:intergenic | 50.0% |
| ! | AGCTCTGGCTAGAGATCGAT+TGG | + | chr3_3:9784244-9784263 | Msa0441370:CDS | 50.0% |
| TGGCTAGAGATCGATTGGAG+CGG | + | chr3_3:9784249-9784268 | Msa0441370:CDS | 50.0% | |
| ACGAAGATATGTCCAGGGTG+TGG | - | chr3_3:9784294-9784313 | None:intergenic | 50.0% | |
| !! | TTGCAGGCCATTTTGGTGCA+TGG | + | chr3_3:9784738-9784757 | Msa0441370:intron | 50.0% |
| TATATGGCGGCTTCATGGCA+TGG | + | chr3_3:9785273-9785292 | Msa0441370:CDS | 50.0% | |
| AGCTCTTCAGTGGTTGCATC+AGG | - | chr3_3:9785525-9785544 | None:intergenic | 50.0% | |
| GCAACCACTGAAGAGCTAAG+AGG | + | chr3_3:9785528-9785547 | Msa0441370:CDS | 50.0% | |
| CCAAGATCGACCAGAAAGAC+AGG | - | chr3_3:9785600-9785619 | None:intergenic | 50.0% | |
| ! | CCTGTCTTTCTGGTCGATCT+TGG | + | chr3_3:9785597-9785616 | Msa0441370:intron | 50.0% |
| !! | TGGTCGATCTTGGTGTCAGT+TGG | + | chr3_3:9785607-9785626 | Msa0441370:intron | 50.0% |
| !! | GGTCGATCTTGGTGTCAGTT+GGG | + | chr3_3:9785608-9785627 | Msa0441370:intron | 50.0% |
| ! | GCGTGTTTGAGATCGTGGTA+TGG | + | chr3_3:9785720-9785739 | Msa0441370:intron | 50.0% |
| !!! | TGCCGAAAGCCACTTTTTGC+AGG | + | chr3_3:9785864-9785883 | Msa0441370:CDS | 50.0% |
| GGCCTGCAAAAAGTGGCTTT+CGG | - | chr3_3:9785869-9785888 | None:intergenic | 50.0% | |
| !!! | GAAAGCCACTTTTTGCAGGC+CGG | + | chr3_3:9785868-9785887 | Msa0441370:CDS | 50.0% |
| GATCGAATCCGGCACTCATT+TGG | - | chr3_3:9785953-9785972 | None:intergenic | 50.0% | |
| CCTTCGGCATTGTTGAGTGT+CGG | - | chr3_3:9786023-9786042 | None:intergenic | 50.0% | |
| !! | ACAATGCCGAAGGTGTTCCT+TGG | + | chr3_3:9786030-9786049 | Msa0441370:CDS | 50.0% |
| !! | TGGCCAAATCAGGGTGTTGA+TGG | + | chr3_3:9786442-9786461 | Msa0441370:CDS | 50.0% |
| GCTCCATCAACACCCTGATT+TGG | - | chr3_3:9786448-9786467 | None:intergenic | 50.0% | |
| !! | AATCAGGGTGTTGATGGAGC+TGG | + | chr3_3:9786448-9786467 | Msa0441370:CDS | 50.0% |
| TCTTACACCAGTGGAAGGAG+CGG | - | chr3_3:9786638-9786657 | None:intergenic | 50.0% | |
| !! | AGGGTGAGGTAAGGAGCGTT+GGG | - | chr3_3:9781316-9781335 | None:intergenic | 55.0% |
| CATCACTCAGCTACCCTCTC+AGG | - | chr3_3:9782324-9782343 | None:intergenic | 55.0% | |
| CTGAGAGGGTAGCTGAGTGA+TGG | + | chr3_3:9782322-9782341 | Msa0441370:five_prime_UTR | 55.0% | |
| AGAGGGTAGCTGAGTGATGG+TGG | + | chr3_3:9782325-9782344 | Msa0441370:five_prime_UTR | 55.0% | |
| ! | ACTCTGCCCTCTGGTTCCAT+TGG | + | chr3_3:9782369-9782388 | Msa0441370:five_prime_UTR | 55.0% |
| TATGTCCAGGGTGTGGCAGA+TGG | - | chr3_3:9784287-9784306 | None:intergenic | 55.0% | |
| CTTGCACGCCAAATGAGTGC+CGG | + | chr3_3:9785942-9785961 | Msa0441370:CDS | 55.0% | |
| CCGACACTCAACAATGCCGA+AGG | + | chr3_3:9786020-9786039 | Msa0441370:CDS | 55.0% | |
| !! | ATGCCGAAGGTGTTCCTTGG+AGG | + | chr3_3:9786033-9786052 | Msa0441370:CDS | 55.0% |
| ! | CTTATCTAGGAGCGCAGGAC+TGG | + | chr3_3:9786399-9786418 | Msa0441370:intron | 55.0% |
| GGCAGTCTTACACCAGTGGA+AGG | - | chr3_3:9786643-9786662 | None:intergenic | 55.0% | |
| TCCACTGGTGTAAGACTGCC+AGG | + | chr3_3:9786643-9786662 | Msa0441370:intron | 55.0% | |
| TCCTGGCAGTCTTACACCAG+TGG | - | chr3_3:9786647-9786666 | None:intergenic | 55.0% | |
| ACTGGTGTAAGACTGCCAGG+AGG | + | chr3_3:9786646-9786665 | Msa0441370:intron | 55.0% | |
| !! | GGGTGAGGTAAGGAGCGTTG+GGG | - | chr3_3:9781315-9781334 | None:intergenic | 60.0% |
| ! | GAGGGTGAGGTAAGGAGCGT+TGG | - | chr3_3:9781317-9781336 | None:intergenic | 60.0% |
| CATCTCCATCTGCCACACCC+TGG | + | chr3_3:9784279-9784298 | Msa0441370:CDS | 60.0% | |
| TCAGGCCGGCCTGCAAAAAG+TGG | - | chr3_3:9785876-9785895 | None:intergenic | 60.0% | |
| ATCCTTCTCAGGCTTCCGCG+TGG | + | chr3_3:9786598-9786617 | Msa0441370:CDS | 60.0% | |
| !! | AAGAAAGCCTCGGCGCTGAC+TGG | + | chr3_3:9786786-9786805 | Msa0441370:intron | 60.0% |
| ! | AGGAGCGCAGGACTGGACTC+AGG | + | chr3_3:9786406-9786425 | Msa0441370:intron | 65.0% |
| GCGCAGGACTGGACTCAGGT+TGG | + | chr3_3:9786410-9786429 | Msa0441370:CDS | 65.0% | |
| GACCACGCGGAAGCCTGAGA+AGG | - | chr3_3:9786603-9786622 | None:intergenic | 65.0% | |
| GCTTCCGCGTGGTCCAAGTC+AGG | + | chr3_3:9786609-9786628 | Msa0441370:CDS | 65.0% | |
| !! | GTCGCCTGACTTGGACCACG+CGG | - | chr3_3:9786616-9786635 | None:intergenic | 65.0% |
| GAAGGAGCGGTCGCCTGACT+TGG | - | chr3_3:9786625-9786644 | None:intergenic | 65.0% | |
| CAGGCGACCGCTCCTTCCAC+TGG | + | chr3_3:9786628-9786647 | Msa0441370:CDS | 70.0% | |
| !! | AGCCTCGGCGCTGACTGGAC+TGG | + | chr3_3:9786791-9786810 | Msa0441370:intron | 70.0% |
| CACCAGTCCAGTCAGCGCCG+AGG | - | chr3_3:9786796-9786815 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 9781180 | 9786913 | 9781180 | ID=Msa0441370;Name=Msa0441370 |
| chr3_3 | mRNA | 9781180 | 9786913 | 9781180 | ID=Msa0441370-mRNA-1;Parent=Msa0441370;Name=Msa0441370-mRNA-1;_AED=0.14;_eAED=0.14;_QI=372|0.66|0.61|0.92|0.91|0.84|13|0|529 |
| chr3_3 | exon | 9781180 | 9781353 | 9781180 | ID=Msa0441370-mRNA-1:exon:2000;Parent=Msa0441370-mRNA-1 |
| chr3_3 | exon | 9782299 | 9782736 | 9782299 | ID=Msa0441370-mRNA-1:exon:2001;Parent=Msa0441370-mRNA-1 |
| chr3_3 | exon | 9783491 | 9783568 | 9783491 | ID=Msa0441370-mRNA-1:exon:2002;Parent=Msa0441370-mRNA-1 |
| chr3_3 | exon | 9784041 | 9784127 | 9784041 | ID=Msa0441370-mRNA-1:exon:2003;Parent=Msa0441370-mRNA-1 |
| chr3_3 | exon | 9784236 | 9784357 | 9784236 | ID=Msa0441370-mRNA-1:exon:2004;Parent=Msa0441370-mRNA-1 |
| chr3_3 | exon | 9784556 | 9784652 | 9784556 | ID=Msa0441370-mRNA-1:exon:2005;Parent=Msa0441370-mRNA-1 |
| chr3_3 | exon | 9784744 | 9784849 | 9784744 | ID=Msa0441370-mRNA-1:exon:2006;Parent=Msa0441370-mRNA-1 |
| chr3_3 | exon | 9785179 | 9785336 | 9785179 | ID=Msa0441370-mRNA-1:exon:2007;Parent=Msa0441370-mRNA-1 |
| chr3_3 | exon | 9785441 | 9785578 | 9785441 | ID=Msa0441370-mRNA-1:exon:2008;Parent=Msa0441370-mRNA-1 |
| chr3_3 | exon | 9785669 | 9785736 | 9785669 | ID=Msa0441370-mRNA-1:exon:2009;Parent=Msa0441370-mRNA-1 |
| chr3_3 | exon | 9785824 | 9786054 | 9785824 | ID=Msa0441370-mRNA-1:exon:2010;Parent=Msa0441370-mRNA-1 |
| chr3_3 | exon | 9786408 | 9786651 | 9786408 | ID=Msa0441370-mRNA-1:exon:2011;Parent=Msa0441370-mRNA-1 |
| chr3_3 | exon | 9786893 | 9786913 | 9786893 | ID=Msa0441370-mRNA-1:exon:2012;Parent=Msa0441370-mRNA-1 |
| chr3_3 | five_prime_UTR | 9781180 | 9781353 | 9781180 | ID=Msa0441370-mRNA-1:five_prime_utr;Parent=Msa0441370-mRNA-1 |
| chr3_3 | five_prime_UTR | 9782299 | 9782496 | 9782299 | ID=Msa0441370-mRNA-1:five_prime_utr;Parent=Msa0441370-mRNA-1 |
| chr3_3 | CDS | 9782497 | 9782736 | 9782497 | ID=Msa0441370-mRNA-1:cds;Parent=Msa0441370-mRNA-1 |
| chr3_3 | CDS | 9783491 | 9783568 | 9783491 | ID=Msa0441370-mRNA-1:cds;Parent=Msa0441370-mRNA-1 |
| chr3_3 | CDS | 9784041 | 9784127 | 9784041 | ID=Msa0441370-mRNA-1:cds;Parent=Msa0441370-mRNA-1 |
| chr3_3 | CDS | 9784236 | 9784357 | 9784236 | ID=Msa0441370-mRNA-1:cds;Parent=Msa0441370-mRNA-1 |
| chr3_3 | CDS | 9784556 | 9784652 | 9784556 | ID=Msa0441370-mRNA-1:cds;Parent=Msa0441370-mRNA-1 |
| chr3_3 | CDS | 9784744 | 9784849 | 9784744 | ID=Msa0441370-mRNA-1:cds;Parent=Msa0441370-mRNA-1 |
| chr3_3 | CDS | 9785179 | 9785336 | 9785179 | ID=Msa0441370-mRNA-1:cds;Parent=Msa0441370-mRNA-1 |
| chr3_3 | CDS | 9785441 | 9785578 | 9785441 | ID=Msa0441370-mRNA-1:cds;Parent=Msa0441370-mRNA-1 |
| chr3_3 | CDS | 9785669 | 9785736 | 9785669 | ID=Msa0441370-mRNA-1:cds;Parent=Msa0441370-mRNA-1 |
| chr3_3 | CDS | 9785824 | 9786054 | 9785824 | ID=Msa0441370-mRNA-1:cds;Parent=Msa0441370-mRNA-1 |
| chr3_3 | CDS | 9786408 | 9786651 | 9786408 | ID=Msa0441370-mRNA-1:cds;Parent=Msa0441370-mRNA-1 |
| chr3_3 | CDS | 9786893 | 9786913 | 9786893 | ID=Msa0441370-mRNA-1:cds;Parent=Msa0441370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
