Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442450 | XP_003598367.2 | 96.789 | 436 | 14 | 0 | 1 | 436 | 1 | 436 | 0.0 | 868 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442450 | sp|Q3EAQ5|PTR36_ARATH | 58.145 | 442 | 172 | 4 | 1 | 436 | 1 | 435 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442450 | G7IVI0 | 96.789 | 436 | 14 | 0 | 1 | 436 | 1 | 436 | 0.0 | 868 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0394750 | Msa0442450 | 0.866291 | 3.173506e-65 | -8.615850e-47 |
| Msa0442450 | Msa0489920 | 0.805576 | 1.248992e-49 | -8.615850e-47 |
| Msa0348070 | Msa0442450 | 0.818059 | 2.388191e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442450 | MtrunA17_Chr3g0080421 | 96.789 | 436 | 14 | 0 | 1 | 436 | 1 | 436 | 0.0 | 868 |
| Msa0442450 | MtrunA17_Chr8g0364441 | 77.895 | 475 | 28 | 3 | 1 | 436 | 1 | 437 | 0.0 | 719 |
| Msa0442450 | MtrunA17_Chr8g0354841 | 71.194 | 427 | 119 | 1 | 10 | 436 | 7 | 429 | 0.0 | 654 |
| Msa0442450 | MtrunA17_Chr8g0354831 | 70.023 | 437 | 129 | 2 | 1 | 436 | 1 | 436 | 0.0 | 654 |
| Msa0442450 | MtrunA17_Chr8g0354851 | 70.023 | 427 | 124 | 1 | 10 | 436 | 7 | 429 | 0.0 | 640 |
| Msa0442450 | MtrunA17_Chr8g0354891 | 68.650 | 437 | 132 | 2 | 1 | 436 | 1 | 433 | 0.0 | 625 |
| Msa0442450 | MtrunA17_Chr3g0080431 | 70.709 | 437 | 121 | 4 | 1 | 436 | 1 | 431 | 0.0 | 603 |
| Msa0442450 | MtrunA17_Chr8g0354861 | 69.896 | 289 | 83 | 1 | 148 | 436 | 4 | 288 | 1.26e-149 | 427 |
| Msa0442450 | MtrunA17_Chr3g0123421 | 72.115 | 208 | 58 | 0 | 1 | 208 | 1 | 208 | 9.90e-105 | 309 |
| Msa0442450 | MtrunA17_Chr3g0123441 | 76.042 | 96 | 23 | 0 | 341 | 436 | 1 | 96 | 2.40e-41 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442450 | AT3G43790.1 | 58.145 | 442 | 172 | 4 | 1 | 436 | 1 | 435 | 0.0 | 519 |
| Msa0442450 | AT3G43790.4 | 58.145 | 442 | 172 | 4 | 1 | 436 | 1 | 435 | 0.0 | 519 |
| Msa0442450 | AT3G43790.2 | 58.145 | 442 | 172 | 4 | 1 | 436 | 1 | 435 | 0.0 | 518 |
| Msa0442450 | AT3G43790.3 | 58.145 | 442 | 172 | 4 | 1 | 436 | 1 | 435 | 0.0 | 518 |
| Msa0442450 | AT5G13750.1 | 56.492 | 439 | 172 | 3 | 7 | 436 | 6 | 434 | 0.0 | 516 |
| Msa0442450 | AT5G13740.2 | 58.391 | 435 | 172 | 4 | 8 | 434 | 7 | 440 | 5.29e-180 | 509 |
| Msa0442450 | AT5G13740.1 | 58.391 | 435 | 172 | 4 | 8 | 434 | 7 | 440 | 4.35e-179 | 509 |
| Msa0442450 | AT5G13750.3 | 54.808 | 416 | 169 | 3 | 7 | 413 | 6 | 411 | 1.55e-166 | 474 |
| Msa0442450 | AT5G13750.4 | 54.808 | 416 | 169 | 3 | 7 | 413 | 6 | 411 | 1.55e-166 | 474 |
| Msa0442450 | AT3G43790.5 | 57.282 | 412 | 163 | 4 | 1 | 406 | 1 | 405 | 3.18e-166 | 473 |
| Msa0442450 | AT5G13750.2 | 56.145 | 358 | 138 | 3 | 88 | 436 | 1 | 348 | 3.79e-141 | 409 |
| Msa0442450 | AT5G13940.2 | 45.946 | 74 | 24 | 1 | 275 | 348 | 11 | 68 | 3.16e-13 | 72.0 |
| Msa0442450 | AT5G13940.1 | 45.946 | 74 | 24 | 1 | 275 | 348 | 162 | 219 | 3.74e-13 | 72.0 |
Find 100 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCATAGCAATGCTTTC+TGG | 0.080739 | 3_3:-11967493 | Msa0442450:CDS |
| CTTAATAGATCTTCTCATTA+TGG | 0.133209 | 3_3:-11968087 | Msa0442450:intron |
| ACCAGCTTTGGGAGGTTATT+TGG | 0.181938 | 3_3:-11969521 | Msa0442450:CDS |
| TGGGGCATGGGTTTAATAAT+TGG | 0.228616 | 3_3:-11969544 | Msa0442450:CDS |
| TTCGAAATCTCTTGAACATT+TGG | 0.267325 | 3_3:-11971137 | Msa0442450:CDS |
| GAATCCTTTGGAAATAGATT+TGG | 0.269266 | 3_3:+11969197 | None:intergenic |
| TTTAATAATTGGACCAGCTT+TGG | 0.269939 | 3_3:-11969533 | Msa0442450:CDS |
| TTAATAGATCTTCTCATTAT+GGG | 0.296541 | 3_3:-11968086 | Msa0442450:intron |
| CACAACAATAGATGACATTA+AGG | 0.296857 | 3_3:+11968450 | None:intergenic |
| CTTTCCTTACCTATATTTCA+TGG | 0.298872 | 3_3:-11970869 | Msa0442450:intron |
| CGGTAGTAATTGCCTGCATC+TGG | 0.308405 | 3_3:-11969001 | Msa0442450:CDS |
| AAAATGGAAGATGGAAATAT+TGG | 0.310584 | 3_3:-11971246 | Msa0442450:CDS |
| AAGAAATAAACCAGTGATTA+TGG | 0.311778 | 3_3:+11967140 | None:intergenic |
| GAAATGGAAGGCAAGAAATA+TGG | 0.321659 | 3_3:+11969044 | None:intergenic |
| TTCAAACCACCCAACCTTCT+AGG | 0.329729 | 3_3:+11968055 | None:intergenic |
| TATTTCCAAAGGATTCCTTT+TGG | 0.332250 | 3_3:-11969190 | Msa0442450:CDS |
| AATCCTTTGGAAATAGATTT+GGG | 0.340594 | 3_3:+11969198 | None:intergenic |
| GCTTTAGAAACTGGAAGAAA+TGG | 0.345551 | 3_3:-11968529 | Msa0442450:CDS |
| GTAAGATTTGCTCGCATCTC+CGG | 0.354320 | 3_3:-11967639 | Msa0442450:CDS |
| TTCAGTGCAGCTTGGGGCAT+GGG | 0.362285 | 3_3:-11969556 | Msa0442450:CDS |
| CGAGAAGAAAAGCAAGCTCT+TGG | 0.364652 | 3_3:-11969890 | Msa0442450:CDS |
| GAGATGCGAGCAAATCTTAC+AGG | 0.370847 | 3_3:+11967642 | None:intergenic |
| GGTGATGTTCTTGCAATATC+AGG | 0.378966 | 3_3:-11968013 | Msa0442450:intron |
| TTAATAATTGGACCAGCTTT+GGG | 0.379847 | 3_3:-11969532 | Msa0442450:CDS |
| ATGAAAACCTCTTCCTAAAC+TGG | 0.393957 | 3_3:-11968474 | Msa0442450:CDS |
| ATTTCAGTTCAGTGCAGCTT+GGG | 0.399921 | 3_3:-11969563 | Msa0442450:intron |
| AATTGCCTGCATCTGGCTTC+CGG | 0.400402 | 3_3:-11968994 | Msa0442450:intron |
| TTGTCCCAAAAGGAATCCTT+TGG | 0.400863 | 3_3:+11969185 | None:intergenic |
| TTAAACTTACCATGAAATAT+AGG | 0.404028 | 3_3:+11970860 | None:intergenic |
| GATGCTGAAGCTTTAGAAAC+TGG | 0.405641 | 3_3:-11968538 | Msa0442450:CDS |
| ATGACATTAAGGGCCAGTTT+AGG | 0.411844 | 3_3:+11968461 | None:intergenic |
| TAAGATTTGCTCGCATCTCC+GGG | 0.414274 | 3_3:-11967638 | Msa0442450:CDS |
| GTGTTGATTGGTACCTTCAT+TGG | 0.414762 | 3_3:+11970041 | None:intergenic |
| TTCAAAACAATTGGTCCAGC+TGG | 0.422073 | 3_3:-11966946 | Msa0442450:CDS |
| TGCAAAAGCTGATATTGAAA+TGG | 0.424887 | 3_3:+11969028 | None:intergenic |
| ATAATCCCTAAAATTGCAAC+AGG | 0.426557 | 3_3:+11970459 | None:intergenic |
| GGATGTTTAAATGGTTTGCT+TGG | 0.432632 | 3_3:-11970065 | Msa0442450:CDS |
| GTTCAGTGCAGCTTGGGGCA+TGG | 0.433976 | 3_3:-11969557 | Msa0442450:CDS |
| TAAGGAAAGAGAGATGATAT+AGG | 0.434892 | 3_3:+11970883 | None:intergenic |
| TTTGGGAGGTTATTTGGCTC+AGG | 0.435359 | 3_3:-11969515 | Msa0442450:intron |
| TCCAGAAAGCATTGCTATGA+AGG | 0.448179 | 3_3:+11967492 | None:intergenic |
| GATCTTTGACATCAATATCA+TGG | 0.448413 | 3_3:-11970512 | Msa0442450:CDS |
| TAAAGCTTCAGCATCATCAA+TGG | 0.462778 | 3_3:+11968546 | None:intergenic |
| ATGTCAATATTCAAAACAAT+TGG | 0.466702 | 3_3:-11966955 | Msa0442450:CDS |
| GCCAAATAACCTCCCAAAGC+TGG | 0.467939 | 3_3:+11969520 | None:intergenic |
| CACACTGCACCACCTCCAGC+TGG | 0.476747 | 3_3:+11966931 | None:intergenic |
| TATGGGCGGTGAGTCCTAGA+AGG | 0.478577 | 3_3:-11968069 | Msa0442450:CDS |
| ATCTTTGACATCAATATCAT+GGG | 0.481621 | 3_3:-11970511 | Msa0442450:CDS |
| GGCGGTGAGTCCTAGAAGGT+TGG | 0.481959 | 3_3:-11968065 | Msa0442450:CDS |
| CGTCAAAGAGGAGCAGCTAA+TGG | 0.482536 | 3_3:-11966994 | Msa0442450:CDS |
| GATTTCAGTTCAGTGCAGCT+TGG | 0.482930 | 3_3:-11969564 | Msa0442450:intron |
| AAGGGGTAACTTTGCAAAAG+AGG | 0.484476 | 3_3:+11967511 | None:intergenic |
| TGGTTTGCTTGGACCAATGA+AGG | 0.487662 | 3_3:-11970054 | Msa0442450:intron |
| CTTTAGAAACTGGAAGAAAT+GGG | 0.487764 | 3_3:-11968528 | Msa0442450:CDS |
| ACTGGAAGAAATGGGAAAGC+AGG | 0.507810 | 3_3:-11968520 | Msa0442450:CDS |
| ACATTACACAACCACCCTCT+TGG | 0.508399 | 3_3:-11968577 | Msa0442450:CDS |
| AAGTGCTTATGCTGGTTATG+TGG | 0.512014 | 3_3:-11970653 | Msa0442450:CDS |
| ATTCACTTACTTGTCCCAAA+AGG | 0.515012 | 3_3:+11969175 | None:intergenic |
| GCTAATGGCATTGCTATGAC+TGG | 0.516266 | 3_3:-11966979 | Msa0442450:CDS |
| CACTTAGAAGATTCTTCAGA+AGG | 0.517500 | 3_3:+11967437 | None:intergenic |
| GTAACTTTGCAAAAGAGGTA+TGG | 0.520424 | 3_3:+11967516 | None:intergenic |
| ACAACAATAGATGACATTAA+GGG | 0.521167 | 3_3:+11968451 | None:intergenic |
| AAATCTCTTGAACATTTGGA+TGG | 0.524926 | 3_3:-11971133 | Msa0442450:CDS |
| AACAAAGAATTCGGTGAAGA+GGG | 0.527031 | 3_3:-11971308 | Msa0442450:five_prime_UTR |
| ATGATGGGTATAGGGAAAGC+TGG | 0.534277 | 3_3:+11967682 | None:intergenic |
| GCGGTGAGTCCTAGAAGGTT+GGG | 0.538681 | 3_3:-11968064 | Msa0442450:CDS |
| TTTCAGGTGACCATAATCAC+TGG | 0.539650 | 3_3:-11967150 | Msa0442450:intron |
| AAGTACTATGACAATTGTCC+TGG | 0.541237 | 3_3:-11971204 | Msa0442450:CDS |
| CAATGGACTCATTGCCAAGA+GGG | 0.541868 | 3_3:+11968563 | None:intergenic |
| TTATGATATTTCTTATCAAG+AGG | 0.544878 | 3_3:-11968410 | Msa0442450:intron |
| TTAAGGGCCAGTTTAGGAAG+AGG | 0.546629 | 3_3:+11968467 | None:intergenic |
| ACATACCGGAAGCCAGATGC+AGG | 0.551614 | 3_3:+11968989 | None:intergenic |
| AAACAAAGAATTCGGTGAAG+AGG | 0.555418 | 3_3:-11971309 | None:intergenic |
| GTAGGATCTGCATTCATGCT+TGG | 0.560726 | 3_3:-11970537 | Msa0442450:intron |
| AACTTCACAACTGAAAATGT+TGG | 0.560964 | 3_3:-11968034 | Msa0442450:CDS |
| CTTACCATGAAATATAGGTA+AGG | 0.561973 | 3_3:+11970865 | None:intergenic |
| GGGAAGCAATATTAATCACT+AGG | 0.567739 | 3_3:+11967458 | None:intergenic |
| TCTCTTGAACATTTGGATGG+TGG | 0.569592 | 3_3:-11971130 | Msa0442450:CDS |
| ATACCCAAATCTATTTCCAA+AGG | 0.569665 | 3_3:-11969201 | Msa0442450:CDS |
| ACAATTGGTCCAGCTGGAGG+TGG | 0.572042 | 3_3:-11966940 | Msa0442450:CDS |
| AAAGCTGATATTGAAATGGA+AGG | 0.572666 | 3_3:+11969032 | None:intergenic |
| CCAGAAAGCATTGCTATGAA+GGG | 0.575436 | 3_3:+11967493 | None:intergenic |
| GGAATAGTAGCAGATCGTTA+CGG | 0.581193 | 3_3:-11970489 | Msa0442450:CDS |
| GAGGACATAAGTGCTTATGC+TGG | 0.604864 | 3_3:-11970661 | Msa0442450:CDS |
| CAGAAAGCATTGCTATGAAG+GGG | 0.615996 | 3_3:+11967494 | None:intergenic |
| TTTCAGTTCAGTGCAGCTTG+GGG | 0.620914 | 3_3:-11969562 | Msa0442450:intron |
| GCTTTGTCAACTTTACAACC+AGG | 0.622810 | 3_3:+11971186 | None:intergenic |
| ACTTAGAAGATTCTTCAGAA+GGG | 0.622991 | 3_3:+11967438 | None:intergenic |
| AAAACAATTGGTCCAGCTGG+AGG | 0.629594 | 3_3:-11966943 | Msa0442450:CDS |
| AGTGCTTATGCTGGTTATGT+GGG | 0.629937 | 3_3:-11970652 | Msa0442450:intron |
| TCTTATGCAAAATAGAGCAG+TGG | 0.631769 | 3_3:-11967121 | Msa0442450:intron |
| GAACAGGAACAACGTCAAAG+AGG | 0.640183 | 3_3:-11967006 | Msa0442450:intron |
| ATAGATCTTCTCATTATGGG+CGG | 0.644908 | 3_3:-11968083 | Msa0442450:intron |
| GTGAGTCCTAGAAGGTTGGG+TGG | 0.646831 | 3_3:-11968061 | Msa0442450:CDS |
| ATAATTGGACCAGCTTTGGG+AGG | 0.649173 | 3_3:-11969529 | Msa0442450:CDS |
| TGGACTCATTGCCAAGAGGG+TGG | 0.655428 | 3_3:+11968566 | None:intergenic |
| TTTGGATGGCCGTTACAACG+CGG | 0.675301 | 3_3:-11970097 | Msa0442450:CDS |
| TCTTTGACATCAATATCATG+GGG | 0.702667 | 3_3:-11970510 | Msa0442450:CDS |
| TCAATGGACTCATTGCCAAG+AGG | 0.702775 | 3_3:+11968562 | None:intergenic |
| AAGATTTGCTCGCATCTCCG+GGG | 0.729111 | 3_3:-11967637 | Msa0442450:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTTAACAATTTAGT+TGG | - | chr3_3:11969104-11969123 | Msa0442450:intron | 10.0% |
| !! | ATTTATAGAAATTATATTGA+TGG | + | chr3_3:11969615-11969634 | None:intergenic | 10.0% |
| !!! | ATTATATTTTAAGAAAATTG+TGG | - | chr3_3:11971183-11971202 | Msa0442450:CDS | 10.0% |
| !!! | ATGATAAATTAAAGTACTTA+TGG | + | chr3_3:11967949-11967968 | None:intergenic | 15.0% |
| !!! | TCATTTGTATATTTTGATAT+CGG | - | chr3_3:11968269-11968288 | Msa0442450:intron | 15.0% |
| !! | ATAAACAAACTTTATTAAGT+AGG | + | chr3_3:11969858-11969877 | None:intergenic | 15.0% |
| !! | TTAATTAGAATAACACATAA+TGG | + | chr3_3:11970072-11970091 | None:intergenic | 15.0% |
| !!! | TAAAATATAATCTCAACTTT+TGG | + | chr3_3:11971174-11971193 | None:intergenic | 15.0% |
| !! | TTAAACTTACCATGAAATAT+AGG | + | chr3_3:11967378-11967397 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTGGATGTTTAAA+TGG | - | chr3_3:11968161-11968180 | Msa0442450:intron | 20.0% |
| !! | AACTATAAAAGACATTATCT+AGG | + | chr3_3:11968526-11968545 | None:intergenic | 20.0% |
| !! | ATCAAGTTATGAATCAAATT+GGG | + | chr3_3:11968834-11968853 | None:intergenic | 20.0% |
| !! | TATGTTTGAATATACAAGTA+GGG | + | chr3_3:11968927-11968946 | None:intergenic | 20.0% |
| !!! | ATATATCATTGATTTTGATG+TGG | - | chr3_3:11969350-11969369 | Msa0442450:intron | 20.0% |
| !! | TTATGATATTTCTTATCAAG+AGG | - | chr3_3:11969825-11969844 | Msa0442450:intron | 20.0% |
| !! | TTAATAGATCTTCTCATTAT+GGG | - | chr3_3:11970149-11970168 | Msa0442450:intron | 20.0% |
| !! | AAGAGAATAATAAATCACTA+GGG | + | chr3_3:11970272-11970291 | None:intergenic | 20.0% |
| !! | TAAGAGAATAATAAATCACT+AGG | + | chr3_3:11970273-11970292 | None:intergenic | 20.0% |
| !! | TAGTGATTTATTATTCTCTT+AGG | - | chr3_3:11970272-11970291 | Msa0442450:intron | 20.0% |
| !!! | CAAAAGTTTTTTCTAATGAT+GGG | + | chr3_3:11970571-11970590 | None:intergenic | 20.0% |
| !! | GAATGAAATAAAGTTTAGAA+TGG | + | chr3_3:11971152-11971171 | None:intergenic | 20.0% |
| !! | ATGTCAATATTCAAAACAAT+TGG | - | chr3_3:11971280-11971299 | Msa0442450:five_prime_UTR | 20.0% |
| !!! | TTTTTTGCAACACAAAACAA+TGG | + | chr3_3:11966973-11966992 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTGTTGCAAAAAA+TGG | - | chr3_3:11966973-11966992 | Msa0442450:CDS | 25.0% |
| ! | AAAATGGAAGATGGAAATAT+TGG | - | chr3_3:11966989-11967008 | Msa0442450:CDS | 25.0% |
| !! | GAAAGTTTATCTGAAACAAT+AGG | - | chr3_3:11967439-11967458 | Msa0442450:CDS | 25.0% |
| !!! | ATCTAAAGTTTGCTAGATTT+TGG | - | chr3_3:11967478-11967497 | Msa0442450:CDS | 25.0% |
| ! | ATACTGTTCACATTAAATGT+TGG | + | chr3_3:11967514-11967533 | None:intergenic | 25.0% |
| ! | TTTCAATATTGCAAAAAGAG+AGG | - | chr3_3:11967552-11967571 | Msa0442450:intron | 25.0% |
| ! | ATGAAGATAAAACACATCAA+AGG | + | chr3_3:11967637-11967656 | None:intergenic | 25.0% |
| ! | ATCTTTGACATCAATATCAT+GGG | - | chr3_3:11967724-11967743 | Msa0442450:intron | 25.0% |
| !! | ATCATTTTCAACACACTATT+TGG | - | chr3_3:11968101-11968120 | Msa0442450:intron | 25.0% |
| !! | TTAGGTATTATTGTGTTGAT+TGG | + | chr3_3:11968209-11968228 | None:intergenic | 25.0% |
| ! | TGTTGAAGGATGAAAAATTT+AGG | + | chr3_3:11968227-11968246 | None:intergenic | 25.0% |
| ! | TAAAACATGACATTAACATG+TGG | + | chr3_3:11968474-11968493 | None:intergenic | 25.0% |
| ! | TGCCTTGAGTATATATAAAT+TGG | - | chr3_3:11968559-11968578 | Msa0442450:CDS | 25.0% |
| ! | AGCCAATTTATATATACTCA+AGG | + | chr3_3:11968564-11968583 | None:intergenic | 25.0% |
| !! | AGATCTGTTTTCATTACAAA+AGG | + | chr3_3:11968764-11968783 | None:intergenic | 25.0% |
| !!! | TTGAGAATAGTCTTAGATTT+TGG | - | chr3_3:11968783-11968802 | Msa0442450:intron | 25.0% |
| !! | TAGATTTTGGACTTAGAAAA+TGG | - | chr3_3:11968796-11968815 | Msa0442450:intron | 25.0% |
| ! | CATCAAGTTATGAATCAAAT+TGG | + | chr3_3:11968835-11968854 | None:intergenic | 25.0% |
| ! | TCTTTGATCATGACATATAT+AGG | + | chr3_3:11968881-11968900 | None:intergenic | 25.0% |
| ! | CTATGTTTGAATATACAAGT+AGG | + | chr3_3:11968928-11968947 | None:intergenic | 25.0% |
| !! | AATCCTTTGGAAATAGATTT+GGG | + | chr3_3:11969040-11969059 | None:intergenic | 25.0% |
| ! | TCAAAACATAATATTGTTGC+AGG | - | chr3_3:11969165-11969184 | Msa0442450:intron | 25.0% |
| !!! | AAAGAGAATTGAGTTGATTT+TGG | + | chr3_3:11969450-11969469 | None:intergenic | 25.0% |
| ! | ACAACAATAGATGACATTAA+GGG | + | chr3_3:11969787-11969806 | None:intergenic | 25.0% |
| ! | CAAACTTTATTAAGTAGGAA+TGG | + | chr3_3:11969853-11969872 | None:intergenic | 25.0% |
| ! | AGATCTATTAAGAAGTAGAA+TGG | + | chr3_3:11970140-11970159 | None:intergenic | 25.0% |
| ! | CTTAATAGATCTTCTCATTA+TGG | - | chr3_3:11970148-11970167 | Msa0442450:intron | 25.0% |
| ! | GGAATATATAGTGTAACTTT+AGG | - | chr3_3:11970328-11970347 | Msa0442450:intron | 25.0% |
| ! | AAAGACTTGAGTTATGATTA+TGG | + | chr3_3:11970392-11970411 | None:intergenic | 25.0% |
| !!! | CTAAGTATTGAAGTTATAAG+AGG | + | chr3_3:11970436-11970455 | None:intergenic | 25.0% |
| !!! | TTTTTCTAATGATGGGTATA+GGG | + | chr3_3:11970564-11970583 | None:intergenic | 25.0% |
| !!! | TTTTTTCTAATGATGGGTAT+AGG | + | chr3_3:11970565-11970584 | None:intergenic | 25.0% |
| !!! | CCAAAAGTTTTTTCTAATGA+TGG | + | chr3_3:11970572-11970591 | None:intergenic | 25.0% |
| !! | CCATCATTAGAAAAAACTTT+TGG | - | chr3_3:11970569-11970588 | Msa0442450:intron | 25.0% |
| ! | ATTATAACTTAACCTAGACT+AGG | - | chr3_3:11971003-11971022 | Msa0442450:intron | 25.0% |
| ! | AAGAAATAAACCAGTGATTA+TGG | + | chr3_3:11971098-11971117 | None:intergenic | 25.0% |
| ! | TAAGAAAATTGTGGCATAAA+TGG | - | chr3_3:11971192-11971211 | Msa0442450:CDS | 25.0% |
| TTCGAAATCTCTTGAACATT+TGG | - | chr3_3:11967098-11967117 | Msa0442450:intron | 30.0% | |
| AAATCTCTTGAACATTTGGA+TGG | - | chr3_3:11967102-11967121 | Msa0442450:intron | 30.0% | |
| TAAGGAAAGAGAGATGATAT+AGG | + | chr3_3:11967355-11967374 | None:intergenic | 30.0% | |
| CTTTCCTTACCTATATTTCA+TGG | - | chr3_3:11967366-11967385 | Msa0442450:intron | 30.0% | |
| CTTACCATGAAATATAGGTA+AGG | + | chr3_3:11967373-11967392 | None:intergenic | 30.0% | |
| ! | AACATTTTCACAGTCATAGT+AGG | + | chr3_3:11967678-11967697 | None:intergenic | 30.0% |
| TATGACTGTGAAAATGTTGT+AGG | - | chr3_3:11967680-11967699 | Msa0442450:CDS | 30.0% | |
| GATCTTTGACATCAATATCA+TGG | - | chr3_3:11967723-11967742 | Msa0442450:intron | 30.0% | |
| TCTTTGACATCAATATCATG+GGG | - | chr3_3:11967725-11967744 | Msa0442450:intron | 30.0% | |
| ! | AGAAAACCTGTTGCAATTTT+AGG | - | chr3_3:11967770-11967789 | Msa0442450:intron | 30.0% |
| ! | GAAAACCTGTTGCAATTTTA+GGG | - | chr3_3:11967771-11967790 | Msa0442450:intron | 30.0% |
| ATAATCCCTAAAATTGCAAC+AGG | + | chr3_3:11967779-11967798 | None:intergenic | 30.0% | |
| ! | ATTTGAGTTTGTCTACTTGT+AGG | - | chr3_3:11967849-11967868 | Msa0442450:intron | 30.0% |
| AAGTACTTATGGACAACTTA+TGG | + | chr3_3:11967938-11967957 | None:intergenic | 30.0% | |
| TTATCCAAATAGAGCGAATA+TGG | - | chr3_3:11968035-11968054 | Msa0442450:CDS | 30.0% | |
| AAAACCATATTCGCTCTATT+TGG | + | chr3_3:11968042-11968061 | None:intergenic | 30.0% | |
| TTTAATAATTGGACCAGCTT+TGG | - | chr3_3:11968702-11968721 | Msa0442450:intron | 30.0% | |
| TTAATAATTGGACCAGCTTT+GGG | - | chr3_3:11968703-11968722 | Msa0442450:intron | 30.0% | |
| GTTATGAATCAAATTGGGAA+TGG | + | chr3_3:11968829-11968848 | None:intergenic | 30.0% | |
| ATGTATAGTGAGAATACGAT+AGG | - | chr3_3:11968852-11968871 | Msa0442450:intron | 30.0% | |
| ! | AGATTTGGGTATTTTACAGT+TGG | + | chr3_3:11969026-11969045 | None:intergenic | 30.0% |
| ATACCCAAATCTATTTCCAA+AGG | - | chr3_3:11969034-11969053 | Msa0442450:CDS | 30.0% | |
| ! | GAATCCTTTGGAAATAGATT+TGG | + | chr3_3:11969041-11969060 | None:intergenic | 30.0% |
| ! | TATTTCCAAAGGATTCCTTT+TGG | - | chr3_3:11969045-11969064 | Msa0442450:CDS | 30.0% |
| ! | ATTTCCAAAGGATTCCTTTT+GGG | - | chr3_3:11969046-11969065 | Msa0442450:CDS | 30.0% |
| !!! | TATGTTTTGACAATGACAGT+CGG | + | chr3_3:11969155-11969174 | None:intergenic | 30.0% |
| AAAGCTGATATTGAAATGGA+AGG | + | chr3_3:11969206-11969225 | None:intergenic | 30.0% | |
| TGCAAAAGCTGATATTGAAA+TGG | + | chr3_3:11969210-11969229 | None:intergenic | 30.0% | |
| ! | AATATCAGCTTTTGCATTTG+CGG | - | chr3_3:11969214-11969233 | Msa0442450:CDS | 30.0% |
| CAACCATTTATGCTAAACTT+AGG | - | chr3_3:11969305-11969324 | Msa0442450:intron | 30.0% | |
| CTACCTAAGTTTAGCATAAA+TGG | + | chr3_3:11969311-11969330 | None:intergenic | 30.0% | |
| TAAAAAGGGAAGTAAAAGCA+GGG | + | chr3_3:11969556-11969575 | None:intergenic | 30.0% | |
| ATAAAAAGGGAAGTAAAAGC+AGG | + | chr3_3:11969557-11969576 | None:intergenic | 30.0% | |
| ! | CTTTAGAAACTGGAAGAAAT+GGG | - | chr3_3:11969707-11969726 | Msa0442450:intron | 30.0% |
| CACAACAATAGATGACATTA+AGG | + | chr3_3:11969788-11969807 | None:intergenic | 30.0% | |
| AACTTCACAACTGAAAATGT+TGG | - | chr3_3:11970201-11970220 | Msa0442450:intron | 30.0% | |
| TCTCTTACTTAATCAGAACT+AGG | - | chr3_3:11970307-11970326 | Msa0442450:intron | 30.0% | |
| CTTGAGTTATGATTATGGTT+TGG | + | chr3_3:11970387-11970406 | None:intergenic | 30.0% | |
| TTGAAGTTATAAGAGGAAGA+GGG | + | chr3_3:11970429-11970448 | None:intergenic | 30.0% | |
| ATTGAAGTTATAAGAGGAAG+AGG | + | chr3_3:11970430-11970449 | None:intergenic | 30.0% | |
| ACTTAGAAGATTCTTCAGAA+GGG | + | chr3_3:11970800-11970819 | None:intergenic | 30.0% | |
| TATTGTTAGAATCCTAGTCT+AGG | + | chr3_3:11971018-11971037 | None:intergenic | 30.0% | |
| GCTTACCTAATTGTATTACT+TGG | - | chr3_3:11971057-11971076 | Msa0442450:intron | 30.0% | |
| GTGTTGCAAAAAATGGAAGA+TGG | - | chr3_3:11966980-11966999 | Msa0442450:CDS | 35.0% | |
| AAGTACTATGACAATTGTCC+TGG | - | chr3_3:11967031-11967050 | Msa0442450:intron | 35.0% | |
| CAATATTGCAAAAAGAGAGG+AGG | - | chr3_3:11967555-11967574 | Msa0442450:intron | 35.0% | |
| GGACTATTTGAGAGATCTTA+TGG | - | chr3_3:11967870-11967889 | Msa0442450:intron | 35.0% | |
| AAGAAAAAACCGCGTTGTAA+CGG | + | chr3_3:11968150-11968169 | None:intergenic | 35.0% | |
| !! | GGATGTTTAAATGGTTTGCT+TGG | - | chr3_3:11968170-11968189 | Msa0442450:intron | 35.0% |
| ! | TCACATCCTTTTCTGATAAC+AGG | - | chr3_3:11968302-11968321 | Msa0442450:intron | 35.0% |
| AGTAAGCCTGTTATCAGAAA+AGG | + | chr3_3:11968311-11968330 | None:intergenic | 35.0% | |
| ATTCACTTACTTGTCCCAAA+AGG | + | chr3_3:11969063-11969082 | None:intergenic | 35.0% | |
| GAAATGGAAGGCAAGAAATA+TGG | + | chr3_3:11969194-11969213 | None:intergenic | 35.0% | |
| TTCCGGTATGTATATCTCAT+TGG | - | chr3_3:11969258-11969277 | Msa0442450:intron | 35.0% | |
| GTCCAATGAGATATACATAC+CGG | + | chr3_3:11969263-11969282 | None:intergenic | 35.0% | |
| ATGTGGTATCAGTAAAAGCA+GGG | - | chr3_3:11969367-11969386 | Msa0442450:intron | 35.0% | |
| TAAAGCTTCAGCATCATCAA+TGG | + | chr3_3:11969692-11969711 | None:intergenic | 35.0% | |
| !! | GCTTTAGAAACTGGAAGAAA+TGG | - | chr3_3:11969706-11969725 | Msa0442450:intron | 35.0% |
| ! | GGAAGAGGTTTTCATCTTTT+TGG | + | chr3_3:11969756-11969775 | None:intergenic | 35.0% |
| ATGAAAACCTCTTCCTAAAC+TGG | - | chr3_3:11969761-11969780 | Msa0442450:intron | 35.0% | |
| TGATGCTATCGTGTAAATCT+CGG | - | chr3_3:11970002-11970021 | Msa0442450:intron | 35.0% | |
| ATAGATCTTCTCATTATGGG+CGG | - | chr3_3:11970152-11970171 | Msa0442450:intron | 35.0% | |
| AGCTCTTCTCAAATGATCAA+TGG | - | chr3_3:11970507-11970526 | Msa0442450:CDS | 35.0% | |
| TTCTCAAATGATCAATGGTC+AGG | - | chr3_3:11970512-11970531 | Msa0442450:CDS | 35.0% | |
| AATGATCAATGGTCAGGTAT+TGG | - | chr3_3:11970518-11970537 | Msa0442450:CDS | 35.0% | |
| TAAGATTTCGCCATTCATAG+TGG | - | chr3_3:11970621-11970640 | Msa0442450:intron | 35.0% | |
| GTTGCATTAACCACTATGAA+TGG | + | chr3_3:11970634-11970653 | None:intergenic | 35.0% | |
| !! | GCTATTTTGTTACCTTGTGT+AGG | - | chr3_3:11970690-11970709 | Msa0442450:CDS | 35.0% |
| GTAACTTTGCAAAAGAGGTA+TGG | + | chr3_3:11970722-11970741 | None:intergenic | 35.0% | |
| GGGAAGCAATATTAATCACT+AGG | + | chr3_3:11970780-11970799 | None:intergenic | 35.0% | |
| CACTTAGAAGATTCTTCAGA+AGG | + | chr3_3:11970801-11970820 | None:intergenic | 35.0% | |
| GAAACTGCATCACTAATGAT+TGG | + | chr3_3:11970851-11970870 | None:intergenic | 35.0% | |
| ACCTAATTGTATTACTTGGC+TGG | - | chr3_3:11971061-11971080 | Msa0442450:intron | 35.0% | |
| TCCAGCCAAGTAATACAATT+AGG | + | chr3_3:11971065-11971084 | None:intergenic | 35.0% | |
| TCTTATGCAAAATAGAGCAG+TGG | - | chr3_3:11971114-11971133 | Msa0442450:intron | 35.0% | |
| ! | AATAGAGCAGTGGTAATGTT+TGG | - | chr3_3:11971124-11971143 | Msa0442450:CDS | 35.0% |
| ! | GCATAAATGGCATGTTGATT+TGG | - | chr3_3:11971205-11971224 | Msa0442450:CDS | 35.0% |
| GCTTTGTCAACTTTACAACC+AGG | + | chr3_3:11967052-11967071 | None:intergenic | 40.0% | |
| TCTCTTGAACATTTGGATGG+TGG | - | chr3_3:11967105-11967124 | Msa0442450:intron | 40.0% | |
| ! | AAGTGCTTATGCTGGTTATG+TGG | - | chr3_3:11967582-11967601 | Msa0442450:intron | 40.0% |
| ! | AGTGCTTATGCTGGTTATGT+GGG | - | chr3_3:11967583-11967602 | Msa0442450:intron | 40.0% |
| GGAATAGTAGCAGATCGTTA+CGG | - | chr3_3:11967746-11967765 | Msa0442450:intron | 40.0% | |
| CAGCATCAACAATGCTGTAA+CGG | + | chr3_3:11968065-11968084 | None:intergenic | 40.0% | |
| !!! | TTGGCCTTAGCACAAGTTTT+TGG | - | chr3_3:11968120-11968139 | Msa0442450:intron | 40.0% |
| CCATCCAAAAACTTGTGCTA+AGG | + | chr3_3:11968127-11968146 | None:intergenic | 40.0% | |
| !! | CCTTAGCACAAGTTTTTGGA+TGG | - | chr3_3:11968124-11968143 | Msa0442450:intron | 40.0% |
| !!! | GTTACAACGCGGTTTTTTCT+TGG | - | chr3_3:11968149-11968168 | Msa0442450:intron | 40.0% |
| !! | GTGTTGATTGGTACCTTCAT+TGG | + | chr3_3:11968197-11968216 | None:intergenic | 40.0% |
| TGATTGCTCTCTGATGTTGA+AGG | + | chr3_3:11968241-11968260 | None:intergenic | 40.0% | |
| AATCTTTGTCCGACACCTAT+AGG | - | chr3_3:11968390-11968409 | Msa0442450:intron | 40.0% | |
| ATCTTTGTCCGACACCTATA+GGG | - | chr3_3:11968391-11968410 | Msa0442450:intron | 40.0% | |
| TTGACACACGTGGTTACATT+CGG | - | chr3_3:11968416-11968435 | Msa0442450:CDS | 40.0% | |
| ATTTCAGTTCAGTGCAGCTT+GGG | - | chr3_3:11968672-11968691 | Msa0442450:intron | 40.0% | |
| TGGGGCATGGGTTTAATAAT+TGG | - | chr3_3:11968691-11968710 | Msa0442450:intron | 40.0% | |
| TTGTCCCAAAAGGAATCCTT+TGG | + | chr3_3:11969053-11969072 | None:intergenic | 40.0% | |
| CGGAACATCAACAATATGCT+TGG | + | chr3_3:11969135-11969154 | None:intergenic | 40.0% | |
| GATGTGGTATCAGTAAAAGC+AGG | - | chr3_3:11969366-11969385 | Msa0442450:intron | 40.0% | |
| !! | AGTTCTCTGAGATTCCTCTT+TGG | - | chr3_3:11969409-11969428 | Msa0442450:intron | 40.0% |
| TGCTTGTATCTGAACCAAAG+AGG | + | chr3_3:11969426-11969445 | None:intergenic | 40.0% | |
| ! | TTTTCGCGTGCGCATAAAAA+GGG | + | chr3_3:11969477-11969496 | None:intergenic | 40.0% |
| ! | TTTTTCGCGTGCGCATAAAA+AGG | + | chr3_3:11969478-11969497 | None:intergenic | 40.0% |
| ! | TTTTCGCGTGCGCATAAAAA+GGG | + | chr3_3:11969477-11969496 | None:intergenic | 40.0% |
| ! | TTTTTCGCGTGCGCATAAAA+AGG | + | chr3_3:11969478-11969497 | None:intergenic | 40.0% |
| !! | GATGCTGAAGCTTTAGAAAC+TGG | - | chr3_3:11969697-11969716 | Msa0442450:intron | 40.0% |
| ATGACATTAAGGGCCAGTTT+AGG | + | chr3_3:11969777-11969796 | None:intergenic | 40.0% | |
| GGTGATGTTCTTGCAATATC+AGG | - | chr3_3:11970222-11970241 | Msa0442450:intron | 40.0% | |
| GTATGGATAACACCTACACA+AGG | + | chr3_3:11970705-11970724 | None:intergenic | 40.0% | |
| AAGGGGTAACTTTGCAAAAG+AGG | + | chr3_3:11970727-11970746 | None:intergenic | 40.0% | |
| !! | CAGAAAGCATTGCTATGAAG+GGG | + | chr3_3:11970744-11970763 | None:intergenic | 40.0% |
| !! | CCAGAAAGCATTGCTATGAA+GGG | + | chr3_3:11970745-11970764 | None:intergenic | 40.0% |
| !! | TCCAGAAAGCATTGCTATGA+AGG | + | chr3_3:11970746-11970765 | None:intergenic | 40.0% |
| GTATTACTTGGCTGGATTTC+AGG | - | chr3_3:11971069-11971088 | Msa0442450:intron | 40.0% | |
| ! | TTTCAGGTGACCATAATCAC+TGG | - | chr3_3:11971085-11971104 | Msa0442450:intron | 40.0% |
| TTCAAAACAATTGGTCCAGC+TGG | - | chr3_3:11971289-11971308 | Msa0442450:five_prime_UTR | 40.0% | |
| GAGGACATAAGTGCTTATGC+TGG | - | chr3_3:11967574-11967593 | Msa0442450:intron | 45.0% | |
| GTAGGATCTGCATTCATGCT+TGG | - | chr3_3:11967698-11967717 | Msa0442450:CDS | 45.0% | |
| ACAACTGACGCACATGTCAT+AGG | + | chr3_3:11967902-11967921 | None:intergenic | 45.0% | |
| !! | TGGTTTGCTTGGACCAATGA+AGG | - | chr3_3:11968181-11968200 | Msa0442450:intron | 45.0% |
| CGAGAAGAAAAGCAAGCTCT+TGG | - | chr3_3:11968345-11968364 | Msa0442450:intron | 45.0% | |
| TGTCAATGCCCTATAGGTGT+CGG | + | chr3_3:11968402-11968421 | None:intergenic | 45.0% | |
| GTTTCACCATCTCATGTGTC+AGG | - | chr3_3:11968607-11968626 | Msa0442450:intron | 45.0% | |
| GATTTCAGTTCAGTGCAGCT+TGG | - | chr3_3:11968671-11968690 | Msa0442450:intron | 45.0% | |
| TTTCAGTTCAGTGCAGCTTG+GGG | - | chr3_3:11968673-11968692 | Msa0442450:intron | 45.0% | |
| !! | ATAATTGGACCAGCTTTGGG+AGG | - | chr3_3:11968706-11968725 | Msa0442450:intron | 45.0% |
| !! | ACCAGCTTTGGGAGGTTATT+TGG | - | chr3_3:11968714-11968733 | Msa0442450:intron | 45.0% |
| ! | TTTGGGAGGTTATTTGGCTC+AGG | - | chr3_3:11968720-11968739 | Msa0442450:intron | 45.0% |
| ACATTACACAACCACCCTCT+TGG | - | chr3_3:11969658-11969677 | Msa0442450:intron | 45.0% | |
| ! | CAATGGACTCATTGCCAAGA+GGG | + | chr3_3:11969675-11969694 | None:intergenic | 45.0% |
| ! | TCAATGGACTCATTGCCAAG+AGG | + | chr3_3:11969676-11969695 | None:intergenic | 45.0% |
| ACTGGAAGAAATGGGAAAGC+AGG | - | chr3_3:11969715-11969734 | Msa0442450:intron | 45.0% | |
| TTAAGGGCCAGTTTAGGAAG+AGG | + | chr3_3:11969771-11969790 | None:intergenic | 45.0% | |
| TTCAAACCACCCAACCTTCT+AGG | + | chr3_3:11970183-11970202 | None:intergenic | 45.0% | |
| !! | ATGATGGGTATAGGGAAAGC+TGG | + | chr3_3:11970556-11970575 | None:intergenic | 45.0% |
| GAGATGCGAGCAAATCTTAC+AGG | + | chr3_3:11970596-11970615 | None:intergenic | 45.0% | |
| ! | GTAAGATTTGCTCGCATCTC+CGG | - | chr3_3:11970596-11970615 | Msa0442450:intron | 45.0% |
| ! | TAAGATTTGCTCGCATCTCC+GGG | - | chr3_3:11970597-11970616 | Msa0442450:intron | 45.0% |
| TGAATGGCGAAATCTTACCC+CGG | + | chr3_3:11970618-11970637 | None:intergenic | 45.0% | |
| CCCTTCATAGCAATGCTTTC+TGG | - | chr3_3:11970742-11970761 | Msa0442450:intron | 45.0% | |
| AGGCAGAATGAATCGCAAGA+TGG | + | chr3_3:11970940-11970959 | None:intergenic | 45.0% | |
| TCGCATATGAGTGATAAGCG+AGG | + | chr3_3:11970977-11970996 | None:intergenic | 45.0% | |
| TCGCTTATCACTCATATGCG+AGG | - | chr3_3:11970976-11970995 | Msa0442450:intron | 45.0% | |
| !! | GGCATGTTGATTTGGAGAAC+AGG | - | chr3_3:11971213-11971232 | Msa0442450:CDS | 45.0% |
| GAACAGGAACAACGTCAAAG+AGG | - | chr3_3:11971229-11971248 | Msa0442450:CDS | 45.0% | |
| GCTAATGGCATTGCTATGAC+TGG | - | chr3_3:11971256-11971275 | Msa0442450:exon | 45.0% | |
| AAAACAATTGGTCCAGCTGG+AGG | - | chr3_3:11971292-11971311 | Msa0442450:five_prime_UTR | 45.0% | |
| TTTGGATGGCCGTTACAACG+CGG | - | chr3_3:11968138-11968157 | Msa0442450:intron | 50.0% | |
| CACGTGTGTCAATGCCCTAT+AGG | + | chr3_3:11968408-11968427 | None:intergenic | 50.0% | |
| !! | CTATAGGGCATTGACACACG+TGG | - | chr3_3:11968406-11968425 | Msa0442450:intron | 50.0% |
| !! | TATCTAGGAAGCGCTAACGC+AGG | + | chr3_3:11968511-11968530 | None:intergenic | 50.0% |
| GAGAGACCTGACACATGAGA+TGG | + | chr3_3:11968616-11968635 | None:intergenic | 50.0% | |
| GCCAAATAACCTCCCAAAGC+TGG | + | chr3_3:11968718-11968737 | None:intergenic | 50.0% | |
| CGGTAGTAATTGCCTGCATC+TGG | - | chr3_3:11969234-11969253 | Msa0442450:intron | 50.0% | |
| ! | AATTGCCTGCATCTGGCTTC+CGG | - | chr3_3:11969241-11969260 | Msa0442450:intron | 50.0% |
| ATGCATGTCTGCTCGACTGT+AGG | - | chr3_3:11969633-11969652 | Msa0442450:intron | 50.0% | |
| ! | AAGATTTGCTCGCATCTCCG+GGG | - | chr3_3:11970598-11970617 | Msa0442450:intron | 50.0% |
| TGATAAGCGAGGCTCCAGAT+CGG | + | chr3_3:11970966-11970985 | None:intergenic | 50.0% | |
| CGTCAAAGAGGAGCAGCTAA+TGG | - | chr3_3:11971241-11971260 | Msa0442450:CDS | 50.0% | |
| TTCAGTGCAGCTTGGGGCAT+GGG | - | chr3_3:11968679-11968698 | Msa0442450:intron | 55.0% | |
| ACATACCGGAAGCCAGATGC+AGG | + | chr3_3:11969249-11969268 | None:intergenic | 55.0% | |
| TGGACTCATTGCCAAGAGGG+TGG | + | chr3_3:11969672-11969691 | None:intergenic | 55.0% | |
| TATGGGCGGTGAGTCCTAGA+AGG | - | chr3_3:11970166-11970185 | Msa0442450:intron | 55.0% | |
| GCGGTGAGTCCTAGAAGGTT+GGG | - | chr3_3:11970171-11970190 | Msa0442450:intron | 55.0% | |
| GTGAGTCCTAGAAGGTTGGG+TGG | - | chr3_3:11970174-11970193 | Msa0442450:intron | 55.0% | |
| TCATTCTGCCTCCACCGATC+TGG | - | chr3_3:11970949-11970968 | Msa0442450:intron | 55.0% | |
| ACAATTGGTCCAGCTGGAGG+TGG | - | chr3_3:11971295-11971314 | Msa0442450:five_prime_UTR | 55.0% | |
| GTTCAGTGCAGCTTGGGGCA+TGG | - | chr3_3:11968678-11968697 | Msa0442450:intron | 60.0% | |
| GGCGGTGAGTCCTAGAAGGT+TGG | - | chr3_3:11970170-11970189 | Msa0442450:intron | 60.0% | |
| TAAGCGAGGCTCCAGATCGG+TGG | + | chr3_3:11970963-11970982 | None:intergenic | 60.0% | |
| CACACTGCACCACCTCCAGC+TGG | + | chr3_3:11971307-11971326 | None:intergenic | 65.0% | |
| GCGAGGCTCCAGATCGGTGG+AGG | + | chr3_3:11970960-11970979 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 11966930 | 11971327 | 11966930 | ID=Msa0442450;Name=Msa0442450 |
| chr3_3 | mRNA | 11966930 | 11971327 | 11966930 | ID=Msa0442450-mRNA-1;Parent=Msa0442450;Name=Msa0442450-mRNA-1;_AED=0.20;_eAED=0.20;_QI=62|0.64|0.6|1|1|1|15|0|436 |
| chr3_3 | exon | 11966930 | 11967022 | 11966930 | ID=Msa0442450-mRNA-1:exon:2600;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11967122 | 11967166 | 11967122 | ID=Msa0442450-mRNA-1:exon:2599;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11967438 | 11967545 | 11967438 | ID=Msa0442450-mRNA-1:exon:2598;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11967638 | 11967723 | 11967638 | ID=Msa0442450-mRNA-1:exon:2597;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11968014 | 11968101 | 11968014 | ID=Msa0442450-mRNA-1:exon:2596;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11968411 | 11968602 | 11968411 | ID=Msa0442450-mRNA-1:exon:2595;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11968995 | 11969070 | 11968995 | ID=Msa0442450-mRNA-1:exon:2594;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11969185 | 11969234 | 11969185 | ID=Msa0442450-mRNA-1:exon:2593;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11969516 | 11969578 | 11969516 | ID=Msa0442450-mRNA-1:exon:2592;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11969880 | 11969933 | 11969880 | ID=Msa0442450-mRNA-1:exon:2591;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11970055 | 11970157 | 11970055 | ID=Msa0442450-mRNA-1:exon:2590;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11970453 | 11970555 | 11970453 | ID=Msa0442450-mRNA-1:exon:2589;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11970653 | 11970713 | 11970653 | ID=Msa0442450-mRNA-1:exon:2588;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11970870 | 11970910 | 11970870 | ID=Msa0442450-mRNA-1:exon:2587;Parent=Msa0442450-mRNA-1 |
| chr3_3 | exon | 11971118 | 11971327 | 11971118 | ID=Msa0442450-mRNA-1:exon:2586;Parent=Msa0442450-mRNA-1 |
| chr3_3 | five_prime_UTR | 11971266 | 11971327 | 11971266 | ID=Msa0442450-mRNA-1:five_prime_utr;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11971118 | 11971265 | 11971118 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11970870 | 11970910 | 11970870 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11970653 | 11970713 | 11970653 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11970453 | 11970555 | 11970453 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11970055 | 11970157 | 11970055 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11969880 | 11969933 | 11969880 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11969516 | 11969578 | 11969516 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11969185 | 11969234 | 11969185 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11968995 | 11969070 | 11968995 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11968411 | 11968602 | 11968411 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11968014 | 11968101 | 11968014 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11967638 | 11967723 | 11967638 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11967438 | 11967545 | 11967438 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11967122 | 11967166 | 11967122 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| chr3_3 | CDS | 11966930 | 11967022 | 11966930 | ID=Msa0442450-mRNA-1:cds;Parent=Msa0442450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
