AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0348070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348070 MtrunA17_Chr3g0080421 98.305 118 2 0 1 118 370 487 1.33e-76 234
Msa0348070 MtrunA17_Chr8g0354831 74.576 118 30 0 1 118 370 487 5.55e-58 186
Msa0348070 MtrunA17_Chr8g0354891 73.729 118 31 0 1 118 367 484 5.04e-57 183
Msa0348070 MtrunA17_Chr8g0354841 72.034 118 33 0 1 118 363 480 4.70e-55 178
Msa0348070 MtrunA17_Chr8g0354851 64.234 137 30 1 1 118 363 499 6.14e-52 170
Msa0348070 MtrunA17_Chr3g0080431 65.254 118 40 1 1 118 365 481 3.77e-47 157
Msa0348070 MtrunA17_Chr3g0123441 81.395 86 16 0 1 86 30 115 1.20e-43 139
Msa0348070 MtrunA17_Chr8g0354861 78.049 82 18 0 1 82 222 303 8.05e-40 134
Msa0348070 MtrunA17_Chr8g0364441 80.488 82 1 1 1 82 386 452 1.86e-34 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348070 AT3G43790.1 58.333 108 45 0 1 108 369 476 8.74e-42 143
Msa0348070 AT3G43790.4 58.333 108 45 0 1 108 369 476 8.74e-42 143
Msa0348070 AT5G13750.2 57.273 110 47 0 2 111 283 392 2.69e-39 135
Msa0348070 AT3G43790.2 55.263 114 45 1 1 108 369 482 3.03e-39 137
Msa0348070 AT3G43790.3 55.263 114 45 1 1 108 369 482 3.03e-39 137
Msa0348070 AT5G13750.1 57.273 110 47 0 2 111 369 478 9.34e-39 135
Msa0348070 AT5G13740.1 64.000 100 36 0 12 111 387 486 1.05e-36 130
Msa0348070 AT5G13740.2 72.222 54 15 0 12 65 387 440 3.70e-20 84.7

Find 66 sgRNAs with CRISPR-Local

Find 618 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTCATAGCAATGCTTTC+TGG 0.080739 3_1:+9948749 Msa0348070:exon
CTTAATAGATCTTCTCATTA+TGG 0.133209 3_1:+9948152 Msa0348070:five_prime_UTR
AAAATCCTCTTTAGAGAAAA+AGG 0.164878 3_1:+9955921 Msa0348070:three_prime_UTR
AGATTGATGCTTTCACATTA+TGG 0.224884 3_1:+9955978 Msa0348070:three_prime_UTR
TTATCACATACGGACAAAAT+TGG 0.273497 3_1:-9956132 None:intergenic
TTAATAGATCTTCTCATTAT+GGG 0.296541 3_1:+9948153 Msa0348070:five_prime_UTR
AAGAAATAAACCAGTGATTA+TGG 0.311778 3_1:-9949096 None:intergenic
TCTCTGTTGTACGATCTATT+AGG 0.322162 3_1:+9956082 Msa0348070:three_prime_UTR
CAAGTCCTCCAGCAATATTC+AGG 0.325855 3_1:-9955793 None:intergenic
CTGAATATTGCTGGAGGACT+TGG 0.333786 3_1:+9955794 Msa0348070:CDS
TTCAAACCACCTAACCTTCT+AGG 0.336667 3_1:-9948184 None:intergenic
GTAAGATTTGCTCGCATCTC+CGG 0.354320 3_1:+9948603 Msa0348070:five_prime_UTR
GAGATGCGAGCAAATCTTAC+AGG 0.370847 3_1:-9948600 None:intergenic
GGTGATGTTCTTGCAATATC+AGG 0.378966 3_1:+9948226 Msa0348070:five_prime_UTR
CGAACATGTGATACGGGACT+TGG 0.385121 3_1:-9956160 None:intergenic
TAAGATTTGCTCGCATCTCC+GGG 0.414274 3_1:+9948604 Msa0348070:five_prime_UTR
AATTACACTAACATAAATAA+AGG 0.420416 3_1:+9955873 Msa0348070:exon
TTCAAAACAATTGGTCCAGC+TGG 0.422073 3_1:+9949290 Msa0348070:CDS
TCCAGAAAGCATTGCTATGA+AGG 0.448179 3_1:-9948750 None:intergenic
CACATACGGACAAAATTGGT+TGG 0.453912 3_1:-9956128 None:intergenic
CATAACTGCAGGCACTCATA+TGG 0.456421 3_1:+9955760 Msa0348070:intron
ATGTCAATATTCAAAACAAT+TGG 0.466702 3_1:+9949281 Msa0348070:CDS
CACACTGCACCACCTCCAGC+TGG 0.476747 3_1:-9949305 None:intergenic
CGTCAAAGAGGAGCAGCTAA+TGG 0.482536 3_1:+9949242 Msa0348070:CDS
AAGGGGTAACTTTGCAAAAG+AGG 0.484476 3_1:-9948731 None:intergenic
TATGGGCGGTGAGTCCTAGA+AGG 0.488224 3_1:+9948170 Msa0348070:five_prime_UTR
ATAATGTGAAAGCATCAATC+TGG 0.495978 3_1:-9955976 None:intergenic
TTTGTTCATTCAGATTAGCT+TGG 0.505473 3_1:+9955477 Msa0348070:intron
GCGGTGAGTCCTAGAAGGTT+AGG 0.507497 3_1:+9948175 Msa0348070:five_prime_UTR
GCTAATGGCATTGCTATGAC+TGG 0.516266 3_1:+9949257 Msa0348070:CDS
GAGAAAATAATCTCATGTGT+TGG 0.516453 3_1:+9947998 Msa0348070:five_prime_UTR
CACTTAGAAGATTCTTCAGA+AGG 0.517500 3_1:-9948805 None:intergenic
GTAACTTTGCAAAAGAGGTA+TGG 0.520424 3_1:-9948726 None:intergenic
ATGATGGGTATAGGGAAAGC+TGG 0.534277 3_1:-9948560 None:intergenic
CAGACTACGAACATGTGATA+CGG 0.539349 3_1:-9956167 None:intergenic
TGTTAGTGTAATTGCTGAGA+GGG 0.539452 3_1:-9955863 None:intergenic
TTTCAGGTGACCATAATCAC+TGG 0.539650 3_1:+9949086 Msa0348070:intron
ACATACGGACAAAATTGGTT+GGG 0.543552 3_1:-9956127 None:intergenic
AGATCTATTAAGAAGTAGAA+TGG 0.547859 3_1:-9948141 None:intergenic
TGACGATGAATACTGTAACT+TGG 0.548213 3_1:-9956044 None:intergenic
ATGAATGCATCTTTCCTCCC+AGG 0.559191 3_1:+9955512 Msa0348070:CDS
AACTTCACAACTGAAAATGT+TGG 0.560964 3_1:+9948205 Msa0348070:five_prime_UTR
TTTGTCCTGAATATTGCTGG+AGG 0.566596 3_1:+9955788 Msa0348070:CDS
GGGAAGCAATATTAATCACT+AGG 0.567739 3_1:-9948784 None:intergenic
CTTGGGCATCTTATCACATA+CGG 0.570329 3_1:-9956142 None:intergenic
ACAATTGGTCCAGCTGGAGG+TGG 0.572042 3_1:+9949296 Msa0348070:CDS
AGACTACGAACATGTGATAC+GGG 0.572146 3_1:-9956166 None:intergenic
CCAGAAAGCATTGCTATGAA+GGG 0.575436 3_1:-9948749 None:intergenic
TACGGACAAAATTGGTTGGG+AGG 0.578612 3_1:-9956124 None:intergenic
TATTATTGCAGATCAATCAC+AGG 0.582642 3_1:+9955952 Msa0348070:three_prime_UTR
GAACATGTGATACGGGACTT+GGG 0.582928 3_1:-9956159 None:intergenic
TTAATTAGAATAACACATAA+CGG 0.585494 3_1:-9948073 None:intergenic
AGCAAATCTTACAGGTCCAA+AGG 0.586458 3_1:-9948592 None:intergenic
ACGGACAAAATTGGTTGGGA+GGG 0.588524 3_1:-9956123 None:intergenic
CAGAAAGCATTGCTATGAAG+GGG 0.615996 3_1:-9948748 None:intergenic
ACGCTTTCTATCTGAAGTGT+CGG 0.622044 3_1:+9948031 Msa0348070:five_prime_UTR
ACTTAGAAGATTCTTCAGAA+GGG 0.622991 3_1:-9948804 None:intergenic
TCTTATGCAAAATAGAGCTG+TGG 0.626847 3_1:+9949115 Msa0348070:CDS
AAAACAATTGGTCCAGCTGG+AGG 0.629594 3_1:+9949293 Msa0348070:CDS
GTGAGTCCTAGAAGGTTAGG+TGG 0.634850 3_1:+9948178 Msa0348070:five_prime_UTR
GAACAGGAACAACGTCAAAG+AGG 0.640183 3_1:+9949230 Msa0348070:intron
ATAGATCTTCTCATTATGGG+CGG 0.644908 3_1:+9948156 Msa0348070:five_prime_UTR
TACGATCTATTAGGTGCACA+AGG 0.667044 3_1:+9956091 Msa0348070:three_prime_UTR
ATGTTAGTGTAATTGCTGAG+AGG 0.694825 3_1:-9955864 None:intergenic
AAGATTTGCTCGCATCTCCG+GGG 0.729111 3_1:+9948605 Msa0348070:five_prime_UTR
AGTTGAGCATCATACCTGGG+AGG 0.739489 3_1:-9955526 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATAATCTTAACTTT+TGG - chr3_1:9949173-9949192 None:intergenic 10.0%
!! ATATTATAATAAACCTAATT+AGG + chr3_1:9949521-9949540 Msa0348070:intron 10.0%
!! TATTATAATAAACCTAATTA+GGG + chr3_1:9949522-9949541 Msa0348070:intron 10.0%
!! TAAATTAGTATTAATTGAAA+TGG + chr3_1:9949561-9949580 Msa0348070:intron 10.0%
!! AAATTAGTATTAATTGAAAT+GGG + chr3_1:9949562-9949581 Msa0348070:intron 10.0%
!!! AAAAAAAAAAAAAAAAGCAT+TGG - chr3_1:9951237-9951256 None:intergenic 10.0%
!!! AAAACTTTTACTATAAATAT+AGG + chr3_1:9951705-9951724 Msa0348070:intron 10.0%
!!! AAAACTTTTACTATAAATAT+AGG + chr3_1:9951705-9951724 Msa0348070:intron 10.0%
!! TTAATTAGAATAACACATAA+CGG - chr3_1:9948076-9948095 None:intergenic 15.0%
!! AATATATAGTGTATAACTTT+AGG + chr3_1:9948334-9948353 Msa0348070:intron 15.0%
!!! AGTTAAGATTATATATTTTG+AGG + chr3_1:9949175-9949194 Msa0348070:intron 15.0%
!!! GTTTATTATAATATTAGTCT+AGG - chr3_1:9949515-9949534 None:intergenic 15.0%
!! AAAACATTAGTTATTTAATC+AGG + chr3_1:9949704-9949723 Msa0348070:intron 15.0%
!!! TGCTTTTTTTTTTTTTTTTG+AGG + chr3_1:9951238-9951257 Msa0348070:intron 15.0%
!!! GCTTTTTTTTTTTTTTTTGA+GGG + chr3_1:9951239-9951258 Msa0348070:intron 15.0%
!!! TAAAAGTTTTGCTTAAAATT+TGG - chr3_1:9951695-9951714 None:intergenic 15.0%
!!! TAAAAGTTTTGCTTAAAATT+TGG - chr3_1:9951695-9951714 None:intergenic 15.0%
!! AAATATATTACATATACACT+TGG + chr3_1:9955382-9955401 Msa0348070:intron 15.0%
!! AATTACACTAACATAAATAA+AGG + chr3_1:9955873-9955892 Msa0348070:exon 15.0%
!! TTATACAAAAAAATATTCGA+TGG - chr3_1:9956024-9956043 None:intergenic 15.0%
!! TTAATAGATCTTCTCATTAT+GGG + chr3_1:9948153-9948172 Msa0348070:five_prime_UTR 20.0%
!! AAGAGAATAATAAATCACTA+GGG - chr3_1:9948276-9948295 None:intergenic 20.0%
!! TAAGAGAATAATAAATCACT+AGG - chr3_1:9948277-9948296 None:intergenic 20.0%
!! TAGTGATTTATTATTCTCTT+AGG + chr3_1:9948276-9948295 Msa0348070:intron 20.0%
!!! TATATATTTTGAGGAAATTG+TGG + chr3_1:9949184-9949203 Msa0348070:intron 20.0%
!! ATGTCAATATTCAAAACAAT+TGG + chr3_1:9949281-9949300 Msa0348070:CDS 20.0%
!! ATAAGTAAAATAAAAGCTAG+AGG - chr3_1:9949346-9949365 None:intergenic 20.0%
!! ATTAATTGAAATGGGAAAAA+AGG + chr3_1:9949570-9949589 Msa0348070:intron 20.0%
!!! TTTATATATTTGATAGCTTC+AGG - chr3_1:9949804-9949823 None:intergenic 20.0%
!!! TTATTATCTAGAATGTTATG+AGG - chr3_1:9949843-9949862 None:intergenic 20.0%
!!! TTCACTATTTTAGAGTTTTT+GGG - chr3_1:9950432-9950451 None:intergenic 20.0%
!! TAAAGAAAGAAATGGTAAAA+GGG - chr3_1:9950989-9951008 None:intergenic 20.0%
!! ATAAAGAAAGAAATGGTAAA+AGG - chr3_1:9950990-9951009 None:intergenic 20.0%
!! AACTCTTATAAAGAAAGAAA+TGG - chr3_1:9950997-9951016 None:intergenic 20.0%
!!! AGAAATAATTTGTTAAGCAT+TGG - chr3_1:9951275-9951294 None:intergenic 20.0%
!! ACTAATGTGTATTATTTACT+AGG - chr3_1:9951302-9951321 None:intergenic 20.0%
!! TTTAAACGATTCAAATATCT+AGG - chr3_1:9952693-9952712 None:intergenic 20.0%
! AGATCTATTAAGAAGTAGAA+TGG - chr3_1:9948144-9948163 None:intergenic 25.0%
! CTTAATAGATCTTCTCATTA+TGG + chr3_1:9948152-9948171 Msa0348070:five_prime_UTR 25.0%
!! TTTGAGTTATGATTATGGTT+TGG - chr3_1:9948393-9948412 None:intergenic 25.0%
!! AAGACTTTGAGTTATGATTA+TGG - chr3_1:9948398-9948417 None:intergenic 25.0%
!!! CTAAGTATTGAAGTTATAAG+AGG - chr3_1:9948443-9948462 None:intergenic 25.0%
!!! TTTTTCTAATGATGGGTATA+GGG - chr3_1:9948571-9948590 None:intergenic 25.0%
!!! TTTTTTCTAATGATGGGTAT+AGG - chr3_1:9948572-9948591 None:intergenic 25.0%
!!! CAAAGGTTTTTTCTAATGAT+GGG - chr3_1:9948578-9948597 None:intergenic 25.0%
!!! GTTATTTTGTTACCTTATGT+AGG + chr3_1:9948697-9948716 Msa0348070:intron 25.0%
! ATTATAACTTAACCTAGACT+AGG + chr3_1:9949004-9949023 Msa0348070:intron 25.0%
! AAGAAATAAACCAGTGATTA+TGG - chr3_1:9949099-9949118 None:intergenic 25.0%
! TCTTTCATTGTTACAAATTG+TGG + chr3_1:9949365-9949384 Msa0348070:intron 25.0%
! TAGTATTACAATAATCCTGA+AGG + chr3_1:9949481-9949500 Msa0348070:intron 25.0%
! TAAATGATGAAAAGAACAAC+AGG - chr3_1:9950195-9950214 None:intergenic 25.0%
!!! GTTCACTATTTTAGAGTTTT+TGG - chr3_1:9950433-9950452 None:intergenic 25.0%
!! GAGATGTATCAAAGATATTT+TGG - chr3_1:9950558-9950577 None:intergenic 25.0%
!! AAAGTTTTTCATCCTGAAAA+GGG - chr3_1:9951167-9951186 None:intergenic 25.0%
! TTAGGTTCTTATTCTATAAC+TGG + chr3_1:9951211-9951230 Msa0348070:intron 25.0%
!!! TTTTTTTTGAGGGAAATAAC+TGG + chr3_1:9951249-9951268 Msa0348070:intron 25.0%
! ATATGATAGGAACTAAAGAT+TGG - chr3_1:9951442-9951461 None:intergenic 25.0%
! AGTTAACTCTTACATATGAT+AGG - chr3_1:9951455-9951474 None:intergenic 25.0%
! GTAAGAGTTAACTTAAAATC+AGG + chr3_1:9951462-9951481 Msa0348070:intron 25.0%
! TCTTAAAATAGTCTGATACA+AGG - chr3_1:9951731-9951750 None:intergenic 25.0%
!!! ACTATTTTAAGAGAGATAGA+GGG + chr3_1:9951739-9951758 Msa0348070:intron 25.0%
! TTTGTATATGACAAAGTCTT+TGG + chr3_1:9952503-9952522 Msa0348070:intron 25.0%
! GTAAGAGTTAACTTAAAATC+AGG + chr3_1:9951462-9951481 Msa0348070:intron 25.0%
! TCTTAAAATAGTCTGATACA+AGG - chr3_1:9951731-9951750 None:intergenic 25.0%
!!! ACTATTTTAAGAGAGATAGA+GGG + chr3_1:9951739-9951758 Msa0348070:intron 25.0%
! AAGAAAGATTAAAGATCTCA+AGG - chr3_1:9954843-9954862 None:intergenic 25.0%
! ATCTTATAACTCATCAAACT+TGG + chr3_1:9954982-9955001 Msa0348070:intron 25.0%
! TCTTATAACTCATCAAACTT+GGG + chr3_1:9954983-9955002 Msa0348070:intron 25.0%
!!! CAAACAAAAACACAGTTTTT+TGG - chr3_1:9955141-9955160 None:intergenic 25.0%
! AACTAACTTCTAACACTATT+AGG + chr3_1:9955322-9955341 Msa0348070:intron 25.0%
! ACTAACTTCTAACACTATTA+GGG + chr3_1:9955323-9955342 Msa0348070:intron 25.0%
! TTTCTTTCTATTACTTGTGT+AGG - chr3_1:9955603-9955622 None:intergenic 25.0%
!! TTCTTCTTTTCAGTCAAAAA+TGG - chr3_1:9955839-9955858 None:intergenic 25.0%
!! AGAGGATTTTTATAGAGAAA+AGG - chr3_1:9955911-9955930 None:intergenic 25.0%
!! AAAATCCTCTTTAGAGAAAA+AGG + chr3_1:9955921-9955940 Msa0348070:three_prime_UTR 25.0%
!! AAATCCTCTTTAGAGAAAAA+GGG + chr3_1:9955922-9955941 Msa0348070:three_prime_UTR 25.0%
GAGAAAATAATCTCATGTGT+TGG + chr3_1:9947998-9948017 Msa0348070:five_prime_UTR 30.0%
AACTTCACAACTGAAAATGT+TGG + chr3_1:9948205-9948224 Msa0348070:five_prime_UTR 30.0%
TCTCTTACTTAATCAGAACT+AGG + chr3_1:9948311-9948330 Msa0348070:intron 30.0%
TTGAAGTTATAAGAGGAAGA+GGG - chr3_1:9948436-9948455 None:intergenic 30.0%
ATTGAAGTTATAAGAGGAAG+AGG - chr3_1:9948437-9948456 None:intergenic 30.0%
!!! CCAAAGGTTTTTTCTAATGA+TGG - chr3_1:9948579-9948598 None:intergenic 30.0%
CCATCATTAGAAAAAACCTT+TGG + chr3_1:9948576-9948595 Msa0348070:five_prime_UTR 30.0%
ACTTAGAAGATTCTTCAGAA+GGG - chr3_1:9948807-9948826 None:intergenic 30.0%
TATTGTTAGAATCCTAGTCT+AGG - chr3_1:9949019-9949038 None:intergenic 30.0%
GCTTACCTAATTGTATTACT+TGG + chr3_1:9949058-9949077 Msa0348070:intron 30.0%
! TCATTTTACAACTGTACCTA+AGG + chr3_1:9949593-9949612 Msa0348070:intron 30.0%
!!! CAAATTTTTTCGCTTCTACA+TGG - chr3_1:9949670-9949689 None:intergenic 30.0%
TTTATGTCAGCTTGCAAAAT+TGG + chr3_1:9950211-9950230 Msa0348070:intron 30.0%
TTGTGTTTGAGGAATCAAAA+AGG - chr3_1:9950264-9950283 None:intergenic 30.0%
! ATTATCACTTTGTTCTGAGT+AGG + chr3_1:9950295-9950314 Msa0348070:intron 30.0%
TAATGAGTCTAAAGGTTACA+AGG - chr3_1:9950329-9950348 None:intergenic 30.0%
GTATCAAATGTGTTCATCTT+GGG - chr3_1:9950354-9950373 None:intergenic 30.0%
ATGTCTTTAACAGATAGAGT+AGG + chr3_1:9950490-9950509 Msa0348070:intron 30.0%
!!! TGTATCAAAGATATTTTGGC+CGG - chr3_1:9950554-9950573 None:intergenic 30.0%
AAGCTACAATTCATTGAACA+TGG + chr3_1:9950688-9950707 Msa0348070:intron 30.0%
AAGAATCTTGTCAAAATCAG+TGG - chr3_1:9950748-9950767 None:intergenic 30.0%
AATGAATTCCAGTTTCTTAG+TGG + chr3_1:9950869-9950888 Msa0348070:intron 30.0%
TTGTTCCAAAGATGAAATCT+TGG - chr3_1:9950899-9950918 None:intergenic 30.0%
TAGAAGACAATAGCAATCTA+TGG - chr3_1:9951058-9951077 None:intergenic 30.0%
AAACTAAGTTGCAGATACAT+AGG + chr3_1:9951077-9951096 Msa0348070:intron 30.0%
! CAAAGTTTTTCATCCTGAAA+AGG - chr3_1:9951168-9951187 None:intergenic 30.0%
! ATCTCTGAAAGACAACAATT+AGG + chr3_1:9951193-9951212 Msa0348070:intron 30.0%
TTTAGAGAATCAGTCAAGAT+TGG - chr3_1:9951398-9951417 None:intergenic 30.0%
TAAAATCAGGTTCAGAAATC+AGG + chr3_1:9951475-9951494 Msa0348070:intron 30.0%
!! GACTATTTTAAGAGAGATAG+AGG + chr3_1:9951738-9951757 Msa0348070:intron 30.0%
!! CTATTTTAAGAGAGATAGAG+GGG + chr3_1:9951740-9951759 Msa0348070:intron 30.0%
TTTGTATAGAGTTTGTCTCT+TGG + chr3_1:9951802-9951821 Msa0348070:intron 30.0%
!! TGTTCCATACACTTTGATTT+TGG + chr3_1:9952099-9952118 Msa0348070:intron 30.0%
AAAGGATAATCAAGTACCAT+GGG + chr3_1:9952219-9952238 Msa0348070:intron 30.0%
TTTAAAGATACCATGCTCTA+TGG + chr3_1:9952707-9952726 Msa0348070:intron 30.0%
! ATGCTTTAAGTGTAACAAGA+TGG + chr3_1:9952901-9952920 Msa0348070:intron 30.0%
! TGCTTTAAGTGTAACAAGAT+GGG + chr3_1:9952902-9952921 Msa0348070:intron 30.0%
TAAGAATACTCATGATCTAC+CGG + chr3_1:9953124-9953143 Msa0348070:intron 30.0%
! CAAACTACTCAAGGAATTTT+AGG - chr3_1:9953557-9953576 None:intergenic 30.0%
CTAAAATTCCTTGAGTAGTT+TGG + chr3_1:9953555-9953574 Msa0348070:intron 30.0%
TAAAATCAGGTTCAGAAATC+AGG + chr3_1:9951475-9951494 Msa0348070:intron 30.0%
!! GACTATTTTAAGAGAGATAG+AGG + chr3_1:9951738-9951757 Msa0348070:intron 30.0%
!! CTATTTTAAGAGAGATAGAG+GGG + chr3_1:9951740-9951759 Msa0348070:intron 30.0%
TTTGTATAGAGTTTGTCTCT+TGG + chr3_1:9951802-9951821 Msa0348070:intron 30.0%
AATCCTAATAGTGTTTCCTA+AGG - chr3_1:9954131-9954150 None:intergenic 30.0%
!! TGTTCCATACACTTTGATTT+TGG + chr3_1:9952099-9952118 Msa0348070:intron 30.0%
ACTAATAACAACTTGATGTG+TGG - chr3_1:9954418-9954437 None:intergenic 30.0%
ATGTGTGATTCCATAATTCA+TGG - chr3_1:9954484-9954503 None:intergenic 30.0%
AAGATTAAAGATCTCAAGGT+AGG - chr3_1:9954839-9954858 None:intergenic 30.0%
TGATGAGTTATAAGATCACT+AGG - chr3_1:9954978-9954997 None:intergenic 30.0%
! TCATCAAACTTGGGAATTTT+AGG + chr3_1:9954992-9955011 Msa0348070:intron 30.0%
TCTTTCTCATGTTCTTCAAA+CGG - chr3_1:9955061-9955080 None:intergenic 30.0%
GAGAAAGATTGAAATGAAGA+AGG + chr3_1:9955073-9955092 Msa0348070:intron 30.0%
!!! CAAAAACACAGTTTTTTGGA+GGG - chr3_1:9955137-9955156 None:intergenic 30.0%
!!! ACAAAAACACAGTTTTTTGG+AGG - chr3_1:9955138-9955157 None:intergenic 30.0%
AATAGAATTCACCTCACAAT+TGG - chr3_1:9955205-9955224 None:intergenic 30.0%
AGTTAGTTAAACCTCTATGA+TGG - chr3_1:9955273-9955292 None:intergenic 30.0%
! GTTTAACTAACTAGCTTACT+TGG + chr3_1:9955281-9955300 Msa0348070:intron 30.0%
!!! GTGTTAGAAGTTAGTTTTAG+AGG - chr3_1:9955318-9955337 None:intergenic 30.0%
! TTTGTTCATTCAGATTAGCT+TGG + chr3_1:9955477-9955496 Msa0348070:intron 30.0%
CTGCAACAATAGAATGATAT+AGG + chr3_1:9955625-9955644 Msa0348070:intron 30.0%
!!! TTTTTTGTCCTGAATATTGC+TGG + chr3_1:9955785-9955804 Msa0348070:CDS 30.0%
TATTATTGCAGATCAATCAC+AGG + chr3_1:9955952-9955971 Msa0348070:three_prime_UTR 30.0%
!! ATAATGTGAAAGCATCAATC+TGG - chr3_1:9955979-9955998 None:intergenic 30.0%
AGATTGATGCTTTCACATTA+TGG + chr3_1:9955978-9955997 Msa0348070:three_prime_UTR 30.0%
ACAAAAAAATATTCGATGGC+AGG - chr3_1:9956020-9956039 None:intergenic 30.0%
TTATCACATACGGACAAAAT+TGG - chr3_1:9956135-9956154 None:intergenic 30.0%
ATAGATCTTCTCATTATGGG+CGG + chr3_1:9948156-9948175 Msa0348070:five_prime_UTR 35.0%
AGCTCTTCTCAAATGATCAA+TGG + chr3_1:9948514-9948533 Msa0348070:intron 35.0%
TTCTCAAATGATCAATGGTC+AGG + chr3_1:9948519-9948538 Msa0348070:intron 35.0%
AATGATCAATGGTCAGGTAT+TGG + chr3_1:9948525-9948544 Msa0348070:intron 35.0%
TAAGATTTCGCCATTCATAG+TGG + chr3_1:9948628-9948647 Msa0348070:intron 35.0%
GTTGCATTAACCACTATGAA+TGG - chr3_1:9948641-9948660 None:intergenic 35.0%
GTATGGATAACACCTACATA+AGG - chr3_1:9948712-9948731 None:intergenic 35.0%
GTAACTTTGCAAAAGAGGTA+TGG - chr3_1:9948729-9948748 None:intergenic 35.0%
GGGAAGCAATATTAATCACT+AGG - chr3_1:9948787-9948806 None:intergenic 35.0%
CACTTAGAAGATTCTTCAGA+AGG - chr3_1:9948808-9948827 None:intergenic 35.0%
GAAACTGCATCACTAATGAT+TGG - chr3_1:9948858-9948877 None:intergenic 35.0%
ACCTAATTGTATTACTTGGC+TGG + chr3_1:9949062-9949081 Msa0348070:intron 35.0%
TCCAGCCAAGTAATACAATT+AGG - chr3_1:9949066-9949085 None:intergenic 35.0%
TCTTATGCAAAATAGAGCTG+TGG + chr3_1:9949115-9949134 Msa0348070:CDS 35.0%
! AATAGAGCTGTGGTAATGTT+TGG + chr3_1:9949125-9949144 Msa0348070:intron 35.0%
TGAGGAAATTGTGGCATAAA+TGG + chr3_1:9949193-9949212 Msa0348070:intron 35.0%
! GCATAAATGGCATGTTGATT+TGG + chr3_1:9949206-9949225 Msa0348070:intron 35.0%
CAATAATCCTGAAGGCTTAT+AGG + chr3_1:9949489-9949508 Msa0348070:intron 35.0%
TCAAAGAAGAAGCCCTAATT+AGG - chr3_1:9949537-9949556 None:intergenic 35.0%
AATTAGGGCTTCTTCTTTGA+AGG + chr3_1:9949537-9949556 Msa0348070:intron 35.0%
ATTAGGGCTTCTTCTTTGAA+GGG + chr3_1:9949538-9949557 Msa0348070:intron 35.0%
GTAAGAACTTAACGTTGCAA+GGG - chr3_1:9949634-9949653 None:intergenic 35.0%
ATGAGTTTGTCTATGAGACT+AGG + chr3_1:9949869-9949888 Msa0348070:intron 35.0%
TGTTGTCAGAGAAATGTTGT+TGG - chr3_1:9949927-9949946 None:intergenic 35.0%
ACATGAGGTCTTCTTTATCT+TGG + chr3_1:9950050-9950069 Msa0348070:intron 35.0%
AGGAATCAAAAAGGTGGAAT+TGG - chr3_1:9950255-9950274 None:intergenic 35.0%
TGTTTGAGGAATCAAAAAGG+TGG - chr3_1:9950261-9950280 None:intergenic 35.0%
GGTATCAAATGTGTTCATCT+TGG - chr3_1:9950355-9950374 None:intergenic 35.0%
AGCAAGAAGCTTGATGAAAA+AGG - chr3_1:9950376-9950395 None:intergenic 35.0%
! AAATCACTCCAAGCTTGTTT+AGG + chr3_1:9950463-9950482 Msa0348070:intron 35.0%
ACTTCTGTTCAGTATTTGAG+TGG + chr3_1:9950513-9950532 Msa0348070:intron 35.0%
! TCAATGAATTGTAGCTTGCA+TGG - chr3_1:9950685-9950704 None:intergenic 35.0%
TCCAAAGATGAAATCTTGGA+AGG - chr3_1:9950895-9950914 None:intergenic 35.0%
AAGTGCTTAGATTGTGTAGT+AGG - chr3_1:9950939-9950958 None:intergenic 35.0%
TCATCAACTTATTTCAGTGC+TGG + chr3_1:9950960-9950979 Msa0348070:intron 35.0%
ATGCTCATCTCAGTTTCAAA+GGG - chr3_1:9951025-9951044 None:intergenic 35.0%
TATGCTCATCTCAGTTTCAA+AGG - chr3_1:9951026-9951045 None:intergenic 35.0%
AGATACATAGGTACAATGAC+AGG + chr3_1:9951089-9951108 Msa0348070:intron 35.0%
! AATCTGAAACTATGCTTTGG+AGG - chr3_1:9951341-9951360 None:intergenic 35.0%
! GGAAATCTGAAACTATGCTT+TGG - chr3_1:9951344-9951363 None:intergenic 35.0%
ATTCCAAGATGCATGTGATA+GGG - chr3_1:9951370-9951389 None:intergenic 35.0%
AGAAAGGCAACAACAAAACT+AGG + chr3_1:9951778-9951797 Msa0348070:intron 35.0%
GAAAGGCAACAACAAAACTA+GGG + chr3_1:9951779-9951798 Msa0348070:intron 35.0%
AATCCTAATAGTGTTTCCCA+AGG - chr3_1:9951858-9951877 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG + chr3_1:9951866-9951885 Msa0348070:intron 35.0%
TAACGCTACTCATCATATAG+TGG + chr3_1:9951956-9951975 Msa0348070:intron 35.0%
! CTACTCATCATATAGTGGAA+CGG + chr3_1:9951961-9951980 Msa0348070:intron 35.0%
!! AAGAATTTGTTGACCCAGTT+CGG - chr3_1:9952023-9952042 None:intergenic 35.0%
GAAAACAACAGCGAAAGAAA+AGG - chr3_1:9952059-9952078 None:intergenic 35.0%
!!! TCGCTGTTGTTTTCTACTTT+TGG + chr3_1:9952065-9952084 Msa0348070:intron 35.0%
GCAACCAAAATCAAAGTGTA+TGG - chr3_1:9952106-9952125 None:intergenic 35.0%
! TCCACACATCAAGTTGTTAT+TGG + chr3_1:9952141-9952160 Msa0348070:intron 35.0%
ACCAATAACAACTTGATGTG+TGG - chr3_1:9952145-9952164 None:intergenic 35.0%
CAAAGGATAATCAAGTACCA+TGG + chr3_1:9952218-9952237 Msa0348070:intron 35.0%
TGGGATATTGAGAAGTTTAC+CGG + chr3_1:9952249-9952268 Msa0348070:intron 35.0%
! TTTACCGGAGATAACGATTT+TGG + chr3_1:9952264-9952283 Msa0348070:intron 35.0%
! TTACCGGAGATAACGATTTT+GGG + chr3_1:9952265-9952284 Msa0348070:intron 35.0%
TAACCCAAAATCGTTATCTC+CGG - chr3_1:9952271-9952290 None:intergenic 35.0%
!!! GAGATAACGATTTTGGGTTA+TGG + chr3_1:9952271-9952290 Msa0348070:intron 35.0%
!!! TAACGATTTTGGGTTATGGA+AGG + chr3_1:9952275-9952294 Msa0348070:intron 35.0%
! AAAGTGTGAGAAAGCTTTGA+AGG + chr3_1:9952326-9952345 Msa0348070:intron 35.0%
!! AAGTGTGAGAAAGCTTTGAA+GGG + chr3_1:9952327-9952346 Msa0348070:intron 35.0%
!!! AGTTTTGAGAGAAGTAGCAA+AGG + chr3_1:9952443-9952462 Msa0348070:intron 35.0%
!! ATGAGTAGAGTTGTTGCTTT+AGG - chr3_1:9952542-9952561 None:intergenic 35.0%
ACAACTCTACTCATTCAAGA+TGG + chr3_1:9952548-9952567 Msa0348070:intron 35.0%
! CAACAAAATCCTTGATGACT+TGG + chr3_1:9952608-9952627 Msa0348070:intron 35.0%
CAATATTCTCCAAGTCATCA+AGG - chr3_1:9952620-9952639 None:intergenic 35.0%
! TGATGACTTGGAGAATATTG+AGG + chr3_1:9952620-9952639 Msa0348070:intron 35.0%
GAATATTGAGGTGAATCTTG+AGG + chr3_1:9952632-9952651 Msa0348070:intron 35.0%
! CTTTGACTTAATCAACTCCT+TGG - chr3_1:9952780-9952799 None:intergenic 35.0%
! CAAGGAGTTGATTAAGTCAA+AGG + chr3_1:9952778-9952797 Msa0348070:intron 35.0%
!! GACTTGAGAGTTGATGAAAA+CGG + chr3_1:9952800-9952819 Msa0348070:intron 35.0%
!! ACTTGAGAGTTGATGAAAAC+GGG + chr3_1:9952801-9952820 Msa0348070:intron 35.0%
AAGATGATGTTTCTCACCTT+GGG + chr3_1:9953029-9953048 Msa0348070:intron 35.0%
TTCAAGGTTGAAGACATAGT+GGG + chr3_1:9953159-9953178 Msa0348070:intron 35.0%
AAGGGATTTCTTCATGAAGA+CGG + chr3_1:9953293-9953312 Msa0348070:intron 35.0%
AGGTTGAAGAATGTATAGCA+CGG + chr3_1:9953328-9953347 Msa0348070:intron 35.0%
GAATTACCCTAAAAGTCCAA+GGG + chr3_1:9953357-9953376 Msa0348070:intron 35.0%
CAAACTACACTAGGAATTTC+AGG - chr3_1:9953461-9953480 None:intergenic 35.0%
CTGAAATTCCTAGTGTAGTT+TGG + chr3_1:9953459-9953478 Msa0348070:intron 35.0%
TTCCGATGATTGAAGAAGTT+AGG + chr3_1:9953608-9953627 Msa0348070:intron 35.0%
TCCGATGATTGAAGAAGTTA+GGG + chr3_1:9953609-9953628 Msa0348070:intron 35.0%
ACCCTAACTTCTTCAATCAT+CGG - chr3_1:9953613-9953632 None:intergenic 35.0%
!! TCATCACTGATTTGAAGTCA+AGG + chr3_1:9953703-9953722 Msa0348070:intron 35.0%
AGAAAGGCAACAACAAAACT+AGG + chr3_1:9951778-9951797 Msa0348070:intron 35.0%
GAAAGGCAACAACAAAACTA+GGG + chr3_1:9951779-9951798 Msa0348070:intron 35.0%
TCACCTTAGGAAACACTATT+AGG + chr3_1:9954125-9954144 Msa0348070:intron 35.0%
ACTATTAGGATTGAGTCTCT+TGG + chr3_1:9951866-9951885 Msa0348070:intron 35.0%
TAACGCTACTCATCATATAG+TGG + chr3_1:9951956-9951975 Msa0348070:intron 35.0%
! CTACTCATCATATAGTGGAA+CGG + chr3_1:9951961-9951980 Msa0348070:intron 35.0%
!! AAGAATTTGTTGACCCAGTT+CGG - chr3_1:9952023-9952042 None:intergenic 35.0%
GAAAACAACAGCGAAAGAAA+CGG - chr3_1:9952059-9952078 None:intergenic 35.0%
!!! TCGCTGTTGTTTTCTACTTT+TGG + chr3_1:9952065-9952084 Msa0348070:intron 35.0%
GCAACCAAAATCAAAGTGTA+TGG - chr3_1:9952106-9952125 None:intergenic 35.0%
GTAGCAATCATATGATGTTG+AGG - chr3_1:9954460-9954479 None:intergenic 35.0%
GATTGCTACACCATGAATTA+TGG + chr3_1:9954471-9954490 Msa0348070:intron 35.0%
TGTTGTAAGTGTCACAAACT+CGG - chr3_1:9954579-9954598 None:intergenic 35.0%
AAGATGTCAAAATCAGGAAG+GGG - chr3_1:9954675-9954694 None:intergenic 35.0%
GAAGATGTCAAAATCAGGAA+GGG - chr3_1:9954676-9954695 None:intergenic 35.0%
TGAAGATGTCAAAATCAGGA+AGG - chr3_1:9954677-9954696 None:intergenic 35.0%
GATCTGAAGATGTCAAAATC+AGG - chr3_1:9954681-9954700 None:intergenic 35.0%
TGATGTCATTACTCTCTGAA+TGG - chr3_1:9954772-9954791 None:intergenic 35.0%
!! TCTACAGCTTTGAATTGTTC+AGG + chr3_1:9954866-9954885 Msa0348070:intron 35.0%
! TCAAACTTGGGAATTTTAGG+TGG + chr3_1:9954995-9955014 Msa0348070:intron 35.0%
TGAATGTTTACAGACCCTTA+AGG + chr3_1:9955167-9955186 Msa0348070:intron 35.0%
GAATGTTTACAGACCCTTAA+GGG + chr3_1:9955168-9955187 Msa0348070:intron 35.0%
AATGTTTACAGACCCTTAAG+GGG + chr3_1:9955169-9955188 Msa0348070:intron 35.0%
AACACTATTAGGGTTTCATC+TGG + chr3_1:9955333-9955352 Msa0348070:intron 35.0%
!! GATTAGCTTGGTCACAAAAA+CGG + chr3_1:9955489-9955508 Msa0348070:intron 35.0%
ATTAGTTGAGCATCATACCT+GGG - chr3_1:9955532-9955551 None:intergenic 35.0%
TATTAGTTGAGCATCATACC+TGG - chr3_1:9955533-9955552 None:intergenic 35.0%
TGTTAGTGTAATTGCTGAGA+GGG - chr3_1:9955866-9955885 None:intergenic 35.0%
ATGTTAGTGTAATTGCTGAG+AGG - chr3_1:9955867-9955886 None:intergenic 35.0%
TGACGATGAATACTGTAACT+TGG - chr3_1:9956047-9956066 None:intergenic 35.0%
TCTCTGTTGTACGATCTATT+AGG + chr3_1:9956082-9956101 Msa0348070:three_prime_UTR 35.0%
ACATACGGACAAAATTGGTT+GGG - chr3_1:9956130-9956149 None:intergenic 35.0%
! ACGCTTTCTATCTGAAGTGT+CGG + chr3_1:9948031-9948050 Msa0348070:five_prime_UTR 40.0%
TTCAAACCACCTAACCTTCT+AGG - chr3_1:9948187-9948206 None:intergenic 40.0%
GGTGATGTTCTTGCAATATC+AGG + chr3_1:9948226-9948245 Msa0348070:five_prime_UTR 40.0%
AGCAAATCTTACAGGTCCAA+AGG - chr3_1:9948595-9948614 None:intergenic 40.0%
AAGGGGTAACTTTGCAAAAG+AGG - chr3_1:9948734-9948753 None:intergenic 40.0%
!! CAGAAAGCATTGCTATGAAG+GGG - chr3_1:9948751-9948770 None:intergenic 40.0%
!! CCAGAAAGCATTGCTATGAA+GGG - chr3_1:9948752-9948771 None:intergenic 40.0%
!! TCCAGAAAGCATTGCTATGA+AGG - chr3_1:9948753-9948772 None:intergenic 40.0%
GTATTACTTGGCTGGATTTC+AGG + chr3_1:9949070-9949089 Msa0348070:intron 40.0%
! TTTCAGGTGACCATAATCAC+TGG + chr3_1:9949086-9949105 Msa0348070:intron 40.0%
TTCAAAACAATTGGTCCAGC+TGG + chr3_1:9949290-9949309 Msa0348070:CDS 40.0%
GATGGAGTTCAAATCTCCTT+AGG - chr3_1:9949612-9949631 None:intergenic 40.0%
GGTAAGAACTTAACGTTGCA+AGG - chr3_1:9949635-9949654 None:intergenic 40.0%
! TCTACATGGTGTCAGCTAAA+TGG - chr3_1:9949656-9949675 None:intergenic 40.0%
GAGATCTGTTAGATAGCTGT+TGG - chr3_1:9949761-9949780 None:intergenic 40.0%
TGTCTATGAGACTAGGAAAG+AGG + chr3_1:9949876-9949895 Msa0348070:intron 40.0%
TAGGAAAGAGGAGTTTAGAG+AGG + chr3_1:9949888-9949907 Msa0348070:intron 40.0%
AAGAGGAGTTTAGAGAGGTT+TGG + chr3_1:9949893-9949912 Msa0348070:intron 40.0%
TAGTCTTTACTCCACACATG+AGG + chr3_1:9950035-9950054 Msa0348070:intron 40.0%
GATAAAGAAGACCTCATGTG+TGG - chr3_1:9950049-9950068 None:intergenic 40.0%
TGAGGTCTTCTTTATCTTGG+AGG + chr3_1:9950053-9950072 Msa0348070:intron 40.0%
GAATTGGAGTGAAAAGCGAA+AGG - chr3_1:9950239-9950258 None:intergenic 40.0%
CTTGGGAGTAATGAGTCTAA+AGG - chr3_1:9950337-9950356 None:intergenic 40.0%
! TTGGAGTGATTTGAAGTCTG+CGG - chr3_1:9950455-9950474 None:intergenic 40.0%
ACATGACACCTAAACAAGCT+TGG - chr3_1:9950474-9950493 None:intergenic 40.0%
! ATGGTGAGGAGTATGTTATC+TGG - chr3_1:9950583-9950602 None:intergenic 40.0%
ATACTCCTCACCATGTTCAT+CGG + chr3_1:9950589-9950608 Msa0348070:intron 40.0%
AGCACAATAGTGTCTCAGAA+AGG - chr3_1:9950627-9950646 None:intergenic 40.0%
! TCTGAGACACTATTGTGCTA+AGG + chr3_1:9950628-9950647 Msa0348070:intron 40.0%
! TGGTTTAGAACTGATAGAGG+TGG - chr3_1:9950728-9950747 None:intergenic 40.0%
! CAGTGGTTTAGAACTGATAG+AGG - chr3_1:9950731-9950750 None:intergenic 40.0%
ATCAATCCAGCATCAAATGC+AGG - chr3_1:9950828-9950847 None:intergenic 40.0%
TGCATTTGATGCTGGATTGA+TGG + chr3_1:9950827-9950846 Msa0348070:intron 40.0%
GCATTTGATGCTGGATTGAT+GGG + chr3_1:9950828-9950847 Msa0348070:intron 40.0%
GCCTTCCAAGATTTCATCTT+TGG + chr3_1:9950891-9950910 Msa0348070:intron 40.0%
! CTCATCACTAATCCCTTTTC+AGG + chr3_1:9951152-9951171 Msa0348070:intron 40.0%
AAGATGCATGTGATAGGGAA+GGG - chr3_1:9951365-9951384 None:intergenic 40.0%
GATTCCAAGATGCATGTGAT+AGG - chr3_1:9951371-9951390 None:intergenic 40.0%
! ATTTTTCCAGTGCTTGCATC+AGG - chr3_1:9951592-9951611 None:intergenic 40.0%
GCTGAAACAAGGGTTTAGAA+AGG + chr3_1:9951762-9951781 Msa0348070:intron 40.0%
TGTCTCTTGGCAACAAAACT+AGG + chr3_1:9951815-9951834 Msa0348070:intron 40.0%
GTCTCTTGGCAACAAAACTA+GGG + chr3_1:9951816-9951835 Msa0348070:intron 40.0%
GCAACAAAACTAGGGTTTGT+GGG + chr3_1:9951824-9951843 Msa0348070:intron 40.0%
!! TTTGTGGGTTGATTCACCTT+GGG + chr3_1:9951839-9951858 Msa0348070:intron 40.0%
TCACCTTGGGAAACACTATT+AGG + chr3_1:9951852-9951871 Msa0348070:intron 40.0%
AGGATTGAGTCTCTTGGTTA+CGG + chr3_1:9951872-9951891 Msa0348070:intron 40.0%
TGAGTAGCGTTACAAAGAGA+TGG - chr3_1:9951948-9951967 None:intergenic 40.0%
! TCATCATATAGTGGAACGGA+GGG + chr3_1:9951965-9951984 Msa0348070:intron 40.0%
CTCATCGAATCCTCAACAAT+TGG + chr3_1:9952174-9952193 Msa0348070:intron 40.0%
TGGGTTATGGAAGGTAAAGA+TGG + chr3_1:9952284-9952303 Msa0348070:intron 40.0%
CTCTCAAAACTTTATCTCCG+AGG - chr3_1:9952434-9952453 None:intergenic 40.0%
! TGACAAAGTCTTTGGCTCAT+CGG + chr3_1:9952511-9952530 Msa0348070:intron 40.0%
ACTCTACTCATTCAAGATGG+TGG + chr3_1:9952551-9952570 Msa0348070:intron 40.0%
!! ATTCAAGATGGTGGAGTCAA+AGG + chr3_1:9952560-9952579 Msa0348070:intron 40.0%
ACCATGCTCTATGGAAAAGA+AGG + chr3_1:9952716-9952735 Msa0348070:intron 40.0%
!! AAAAGAAGGCACTGTTACCT+TGG + chr3_1:9952730-9952749 Msa0348070:intron 40.0%
!! CTTGAGAGTTGATGAAAACG+GGG + chr3_1:9952802-9952821 Msa0348070:intron 40.0%
AAGGCCTAAGTGTTTCAAGA+GGG + chr3_1:9952825-9952844 Msa0348070:intron 40.0%
CATTCCCTCTTGAAACACTT+AGG - chr3_1:9952832-9952851 None:intergenic 40.0%
CTAAGTGTTTCAAGAGGGAA+TGG + chr3_1:9952830-9952849 Msa0348070:intron 40.0%
TCTTGTTACTACTCTTTCCC+CGG - chr3_1:9952871-9952890 None:intergenic 40.0%
TCACTTCAAGAAGGATTGTC+CGG + chr3_1:9952925-9952944 Msa0348070:intron 40.0%
AAGGATTGTCCGGAGATTAA+TGG + chr3_1:9952935-9952954 Msa0348070:intron 40.0%
TTCCGTACAAATTGTCTCTG+AGG + chr3_1:9952961-9952980 Msa0348070:intron 40.0%
TCCGTACAAATTGTCTCTGA+GGG + chr3_1:9952962-9952981 Msa0348070:intron 40.0%
ACCCTCAGAGACAATTTGTA+CGG - chr3_1:9952966-9952985 None:intergenic 40.0%
! AATTGTCTCTGAGGGTTATG+AGG + chr3_1:9952970-9952989 Msa0348070:intron 40.0%
GAAGATGATGTTTCTCACCT+TGG + chr3_1:9953028-9953047 Msa0348070:intron 40.0%
AGATGATGTTTCTCACCTTG+GGG + chr3_1:9953030-9953049 Msa0348070:intron 40.0%
TTAAACACTCAACATCAGCC+TGG + chr3_1:9953090-9953109 Msa0348070:intron 40.0%
GTTCAAGGTTGAAGACATAG+TGG + chr3_1:9953158-9953177 Msa0348070:intron 40.0%
! GTACTCATTTGCTAGTTGAG+AGG + chr3_1:9953184-9953203 Msa0348070:intron 40.0%
! TCATTTGCTAGTTGAGAGGT+TGG + chr3_1:9953188-9953207 Msa0348070:intron 40.0%
GATTTCTTCATGAAGACGGA+AGG + chr3_1:9953297-9953316 Msa0348070:intron 40.0%
GCTATACATTCTTCAACCTC+CGG - chr3_1:9953327-9953346 None:intergenic 40.0%
GGAATTACCCTAAAAGTCCA+AGG + chr3_1:9953356-9953375 Msa0348070:intron 40.0%
! CAATCACCCTTGGACTTTTA+GGG - chr3_1:9953366-9953385 None:intergenic 40.0%
TGTCTCGTATTGAAGAGGTA+TGG + chr3_1:9953417-9953436 Msa0348070:intron 40.0%
CCTTGTATCCAAACTACACT+AGG - chr3_1:9953470-9953489 None:intergenic 40.0%
CCTAGTGTAGTTTGGATACA+AGG + chr3_1:9953467-9953486 Msa0348070:intron 40.0%
TTGGACACAAGGATCTTCAA+AGG + chr3_1:9953574-9953593 Msa0348070:intron 40.0%
TGGACACAAGGATCTTCAAA+GGG + chr3_1:9953575-9953594 Msa0348070:intron 40.0%
GAAGTTAGGGTGTAAACTTG+TGG + chr3_1:9953622-9953641 Msa0348070:intron 40.0%
TGTAAACTTGTGGAGCTACT+TGG + chr3_1:9953632-9953651 Msa0348070:intron 40.0%
!! TCACTGATTTGAAGTCAAGG+TGG + chr3_1:9953706-9953725 Msa0348070:intron 40.0%
! ATTTTTCCAGTGCTTGCATC+AGG - chr3_1:9951592-9951611 None:intergenic 40.0%
GCTGAAACAAGGGTTTAGAA+AGG + chr3_1:9951762-9951781 Msa0348070:intron 40.0%
TGTCTCTTGGCAACAAAACT+AGG + chr3_1:9951815-9951834 Msa0348070:intron 40.0%
GTCTCTTGGCAACAAAACTA+GGG + chr3_1:9951816-9951835 Msa0348070:intron 40.0%
GCAACAAAACTAGGGTTTGT+GGG + chr3_1:9951824-9951843 Msa0348070:intron 40.0%
!! TTTGTGGGTTGATTCACCTT+AGG + chr3_1:9951839-9951858 Msa0348070:intron 40.0%
AGGATTGAGTCTCTTGGTTA+CGG + chr3_1:9951872-9951891 Msa0348070:intron 40.0%
! TCATCATATAGTGGAACGGA+GGG + chr3_1:9951965-9951984 Msa0348070:intron 40.0%
GTTGTAAGTGTCACAAACTC+GGG - chr3_1:9954578-9954597 None:intergenic 40.0%
TCAAAATCAGGAAGGGGTTA+TGG - chr3_1:9954669-9954688 None:intergenic 40.0%
GAACTGCAAAGCAGTTTACT+TGG - chr3_1:9954747-9954766 None:intergenic 40.0%
TTCTATAGAGCACACCACAT+AGG + chr3_1:9954800-9954819 Msa0348070:intron 40.0%
GACATCAAGATTCACCTATG+TGG - chr3_1:9954817-9954836 None:intergenic 40.0%
AGATCACTAGGCAGAATTCA+TGG - chr3_1:9954966-9954985 None:intergenic 40.0%
CGGATTTGAAGATTCAGCTA+TGG - chr3_1:9955041-9955060 None:intergenic 40.0%
ATGTTTACAGACCCTTAAGG+GGG + chr3_1:9955170-9955189 Msa0348070:intron 40.0%
TTCACCTCACAATTGGTATC+AGG - chr3_1:9955198-9955217 None:intergenic 40.0%
ATAGCACTAGTCCATCATAG+AGG + chr3_1:9955259-9955278 Msa0348070:intron 40.0%
TTTGTCCTGAATATTGCTGG+AGG + chr3_1:9955788-9955807 Msa0348070:CDS 40.0%
!! CTCACCCTTTTTCTCTAAAG+AGG - chr3_1:9955929-9955948 None:intergenic 40.0%
! CTCTTTAGAGAAAAAGGGTG+AGG + chr3_1:9955927-9955946 Msa0348070:three_prime_UTR 40.0%
TACGATCTATTAGGTGCACA+AGG + chr3_1:9956091-9956110 Msa0348070:three_prime_UTR 40.0%
CACATACGGACAAAATTGGT+TGG - chr3_1:9956131-9956150 None:intergenic 40.0%
CTTGGGCATCTTATCACATA+CGG - chr3_1:9956145-9956164 None:intergenic 40.0%
AGACTACGAACATGTGATAC+GGG - chr3_1:9956169-9956188 None:intergenic 40.0%
CAGACTACGAACATGTGATA+CGG - chr3_1:9956170-9956189 None:intergenic 40.0%
!! ATGATGGGTATAGGGAAAGC+TGG - chr3_1:9948563-9948582 None:intergenic 45.0%
GAGATGCGAGCAAATCTTAC+AGG - chr3_1:9948603-9948622 None:intergenic 45.0%
! GTAAGATTTGCTCGCATCTC+CGG + chr3_1:9948603-9948622 Msa0348070:five_prime_UTR 45.0%
! TAAGATTTGCTCGCATCTCC+GGG + chr3_1:9948604-9948623 Msa0348070:five_prime_UTR 45.0%
TGAATGGCGAAATCTTACCC+CGG - chr3_1:9948625-9948644 None:intergenic 45.0%
CCCTTCATAGCAATGCTTTC+TGG + chr3_1:9948749-9948768 Msa0348070:exon 45.0%
AGGCAGAATGAATCGCAAGA+TGG - chr3_1:9948941-9948960 None:intergenic 45.0%
TCGCATATGAGTGATAAGCG+AGG - chr3_1:9948978-9948997 None:intergenic 45.0%
TCGCTTATCACTCATATGCG+AGG + chr3_1:9948977-9948996 Msa0348070:intron 45.0%
!! GGCATGTTGATTTGGAGAAC+AGG + chr3_1:9949214-9949233 Msa0348070:intron 45.0%
GAACAGGAACAACGTCAAAG+AGG + chr3_1:9949230-9949249 Msa0348070:intron 45.0%
GCTAATGGCATTGCTATGAC+TGG + chr3_1:9949257-9949276 Msa0348070:CDS 45.0%
AAAACAATTGGTCCAGCTGG+AGG + chr3_1:9949293-9949312 Msa0348070:CDS 45.0%
GAACTTAACGTTGCAAGGGA+TGG - chr3_1:9949630-9949649 None:intergenic 45.0%
CAGCAGAGATGTTGTGTTTG+AGG - chr3_1:9950275-9950294 None:intergenic 45.0%
TACTCCTCACCATGTTCATC+GGG + chr3_1:9950590-9950609 Msa0348070:intron 45.0%
GAATAGAACCCCGATGAACA+TGG - chr3_1:9950602-9950621 None:intergenic 45.0%
ATGCTTCCTGCATTTGATGC+TGG + chr3_1:9950819-9950838 Msa0348070:intron 45.0%
TTGGAAGGCCACTAAGAAAC+TGG - chr3_1:9950880-9950899 None:intergenic 45.0%
CAAGATGCATGTGATAGGGA+AGG - chr3_1:9951366-9951385 None:intergenic 45.0%
CTTCCCTATCACATGCATCT+TGG + chr3_1:9951364-9951383 Msa0348070:intron 45.0%
AGATAGAGGGGCTGAAACAA+GGG + chr3_1:9951752-9951771 Msa0348070:intron 45.0%
GGCAACAAAACTAGGGTTTG+TGG + chr3_1:9951823-9951842 Msa0348070:intron 45.0%
!! GTTTGTGGGTTGATTCACCT+TGG + chr3_1:9951838-9951857 Msa0348070:intron 45.0%
GGATTGAGTCTCTTGGTTAC+GGG + chr3_1:9951873-9951892 Msa0348070:intron 45.0%
GCTGGGATTTGGGTAGAATT+AGG + chr3_1:9951901-9951920 Msa0348070:intron 45.0%
GGGATTTGGGTAGAATTAGG+CGG + chr3_1:9951904-9951923 Msa0348070:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG + chr3_1:9951905-9951924 Msa0348070:intron 45.0%
! CTCATCATATAGTGGAACGG+AGG + chr3_1:9951964-9951983 Msa0348070:intron 45.0%
TCCAAATTGACCTAGTCTGG+GGG - chr3_1:9952000-9952019 None:intergenic 45.0%
GTCCAAATTGACCTAGTCTG+GGG - chr3_1:9952001-9952020 None:intergenic 45.0%
GGTCCAAATTGACCTAGTCT+GGG - chr3_1:9952002-9952021 None:intergenic 45.0%
TAGGTCAATTTGGACCGAAC+TGG + chr3_1:9952006-9952025 Msa0348070:intron 45.0%
AGGTCAATTTGGACCGAACT+GGG + chr3_1:9952007-9952026 Msa0348070:intron 45.0%
AAGTACCATGGGTTCGAAGT+GGG + chr3_1:9952230-9952249 Msa0348070:intron 45.0%
AATATCCCACTTCGAACCCA+TGG - chr3_1:9952238-9952257 None:intergenic 45.0%
!! GAGAAAGCTTTGAAGGGTGA+AGG + chr3_1:9952333-9952352 Msa0348070:intron 45.0%
! AGTGTCATTGTCTTGTGCCT+CGG + chr3_1:9952414-9952433 Msa0348070:intron 45.0%
! GCCTTCTTTTCCATAGAGCA+TGG - chr3_1:9952720-9952739 None:intergenic 45.0%
AGCTGCTTGAACTTCTTCCA+AGG - chr3_1:9952750-9952769 None:intergenic 45.0%
!! TCAAGCAGCTTTGAGAACCA+AGG + chr3_1:9952760-9952779 Msa0348070:intron 45.0%
!! AGAGTTGATGAAAACGGGGA+AGG + chr3_1:9952806-9952825 Msa0348070:intron 45.0%
GAAGGCCTAAGTGTTTCAAG+AGG + chr3_1:9952824-9952843 Msa0348070:intron 45.0%
AGTGTTTCAAGAGGGAATGG+TGG + chr3_1:9952833-9952852 Msa0348070:intron 45.0%
CAAGATGGGTCACTTCAAGA+AGG + chr3_1:9952916-9952935 Msa0348070:intron 45.0%
TGAGGATGCATGTGCTTTGA+TGG + chr3_1:9952988-9953007 Msa0348070:intron 45.0%
!! TGCTTTGATGGTGTGCTGTT+TGG + chr3_1:9953000-9953019 Msa0348070:intron 45.0%
!! TTTGATGGTGTGCTGTTTGG+AGG + chr3_1:9953003-9953022 Msa0348070:intron 45.0%
GATGATGTTTCTCACCTTGG+GGG + chr3_1:9953031-9953050 Msa0348070:intron 45.0%
! TACTCATGATCTACCGGTTG+AGG + chr3_1:9953130-9953149 Msa0348070:intron 45.0%
TTAGGTGGAGTTGAACACAC+CGG + chr3_1:9953221-9953240 Msa0348070:intron 45.0%
TATGCTCTAGTGGTGAGCAA+GGG + chr3_1:9953275-9953294 Msa0348070:intron 45.0%
AGAATGTATAGCACGGCTTG+TGG + chr3_1:9953335-9953354 Msa0348070:intron 45.0%
! CCAATCACCCTTGGACTTTT+AGG - chr3_1:9953367-9953386 None:intergenic 45.0%
CCTAAAAGTCCAAGGGTGAT+TGG + chr3_1:9953364-9953383 Msa0348070:intron 45.0%
TGGATGCAAGGTGATCTTCA+AGG + chr3_1:9953384-9953403 Msa0348070:intron 45.0%
CAAGGTGATCTTCAAGGAAG+CGG + chr3_1:9953390-9953409 Msa0348070:intron 45.0%
AAGGTGATCTTCAAGGAAGC+GGG + chr3_1:9953391-9953410 Msa0348070:intron 45.0%
GGAGATGTCTCGTATTGAAG+AGG + chr3_1:9953412-9953431 Msa0348070:intron 45.0%
GGATACAAGGATCTTCGAGA+AGG + chr3_1:9953480-9953499 Msa0348070:intron 45.0%
TACAAGGATCTTCGAGAAGG+CGG + chr3_1:9953483-9953502 Msa0348070:intron 45.0%
ACCTTAACCTCTTCAGCCAT+CGG - chr3_1:9953517-9953536 None:intergenic 45.0%
GAGGTTAAGGTGTGTACTTG+TGG + chr3_1:9953526-9953545 Msa0348070:intron 45.0%
CCTTGTGTCCAAACTACTCA+AGG - chr3_1:9953566-9953585 None:intergenic 45.0%
CCTTGAGTAGTTTGGACACA+AGG + chr3_1:9953563-9953582 Msa0348070:intron 45.0%
GGACACAAGGATCTTCAAAG+GGG + chr3_1:9953576-9953595 Msa0348070:intron 45.0%
!! TACTTGGTGTAGTGGGAACA+AGG + chr3_1:9953648-9953667 Msa0348070:intron 45.0%
!! ACTTGGTGTAGTGGGAACAA+GGG + chr3_1:9953649-9953668 Msa0348070:intron 45.0%
AGATAGAGGGGCTGAAACAA+GGG + chr3_1:9951752-9951771 Msa0348070:intron 45.0%
GGCAACAAAACTAGGGTTTG+TGG + chr3_1:9951823-9951842 Msa0348070:intron 45.0%
GGATTGAGTCTCTTGGTTAC+GGG + chr3_1:9951873-9951892 Msa0348070:intron 45.0%
GCTGGGATTTGGGTAGAATT+AGG + chr3_1:9951901-9951920 Msa0348070:intron 45.0%
GGGATTTGGGTAGAATTAGG+CGG + chr3_1:9951904-9951923 Msa0348070:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG + chr3_1:9951905-9951924 Msa0348070:intron 45.0%
! CTCATCATATAGTGGAACGG+AGG + chr3_1:9951964-9951983 Msa0348070:intron 45.0%
TCCAAATTGACCTAGTCTGG+GGG - chr3_1:9952000-9952019 None:intergenic 45.0%
GTCCAAATTGACCTAGTCTG+GGG - chr3_1:9952001-9952020 None:intergenic 45.0%
GGTCCAAATTGACCTAGTCT+GGG - chr3_1:9952002-9952021 None:intergenic 45.0%
TAGGTCAATTTGGACCGAAC+TGG + chr3_1:9952006-9952025 Msa0348070:intron 45.0%
AGGTCAATTTGGACCGAACT+GGG + chr3_1:9952007-9952026 Msa0348070:intron 45.0%
GGGCACTATCAGAATGAATG+TGG - chr3_1:9954558-9954577 None:intergenic 45.0%
GGATGTTGAAGAGGATGTAC+TGG - chr3_1:9954648-9954667 None:intergenic 45.0%
AGGGGTTATGGATGTTGAAG+AGG - chr3_1:9954657-9954676 None:intergenic 45.0%
TGTTCAGGAGTTGCATCTGA+TGG + chr3_1:9954881-9954900 Msa0348070:intron 45.0%
!! ATCAAAGGAGTACTGCGGAT+TGG - chr3_1:9954930-9954949 None:intergenic 45.0%
!! TTGCGATCAAAGGAGTACTG+CGG - chr3_1:9954935-9954954 None:intergenic 45.0%
GGAGAAACTGTTGCGATCAA+AGG - chr3_1:9954945-9954964 None:intergenic 45.0%
ATGAATGCATCTTTCCTCCC+AGG + chr3_1:9955512-9955531 Msa0348070:CDS 45.0%
CATAACTGCAGGCACTCATA+TGG + chr3_1:9955760-9955779 Msa0348070:intron 45.0%
CAAGTCCTCCAGCAATATTC+AGG - chr3_1:9955796-9955815 None:intergenic 45.0%
CTGAATATTGCTGGAGGACT+TGG + chr3_1:9955794-9955813 Msa0348070:CDS 45.0%
ACGGACAAAATTGGTTGGGA+GGG - chr3_1:9956126-9956145 None:intergenic 45.0%
TACGGACAAAATTGGTTGGG+AGG - chr3_1:9956127-9956146 None:intergenic 45.0%
GAACATGTGATACGGGACTT+GGG - chr3_1:9956162-9956181 None:intergenic 45.0%
GTGAGTCCTAGAAGGTTAGG+TGG + chr3_1:9948178-9948197 Msa0348070:five_prime_UTR 50.0%
! AAGATTTGCTCGCATCTCCG+GGG + chr3_1:9948605-9948624 Msa0348070:five_prime_UTR 50.0%
TGATAAGCGAGGCTCCAGAT+CGG - chr3_1:9948967-9948986 None:intergenic 50.0%
CGTCAAAGAGGAGCAGCTAA+TGG + chr3_1:9949242-9949261 Msa0348070:CDS 50.0%
GTCTAGGCCTATAAGCCTTC+AGG - chr3_1:9949499-9949518 None:intergenic 50.0%
! AGCTTCTTGCTCTGAGCATC+TGG + chr3_1:9950385-9950404 Msa0348070:intron 50.0%
ACTCCTCACCATGTTCATCG+GGG + chr3_1:9950591-9950610 Msa0348070:intron 50.0%
GATCTGCTTTCAACCCATCG+TGG - chr3_1:9951570-9951589 None:intergenic 50.0%
CTGGAAAAATCGTGCCACGA+TGG + chr3_1:9951602-9951621 Msa0348070:intron 50.0%
GAGATAGAGGGGCTGAAACA+AGG + chr3_1:9951751-9951770 Msa0348070:intron 50.0%
AGTCTCTTGGTTACGGGAAG+AGG + chr3_1:9951879-9951898 Msa0348070:intron 50.0%
TCCCCCAGACTAGGTCAATT+TGG + chr3_1:9951996-9952015 Msa0348070:intron 50.0%
CGGTCCAAATTGACCTAGTC+TGG - chr3_1:9952003-9952022 None:intergenic 50.0%
CAAGTACCATGGGTTCGAAG+TGG + chr3_1:9952229-9952248 Msa0348070:intron 50.0%
GAAGGGTGAAGGTTCGTTAC+CGG + chr3_1:9952344-9952363 Msa0348070:intron 50.0%
GCACAAGACAATGACACTCC+TGG - chr3_1:9952412-9952431 None:intergenic 50.0%
AGTAGCAAAGGAACCAACCG+CGG + chr3_1:9952455-9952474 Msa0348070:intron 50.0%
GGCCATCATGGAGCAACTTA+CGG + chr3_1:9952581-9952600 Msa0348070:intron 50.0%
CTCCGTAAGTTGCTCCATGA+TGG - chr3_1:9952586-9952605 None:intergenic 50.0%
GTTTCAAGAGGGAATGGTGG+AGG + chr3_1:9952836-9952855 Msa0348070:intron 50.0%
! ATGGTGGAGGTAGAGGTAAC+CGG + chr3_1:9952849-9952868 Msa0348070:intron 50.0%
! TCATGATCTACCGGTTGAGG+TGG + chr3_1:9953133-9953152 Msa0348070:intron 50.0%
GAGGTTGGAAGCTCAGCTTT+AGG + chr3_1:9953203-9953222 Msa0348070:intron 50.0%
!! GTTGGAAGCTCAGCTTTAGG+TGG + chr3_1:9953206-9953225 Msa0348070:intron 50.0%
TAGGTGGAGTTGAACACACC+GGG + chr3_1:9953222-9953241 Msa0348070:intron 50.0%
GTACGACTATGGAGGACCTT+GGG + chr3_1:9953249-9953268 Msa0348070:intron 50.0%
CTATGCTCTAGTGGTGAGCA+AGG + chr3_1:9953274-9953293 Msa0348070:intron 50.0%
!! CATGAAGACGGAAGGCATTC+CGG + chr3_1:9953305-9953324 Msa0348070:intron 50.0%
TCCAAGGGTGATTGGATGCA+AGG + chr3_1:9953372-9953391 Msa0348070:intron 50.0%
ACCTTGCATCCAATCACCCT+TGG - chr3_1:9953376-9953395 None:intergenic 50.0%
AGACATTCCGATGGCTGAAG+AGG + chr3_1:9953507-9953526 Msa0348070:intron 50.0%
TCCGATGGCTGAAGAGGTTA+AGG + chr3_1:9953513-9953532 Msa0348070:intron 50.0%
CACAAGGATCTTCAAAGGGG+CGG + chr3_1:9953579-9953598 Msa0348070:intron 50.0%
!! TGTGGAGCTACTTGGTGTAG+TGG + chr3_1:9953640-9953659 Msa0348070:intron 50.0%
!! GTGGAGCTACTTGGTGTAGT+GGG + chr3_1:9953641-9953660 Msa0348070:intron 50.0%
GAACAAGGGAAAGAGCAGCA+AGG + chr3_1:9953663-9953682 Msa0348070:intron 50.0%
AAGAGCAGCAAGGTGGTTGA+TGG + chr3_1:9953673-9953692 Msa0348070:intron 50.0%
!! CAGCAAGGTGGTTGATGGTT+TGG + chr3_1:9953678-9953697 Msa0348070:intron 50.0%
GATCTGCTTTCAACCCATCG+TGG - chr3_1:9951570-9951589 None:intergenic 50.0%
CTGGAAAAATCGTGCCACGA+TGG + chr3_1:9951602-9951621 Msa0348070:intron 50.0%
GGAATCGTAACGTGGCACTA+TGG + chr3_1:9953896-9953915 Msa0348070:intron 50.0%
GAGATAGAGGGGCTGAAACA+AGG + chr3_1:9951751-9951770 Msa0348070:intron 50.0%
AGTCTCTTGGTTACGGGAAG+AGG + chr3_1:9951879-9951898 Msa0348070:intron 50.0%
TCCCCCAGACTAGGTCAATT+TGG + chr3_1:9951996-9952015 Msa0348070:intron 50.0%
CGGTCCAAATTGACCTAGTC+TGG - chr3_1:9952003-9952022 None:intergenic 50.0%
! GAGGATGTACTGGTGCTAGT+GGG - chr3_1:9954638-9954657 None:intergenic 50.0%
! AGAGGATGTACTGGTGCTAG+TGG - chr3_1:9954639-9954658 None:intergenic 50.0%
!! AAAGGAGTACTGCGGATTGG+TGG - chr3_1:9954927-9954946 None:intergenic 50.0%
GGCTCCTGATACCAATTGTG+AGG + chr3_1:9955191-9955210 Msa0348070:intron 50.0%
AGTTGAGCATCATACCTGGG+AGG - chr3_1:9955529-9955548 None:intergenic 50.0%
ACAGCGAGCTTCAGGAATTC+AGG - chr3_1:9955736-9955755 None:intergenic 50.0%
TATGCACAACAGCGAGCTTC+AGG - chr3_1:9955744-9955763 None:intergenic 50.0%
TCGCTGTTGTGCATAACTGC+AGG + chr3_1:9955749-9955768 Msa0348070:intron 50.0%
CGAACATGTGATACGGGACT+TGG - chr3_1:9956163-9956182 None:intergenic 50.0%
TATGGGCGGTGAGTCCTAGA+AGG + chr3_1:9948170-9948189 Msa0348070:five_prime_UTR 55.0%
GCGGTGAGTCCTAGAAGGTT+AGG + chr3_1:9948175-9948194 Msa0348070:five_prime_UTR 55.0%
TCATTCTGCCTCCACCGATC+TGG + chr3_1:9948950-9948969 Msa0348070:intron 55.0%
ACAATTGGTCCAGCTGGAGG+TGG + chr3_1:9949296-9949315 Msa0348070:CDS 55.0%
TTGGCCGGAAGCTGTTGTGT+GGG - chr3_1:9950539-9950558 None:intergenic 55.0%
TTTGGCCGGAAGCTGTTGTG+TGG - chr3_1:9950540-9950559 None:intergenic 55.0%
GAACCCCGATGAACATGGTG+AGG - chr3_1:9950597-9950616 None:intergenic 55.0%
TGGCACGTTGCTTCTGATCG+TGG - chr3_1:9951510-9951529 None:intergenic 55.0%
TCAGAAGCAACGTGCCACGA+TGG + chr3_1:9951513-9951532 Msa0348070:intron 55.0%
TGGCACGTTGCTATCCATCG+TGG - chr3_1:9951550-9951569 None:intergenic 55.0%
TGGATAGCAACGTGCCACGA+TGG + chr3_1:9951553-9951572 Msa0348070:intron 55.0%
GGATAGCAACGTGCCACGAT+GGG + chr3_1:9951554-9951573 Msa0348070:intron 55.0%
GCAGATCCTGATGCAAGCAC+TGG + chr3_1:9951583-9951602 Msa0348070:intron 55.0%
GCCACGATGGAATCGTAACG+TGG + chr3_1:9951615-9951634 Msa0348070:intron 55.0%
GCCACGTTACGATTCCATCG+TGG - chr3_1:9951619-9951638 None:intergenic 55.0%
GGAATCGTAACGTGGCACGA+TGG + chr3_1:9951623-9951642 Msa0348070:intron 55.0%
TCTTGGTTACGGGAAGAGGC+TGG + chr3_1:9951883-9951902 Msa0348070:intron 55.0%
CTTGGTTACGGGAAGAGGCT+GGG + chr3_1:9951884-9951903 Msa0348070:intron 55.0%
TACGGGAAGAGGCTGGGATT+TGG + chr3_1:9951890-9951909 Msa0348070:intron 55.0%
ACGGGAAGAGGCTGGGATTT+GGG + chr3_1:9951891-9951910 Msa0348070:intron 55.0%
ATCCTTTGACCCTTGCCCCA+CGG - chr3_1:9952206-9952225 None:intergenic 55.0%
!! GAAGACCGAGATGGTGGACA+AGG + chr3_1:9952386-9952405 Msa0348070:intron 55.0%
!! GGCATCGATGTGGGCAAAGT+TGG + chr3_1:9952476-9952495 Msa0348070:intron 55.0%
GGTGGAGTCAAAGGCCATCA+TGG + chr3_1:9952569-9952588 Msa0348070:intron 55.0%
! AGAGGGAATGGTGGAGGTAG+AGG + chr3_1:9952842-9952861 Msa0348070:intron 55.0%
TGGTGGAGGTAGAGGTAACC+GGG + chr3_1:9952850-9952869 Msa0348070:intron 55.0%
CACTCAACATCAGCCTGGAG+AGG + chr3_1:9953095-9953114 Msa0348070:intron 55.0%
TCAACATCAGCCTGGAGAGG+CGG + chr3_1:9953098-9953117 Msa0348070:intron 55.0%
ATTCTTACCACCGCCTCTCC+AGG - chr3_1:9953111-9953130 None:intergenic 55.0%
! TGATCTACCGGTTGAGGTGG+AGG + chr3_1:9953136-9953155 Msa0348070:intron 55.0%
CCTTGAACCTCCACCTCAAC+CGG - chr3_1:9953146-9953165 None:intergenic 55.0%
CTCCATAGTCGTACCACTCC+CGG - chr3_1:9953243-9953262 None:intergenic 55.0%
GGTACGACTATGGAGGACCT+TGG + chr3_1:9953248-9953267 Msa0348070:intron 55.0%
CCACTAGAGCATAGCACCCA+AGG - chr3_1:9953268-9953287 None:intergenic 55.0%
! CCTTGGGTGCTATGCTCTAG+TGG + chr3_1:9953265-9953284 Msa0348070:intron 55.0%
GAAGGCGGAAGACATTCCGA+TGG + chr3_1:9953498-9953517 Msa0348070:intron 55.0%
AGGATCTTCAAAGGGGCGGA+AGG + chr3_1:9953583-9953602 Msa0348070:intron 55.0%
CAAGGGAAAGAGCAGCAAGG+TGG + chr3_1:9953666-9953685 Msa0348070:intron 55.0%
TGGCACGTTGCTTCTGATCG+TGG - chr3_1:9951510-9951529 None:intergenic 55.0%
TCAGAAGCAACGTGCCACGA+TGG + chr3_1:9951513-9951532 Msa0348070:intron 55.0%
TGGCACGTTGCTATCCATCG+TGG - chr3_1:9951550-9951569 None:intergenic 55.0%
TGGATAGCAACGTGCCACGA+TGG + chr3_1:9951553-9951572 Msa0348070:intron 55.0%
GGATAGCAACGTGCCACGAT+GGG + chr3_1:9951554-9951573 Msa0348070:intron 55.0%
GCAGATCCTGATGCAAGCAC+TGG + chr3_1:9951583-9951602 Msa0348070:intron 55.0%
GCCACGATGGAATCGTAACG+TGG + chr3_1:9951615-9951634 Msa0348070:intron 55.0%
GCCACGTTACGATTCCATCG+TGG - chr3_1:9951619-9951638 None:intergenic 55.0%
GTGGCACTATGGTACGCTGA+AGG + chr3_1:9953907-9953926 Msa0348070:intron 55.0%
TCTTGGTTACGGGAAGAGGC+TGG + chr3_1:9951883-9951902 Msa0348070:intron 55.0%
CTTGGTTACGGGAAGAGGCT+GGG + chr3_1:9951884-9951903 Msa0348070:intron 55.0%
TACGGGAAGAGGCTGGGATT+TGG + chr3_1:9951890-9951909 Msa0348070:intron 55.0%
ACGGGAAGAGGCTGGGATTT+GGG + chr3_1:9951891-9951910 Msa0348070:intron 55.0%
GGTGGAGACTGGAATCACTG+CGG - chr3_1:9954909-9954928 None:intergenic 55.0%
!! TACTGCGGATTGGTGGAGAC+TGG - chr3_1:9954920-9954939 None:intergenic 55.0%
GGTATCAGGAGCCCCCTTAA+GGG - chr3_1:9955184-9955203 None:intergenic 55.0%
TGGTATCAGGAGCCCCCTTA+AGG - chr3_1:9955185-9955204 None:intergenic 55.0%
TAAGCGAGGCTCCAGATCGG+TGG - chr3_1:9948964-9948983 None:intergenic 60.0%
GTGGCCCACACAACAGCTTC+CGG + chr3_1:9950532-9950551 Msa0348070:intron 60.0%
TGGCACGTTGCTCTCCATCG+TGG - chr3_1:9951530-9951549 None:intergenic 60.0%
TGGAGAGCAACGTGCCACGA+TGG + chr3_1:9951533-9951552 Msa0348070:intron 60.0%
GTGGCACGATGGTACGCTGA+AGG + chr3_1:9951634-9951653 Msa0348070:intron 60.0%
ACGGTGGGCGCCAATTGTTG+AGG - chr3_1:9952187-9952206 None:intergenic 60.0%
TCAACAATTGGCGCCCACCG+TGG + chr3_1:9952186-9952205 Msa0348070:intron 60.0%
CAACAATTGGCGCCCACCGT+GGG + chr3_1:9952187-9952206 Msa0348070:intron 60.0%
AACAATTGGCGCCCACCGTG+GGG + chr3_1:9952188-9952207 Msa0348070:intron 60.0%
TTTGACCCTTGCCCCACGGT+GGG - chr3_1:9952202-9952221 None:intergenic 60.0%
ACCGGTCACCATGACACGAG+CGG + chr3_1:9952362-9952381 Msa0348070:intron 60.0%
TCCGCTCGTGTCATGGTGAC+CGG - chr3_1:9952366-9952385 None:intergenic 60.0%
GGTCTTCTCCGCTCGTGTCA+TGG - chr3_1:9952373-9952392 None:intergenic 60.0%
ACGAGCGGAGAAGACCGAGA+TGG + chr3_1:9952377-9952396 Msa0348070:intron 60.0%
AGCGGAGAAGACCGAGATGG+TGG + chr3_1:9952380-9952399 Msa0348070:intron 60.0%
!! CCTGGCCTTGTCCACCATCT+CGG - chr3_1:9952394-9952413 None:intergenic 60.0%
!! AACCAACCGCGGCATCGATG+TGG + chr3_1:9952466-9952485 Msa0348070:intron 60.0%
!! ACCAACCGCGGCATCGATGT+GGG + chr3_1:9952467-9952486 Msa0348070:intron 60.0%
CTTTGCCCACATCGATGCCG+CGG - chr3_1:9952475-9952494 None:intergenic 60.0%
GGTGGAGGTAGAGGTAACCG+GGG + chr3_1:9952851-9952870 Msa0348070:intron 60.0%
TCTACCAGGCATCACCCCCA+AGG - chr3_1:9953048-9953067 None:intergenic 60.0%
CCGGTTGAGGTGGAGGTTCA+AGG + chr3_1:9953143-9953162 Msa0348070:intron 60.0%
GGAGTTGAACACACCGGGAG+TGG + chr3_1:9953227-9953246 Msa0348070:intron 60.0%
CACCGGGAGTGGTACGACTA+TGG + chr3_1:9953238-9953257 Msa0348070:intron 60.0%
CGGGAGTGGTACGACTATGG+AGG + chr3_1:9953241-9953260 Msa0348070:intron 60.0%
!! GAAGACGGAAGGCATTCCGG+AGG + chr3_1:9953308-9953327 Msa0348070:intron 60.0%
TGGCACGTTGCTCTCCATCG+TGG - chr3_1:9951530-9951549 None:intergenic 60.0%
TGGAGAGCAACGTGCCACGA+TGG + chr3_1:9951533-9951552 Msa0348070:intron 60.0%
! TGTACTGGTGCTAGTGGGCG+TGG - chr3_1:9954633-9954652 None:intergenic 60.0%
CACACTGCACCACCTCCAGC+TGG - chr3_1:9949308-9949327 None:intergenic 65.0%
GCTGCTCTCTCCCCCAGACT+AGG + chr3_1:9951987-9952006 Msa0348070:intron 65.0%
CTTTGACCCTTGCCCCACGG+TGG - chr3_1:9952203-9952222 None:intergenic 65.0%
CACCGTGGGGCAAGGGTCAA+AGG + chr3_1:9952201-9952220 Msa0348070:intron 65.0%
!! CCGAGATGGTGGACAAGGCC+AGG + chr3_1:9952391-9952410 Msa0348070:intron 65.0%
CTCACCTTGGGGGTGATGCC+TGG + chr3_1:9953041-9953060 Msa0348070:intron 65.0%
GGGGGTGATGCCTGGTAGAG+CGG + chr3_1:9953049-9953068 Msa0348070:intron 65.0%
GGTGATGCCTGGTAGAGCGG+TGG + chr3_1:9953052-9953071 Msa0348070:intron 65.0%
CAGACGACCACCGCTCTACC+AGG - chr3_1:9953062-9953081 None:intergenic 65.0%
CTGGTAGAGCGGTGGTCGTC+TGG + chr3_1:9953060-9953079 Msa0348070:intron 65.0%
ACATCAGCCTGGAGAGGCGG+TGG + chr3_1:9953101-9953120 Msa0348070:intron 65.0%
GCTGCTCTCTCCCCCAGACT+AGG + chr3_1:9951987-9952006 Msa0348070:intron 65.0%
GCGAGGCTCCAGATCGGTGG+AGG - chr3_1:9948961-9948980 None:intergenic 70.0%
GCCCACATCGATGCCGCGGT+TGG - chr3_1:9952471-9952490 None:intergenic 70.0%
TTGGCGCCCACCGTGGGGCA+AGG + chr3_1:9952193-9952212 Msa0348070:intron 75.0%
TGGCGCCCACCGTGGGGCAA+GGG + chr3_1:9952194-9952213 Msa0348070:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 9947959 9956191 9947959 ID=Msa0348070;Name=Msa0348070
chr3_1 mRNA 9947959 9956191 9947959 ID=Msa0348070-mRNA-1;Parent=Msa0348070;Name=Msa0348070-mRNA-1;_AED=0.38;_eAED=0.38;_QI=417|1|1|1|0.66|0.57|7|308|118
chr3_1 exon 9947959 9948247 9947959 ID=Msa0348070-mRNA-1:exon:2793;Parent=Msa0348070-mRNA-1
chr3_1 exon 9948541 9948626 9948541 ID=Msa0348070-mRNA-1:exon:2794;Parent=Msa0348070-mRNA-1
chr3_1 exon 9948719 9948826 9948719 ID=Msa0348070-mRNA-1:exon:2795;Parent=Msa0348070-mRNA-1
chr3_1 exon 9949092 9949136 9949092 ID=Msa0348070-mRNA-1:exon:2796;Parent=Msa0348070-mRNA-1
chr3_1 exon 9949236 9949324 9949236 ID=Msa0348070-mRNA-1:exon:2797;Parent=Msa0348070-mRNA-1
chr3_1 exon 9955490 9955533 9955490 ID=Msa0348070-mRNA-1:exon:2798;Parent=Msa0348070-mRNA-1
chr3_1 exon 9955771 9956191 9955771 ID=Msa0348070-mRNA-1:exon:2799;Parent=Msa0348070-mRNA-1
chr3_1 five_prime_UTR 9947959 9948247 9947959 ID=Msa0348070-mRNA-1:five_prime_utr;Parent=Msa0348070-mRNA-1
chr3_1 five_prime_UTR 9948541 9948626 9948541 ID=Msa0348070-mRNA-1:five_prime_utr;Parent=Msa0348070-mRNA-1
chr3_1 five_prime_UTR 9948719 9948760 9948719 ID=Msa0348070-mRNA-1:five_prime_utr;Parent=Msa0348070-mRNA-1
chr3_1 CDS 9948761 9948826 9948761 ID=Msa0348070-mRNA-1:cds;Parent=Msa0348070-mRNA-1
chr3_1 CDS 9949092 9949136 9949092 ID=Msa0348070-mRNA-1:cds;Parent=Msa0348070-mRNA-1
chr3_1 CDS 9949236 9949324 9949236 ID=Msa0348070-mRNA-1:cds;Parent=Msa0348070-mRNA-1
chr3_1 CDS 9955490 9955533 9955490 ID=Msa0348070-mRNA-1:cds;Parent=Msa0348070-mRNA-1
chr3_1 CDS 9955771 9955883 9955771 ID=Msa0348070-mRNA-1:cds;Parent=Msa0348070-mRNA-1
chr3_1 three_prime_UTR 9955884 9956191 9955884 ID=Msa0348070-mRNA-1:three_prime_utr;Parent=Msa0348070-mRNA-1
Gene Sequence

>Msa0348070

ATGCTTTCTGGAATCACACTATACCTAGTGATTAATATTGCTTCCCTTCTGAAGAATCTTCTAAGTGTGACCATAATCACTGGTTTATTTCTTATGCAAAATAGAGCTGTGGAACAACGTCAAAGAGGAGCAGCTAATGGCATTGCTATGACTGGAATGTCAATATTCAAAACAATTGGTCCAGCTGGAGGTGGTGCAGTATTAGCTTGGTCACAAAAACGGATGAATGCATCTTTCCTCCCAGGCACTCATATGGTCTTTTTTGTCCTGAATATTGCTGGAGGACTTGGAGTTCTATTGATGTTTACTCCATTTTTGACTGAAAAGAAGAAAACACCCTCTCAGCAATTACACTAA
Protein sequence

>Msa0348070

MLSGITLYLVINIASLLKNLLSVTIITGLFLMQNRAVEQRQRGAANGIAMTGMSIFKTIGPAGGGAVLAWSQKRMNASFLPGTHMVFFVLNIAGGLGVLLMFTPFLTEKKKTPSQQLH*