Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443240 | AES68671.1 | 97.802 | 91 | 2 | 0 | 1 | 91 | 50 | 140 | 1.42e-56 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443240 | G7IVT7 | 97.802 | 91 | 2 | 0 | 1 | 91 | 50 | 140 | 6.77e-57 | 181 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0395770 | Msa0443240 | 0.845749 | 3.343899e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443240 | MtrunA17_Chr3g0081641 | 97.802 | 91 | 2 | 0 | 1 | 91 | 1 | 91 | 1.60e-60 | 179 |
| Msa0443240 | MtrunA17_Chr1g0173721 | 75.000 | 92 | 12 | 3 | 1 | 91 | 1 | 82 | 2.51e-41 | 130 |
| Msa0443240 | MtrunA17_Chr5g0404111 | 39.394 | 66 | 38 | 2 | 1 | 64 | 14 | 79 | 5.20e-13 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443240 | AT4G39235.2 | 64.835 | 91 | 27 | 1 | 1 | 91 | 1 | 86 | 6.83e-36 | 117 |
| Msa0443240 | AT4G39235.1 | 64.835 | 91 | 27 | 1 | 1 | 91 | 1 | 86 | 6.83e-36 | 117 |
| Msa0443240 | AT3G05570.1 | 63.043 | 92 | 31 | 2 | 1 | 91 | 1 | 90 | 1.08e-34 | 114 |
| Msa0443240 | AT2G21640.1 | 50.538 | 93 | 42 | 3 | 1 | 89 | 10 | 102 | 4.94e-23 | 85.1 |
Find 42 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCCTATTTACTCTAATT+TGG | 0.068688 | 3_3:-13883557 | None:intergenic |
| CGTGAGAGAGTAGCATATTT+TGG | 0.183030 | 3_3:-13883522 | Msa0443240:five_prime_UTR |
| CGAGTTTATTCATGCTTCTA+TGG | 0.253989 | 3_3:-13880968 | Msa0443240:CDS |
| TTGCCTATTTACTCTAATTT+GGG | 0.301009 | 3_3:-13883556 | Msa0443240:five_prime_UTR |
| TTGGATCTATTTCAGATGTT+TGG | 0.301015 | 3_3:-13880829 | Msa0443240:intron |
| TTTCCCAAATTAGAGTAAAT+AGG | 0.303855 | 3_3:+13883553 | None:intergenic |
| CGAGAGTTGTTTATGAATGA+TGG | 0.375718 | 3_3:+13883436 | None:intergenic |
| GCATGAAGAAGCCTCATTCT+TGG | 0.389977 | 3_3:-13881013 | Msa0443240:CDS |
| TTCAACTTCTTTCGTAGCCT+TGG | 0.399403 | 3_3:+13880777 | None:intergenic |
| GGCCGACGATGAACTCCGGC+TGG | 0.409676 | 3_3:+13883385 | None:intergenic |
| AGCTATGTTATTACTGTTTG+TGG | 0.415073 | 3_3:+13880610 | None:intergenic |
| TGTTTAACCGAGTCATGTAT+TGG | 0.415747 | 3_3:-13880696 | Msa0443240:three_prime_UTR |
| GTCCAACCCACTTTACTTTG+AGG | 0.419685 | 3_3:-13883460 | Msa0443240:five_prime_UTR |
| CTTCTTCTTTCGACAAGAAG+TGG | 0.455215 | 3_3:+13881035 | None:intergenic |
| GTTTGGTTTGTCCAAGGTAG+TGG | 0.458713 | 3_3:-13880812 | Msa0443240:CDS |
| CTTTCAGAAAACAATTAAGA+AGG | 0.462199 | 3_3:-13880929 | Msa0443240:intron |
| TTTCCGGTGAGTTGAGTTGA+AGG | 0.494159 | 3_3:+13883410 | None:intergenic |
| ATATAAAAGTAGGTACGAGC+AGG | 0.494703 | 3_3:+13880584 | None:intergenic |
| GTATTAAGACAATGTATCTC+AGG | 0.498600 | 3_3:+13880657 | None:intergenic |
| TGTATAAAGATGTCTGTTTG+TGG | 0.516291 | 3_3:+13880633 | None:intergenic |
| GAGAGTTGTTTATGAATGAT+GGG | 0.533641 | 3_3:+13883437 | None:intergenic |
| CTCATTCTTGGAGGATGTGA+AGG | 0.535627 | 3_3:-13881001 | Msa0443240:CDS |
| CTTCACATCCTCCAAGAATG+AGG | 0.544616 | 3_3:+13881002 | None:intergenic |
| GCAACAGCAGCTGATGAAGT+TGG | 0.545155 | 3_3:+13881057 | None:intergenic |
| TGATGGGCCTCAAAGTAAAG+TGG | 0.551751 | 3_3:+13883453 | None:intergenic |
| TACTCTAATTTGGGAAACTG+TGG | 0.555312 | 3_3:-13883547 | Msa0443240:five_prime_UTR |
| CATGACTCGGTTAAACATAG+TGG | 0.555451 | 3_3:+13880702 | None:intergenic |
| GTTCGCTTCAGCCACTACCT+TGG | 0.562123 | 3_3:+13880801 | None:intergenic |
| GGCCTCAAAGTAAAGTGGGT+TGG | 0.562419 | 3_3:+13883458 | None:intergenic |
| TGAAGAAGCCTCATTCTTGG+AGG | 0.565258 | 3_3:-13881010 | Msa0443240:CDS |
| TCAGATGTTTGGTTTGTCCA+AGG | 0.567621 | 3_3:-13880818 | Msa0443240:intron |
| GCCGACGATGAACTCCGGCT+GGG | 0.591358 | 3_3:+13883386 | None:intergenic |
| GGGGTGTTGGAAAAGTTACT+CGG | 0.594023 | 3_3:-13883501 | Msa0443240:five_prime_UTR |
| AAACAGCGAAAACTCCGTCC+AGG | 0.606658 | 3_3:-13883357 | Msa0443240:intron |
| AACTCACCGGAAAACCCAGC+CGG | 0.606982 | 3_3:-13883400 | Msa0443240:five_prime_UTR |
| ACCCAGCCGGAGTTCATCGT+CGG | 0.612988 | 3_3:-13883387 | Msa0443240:five_prime_UTR |
| TCGCCTTCAACTCAACTCAC+CGG | 0.627100 | 3_3:-13883413 | Msa0443240:five_prime_UTR |
| TATAAAAGTAGGTACGAGCA+GGG | 0.632335 | 3_3:+13880585 | None:intergenic |
| GATGGGCCTCAAAGTAAAGT+GGG | 0.634783 | 3_3:+13883454 | None:intergenic |
| TGGTGGCCGACGATGAACTC+CGG | 0.639753 | 3_3:+13883381 | None:intergenic |
| AGTGGCTGAAGCGAACTCCA+AGG | 0.641621 | 3_3:-13880794 | Msa0443240:CDS |
| AATGTGTCCAATACATGACT+CGG | 0.646526 | 3_3:+13880689 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAATGTAGAAATATTA+TGG | - | chr3_3:13880931-13880950 | Msa0443240:CDS | 10.0% |
| !!! | ATTAGAATTATTTTTTGAAT+TGG | - | chr3_3:13880958-13880977 | Msa0443240:CDS | 10.0% |
| !! | TCTACATTAAATTATCAAAA+CGG | + | chr3_3:13880924-13880943 | None:intergenic | 15.0% |
| !!! | ATGAAATTTTTGCAAAATTT+TGG | - | chr3_3:13881446-13881465 | Msa0443240:intron | 15.0% |
| !! | TTCTTTATAAATAAACTATG+CGG | + | chr3_3:13882206-13882225 | None:intergenic | 15.0% |
| !!! | ATTACTAAATTTTACAAGTT+TGG | + | chr3_3:13882338-13882357 | None:intergenic | 15.0% |
| !! | TTAGAATATTTAAAAGCAAA+AGG | + | chr3_3:13882712-13882731 | None:intergenic | 15.0% |
| !!! | GTTATTGCATTTTAATATTT+TGG | - | chr3_3:13882912-13882931 | Msa0443240:intron | 15.0% |
| !! | AGTTAAACATTAGTATATAT+CGG | + | chr3_3:13882977-13882996 | None:intergenic | 15.0% |
| !!! | ACAAATTTACTCTTTTAAAA+CGG | + | chr3_3:13883416-13883435 | None:intergenic | 15.0% |
| !!! | ATCTTGTTTAGGTTATTTAT+TGG | - | chr3_3:13881022-13881041 | Msa0443240:CDS | 20.0% |
| !!! | GATTTTAACCATGAAAATTT+TGG | - | chr3_3:13881891-13881910 | Msa0443240:intron | 20.0% |
| !!! | AACAAAATCCAAAATTTTCA+TGG | + | chr3_3:13881902-13881921 | None:intergenic | 20.0% |
| !! | TGAAATAACAATTGATATGA+CGG | + | chr3_3:13882529-13882548 | None:intergenic | 20.0% |
| !!! | AAAAGGTCAACATTTTTTTA+AGG | + | chr3_3:13882695-13882714 | None:intergenic | 20.0% |
| ! | TTTCCCAAATTAGAGTAAAT+AGG | + | chr3_3:13880598-13880617 | None:intergenic | 25.0% |
| !! | AATTGAGGATTATCTTGTTT+AGG | - | chr3_3:13881011-13881030 | Msa0443240:CDS | 25.0% |
| !! | GTTTAGGTTATTTATTGGTT+TGG | - | chr3_3:13881027-13881046 | Msa0443240:CDS | 25.0% |
| ! | AATGTACATGGCTTAATAAT+AGG | - | chr3_3:13881508-13881527 | Msa0443240:intron | 25.0% |
| !! | ATGCATGTTTTTCATTTGTA+TGG | + | chr3_3:13881842-13881861 | None:intergenic | 25.0% |
| !!! | AATTTAGTGTGAGTTGTTTT+TGG | - | chr3_3:13881924-13881943 | Msa0443240:intron | 25.0% |
| !!! | TGAGTTGTTTTTGGAAATTA+AGG | - | chr3_3:13881933-13881952 | Msa0443240:intron | 25.0% |
| ! | AAAAGATAAAGCATGCAATA+AGG | + | chr3_3:13882145-13882164 | None:intergenic | 25.0% |
| ! | ATAAATAAACTATGCGGATT+TGG | + | chr3_3:13882200-13882219 | None:intergenic | 25.0% |
| !!! | CTATATTTTGAAGCATTATG+CGG | - | chr3_3:13882242-13882261 | Msa0443240:intron | 25.0% |
| ! | ACCTTATTAGTCAATGAAAT+CGG | - | chr3_3:13882561-13882580 | Msa0443240:intron | 25.0% |
| ! | AAATTTCTATCATCAAGTAG+TGG | + | chr3_3:13882650-13882669 | None:intergenic | 25.0% |
| !!! | AACATTTTTTTAAGGACAGA+TGG | + | chr3_3:13882687-13882706 | None:intergenic | 25.0% |
| !!! | TAACTTTTGAGTATTACGTA+TGG | - | chr3_3:13882800-13882819 | Msa0443240:intron | 25.0% |
| !!! | AACTTTTGAGTATTACGTAT+GGG | - | chr3_3:13882801-13882820 | Msa0443240:intron | 25.0% |
| ! | CATGAAAATCTAAATGACAT+TGG | + | chr3_3:13882848-13882867 | None:intergenic | 25.0% |
| !! | TTGATGATAATTGAGACTTA+TGG | - | chr3_3:13883004-13883023 | Msa0443240:intron | 25.0% |
| ! | TGATGATAATTGAGACTTAT+GGG | - | chr3_3:13883005-13883024 | Msa0443240:intron | 25.0% |
| ! | CTTTCAGAAAACAATTAAGA+AGG | - | chr3_3:13883219-13883238 | Msa0443240:intron | 25.0% |
| ! | TAAATTTAACAGGATAGCTT+TGG | + | chr3_3:13883258-13883277 | None:intergenic | 25.0% |
| GAGAGTTGTTTATGAATGAT+GGG | + | chr3_3:13880714-13880733 | None:intergenic | 30.0% | |
| GAAGCGAAATTAGAAAAAGA+AGG | + | chr3_3:13880821-13880840 | None:intergenic | 30.0% | |
| ATATTTATTCTTTCCAGTGG+CGG | + | chr3_3:13880901-13880920 | None:intergenic | 30.0% | |
| ! | GATTGCACAATTTGAAATTG+AGG | - | chr3_3:13880996-13881015 | Msa0443240:CDS | 30.0% |
| ATGCAATTTGGCATGAAATA+TGG | - | chr3_3:13881231-13881250 | Msa0443240:intron | 30.0% | |
| CATGAAATATGGTCAAATAG+TGG | - | chr3_3:13881242-13881261 | Msa0443240:intron | 30.0% | |
| GTTAAAACACTTCTTTGCTA+CGG | + | chr3_3:13881369-13881388 | None:intergenic | 30.0% | |
| TTGTTTCGAGATAATGTACA+TGG | - | chr3_3:13881496-13881515 | Msa0443240:intron | 30.0% | |
| AAATATCACGCTATTATGCA+AGG | + | chr3_3:13881598-13881617 | None:intergenic | 30.0% | |
| !! | TGATATTTTTGTTCTAGTGG+AGG | - | chr3_3:13881610-13881629 | Msa0443240:intron | 30.0% |
| TGCTATGCAATTGTTAAATC+AGG | - | chr3_3:13881655-13881674 | Msa0443240:intron | 30.0% | |
| AAACGTATTCTCTGCATATT+TGG | - | chr3_3:13881775-13881794 | Msa0443240:intron | 30.0% | |
| CATTTGTATGGCTCAAAAAA+TGG | + | chr3_3:13881830-13881849 | None:intergenic | 30.0% | |
| !! | TTCTTTTGAAAGCTTGCATT+AGG | - | chr3_3:13881869-13881888 | Msa0443240:intron | 30.0% |
| GTTGTGTATATGTCTTTATC+TGG | - | chr3_3:13881960-13881979 | Msa0443240:intron | 30.0% | |
| !! | TATTTTTGTCGCTCATTGAA+TGG | - | chr3_3:13882005-13882024 | Msa0443240:intron | 30.0% |
| TACATTGCAAGACTAATTAC+AGG | + | chr3_3:13882043-13882062 | None:intergenic | 30.0% | |
| ATGCTTCAAAATATAGTTGC+AGG | + | chr3_3:13882238-13882257 | None:intergenic | 30.0% | |
| TTCAATTTCCAATGCACTTT+AGG | - | chr3_3:13882267-13882286 | Msa0443240:intron | 30.0% | |
| ATATATCACCTAAAGTGCAT+TGG | + | chr3_3:13882278-13882297 | None:intergenic | 30.0% | |
| TATGAACTTTAGCTGTTCTA+AGG | + | chr3_3:13882400-13882419 | None:intergenic | 30.0% | |
| AATACAAGCACAAAAATCTC+TGG | + | chr3_3:13882454-13882473 | None:intergenic | 30.0% | |
| ! | AGATTTTTGTGCTTGTATTG+TGG | - | chr3_3:13882455-13882474 | Msa0443240:intron | 30.0% |
| TTGTCTGAATTCGGTTATAA+TGG | - | chr3_3:13882603-13882622 | Msa0443240:intron | 30.0% | |
| TATTCTAATTCTTTACCTGC+AGG | - | chr3_3:13882724-13882743 | Msa0443240:intron | 30.0% | |
| ATTCTAATTCTTTACCTGCA+GGG | - | chr3_3:13882725-13882744 | Msa0443240:intron | 30.0% | |
| AATCTAAATGACATTGGCAA+TGG | + | chr3_3:13882842-13882861 | None:intergenic | 30.0% | |
| !! | ATTTAAGTTGTTCTAGTGAG+AGG | + | chr3_3:13882885-13882904 | None:intergenic | 30.0% |
| !! | CTTAATTGTTTTCTGAAAGC+AGG | + | chr3_3:13883218-13883237 | None:intergenic | 30.0% |
| GTGGTGCAAATAAATTTAAC+AGG | + | chr3_3:13883268-13883287 | None:intergenic | 30.0% | |
| TTGGATCTATTTCAGATGTT+TGG | - | chr3_3:13883319-13883338 | Msa0443240:intron | 30.0% | |
| GTATTAAGACAATGTATCTC+AGG | + | chr3_3:13883494-13883513 | None:intergenic | 30.0% | |
| TGTATAAAGATGTCTGTTTG+TGG | + | chr3_3:13883518-13883537 | None:intergenic | 30.0% | |
| AGCTATGTTATTACTGTTTG+TGG | + | chr3_3:13883541-13883560 | None:intergenic | 30.0% | |
| TACTCTAATTTGGGAAACTG+TGG | - | chr3_3:13880601-13880620 | Msa0443240:three_prime_UTR | 35.0% | |
| ! | GTGAGAGAGTAGCATATTTT+GGG | - | chr3_3:13880627-13880646 | Msa0443240:three_prime_UTR | 35.0% |
| ! | TGAGAGAGTAGCATATTTTG+GGG | - | chr3_3:13880628-13880647 | Msa0443240:three_prime_UTR | 35.0% |
| CGAGAGTTGTTTATGAATGA+TGG | + | chr3_3:13880715-13880734 | None:intergenic | 35.0% | |
| TTAGAAAAAGAAGGCAAACC+TGG | + | chr3_3:13880812-13880831 | None:intergenic | 35.0% | |
| CGGATATTTATTCTTTCCAG+TGG | + | chr3_3:13880904-13880923 | None:intergenic | 35.0% | |
| AAGACACTGTTGACAAACAA+CGG | - | chr3_3:13881092-13881111 | Msa0443240:exon | 35.0% | |
| !! | CTGGCGTTTTGTTAAAATTC+CGG | + | chr3_3:13881200-13881219 | None:intergenic | 35.0% |
| ACGCGATTTAGTATAAAGTG+TGG | - | chr3_3:13881313-13881332 | Msa0443240:intron | 35.0% | |
| ! | TACCAGTTTTCTTCCTAACT+TGG | - | chr3_3:13881565-13881584 | Msa0443240:intron | 35.0% |
| ATCCAAGTTAGGAAGAAAAC+TGG | + | chr3_3:13881570-13881589 | None:intergenic | 35.0% | |
| !! | GCGTGATATTTTTGTTCTAG+TGG | - | chr3_3:13881607-13881626 | Msa0443240:intron | 35.0% |
| ! | GCCGATTTCATTGACTAATA+AGG | + | chr3_3:13882565-13882584 | None:intergenic | 35.0% |
| CCGAATTCAGACAAAAGATA+GGG | + | chr3_3:13882597-13882616 | None:intergenic | 35.0% | |
| ! | CCCTATCTTTTGTCTGAATT+CGG | - | chr3_3:13882594-13882613 | Msa0443240:intron | 35.0% |
| ACCGAATTCAGACAAAAGAT+AGG | + | chr3_3:13882598-13882617 | None:intergenic | 35.0% | |
| TCTGAATTCGGTTATAATGG+AGG | - | chr3_3:13882606-13882625 | Msa0443240:intron | 35.0% | |
| TTTCTATCATCAAGTAGTGG+AGG | + | chr3_3:13882647-13882666 | None:intergenic | 35.0% | |
| !! | CTTATGGGCATAACTTGTTA+CGG | - | chr3_3:13883020-13883039 | Msa0443240:intron | 35.0% |
| CGAGTTTATTCATGCTTCTA+TGG | - | chr3_3:13883180-13883199 | Msa0443240:intron | 35.0% | |
| TCAGCAAATGACAAAGAATG+TGG | + | chr3_3:13883287-13883306 | None:intergenic | 35.0% | |
| ! | TGTCATTTGCTGATATAGTG+TGG | - | chr3_3:13883294-13883313 | Msa0443240:intron | 35.0% |
| ! | TTGCTGATATAGTGTGGTTT+TGG | - | chr3_3:13883300-13883319 | Msa0443240:intron | 35.0% |
| !!! | TCTTTTAAAACGGTCTGAAG+AGG | + | chr3_3:13883406-13883425 | None:intergenic | 35.0% |
| TGTTTAACCGAGTCATGTAT+TGG | - | chr3_3:13883452-13883471 | Msa0443240:five_prime_UTR | 35.0% | |
| AATGTGTCCAATACATGACT+CGG | + | chr3_3:13883462-13883481 | None:intergenic | 35.0% | |
| ! | CGTGAGAGAGTAGCATATTT+TGG | - | chr3_3:13880626-13880645 | Msa0443240:three_prime_UTR | 40.0% |
| !!! | AGTAGCATATTTTGGGGTGT+TGG | - | chr3_3:13880634-13880653 | Msa0443240:three_prime_UTR | 40.0% |
| AAAAAGAAGGCAAACCTGGA+CGG | + | chr3_3:13880808-13880827 | None:intergenic | 40.0% | |
| AGACACTGTTGACAAACAAC+GGG | - | chr3_3:13881093-13881112 | Msa0443240:exon | 40.0% | |
| AATTGCATGTCGCAAAACAC+TGG | + | chr3_3:13881219-13881238 | None:intergenic | 40.0% | |
| ! | GTGTTTTGCGACATGCAATT+TGG | - | chr3_3:13881219-13881238 | Msa0443240:intron | 40.0% |
| GCAAGGAAAAGATCCAAGTT+AGG | + | chr3_3:13881581-13881600 | None:intergenic | 40.0% | |
| GAGAATACGTTTGTCGTTGT+AGG | + | chr3_3:13881767-13881786 | None:intergenic | 40.0% | |
| !! | TGGCATGTGTTCTAGACTTT+TGG | - | chr3_3:13881795-13881814 | Msa0443240:intron | 40.0% |
| !! | GCTCATTGAATGGATTGCTT+CGG | - | chr3_3:13882015-13882034 | Msa0443240:intron | 40.0% |
| !! | CTCATTGAATGGATTGCTTC+GGG | - | chr3_3:13882016-13882035 | Msa0443240:intron | 40.0% |
| !! | TTTCAGTGTTTCTAGAGACG+TGG | - | chr3_3:13882100-13882119 | Msa0443240:intron | 40.0% |
| ATTCAGACAAAAGATAGGGC+CGG | + | chr3_3:13882593-13882612 | None:intergenic | 40.0% | |
| !! | GCATAACTTGTTACGGCTAT+TGG | - | chr3_3:13883027-13883046 | Msa0443240:intron | 40.0% |
| !!! | ATGAAGTTGGCTTTTCAGCT+TGG | + | chr3_3:13883081-13883100 | None:intergenic | 40.0% |
| CTTCTTCTTTCGACAAGAAG+TGG | + | chr3_3:13883116-13883135 | None:intergenic | 40.0% | |
| !! | TCAGATGTTTGGTTTGTCCA+AGG | - | chr3_3:13883330-13883349 | Msa0443240:intron | 40.0% |
| TTCAACTTCTTTCGTAGCCT+TGG | + | chr3_3:13883374-13883393 | None:intergenic | 40.0% | |
| !! | CATGACTCGGTTAAACATAG+TGG | + | chr3_3:13883449-13883468 | None:intergenic | 40.0% |
| !! | GGGGTGTTGGAAAAGTTACT+CGG | - | chr3_3:13880647-13880666 | Msa0443240:three_prime_UTR | 45.0% |
| GTCCAACCCACTTTACTTTG+AGG | - | chr3_3:13880688-13880707 | Msa0443240:three_prime_UTR | 45.0% | |
| GATGGGCCTCAAAGTAAAGT+GGG | + | chr3_3:13880697-13880716 | None:intergenic | 45.0% | |
| ! | TGATGGGCCTCAAAGTAAAG+TGG | + | chr3_3:13880698-13880717 | None:intergenic | 45.0% |
| !! | TTTCCGGTGAGTTGAGTTGA+AGG | + | chr3_3:13880741-13880760 | None:intergenic | 45.0% |
| TGTTGACAAACAACGGGTAC+AGG | - | chr3_3:13881099-13881118 | Msa0443240:intron | 45.0% | |
| ACTATTGCGCTGTAGCATAC+CGG | - | chr3_3:13881178-13881197 | Msa0443240:intron | 45.0% | |
| CCATCGAGCATCACTGAAAA+TGG | + | chr3_3:13881398-13881417 | None:intergenic | 45.0% | |
| ! | CCATTTTCAGTGATGCTCGA+TGG | - | chr3_3:13881395-13881414 | Msa0443240:intron | 45.0% |
| TCAATGAAATCGGCACAAGC+CGG | - | chr3_3:13882571-13882590 | Msa0443240:intron | 45.0% | |
| AAGTTGTTCTAGTGAGAGGC+AGG | + | chr3_3:13882881-13882900 | None:intergenic | 45.0% | |
| GCTATTGGAACCTCAGATCA+TGG | - | chr3_3:13883042-13883061 | Msa0443240:intron | 45.0% | |
| TTCTGAGTGTCCATGATCTG+AGG | + | chr3_3:13883055-13883074 | None:intergenic | 45.0% | |
| GCATGAAGAAGCCTCATTCT+TGG | - | chr3_3:13883135-13883154 | Msa0443240:intron | 45.0% | |
| TGAAGAAGCCTCATTCTTGG+AGG | - | chr3_3:13883138-13883157 | Msa0443240:intron | 45.0% | |
| CTTCACATCCTCCAAGAATG+AGG | + | chr3_3:13883149-13883168 | None:intergenic | 45.0% | |
| CTCATTCTTGGAGGATGTGA+AGG | - | chr3_3:13883147-13883166 | Msa0443240:intron | 45.0% | |
| !! | GTTTGGTTTGTCCAAGGTAG+TGG | - | chr3_3:13883336-13883355 | Msa0443240:intron | 45.0% |
| GGCCTCAAAGTAAAGTGGGT+TGG | + | chr3_3:13880693-13880712 | None:intergenic | 50.0% | |
| TCGCCTTCAACTCAACTCAC+CGG | - | chr3_3:13880735-13880754 | Msa0443240:exon | 50.0% | |
| ! | GGAGTTTTCGCTGTTTGTGG+TGG | + | chr3_3:13880787-13880806 | None:intergenic | 50.0% |
| ! | GACGGAGTTTTCGCTGTTTG+TGG | + | chr3_3:13880790-13880809 | None:intergenic | 50.0% |
| AAACAGCGAAAACTCCGTCC+AGG | - | chr3_3:13880791-13880810 | Msa0443240:CDS | 50.0% | |
| TCGGGCGTGTTACAGGAAAA+GGG | + | chr3_3:13880843-13880862 | None:intergenic | 50.0% | |
| ATCGGGCGTGTTACAGGAAA+AGG | + | chr3_3:13880844-13880863 | None:intergenic | 50.0% | |
| TCGCGCTTGAATCGGATCAT+CGG | + | chr3_3:13880862-13880881 | None:intergenic | 50.0% | |
| TCCGATTCAAGCGCGATTTG+CGG | - | chr3_3:13880866-13880885 | Msa0443240:intron | 50.0% | |
| TGACAAACAACGGGTACAGG+CGG | - | chr3_3:13881102-13881121 | Msa0443240:intron | 50.0% | |
| !! | TGATGCTCGATGGACTACAC+TGG | - | chr3_3:13881405-13881424 | Msa0443240:intron | 50.0% |
| ! | CGGTTATAATGGAGGCCACA+AGG | - | chr3_3:13882614-13882633 | Msa0443240:intron | 50.0% |
| AGTGGAGGCTTCAATCCTTG+TGG | + | chr3_3:13882632-13882651 | None:intergenic | 50.0% | |
| AAACACAAGTCATGCCCTGC+AGG | + | chr3_3:13882742-13882761 | None:intergenic | 50.0% | |
| GCAACAGCAGCTGATGAAGT+TGG | + | chr3_3:13883094-13883113 | None:intergenic | 50.0% | |
| AACTCACCGGAAAACCCAGC+CGG | - | chr3_3:13880748-13880767 | Msa0443240:CDS | 55.0% | |
| ! | TGAACTCCGGCTGGGTTTTC+CGG | + | chr3_3:13880757-13880776 | None:intergenic | 55.0% |
| CGCGCTTGAATCGGATCATC+GGG | + | chr3_3:13880861-13880880 | None:intergenic | 55.0% | |
| GCCGCAAATCGCGCTTGAAT+CGG | + | chr3_3:13880870-13880889 | None:intergenic | 55.0% | |
| GTTCGCTTCAGCCACTACCT+TGG | + | chr3_3:13883350-13883369 | None:intergenic | 55.0% | |
| AGTGGCTGAAGCGAACTCCA+AGG | - | chr3_3:13883354-13883373 | Msa0443240:intron | 55.0% | |
| ACCCAGCCGGAGTTCATCGT+CGG | - | chr3_3:13880761-13880780 | Msa0443240:CDS | 60.0% | |
| TGGTGGCCGACGATGAACTC+CGG | + | chr3_3:13880770-13880789 | None:intergenic | 60.0% | |
| CGGATCATCGGGCGTGTTAC+AGG | + | chr3_3:13880850-13880869 | None:intergenic | 60.0% | |
| GCCGACGATGAACTCCGGCT+GGG | + | chr3_3:13880765-13880784 | None:intergenic | 65.0% | |
| GCGGCTTCGATAACCGCCAC+TGG | - | chr3_3:13880885-13880904 | Msa0443240:intron | 65.0% | |
| GGCCGACGATGAACTCCGGC+TGG | + | chr3_3:13880766-13880785 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 13880595 | 13883575 | 13880595 | ID=Msa0443240;Name=Msa0443240 |
| chr3_3 | mRNA | 13880595 | 13883575 | 13880595 | ID=Msa0443240-mRNA-1;Parent=Msa0443240;Name=Msa0443240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=221|1|1|1|0.5|0.33|3|146|91 |
| chr3_3 | exon | 13880595 | 13880836 | 13880595 | ID=Msa0443240-mRNA-1:exon:3029;Parent=Msa0443240-mRNA-1 |
| chr3_3 | exon | 13880930 | 13881112 | 13880930 | ID=Msa0443240-mRNA-1:exon:3028;Parent=Msa0443240-mRNA-1 |
| chr3_3 | exon | 13883358 | 13883575 | 13883358 | ID=Msa0443240-mRNA-1:exon:3027;Parent=Msa0443240-mRNA-1 |
| chr3_3 | five_prime_UTR | 13883358 | 13883575 | 13883358 | ID=Msa0443240-mRNA-1:five_prime_utr;Parent=Msa0443240-mRNA-1 |
| chr3_3 | five_prime_UTR | 13881110 | 13881112 | 13881110 | ID=Msa0443240-mRNA-1:five_prime_utr;Parent=Msa0443240-mRNA-1 |
| chr3_3 | CDS | 13880930 | 13881109 | 13880930 | ID=Msa0443240-mRNA-1:cds;Parent=Msa0443240-mRNA-1 |
| chr3_3 | CDS | 13880741 | 13880836 | 13880741 | ID=Msa0443240-mRNA-1:cds;Parent=Msa0443240-mRNA-1 |
| chr3_3 | three_prime_UTR | 13880595 | 13880740 | 13880595 | ID=Msa0443240-mRNA-1:three_prime_utr;Parent=Msa0443240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
