Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0443470 | XP_013458794.1 | 94.774 | 574 | 4 | 1 | 3 | 576 | 157 | 704 | 0.0 | 1105 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0443470 | sp|Q9ZVD0|SRRT_ARATH | 63.889 | 540 | 173 | 10 | 48 | 576 | 192 | 720 | 0.0 | 648 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0443470 | A0A072UU14 | 94.774 | 574 | 4 | 1 | 3 | 576 | 157 | 704 | 0.0 | 1105 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0392930 | Msa0443470 | 0.800380 | 1.481050e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0443470 | MtrunA17_Chr3g0078271 | 94.774 | 574 | 4 | 1 | 3 | 576 | 157 | 704 | 0.0 | 1105 |
Msa0443470 | MtrunA17_Chr8g0355141 | 74.403 | 586 | 108 | 11 | 3 | 576 | 209 | 764 | 0.0 | 850 |
Msa0443470 | MtrunA17_Chr8g0368211 | 64.000 | 75 | 25 | 2 | 276 | 350 | 1 | 73 | 1.85e-22 | 93.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0443470 | AT2G27100.1 | 63.889 | 540 | 173 | 10 | 48 | 576 | 192 | 720 | 0.0 | 648 |
Find 200 sgRNAs with CRISPR-Local
Find 474 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTTAGCAATGTGATATTT+TGG | 0.094846 | 3_3:-14227624 | Msa0443470:intron |
TCCAGTAACCTTCGCTTTAA+AGG | 0.144365 | 3_3:+14225483 | None:intergenic |
GCCTTTAAAGCGAAGGTTAC+TGG | 0.178081 | 3_3:-14225484 | Msa0443470:CDS |
CCGTGGCTTAACATCTATTA+AGG | 0.179953 | 3_3:-14226471 | Msa0443470:CDS |
ATATCTTCTTGTATCCTTCT+AGG | 0.180061 | 3_3:+14226626 | None:intergenic |
CGTAAGCTTGACAAGGAAAA+AGG | 0.217997 | 3_3:-14226581 | Msa0443470:CDS |
ATCTGTTTCCTCCTCTGAAT+TGG | 0.224196 | 3_3:+14226739 | None:intergenic |
ATGACAGTAACTTCTTCTTC+TGG | 0.235175 | 3_3:+14224345 | None:intergenic |
AGCAAATTGAAATTATGATT+TGG | 0.243868 | 3_3:+14223863 | None:intergenic |
TCTTCATGCCTTGCTCCTTC+TGG | 0.255229 | 3_3:+14226332 | None:intergenic |
ATTCATGGTGTAGATTATTA+TGG | 0.272200 | 3_3:-14226398 | Msa0443470:CDS |
AAGTTGCGATGCAGATGTTT+AGG | 0.279432 | 3_3:-14225133 | Msa0443470:CDS |
CTCCTCTGAATTGGGCTCAC+TGG | 0.296081 | 3_3:+14226748 | None:intergenic |
GCAAATTGAAATTATGATTT+GGG | 0.305967 | 3_3:+14223864 | None:intergenic |
AATTATGTTGGCCTTGTATC+AGG | 0.312900 | 3_3:-14223950 | Msa0443470:three_prime_UTR |
CTGGTTTGGCTCATTGAGAT+TGG | 0.315755 | 3_3:-14224297 | Msa0443470:three_prime_UTR |
TGTAATCTAGTTGTAATAAT+GGG | 0.326501 | 3_3:-14224225 | Msa0443470:three_prime_UTR |
TCTGTTTCCTCCTCTGAATT+GGG | 0.330335 | 3_3:+14226740 | None:intergenic |
CTGTAATCTAGTTGTAATAA+TGG | 0.330615 | 3_3:-14224226 | Msa0443470:three_prime_UTR |
ACATGGCAGGGGATCTAATA+AGG | 0.335645 | 3_3:-14226696 | Msa0443470:CDS |
GAAAAGTATGGTTGGAAGTA+TGG | 0.336039 | 3_3:-14226152 | Msa0443470:CDS |
ACTGGCTTGCTCTGATTTAG+TGG | 0.341815 | 3_3:+14226766 | None:intergenic |
AGTTGCGATGCAGATGTTTA+GGG | 0.344816 | 3_3:-14225132 | Msa0443470:CDS |
ACACACTTATAACATATCTT+TGG | 0.344912 | 3_3:-14226424 | Msa0443470:CDS |
TTCTAATGTTACAACATCTA+TGG | 0.354148 | 3_3:+14224179 | None:intergenic |
AACATCTATTAAGGGCTTAG+AGG | 0.355957 | 3_3:-14226462 | Msa0443470:CDS |
AACATCTGCATCGCAACTTC+TGG | 0.357957 | 3_3:+14225137 | None:intergenic |
CTCCTGGATGAATTGCTTAT+AGG | 0.362268 | 3_3:+14227547 | None:intergenic |
GCTTGTAGGTTTCACTGGTT+TGG | 0.363855 | 3_3:-14224311 | Msa0443470:exon |
GGAATTAACATCAAAATTGC+GGG | 0.376005 | 3_3:-14226042 | Msa0443470:CDS |
ACATATCTTTGGCGGATTCA+TGG | 0.376855 | 3_3:-14226413 | Msa0443470:CDS |
CTCCGCATCCGTCGGGGATC+AGG | 0.378643 | 3_3:+14225008 | None:intergenic |
CATAGACTATCGGAGCTTGT+AGG | 0.379735 | 3_3:-14224325 | Msa0443470:exon |
CCAGGTACAGGCATCAAAAC+TGG | 0.382108 | 3_3:+14225282 | None:intergenic |
TTGTTCTGTCGCTCCTATCC+TGG | 0.391046 | 3_3:+14225424 | None:intergenic |
ATTACTGTAAGTAAATTTGT+TGG | 0.391234 | 3_3:+14227145 | None:intergenic |
CGATCCCACTTAGTGGGATA+AGG | 0.392410 | 3_3:-14224023 | Msa0443470:three_prime_UTR |
TCAGGAATGACGATGCGTTC+TGG | 0.403076 | 3_3:-14225083 | Msa0443470:CDS |
TGTTGTGGATAATCAAACTA+TGG | 0.406352 | 3_3:-14223979 | Msa0443470:three_prime_UTR |
TCATGGGATGGCGAACTATC+AGG | 0.408251 | 3_3:+14225390 | None:intergenic |
TGACAGTAACTTCTTCTTCT+GGG | 0.410350 | 3_3:+14224346 | None:intergenic |
TTTATACCTATTCAGGCCTC+TGG | 0.412686 | 3_3:-14225180 | Msa0443470:intron |
GTTAATTCCAACACAAGCTC+TGG | 0.415960 | 3_3:+14226056 | None:intergenic |
GCCTGGATCCCTTGGAAGTA+AGG | 0.418306 | 3_3:-14226244 | Msa0443470:CDS |
CACTTATAACATATCTTTGG+CGG | 0.418530 | 3_3:-14226421 | Msa0443470:CDS |
AAAATTAGGGATGAAAAGTA+TGG | 0.418748 | 3_3:-14226164 | Msa0443470:CDS |
CGTGGCTTAACATCTATTAA+GGG | 0.420071 | 3_3:-14226470 | Msa0443470:CDS |
GCAGAGAAGGTTGGACAGCC+TGG | 0.420227 | 3_3:-14226261 | Msa0443470:CDS |
TAAGTACCTCCGCATCCGTC+GGG | 0.423656 | 3_3:+14225001 | None:intergenic |
AGAAGATATTCATCAGGTTC+AGG | 0.424015 | 3_3:-14226612 | Msa0443470:CDS |
CTTAGAGGGTGTTGAGCTAC+TGG | 0.424649 | 3_3:-14226447 | Msa0443470:CDS |
GGCGTTCCACCAGGAGCATC+AGG | 0.425251 | 3_3:+14225889 | None:intergenic |
GAATGAAAATGCTCGACGTT+TGG | 0.427952 | 3_3:-14226963 | Msa0443470:CDS |
AGCTAAGTCGGGGTCAGAAT+GGG | 0.431013 | 3_3:-14226306 | Msa0443470:CDS |
CTTTGCAGTCCTTACTTCCA+AGG | 0.431457 | 3_3:+14226235 | None:intergenic |
TGAAAGATGATCGTGGGAAT+CGG | 0.435042 | 3_3:-14225452 | Msa0443470:CDS |
TCCTTACTTCCAAGGGATCC+AGG | 0.438671 | 3_3:+14226243 | None:intergenic |
TGCGTTCTGGTCCTCACATA+GGG | 0.441667 | 3_3:-14225070 | Msa0443470:CDS |
ACCTGAGATTGCTGCATGAC+AGG | 0.446698 | 3_3:+14225868 | None:intergenic |
CTGTCAGTTCTGAACCTAGA+AGG | 0.448137 | 3_3:-14226640 | Msa0443470:CDS |
GTATATCATCTTCAAGCTCC+TGG | 0.449728 | 3_3:+14227531 | None:intergenic |
GGTTTCCCAACTGCCTCTCA+TGG | 0.451422 | 3_3:+14225373 | None:intergenic |
GTTTGTGGATGTCAGTGACC+TGG | 0.458850 | 3_3:-14223915 | Msa0443470:three_prime_UTR |
TCGGAGCTTGTAGGTTTCAC+TGG | 0.460462 | 3_3:-14224316 | Msa0443470:exon |
GTTGGACAGCCTGGATCCCT+TGG | 0.462251 | 3_3:-14226252 | Msa0443470:CDS |
CACTGACATCCACAAACAAT+AGG | 0.463690 | 3_3:+14223921 | None:intergenic |
CAGCTAAGTCGGGGTCAGAA+TGG | 0.467971 | 3_3:-14226307 | Msa0443470:CDS |
TTGATGCCTGTACCTGGTGC+CGG | 0.468596 | 3_3:-14225276 | Msa0443470:CDS |
TGATGCCTGTACCTGGTGCC+GGG | 0.471237 | 3_3:-14225275 | Msa0443470:intron |
CATGAAGAAACAGCTAAGTC+GGG | 0.472186 | 3_3:-14226317 | Msa0443470:CDS |
GATAGGAGCGACAGAACAAA+TGG | 0.472382 | 3_3:-14225420 | Msa0443470:CDS |
TATGATTTGTGCAGAAATCC+AGG | 0.472977 | 3_3:-14226803 | Msa0443470:intron |
GCCTGTCATGCAGCAATCTC+AGG | 0.476952 | 3_3:-14225869 | Msa0443470:intron |
GAACTGACAGGGTGAGCCTT+CGG | 0.478155 | 3_3:+14226653 | None:intergenic |
CGATTTCTCTGCTGCTCCGA+AGG | 0.478520 | 3_3:-14226669 | Msa0443470:CDS |
ATCGCAACTTCTGGTGGAGC+AGG | 0.479254 | 3_3:+14225146 | None:intergenic |
TCTCACATGCCTAAAACCTT+TGG | 0.481229 | 3_3:+14226355 | None:intergenic |
TCCCACGATCATCTTTCAAT+CGG | 0.481981 | 3_3:+14225457 | None:intergenic |
GTGGATGCAGAGTTTAAACC+TGG | 0.485312 | 3_3:+14226785 | None:intergenic |
TGTAGTGATCCTGATGCTCC+TGG | 0.490637 | 3_3:-14225898 | Msa0443470:intron |
CCATCCCATGAGAGGCAGTT+GGG | 0.495045 | 3_3:-14225378 | Msa0443470:CDS |
ATACCACTCCGCATCCTTGT+GGG | 0.495435 | 3_3:+14227326 | None:intergenic |
TCGTGGGAATCGGCGAGACC+AGG | 0.497837 | 3_3:-14225442 | Msa0443470:CDS |
CCATCTTCGTATGATCCATC+AGG | 0.498285 | 3_3:-14225101 | Msa0443470:CDS |
TTTGATTATCCACCAAAACC+TGG | 0.502490 | 3_3:+14224054 | None:intergenic |
GCATGAAGAAACAGCTAAGT+CGG | 0.504054 | 3_3:-14226318 | Msa0443470:CDS |
TATATTCCGATCCCACTTAG+TGG | 0.504498 | 3_3:-14224030 | Msa0443470:three_prime_UTR |
TTTGCAGTCCTTACTTCCAA+GGG | 0.506157 | 3_3:+14226236 | None:intergenic |
ATGCGTTCTGGTCCTCACAT+AGG | 0.506680 | 3_3:-14225071 | Msa0443470:CDS |
GGCATCAAAACTGGAGGAGG+GGG | 0.507533 | 3_3:+14225291 | None:intergenic |
CAAATCTGCATAACCGCGAT+TGG | 0.508789 | 3_3:+14228479 | None:intergenic |
TTTAGGCATGTGAGACCAGA+AGG | 0.513433 | 3_3:-14226347 | Msa0443470:CDS |
ATGCAGATGTTTAGGGATCA+AGG | 0.515375 | 3_3:-14225125 | Msa0443470:CDS |
ATCTGCATCGCAACTTCTGG+TGG | 0.515886 | 3_3:+14225140 | None:intergenic |
ACCAACCCGGCACCAGGTAC+AGG | 0.516357 | 3_3:+14225270 | None:intergenic |
GTTATGCAGATTTGCCAAGT+GGG | 0.524038 | 3_3:-14228470 | Msa0443470:CDS |
TGCATGACAGGCGTTCCACC+AGG | 0.524219 | 3_3:+14225880 | None:intergenic |
GATACAAGAAGATATTCATC+AGG | 0.525306 | 3_3:-14226618 | Msa0443470:CDS |
TGGAATTAACATCAAAATTG+CGG | 0.525419 | 3_3:-14226043 | Msa0443470:CDS |
CTTGTGAATTATTTCAGAGA+GGG | 0.526093 | 3_3:-14227578 | Msa0443470:CDS |
CCCAACTGCCTCTCATGGGA+TGG | 0.526209 | 3_3:+14225378 | None:intergenic |
TATACTCTGACTTGTACTCT+TGG | 0.527237 | 3_3:+14227379 | None:intergenic |
GAAACAATGTTCGATGCATA+TGG | 0.530275 | 3_3:-14225345 | Msa0443470:CDS |
TTGGCTCATTGAGATTGGAT+TGG | 0.531912 | 3_3:-14224292 | Msa0443470:three_prime_UTR |
TCTGGTGGAGCAGGAACAAA+GGG | 0.532051 | 3_3:+14225155 | None:intergenic |
TTCCCGAGCAAAATGCTACC+TGG | 0.532763 | 3_3:-14224153 | Msa0443470:three_prime_UTR |
TTAGGGATGAAAAGTATGGT+TGG | 0.532966 | 3_3:-14226160 | Msa0443470:CDS |
CTTCTAGGTTCAGAACTGAC+AGG | 0.537567 | 3_3:+14226641 | None:intergenic |
TAAGGCTCGCAGTGGATCTG+TGG | 0.539326 | 3_3:-14226510 | Msa0443470:CDS |
ACAACTAATCTCTTCAATGA+AGG | 0.542635 | 3_3:-14228359 | Msa0443470:intron |
AAGCCACGGATAATTACTAC+AGG | 0.543566 | 3_3:+14226485 | None:intergenic |
TTTGTGGATGTCAGTGACCT+GGG | 0.544843 | 3_3:-14223914 | Msa0443470:three_prime_UTR |
ACAGGCATCAAAACTGGAGG+AGG | 0.544938 | 3_3:+14225288 | None:intergenic |
CCGTCGGGGATCAGGTCTAA+AGG | 0.547560 | 3_3:+14225016 | None:intergenic |
GAACGCATCGTCATTCCTGA+TGG | 0.548956 | 3_3:+14225086 | None:intergenic |
GACCTGATCCCCGACGGATG+CGG | 0.552652 | 3_3:-14225010 | Msa0443470:CDS |
CAAAGCCTTATCCCACTAAG+TGG | 0.552931 | 3_3:+14224018 | None:intergenic |
ACATCTATTAAGGGCTTAGA+GGG | 0.553584 | 3_3:-14226461 | Msa0443470:CDS |
GTTTCCCAACTGCCTCTCAT+GGG | 0.553750 | 3_3:+14225374 | None:intergenic |
TTTCAATACCCACAAGGATG+CGG | 0.555795 | 3_3:-14227334 | Msa0443470:CDS |
AGAGAAACCAACCCGGCACC+AGG | 0.556392 | 3_3:+14225264 | None:intergenic |
TATACCACTCCGCATCCTTG+TGG | 0.557388 | 3_3:+14227325 | None:intergenic |
TGAATCAGAATGGAGATCAA+TGG | 0.558047 | 3_3:-14229910 | None:intergenic |
CCTGATGGATCATACGAAGA+TGG | 0.561638 | 3_3:+14225101 | None:intergenic |
TTATACCTATTCAGGCCTCT+GGG | 0.561914 | 3_3:-14225179 | Msa0443470:intron |
AGGACAAGCCTTTAAAGCGA+AGG | 0.563691 | 3_3:-14225491 | Msa0443470:CDS |
GCCATCCCATGAGAGGCAGT+TGG | 0.567581 | 3_3:-14225379 | Msa0443470:CDS |
TTCTGGTGGAGCAGGAACAA+AGG | 0.568203 | 3_3:+14225154 | None:intergenic |
GTAAAAGAAGAAGACATGGC+AGG | 0.568918 | 3_3:-14226709 | Msa0443470:CDS |
ATTTACTTACAGTAATTGAA+AGG | 0.571034 | 3_3:-14227138 | Msa0443470:intron |
TTATGCAGATTTGCCAAGTG+GGG | 0.573070 | 3_3:-14228469 | Msa0443470:CDS |
CTTATCCCACTAAGTGGGAT+CGG | 0.573648 | 3_3:+14224024 | None:intergenic |
GTCCTATAAGCAATTCATCC+AGG | 0.574466 | 3_3:-14227549 | Msa0443470:CDS |
TGCTGCAGCAGCTGACATGT+TGG | 0.575171 | 3_3:-14226201 | Msa0443470:CDS |
GACAGTAACTTCTTCTTCTG+GGG | 0.578270 | 3_3:+14224347 | None:intergenic |
ATAAGTACCTCCGCATCCGT+CGG | 0.578460 | 3_3:+14225000 | None:intergenic |
GGAATCGGCGAGACCAGGAT+AGG | 0.578499 | 3_3:-14225437 | Msa0443470:CDS |
GTAATCTAGTTGTAATAATG+GGG | 0.578512 | 3_3:-14224224 | Msa0443470:three_prime_UTR |
AGCCAGTGAGCCCAATTCAG+AGG | 0.578683 | 3_3:-14226750 | Msa0443470:CDS |
CATCGAACATTGTTTCATCA+CGG | 0.580490 | 3_3:+14225352 | None:intergenic |
TAAAAGAAGAAGACATGGCA+GGG | 0.583889 | 3_3:-14226708 | Msa0443470:CDS |
AAGTTACTGTCATAGACTAT+CGG | 0.585625 | 3_3:-14224335 | Msa0443470:CDS |
GCCGATTGAAAGATGATCGT+GGG | 0.585756 | 3_3:-14225458 | Msa0443470:CDS |
ATGTGAGACCAGAAGGAGCA+AGG | 0.587740 | 3_3:-14226340 | Msa0443470:CDS |
GGGTAGTTTACAATTTGACC+TGG | 0.587884 | 3_3:+14223884 | None:intergenic |
TCTGAGTTGAATGATACAGC+AGG | 0.589557 | 3_3:+14225318 | None:intergenic |
AAGGCTCGCAGTGGATCTGT+GGG | 0.592274 | 3_3:-14226509 | Msa0443470:CDS |
AAATGCTCGACGTTTGGCAA+AGG | 0.592998 | 3_3:-14226957 | Msa0443470:CDS |
TTTGACCTGGATTAAAACCC+AGG | 0.593127 | 3_3:+14223897 | None:intergenic |
ATATTCCGATCCCACTTAGT+GGG | 0.594647 | 3_3:-14224029 | Msa0443470:three_prime_UTR |
TACCTACGCTCAGCTTCAGA+TGG | 0.594958 | 3_3:+14227506 | None:intergenic |
TTGATTATCCACCAAAACCT+GGG | 0.595127 | 3_3:+14224055 | None:intergenic |
TTGTGAATTATTTCAGAGAG+GGG | 0.596322 | 3_3:-14227577 | Msa0443470:CDS |
CGGGGATCAGGTCTAAAGGT+GGG | 0.597507 | 3_3:+14225020 | None:intergenic |
TTAATTCCAACACAAGCTCT+GGG | 0.597647 | 3_3:+14226057 | None:intergenic |
TATGCAGATTTGCCAAGTGG+GGG | 0.600967 | 3_3:-14228468 | Msa0443470:CDS |
ATAGGAAAAGACCTGATACA+AGG | 0.607113 | 3_3:+14223939 | None:intergenic |
TCGGGGATCAGGTCTAAAGG+TGG | 0.610998 | 3_3:+14225019 | None:intergenic |
AAAACACCCAGAGCTTGTGT+TGG | 0.614464 | 3_3:-14226063 | Msa0443470:CDS |
CTGATCCCCGACGGATGCGG+AGG | 0.614753 | 3_3:-14225007 | Msa0443470:intron |
CAGGCATCAAAACTGGAGGA+GGG | 0.615388 | 3_3:+14225289 | None:intergenic |
GGTTATGCAGATTTGCCAAG+TGG | 0.618297 | 3_3:-14228471 | Msa0443470:CDS |
TCAGAGGAGGAAACAGATGC+CGG | 0.623419 | 3_3:-14226734 | Msa0443470:CDS |
GTGGTGCAGTTATCAAGACT+TGG | 0.626723 | 3_3:-14224373 | Msa0443470:intron |
AGTGATCCTGATGCTCCTGG+TGG | 0.627928 | 3_3:-14225895 | Msa0443470:CDS |
CCTTTAGACCTGATCCCCGA+CGG | 0.633767 | 3_3:-14225016 | Msa0443470:CDS |
AAGTACCTCCGCATCCGTCG+GGG | 0.635573 | 3_3:+14225002 | None:intergenic |
GGCCGATTGAAAGATGATCG+TGG | 0.636197 | 3_3:-14225459 | Msa0443470:CDS |
TATGGTTGGAAGTATGGCTG+TGG | 0.637523 | 3_3:-14226146 | Msa0443470:CDS |
ATAGTTCGCCATCCCATGAG+AGG | 0.637985 | 3_3:-14225386 | Msa0443470:CDS |
TTAAAGCGAAGGTTACTGGA+AGG | 0.638659 | 3_3:-14225480 | Msa0443470:CDS |
GCTTGTGAATTATTTCAGAG+AGG | 0.640164 | 3_3:-14227579 | Msa0443470:CDS |
CCTTAATAGATGTTAAGCCA+CGG | 0.640737 | 3_3:+14226471 | None:intergenic |
CAGTGAGCCCAATTCAGAGG+AGG | 0.641145 | 3_3:-14226747 | Msa0443470:CDS |
CGTTCTGGTCCTCACATAGG+GGG | 0.645123 | 3_3:-14225068 | Msa0443470:CDS |
GCGTTCTGGTCCTCACATAG+GGG | 0.645525 | 3_3:-14225069 | Msa0443470:CDS |
CTTGAGACTAGTGATGCCAA+AGG | 0.645562 | 3_3:-14226371 | Msa0443470:CDS |
GCAGATCTGGATGCCAATCG+CGG | 0.645963 | 3_3:-14228492 | Msa0443470:intron |
CTTGGAAGTAAGGACTGCAA+AGG | 0.649139 | 3_3:-14226234 | Msa0443470:CDS |
TGTTGTTCGTAAGCTTGACA+AGG | 0.650753 | 3_3:-14226588 | Msa0443470:CDS |
GGGAGGAACAGCAATCATAG+AGG | 0.652456 | 3_3:+14225040 | None:intergenic |
AAAGCCTTATCCCACTAAGT+GGG | 0.653056 | 3_3:+14224019 | None:intergenic |
TTCTAGGTTCAGAACTGACA+GGG | 0.653359 | 3_3:+14226642 | None:intergenic |
AGGCATCAAAACTGGAGGAG+GGG | 0.658058 | 3_3:+14225290 | None:intergenic |
AATAGTGATAAGGCTCGCAG+TGG | 0.662545 | 3_3:-14226518 | Msa0443470:CDS |
TAATCTAGTTGTAATAATGG+GGG | 0.662924 | 3_3:-14224223 | Msa0443470:three_prime_UTR |
AGCTTATTTCAATACCCACA+AGG | 0.664399 | 3_3:-14227340 | Msa0443470:CDS |
GGCCCTGTAGTAATTATCCG+TGG | 0.666056 | 3_3:-14226488 | Msa0443470:CDS |
TGCCATCTGAAGCTGAGCGT+AGG | 0.669466 | 3_3:-14227508 | Msa0443470:intron |
AAAAGAAGAAGACATGGCAG+GGG | 0.670768 | 3_3:-14226707 | Msa0443470:CDS |
ACAATGTTCGATGCATATGG+TGG | 0.677228 | 3_3:-14225342 | Msa0443470:CDS |
ATGAAGAAACAGCTAAGTCG+GGG | 0.681698 | 3_3:-14226316 | Msa0443470:CDS |
GGATCAGGTCTAAAGGTGGG+AGG | 0.688645 | 3_3:+14225023 | None:intergenic |
GGTGGTAAAAGAAGAAGACA+TGG | 0.697775 | 3_3:-14226713 | Msa0443470:CDS |
GCAGGAACAAAGGGTCCCAG+AGG | 0.699153 | 3_3:+14225164 | None:intergenic |
GGTACAGGCATCAAAACTGG+AGG | 0.702355 | 3_3:+14225285 | None:intergenic |
GAGGAGGAAACAGATGCCGG+TGG | 0.705310 | 3_3:-14226731 | Msa0443470:CDS |
ATTATCCACCAAAACCTGGG+AGG | 0.707559 | 3_3:+14224058 | None:intergenic |
ATACCCACAAGGATGCGGAG+TGG | 0.729545 | 3_3:-14227329 | Msa0443470:intron |
AGCCACGGATAATTACTACA+GGG | 0.753218 | 3_3:+14226486 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAATAAAAAAATCAATAG+AGG | + | chr3_3:14224746-14224765 | None:intergenic | 10.0% |
!!! | TTAATATGTTTTTTATGTTA+TGG | - | chr3_3:14225219-14225238 | Msa0443470:intron | 10.0% |
!!! | TAATATGTTTTTTATGTTAT+GGG | - | chr3_3:14225220-14225239 | Msa0443470:intron | 10.0% |
!! | ATAAACAAAAAAATTTGATT+TGG | + | chr3_3:14228820-14228839 | None:intergenic | 10.0% |
!! | TAAAATACAATAAAATAACA+TGG | + | chr3_3:14228928-14228947 | None:intergenic | 10.0% |
!! | TAAAATACATACTGAATTAT+GGG | + | chr3_3:14224505-14224524 | None:intergenic | 15.0% |
!! | ATAAAATACATACTGAATTA+TGG | + | chr3_3:14224506-14224525 | None:intergenic | 15.0% |
!! | TAAATCTTGATCAATTAATT+GGG | - | chr3_3:14225117-14225136 | Msa0443470:CDS | 15.0% |
!!! | TATGTATAAATTTCCTTTTA+GGG | - | chr3_3:14225181-14225200 | Msa0443470:intron | 15.0% |
!!! | AATTTTCAAATATTCTTAGA+TGG | - | chr3_3:14225503-14225522 | Msa0443470:intron | 15.0% |
!! | TTTAGATCAAAATCAATTAA+CGG | + | chr3_3:14226558-14226577 | None:intergenic | 15.0% |
!! | TATATAATTTATACCTATTC+AGG | - | chr3_3:14228566-14228585 | Msa0443470:intron | 15.0% |
!! | ACATAAAAAATAGTATGATT+TGG | + | chr3_3:14228864-14228883 | None:intergenic | 15.0% |
!! | TCTAAAAATCACATAAAAAA+GGG | + | chr3_3:14228888-14228907 | None:intergenic | 15.0% |
!!! | TTATTTTATTGTATTTTACC+TGG | - | chr3_3:14228930-14228949 | Msa0443470:intron | 15.0% |
!!! | GTCCTTAAGTTTTTTAAATT+TGG | - | chr3_3:14223938-14223957 | Msa0443470:three_prime_UTR | 20.0% |
!! | TGCCAAATTTAAAAAACTTA+AGG | + | chr3_3:14223943-14223962 | None:intergenic | 20.0% |
!! | TAAAATACTTCTGTAGTAAA+AGG | - | chr3_3:14224637-14224656 | Msa0443470:intron | 20.0% |
!! | GAGAATAAAAAAAACAGTAT+TGG | + | chr3_3:14225012-14225031 | None:intergenic | 20.0% |
!! | CTAAATCTTGATCAATTAAT+TGG | - | chr3_3:14225116-14225135 | Msa0443470:CDS | 20.0% |
!!! | GTATGTATAAATTTCCTTTT+AGG | - | chr3_3:14225180-14225199 | Msa0443470:intron | 20.0% |
!!! | TTTTTATGTTATGGGTTTTA+TGG | - | chr3_3:14225228-14225247 | Msa0443470:intron | 20.0% |
!!! | TTTTATGTTATGGGTTTTAT+GGG | - | chr3_3:14225229-14225248 | Msa0443470:intron | 20.0% |
!!! | TTTCTCTTTTGTTTTTCATT+TGG | - | chr3_3:14225981-14226000 | Msa0443470:intron | 20.0% |
!! | ATTACTGTAAGTAAATTTGT+TGG | + | chr3_3:14226611-14226630 | None:intergenic | 20.0% |
!! | ATTTACTTACAGTAATTGAA+AGG | - | chr3_3:14226615-14226634 | Msa0443470:CDS | 20.0% |
!! | TAATTATATTCAATCCTATC+TGG | - | chr3_3:14226749-14226768 | Msa0443470:CDS | 20.0% |
!! | TCTCATAATTCAATGAATTT+AGG | + | chr3_3:14226920-14226939 | None:intergenic | 20.0% |
!! | TCATAGTAAAAATAGTGATA+AGG | - | chr3_3:14227225-14227244 | Msa0443470:intron | 20.0% |
!!! | AGAAAAAACTTGATTCATTT+TGG | - | chr3_3:14227470-14227489 | Msa0443470:intron | 20.0% |
!! | ATCCATATGTTAGAAAAATT+AGG | - | chr3_3:14227575-14227594 | Msa0443470:CDS | 20.0% |
!! | TCCATATGTTAGAAAAATTA+GGG | - | chr3_3:14227576-14227595 | Msa0443470:CDS | 20.0% |
!! | AACCACTAAACAAAAATAAA+AGG | + | chr3_3:14227785-14227804 | None:intergenic | 20.0% |
!! | CTTCTAGATATAAAATTGTA+TGG | + | chr3_3:14227930-14227949 | None:intergenic | 20.0% |
!!! | TACAATTAAAAGCTTTATTG+AGG | - | chr3_3:14228531-14228550 | Msa0443470:intron | 20.0% |
!!! | CTCTAAAAATCACATAAAAA+AGG | + | chr3_3:14228889-14228908 | None:intergenic | 20.0% |
!!! | ATAAAGTTGATTGACATTTT+GGG | - | chr3_3:14228996-14229015 | Msa0443470:intron | 20.0% |
!!! | TCAATTTTATAAAACACATG+TGG | - | chr3_3:14229190-14229209 | Msa0443470:intron | 20.0% |
!! | TGGATTATTAAAATAACATG+TGG | - | chr3_3:14229210-14229229 | Msa0443470:intron | 20.0% |
!! | ATTATTAAAATAACATGTGG+TGG | - | chr3_3:14229213-14229232 | Msa0443470:intron | 20.0% |
!! | TTATTAAAATAACATGTGGT+GGG | - | chr3_3:14229214-14229233 | Msa0443470:intron | 20.0% |
!!! | TAATTTTAGTCAACTATACT+CGG | - | chr3_3:14229498-14229517 | Msa0443470:intron | 20.0% |
!! | TGTAATCTAGTTGTAATAAT+GGG | - | chr3_3:14229528-14229547 | Msa0443470:intron | 20.0% |
!! | CTATGGTTAAAAAATTATGT+TGG | - | chr3_3:14229791-14229810 | Msa0443470:intron | 20.0% |
!! | GCAAATTGAAATTATGATTT+GGG | + | chr3_3:14229892-14229911 | None:intergenic | 20.0% |
!! | AGCAAATTGAAATTATGATT+TGG | + | chr3_3:14229893-14229912 | None:intergenic | 20.0% |
! | GCTTTCTTATAGTAGTATTA+AGG | + | chr3_3:14223883-14223902 | None:intergenic | 25.0% |
! | AGTTAACAATGGAATTCTAA+AGG | + | chr3_3:14223977-14223996 | None:intergenic | 25.0% |
!! | GTCTAAAGTTTAGTTAACAA+TGG | + | chr3_3:14223988-14224007 | None:intergenic | 25.0% |
! | TTTCTCTCATGTAATCTTAA+GGG | - | chr3_3:14224008-14224027 | Msa0443470:three_prime_UTR | 25.0% |
! | AACAACAATCACATTTGATT+GGG | + | chr3_3:14224368-14224387 | None:intergenic | 25.0% |
! | AAACAACAATCACATTTGAT+TGG | + | chr3_3:14224369-14224388 | None:intergenic | 25.0% |
!!! | ATCAAATGTGATTGTTGTTT+TGG | - | chr3_3:14224369-14224388 | Msa0443470:intron | 25.0% |
!!! | TCAAATGTGATTGTTGTTTT+GGG | - | chr3_3:14224370-14224389 | Msa0443470:intron | 25.0% |
!! | TTTAGTCTATTCAGTGTTTT+TGG | - | chr3_3:14224533-14224552 | Msa0443470:intron | 25.0% |
!! | TTAGTCTATTCAGTGTTTTT+GGG | - | chr3_3:14224534-14224553 | Msa0443470:intron | 25.0% |
!! | ATTTTATTCTTTTCTCCTGA+TGG | - | chr3_3:14224775-14224794 | Msa0443470:intron | 25.0% |
! | TGTAATATTGAGACATTCAA+TGG | - | chr3_3:14224857-14224876 | Msa0443470:intron | 25.0% |
!! | CAAGATTTAGAACTAGATAA+CGG | + | chr3_3:14225106-14225125 | None:intergenic | 25.0% |
! | TTCAAAGAAATACATGATAC+AGG | + | chr3_3:14225369-14225388 | None:intergenic | 25.0% |
! | TAATGTTCCAATATCTTGAA+TGG | - | chr3_3:14225526-14225545 | Msa0443470:intron | 25.0% |
! | AATGTTCCAATATCTTGAAT+GGG | - | chr3_3:14225527-14225546 | Msa0443470:intron | 25.0% |
! | CTTGTATAATCACTATAACA+AGG | + | chr3_3:14225573-14225592 | None:intergenic | 25.0% |
!! | CTTGTTATAGTGATTATACA+AGG | - | chr3_3:14225571-14225590 | Msa0443470:intron | 25.0% |
!! | AACTTAGCAATGTGATATTT+TGG | - | chr3_3:14226129-14226148 | Msa0443470:CDS | 25.0% |
!! | ACTTAGCAATGTGATATTTT+GGG | - | chr3_3:14226130-14226149 | Msa0443470:CDS | 25.0% |
!!! | ATTGAAATAAGCTCGTTTTT+GGG | + | chr3_3:14226406-14226425 | None:intergenic | 25.0% |
!! | TATTGAAATAAGCTCGTTTT+TGG | + | chr3_3:14226407-14226426 | None:intergenic | 25.0% |
! | TTTGATCTAAACTTTGATGT+AGG | - | chr3_3:14226567-14226586 | Msa0443470:CDS | 25.0% |
! | ACACACTTATAACATATCTT+TGG | - | chr3_3:14227329-14227348 | Msa0443470:intron | 25.0% |
! | ATTCATGGTGTAGATTATTA+TGG | - | chr3_3:14227355-14227374 | Msa0443470:CDS | 25.0% |
!! | TCCCTAATTTTTCTAACATA+TGG | + | chr3_3:14227580-14227599 | None:intergenic | 25.0% |
! | AAAATTAGGGATGAAAAGTA+TGG | - | chr3_3:14227589-14227608 | Msa0443470:CDS | 25.0% |
! | TGGAATTAACATCAAAATTG+CGG | - | chr3_3:14227710-14227729 | Msa0443470:intron | 25.0% |
!!! | AGCCTTTTATTTTTGTTTAG+TGG | - | chr3_3:14227780-14227799 | Msa0443470:intron | 25.0% |
!!! | CACATGTTTTGAAAACATTT+TGG | - | chr3_3:14227994-14228013 | Msa0443470:intron | 25.0% |
! | GCTTGTAAAATCCTATATTA+AGG | + | chr3_3:14228031-14228050 | None:intergenic | 25.0% |
! | AAGGGAACATATATAAACAA+GGG | + | chr3_3:14228788-14228807 | None:intergenic | 25.0% |
! | AAAGGGAACATATATAAACA+AGG | + | chr3_3:14228789-14228808 | None:intergenic | 25.0% |
!! | TGTTTATATATGTTCCCTTT+TGG | - | chr3_3:14228789-14228808 | Msa0443470:intron | 25.0% |
! | CAAAATGTCAATCAACTTTA+TGG | + | chr3_3:14228997-14229016 | None:intergenic | 25.0% |
!!! | CATAAAGTTGATTGACATTT+TGG | - | chr3_3:14228995-14229014 | Msa0443470:intron | 25.0% |
! | GAGTAAAAGATTATGCATAT+AGG | + | chr3_3:14229090-14229109 | None:intergenic | 25.0% |
!!! | AGTATTTCTATTTTCTACTG+TGG | - | chr3_3:14229237-14229256 | Msa0443470:intron | 25.0% |
!!! | TCAATATGTTAGATAATGGA+TGG | + | chr3_3:14229303-14229322 | None:intergenic | 25.0% |
! | CAACTCAATATGTTAGATAA+TGG | + | chr3_3:14229307-14229326 | None:intergenic | 25.0% |
! | TTAAACTAATTTCCTAATCG+TGG | - | chr3_3:14229361-14229380 | Msa0443470:intron | 25.0% |
! | CTGTAATCTAGTTGTAATAA+TGG | - | chr3_3:14229527-14229546 | Msa0443470:intron | 25.0% |
! | GTAATCTAGTTGTAATAATG+GGG | - | chr3_3:14229529-14229548 | Msa0443470:intron | 25.0% |
! | TAATCTAGTTGTAATAATGG+GGG | - | chr3_3:14229530-14229549 | Msa0443470:intron | 25.0% |
! | TTCTAATGTTACAACATCTA+TGG | + | chr3_3:14229577-14229596 | None:intergenic | 25.0% |
CTTTCTCTCATGTAATCTTA+AGG | - | chr3_3:14224007-14224026 | Msa0443470:three_prime_UTR | 30.0% | |
CTCCATAATGAAATATGTTC+CGG | - | chr3_3:14224084-14224103 | Msa0443470:three_prime_UTR | 30.0% | |
!!! | CAAATGTGATTGTTGTTTTG+GGG | - | chr3_3:14224371-14224390 | Msa0443470:intron | 30.0% |
!! | TAGTCTATTCAGTGTTTTTG+GGG | - | chr3_3:14224535-14224554 | Msa0443470:intron | 30.0% |
GAAAGAACTAAAAATGACAC+CGG | + | chr3_3:14224602-14224621 | None:intergenic | 30.0% | |
TAAAAGGTTACTTCTTCAGA+CGG | - | chr3_3:14224653-14224672 | Msa0443470:intron | 30.0% | |
! | GAAATAATTTGACTTCCATC+AGG | + | chr3_3:14224793-14224812 | None:intergenic | 30.0% |
!!! | TCAGTTTTGAATGACAAGAA+TGG | + | chr3_3:14224815-14224834 | None:intergenic | 30.0% |
CTTGATCAATTAATTGGGAA+AGG | - | chr3_3:14225122-14225141 | Msa0443470:CDS | 30.0% | |
ATAATTTACGTCACCCTAAA+AGG | + | chr3_3:14225197-14225216 | None:intergenic | 30.0% | |
ACAACTAATCTCTTCAATGA+AGG | - | chr3_3:14225394-14225413 | Msa0443470:CDS | 30.0% | |
GGTTATTGACAAACGAAATA+TGG | - | chr3_3:14225415-14225434 | Msa0443470:CDS | 30.0% | |
ATCTTGCACTCTTAGTATAT+TGG | + | chr3_3:14225449-14225468 | None:intergenic | 30.0% | |
TTTATCACCATAGGAGAATT+GGG | + | chr3_3:14225702-14225721 | None:intergenic | 30.0% | |
ATTTATCACCATAGGAGAAT+TGG | + | chr3_3:14225703-14225722 | None:intergenic | 30.0% | |
ATTCTCCTATGGTGATAAAT+AGG | - | chr3_3:14225703-14225722 | Msa0443470:intron | 30.0% | |
ATATGCCTATTTATCACCAT+AGG | + | chr3_3:14225711-14225730 | None:intergenic | 30.0% | |
TATGGTGATAAATAGGCATA+TGG | - | chr3_3:14225710-14225729 | Msa0443470:intron | 30.0% | |
AAGTGGCAAATTGACATAAT+GGG | + | chr3_3:14225856-14225875 | None:intergenic | 30.0% | |
CACATTATCTGTTTACTTTG+AGG | - | chr3_3:14225929-14225948 | Msa0443470:intron | 30.0% | |
!! | CTTTTGACTATCATTCATCT+AGG | + | chr3_3:14226039-14226058 | None:intergenic | 30.0% |
CTAGATGAATGATAGTCAAA+AGG | - | chr3_3:14226037-14226056 | Msa0443470:CDS | 30.0% | |
! | CTTAGCAATGTGATATTTTG+GGG | - | chr3_3:14226131-14226150 | Msa0443470:CDS | 30.0% |
CTTGTGAATTATTTCAGAGA+GGG | - | chr3_3:14226175-14226194 | Msa0443470:CDS | 30.0% | |
TTGTGAATTATTTCAGAGAG+GGG | - | chr3_3:14226176-14226195 | Msa0443470:CDS | 30.0% | |
GAGCTAAGAAAAAACGTAAA+AGG | + | chr3_3:14226291-14226310 | None:intergenic | 30.0% | |
ATTGCAACATCATTCATCAA+TGG | + | chr3_3:14226339-14226358 | None:intergenic | 30.0% | |
TCAATTGAAATTTCAGCAGT+GGG | + | chr3_3:14226463-14226482 | None:intergenic | 30.0% | |
TAAAAGATTATGTGCCAGAT+AGG | + | chr3_3:14226766-14226785 | None:intergenic | 30.0% | |
! | TATCTGGCACATAATCTTTT+AGG | - | chr3_3:14226765-14226784 | Msa0443470:CDS | 30.0% |
!!! | TTTTTGCTTGATTTGCAAAG+TGG | - | chr3_3:14226821-14226840 | Msa0443470:intron | 30.0% |
ATATCTTCTTGTATCCTTCT+AGG | + | chr3_3:14227130-14227149 | None:intergenic | 30.0% | |
GATACAAGAAGATATTCATC+AGG | - | chr3_3:14227135-14227154 | Msa0443470:intron | 30.0% | |
CACTTATAACATATCTTTGG+CGG | - | chr3_3:14227332-14227351 | Msa0443470:CDS | 30.0% | |
GGAATTAACATCAAAATTGC+GGG | - | chr3_3:14227711-14227730 | Msa0443470:intron | 30.0% | |
! | GTTTTCAAAACATGTGATCA+CGG | + | chr3_3:14227990-14228009 | None:intergenic | 30.0% |
TCTCTTGTCTACCTTAATAT+AGG | - | chr3_3:14228017-14228036 | Msa0443470:intron | 30.0% | |
AAATATATGCTGCTGTCTAT+GGG | - | chr3_3:14228115-14228134 | Msa0443470:intron | 30.0% | |
GACTTTGTGCAGAAATATAT+TGG | + | chr3_3:14228185-14228204 | None:intergenic | 30.0% | |
ATTTCTGCACAAAGTCATTA+TGG | - | chr3_3:14228189-14228208 | Msa0443470:intron | 30.0% | |
GAAGAAAGAAAATGGAGAAT+GGG | + | chr3_3:14228230-14228249 | None:intergenic | 30.0% | |
!! | TTGATTTGGAGATACCAAAA+GGG | + | chr3_3:14228806-14228825 | None:intergenic | 30.0% |
!! | TTTGATTTGGAGATACCAAA+AGG | + | chr3_3:14228807-14228826 | None:intergenic | 30.0% |
AAAACCAAAACCAATTCTAC+TGG | + | chr3_3:14229028-14229047 | None:intergenic | 30.0% | |
!!! | AGTAGAATTGGTTTTGGTTT+TGG | - | chr3_3:14229027-14229046 | Msa0443470:intron | 30.0% |
!!! | TTTTGGAACTGTTCTAACTT+GGG | - | chr3_3:14229044-14229063 | Msa0443470:intron | 30.0% |
AAGATTATGCATATAGGCAA+AGG | + | chr3_3:14229084-14229103 | None:intergenic | 30.0% | |
AAGTTACTGTCATAGACTAT+CGG | - | chr3_3:14229418-14229437 | Msa0443470:intron | 30.0% | |
AAAAATAAGATATAGCAGCC+AGG | + | chr3_3:14229621-14229640 | None:intergenic | 30.0% | |
TGTTGTGGATAATCAAACTA+TGG | - | chr3_3:14229774-14229793 | Msa0443470:intron | 30.0% | |
!! | CATCGACTCTTAGATGAAAA+GGG | - | chr3_3:14224031-14224050 | Msa0443470:three_prime_UTR | 35.0% |
CGGAACATATTTCATTATGG+AGG | + | chr3_3:14224086-14224105 | None:intergenic | 35.0% | |
GTCCGGAACATATTTCATTA+TGG | + | chr3_3:14224089-14224108 | None:intergenic | 35.0% | |
AATGAAATATGTTCCGGACT+AGG | - | chr3_3:14224090-14224109 | Msa0443470:three_prime_UTR | 35.0% | |
GAGCAAATCTTGCTTGTAAA+TGG | + | chr3_3:14224263-14224282 | None:intergenic | 35.0% | |
CACTAACTAACACTTGCTTA+GGG | + | chr3_3:14224291-14224310 | None:intergenic | 35.0% | |
CTAAGCAAGTGTTAGTTAGT+GGG | - | chr3_3:14224290-14224309 | Msa0443470:three_prime_UTR | 35.0% | |
! | AAGTGTTAGTTAGTGGGTAT+AGG | - | chr3_3:14224296-14224315 | Msa0443470:three_prime_UTR | 35.0% |
TAAATACCAAACAACAGCCA+GGG | + | chr3_3:14225070-14225089 | None:intergenic | 35.0% | |
ATAAATACCAAACAACAGCC+AGG | + | chr3_3:14225071-14225090 | None:intergenic | 35.0% | |
!!! | TGGGTTTTATTTTGCAGATC+TGG | - | chr3_3:14225248-14225267 | Msa0443470:intron | 35.0% |
AAGAAATACATGATACAGGC+AGG | + | chr3_3:14225365-14225384 | None:intergenic | 35.0% | |
TCCATAATCTCATCTCAAAG+CGG | + | chr3_3:14225636-14225655 | None:intergenic | 35.0% | |
GATGAGATTATGGATGTTCT+TGG | - | chr3_3:14225642-14225661 | Msa0443470:intron | 35.0% | |
TTATCACCATAGGAGAATTG+GGG | + | chr3_3:14225701-14225720 | None:intergenic | 35.0% | |
! | AGTTGTTGTTAAGAAGACTG+AGG | - | chr3_3:14225791-14225810 | Msa0443470:intron | 35.0% |
! | GTTGTTGTTAAGAAGACTGA+GGG | - | chr3_3:14225792-14225811 | Msa0443470:intron | 35.0% |
! | TTGTTGTTAAGAAGACTGAG+GGG | - | chr3_3:14225793-14225812 | Msa0443470:intron | 35.0% |
AGTGGCAAATTGACATAATG+GGG | + | chr3_3:14225855-14225874 | None:intergenic | 35.0% | |
GAAGTGGCAAATTGACATAA+TGG | + | chr3_3:14225857-14225876 | None:intergenic | 35.0% | |
TTGGGATTGTTTGAAAGAAG+TGG | + | chr3_3:14225873-14225892 | None:intergenic | 35.0% | |
AACAATCCCAAAGTCTTCTT+TGG | - | chr3_3:14225882-14225901 | Msa0443470:CDS | 35.0% | |
! | CTGTTTACTTTGAGGAAGAT+TGG | - | chr3_3:14225937-14225956 | Msa0443470:intron | 35.0% |
AGTCAAAAGGTTAGAGATAG+AGG | - | chr3_3:14226050-14226069 | Msa0443470:CDS | 35.0% | |
GTCAAAAGGTTAGAGATAGA+GGG | - | chr3_3:14226051-14226070 | Msa0443470:CDS | 35.0% | |
GCTTGTGAATTATTTCAGAG+AGG | - | chr3_3:14226174-14226193 | Msa0443470:CDS | 35.0% | |
! | TATACTCTGACTTGTACTCT+TGG | + | chr3_3:14226377-14226396 | None:intergenic | 35.0% |
AGCTTATTTCAATACCCACA+AGG | - | chr3_3:14226413-14226432 | Msa0443470:CDS | 35.0% | |
GTCAATTGAAATTTCAGCAG+TGG | + | chr3_3:14226464-14226483 | None:intergenic | 35.0% | |
ACCATTCATCAACGTAAAGA+GGG | + | chr3_3:14226687-14226706 | None:intergenic | 35.0% | |
TACCATTCATCAACGTAAAG+AGG | + | chr3_3:14226688-14226707 | None:intergenic | 35.0% | |
TGAATGGTAGAGAAATAGTC+AGG | - | chr3_3:14226699-14226718 | Msa0443470:CDS | 35.0% | |
AAACACACATAAAGTGAGAG+AGG | + | chr3_3:14226871-14226890 | None:intergenic | 35.0% | |
! | TATGATTTGTGCAGAAATCC+AGG | - | chr3_3:14226950-14226969 | Msa0443470:CDS | 35.0% |
! | ATGTCTTCTTCTTTTACCAC+CGG | + | chr3_3:14227041-14227060 | None:intergenic | 35.0% |
TAAAAGAAGAAGACATGGCA+GGG | - | chr3_3:14227045-14227064 | Msa0443470:intron | 35.0% | |
AGAAGATATTCATCAGGTTC+AGG | - | chr3_3:14227141-14227160 | Msa0443470:CDS | 35.0% | |
GTAAGCTTGACAAGGAAAAA+GGG | - | chr3_3:14227173-14227192 | Msa0443470:intron | 35.0% | |
CCTTAATAGATGTTAAGCCA+CGG | + | chr3_3:14227285-14227304 | None:intergenic | 35.0% | |
CGTGGCTTAACATCTATTAA+GGG | - | chr3_3:14227283-14227302 | Msa0443470:intron | 35.0% | |
AACATCTATTAAGGGCTTAG+AGG | - | chr3_3:14227291-14227310 | Msa0443470:intron | 35.0% | |
ACATCTATTAAGGGCTTAGA+GGG | - | chr3_3:14227292-14227311 | Msa0443470:intron | 35.0% | |
!! | TTGATTCATTTTGGCAGAGA+AGG | - | chr3_3:14227479-14227498 | Msa0443470:intron | 35.0% |
! | TTAGGGATGAAAAGTATGGT+TGG | - | chr3_3:14227593-14227612 | Msa0443470:CDS | 35.0% |
! | GAAAAGTATGGTTGGAAGTA+TGG | - | chr3_3:14227601-14227620 | Msa0443470:CDS | 35.0% |
! | AAAAAGCTTTGTGCAACTCT+TGG | + | chr3_3:14227635-14227654 | None:intergenic | 35.0% |
TTAATTCCAACACAAGCTCT+GGG | + | chr3_3:14227699-14227718 | None:intergenic | 35.0% | |
TTAGTGGTTAATCTTGCAAG+TGG | - | chr3_3:14227796-14227815 | Msa0443470:intron | 35.0% | |
AGACAGCAGCATATATTTCA+AGG | + | chr3_3:14228113-14228132 | None:intergenic | 35.0% | |
GAAATATATGCTGCTGTCTA+TGG | - | chr3_3:14228114-14228133 | Msa0443470:intron | 35.0% | |
AATATATGCTGCTGTCTATG+GGG | - | chr3_3:14228116-14228135 | Msa0443470:intron | 35.0% | |
GAGCATGATGTTTCACAATT+GGG | - | chr3_3:14228143-14228162 | Msa0443470:intron | 35.0% | |
GGAAGAAAGAAAATGGAGAA+TGG | + | chr3_3:14228231-14228250 | None:intergenic | 35.0% | |
TAGAGAGGGAAGAAAGAAAA+TGG | + | chr3_3:14228238-14228257 | None:intergenic | 35.0% | |
CTTTCTTCCCTCTCTATTTA+AGG | - | chr3_3:14228242-14228261 | Msa0443470:intron | 35.0% | |
CATCGAACATTGTTTCATCA+CGG | + | chr3_3:14228404-14228423 | None:intergenic | 35.0% | |
GAAACAATGTTCGATGCATA+TGG | - | chr3_3:14228408-14228427 | Msa0443470:intron | 35.0% | |
AAGTAAAAGAGAAACCAACC+CGG | + | chr3_3:14228499-14228518 | None:intergenic | 35.0% | |
!! | AAAGCTTTATTGAGGTTTGC+TGG | - | chr3_3:14228539-14228558 | Msa0443470:intron | 35.0% |
GTCAATCAACTTTATGGAAC+TGG | + | chr3_3:14228991-14229010 | None:intergenic | 35.0% | |
!!! | GTTTTGGAACTGTTCTAACT+TGG | - | chr3_3:14229043-14229062 | Msa0443470:intron | 35.0% |
GTATGTGATTGACTGTTTAG+TGG | - | chr3_3:14229333-14229352 | Msa0443470:intron | 35.0% | |
TGACAGTAACTTCTTCTTCT+GGG | + | chr3_3:14229410-14229429 | None:intergenic | 35.0% | |
ATGACAGTAACTTCTTCTTC+TGG | + | chr3_3:14229411-14229430 | None:intergenic | 35.0% | |
TTGATTATCCACCAAAACCT+GGG | + | chr3_3:14229701-14229720 | None:intergenic | 35.0% | |
TTTGATTATCCACCAAAACC+TGG | + | chr3_3:14229702-14229721 | None:intergenic | 35.0% | |
! | TGTTGTTGTTGTTGTTGTTG+TGG | - | chr3_3:14229756-14229775 | Msa0443470:intron | 35.0% |
!! | AATTATGTTGGCCTTGTATC+AGG | - | chr3_3:14229803-14229822 | Msa0443470:intron | 35.0% |
ATAGGAAAAGACCTGATACA+AGG | + | chr3_3:14229817-14229836 | None:intergenic | 35.0% | |
! | AGGTCTTTTCCTATTGTTTG+TGG | - | chr3_3:14229823-14229842 | Msa0443470:intron | 35.0% |
!! | GCATCGACTCTTAGATGAAA+AGG | - | chr3_3:14224030-14224049 | Msa0443470:three_prime_UTR | 40.0% |
CTCTTAGATGAAAAGGGAGA+AGG | - | chr3_3:14224037-14224056 | Msa0443470:three_prime_UTR | 40.0% | |
CCACTAACTAACACTTGCTT+AGG | + | chr3_3:14224292-14224311 | None:intergenic | 40.0% | |
CCTAAGCAAGTGTTAGTTAG+TGG | - | chr3_3:14224289-14224308 | Msa0443470:three_prime_UTR | 40.0% | |
GACAGTATGTTTCACACATC+TGG | + | chr3_3:14224441-14224460 | None:intergenic | 40.0% | |
!!! | CTATTCAGTGTTTTTGGGGT+TGG | - | chr3_3:14224539-14224558 | Msa0443470:intron | 40.0% |
! | TTGAGGTAGCGATTTGAGAT+TGG | - | chr3_3:14224566-14224585 | Msa0443470:intron | 40.0% |
AAACCACTGAACAGCAAACA+AGG | + | chr3_3:14224944-14224963 | None:intergenic | 40.0% | |
! | TTGCTGTTCAGTGGTTTAAG+TGG | - | chr3_3:14224947-14224966 | Msa0443470:intron | 40.0% |
TGCTGTTCAGTGGTTTAAGT+GGG | - | chr3_3:14224948-14224967 | Msa0443470:intron | 40.0% | |
TTCAGTGGTTTAAGTGGGTA+TGG | - | chr3_3:14224953-14224972 | Msa0443470:intron | 40.0% | |
TGGTTTAAGAATGCCATGCA+GGG | + | chr3_3:14224992-14225011 | None:intergenic | 40.0% | |
TTGGTTTAAGAATGCCATGC+AGG | + | chr3_3:14224993-14225012 | None:intergenic | 40.0% | |
AAATACCAAACAACAGCCAG+GGG | + | chr3_3:14225069-14225088 | None:intergenic | 40.0% | |
GTTATGCAGATTTGCCAAGT+GGG | - | chr3_3:14225283-14225302 | Msa0443470:CDS | 40.0% | |
TTATGCAGATTTGCCAAGTG+GGG | - | chr3_3:14225284-14225303 | Msa0443470:CDS | 40.0% | |
GTTCCAATATCTTGAATGGG+TGG | - | chr3_3:14225530-14225549 | Msa0443470:intron | 40.0% | |
AAGCCACCCATTCAAGATAT+TGG | + | chr3_3:14225536-14225555 | None:intergenic | 40.0% | |
!! | ACCGCTTTGAGATGAGATTA+TGG | - | chr3_3:14225632-14225651 | Msa0443470:intron | 40.0% |
GAGATTATGGATGTTCTTGG+AGG | - | chr3_3:14225645-14225664 | Msa0443470:intron | 40.0% | |
AGATAATGTGATAAAGCCCC+AGG | + | chr3_3:14225919-14225938 | None:intergenic | 40.0% | |
!! | CTTTGAGGAAGATTGGTTTC+AGG | - | chr3_3:14225944-14225963 | Msa0443470:intron | 40.0% |
!! | AAGATTGGTTTCAGGCTCTA+TGG | - | chr3_3:14225952-14225971 | Msa0443470:intron | 40.0% |
AAAAGGTTAGAGATAGAGGG+AGG | - | chr3_3:14226054-14226073 | Msa0443470:CDS | 40.0% | |
! | CCACAGAAATCCTGATTTGT+GGG | - | chr3_3:14226077-14226096 | Msa0443470:CDS | 40.0% |
! | AATCCTGATTTGTGGGATGA+TGG | - | chr3_3:14226084-14226103 | Msa0443470:CDS | 40.0% |
GTCCTATAAGCAATTCATCC+AGG | - | chr3_3:14226204-14226223 | Msa0443470:CDS | 40.0% | |
CTCCTGGATGAATTGCTTAT+AGG | + | chr3_3:14226209-14226228 | None:intergenic | 40.0% | |
GTATATCATCTTCAAGCTCC+TGG | + | chr3_3:14226225-14226244 | None:intergenic | 40.0% | |
TTTCAATACCCACAAGGATG+CGG | - | chr3_3:14226419-14226438 | Msa0443470:CDS | 40.0% | |
! | TCCCTCTTTACGTTGATGAA+TGG | - | chr3_3:14226683-14226702 | Msa0443470:CDS | 40.0% |
! | CTGGCACATAATCTTTTAGG+AGG | - | chr3_3:14226768-14226787 | Msa0443470:CDS | 40.0% |
GAATGAAAATGCTCGACGTT+TGG | - | chr3_3:14226790-14226809 | Msa0443470:CDS | 40.0% | |
AATGAATTTAGGCAAGCGTG+AGG | + | chr3_3:14226909-14226928 | None:intergenic | 40.0% | |
TCTGTTTCCTCCTCTGAATT+GGG | + | chr3_3:14227016-14227035 | None:intergenic | 40.0% | |
ATCTGTTTCCTCCTCTGAAT+TGG | + | chr3_3:14227017-14227036 | None:intergenic | 40.0% | |
GGTGGTAAAAGAAGAAGACA+TGG | - | chr3_3:14227040-14227059 | Msa0443470:intron | 40.0% | |
GTAAAAGAAGAAGACATGGC+AGG | - | chr3_3:14227044-14227063 | Msa0443470:intron | 40.0% | |
AAAAGAAGAAGACATGGCAG+GGG | - | chr3_3:14227046-14227065 | Msa0443470:intron | 40.0% | |
TTCTAGGTTCAGAACTGACA+GGG | + | chr3_3:14227114-14227133 | None:intergenic | 40.0% | |
TGTTGTTCGTAAGCTTGACA+AGG | - | chr3_3:14227165-14227184 | Msa0443470:CDS | 40.0% | |
CGTAAGCTTGACAAGGAAAA+AGG | - | chr3_3:14227172-14227191 | Msa0443470:intron | 40.0% | |
AGCCACGGATAATTACTACA+GGG | + | chr3_3:14227270-14227289 | None:intergenic | 40.0% | |
AAGCCACGGATAATTACTAC+AGG | + | chr3_3:14227271-14227290 | None:intergenic | 40.0% | |
CCGTGGCTTAACATCTATTA+AGG | - | chr3_3:14227282-14227301 | Msa0443470:intron | 40.0% | |
!! | ACATATCTTTGGCGGATTCA+TGG | - | chr3_3:14227340-14227359 | Msa0443470:CDS | 40.0% |
! | CTAGTGATGCCAAAGGTTTT+AGG | - | chr3_3:14227389-14227408 | Msa0443470:intron | 40.0% |
TCTCACATGCCTAAAACCTT+TGG | + | chr3_3:14227401-14227420 | None:intergenic | 40.0% | |
GCATGAAGAAACAGCTAAGT+CGG | - | chr3_3:14227435-14227454 | Msa0443470:intron | 40.0% | |
CATGAAGAAACAGCTAAGTC+GGG | - | chr3_3:14227436-14227455 | Msa0443470:intron | 40.0% | |
ATGAAGAAACAGCTAAGTCG+GGG | - | chr3_3:14227437-14227456 | Msa0443470:intron | 40.0% | |
!! | TTCATTTTGGCAGAGAAGGT+TGG | - | chr3_3:14227483-14227502 | Msa0443470:intron | 40.0% |
TTTGCAGTCCTTACTTCCAA+GGG | + | chr3_3:14227520-14227539 | None:intergenic | 40.0% | |
GTTAATTCCAACACAAGCTC+TGG | + | chr3_3:14227700-14227719 | None:intergenic | 40.0% | |
CATCAGGATCACTACAATGA+AGG | + | chr3_3:14227851-14227870 | None:intergenic | 40.0% | |
TACAAGCAACTTTGCAGATG+TGG | - | chr3_3:14228044-14228063 | Msa0443470:intron | 40.0% | |
GGAGCATGATGTTTCACAAT+TGG | - | chr3_3:14228142-14228161 | Msa0443470:intron | 40.0% | |
GGCTTGTCCTTAAATAGAGA+GGG | + | chr3_3:14228252-14228271 | None:intergenic | 40.0% | |
AGGCTTGTCCTTAAATAGAG+AGG | + | chr3_3:14228253-14228272 | None:intergenic | 40.0% | |
TCCAGTAACCTTCGCTTTAA+AGG | + | chr3_3:14228273-14228292 | None:intergenic | 40.0% | |
TTAAAGCGAAGGTTACTGGA+AGG | - | chr3_3:14228273-14228292 | Msa0443470:intron | 40.0% | |
TCCCACGATCATCTTTCAAT+CGG | + | chr3_3:14228299-14228318 | None:intergenic | 40.0% | |
TGAAAGATGATCGTGGGAAT+CGG | - | chr3_3:14228301-14228320 | Msa0443470:intron | 40.0% | |
ACAATGTTCGATGCATATGG+TGG | - | chr3_3:14228411-14228430 | Msa0443470:intron | 40.0% | |
! | TCTGAGTTGAATGATACAGC+AGG | + | chr3_3:14228438-14228457 | None:intergenic | 40.0% |
TTTATACCTATTCAGGCCTC+TGG | - | chr3_3:14228573-14228592 | Msa0443470:intron | 40.0% | |
TTATACCTATTCAGGCCTCT+GGG | - | chr3_3:14228574-14228593 | Msa0443470:intron | 40.0% | |
AAGTTGCGATGCAGATGTTT+AGG | - | chr3_3:14228620-14228639 | Msa0443470:intron | 40.0% | |
AGTTGCGATGCAGATGTTTA+GGG | - | chr3_3:14228621-14228640 | Msa0443470:intron | 40.0% | |
ATGCAGATGTTTAGGGATCA+AGG | - | chr3_3:14228628-14228647 | Msa0443470:intron | 40.0% | |
!! | CTCTCCAGTAGAATTGGTTT+TGG | - | chr3_3:14229021-14229040 | Msa0443470:intron | 40.0% |
! | TTGATAACTGCACCACGATT+AGG | + | chr3_3:14229376-14229395 | None:intergenic | 40.0% |
GACAGTAACTTCTTCTTCTG+GGG | + | chr3_3:14229409-14229428 | None:intergenic | 40.0% | |
TTGGCTCATTGAGATTGGAT+TGG | - | chr3_3:14229461-14229480 | Msa0443470:intron | 40.0% | |
TCAATCAAAAACTACCTCCC+AGG | - | chr3_3:14229681-14229700 | Msa0443470:intron | 40.0% | |
! | AAAAACTACCTCCCAGGTTT+TGG | - | chr3_3:14229687-14229706 | Msa0443470:intron | 40.0% |
TATATTCCGATCCCACTTAG+TGG | - | chr3_3:14229723-14229742 | Msa0443470:intron | 40.0% | |
ATATTCCGATCCCACTTAGT+GGG | - | chr3_3:14229724-14229743 | Msa0443470:intron | 40.0% | |
! | AAAGCCTTATCCCACTAAGT+GGG | + | chr3_3:14229737-14229756 | None:intergenic | 40.0% |
CACTGACATCCACAAACAAT+AGG | + | chr3_3:14229835-14229854 | None:intergenic | 40.0% | |
TTTGACCTGGATTAAAACCC+AGG | + | chr3_3:14229859-14229878 | None:intergenic | 40.0% | |
GGGTAGTTTACAATTTGACC+TGG | + | chr3_3:14229872-14229891 | None:intergenic | 40.0% | |
! | ATATGTTCCGGACTAGGCAA+AGG | - | chr3_3:14224096-14224115 | Msa0443470:three_prime_UTR | 45.0% |
GTGTGCAGCAACTCAGATTA+GGG | + | chr3_3:14224337-14224356 | None:intergenic | 45.0% | |
AGTGTGCAGCAACTCAGATT+AGG | + | chr3_3:14224338-14224357 | None:intergenic | 45.0% | |
TCTCAAATCGCTACCTCAAG+TGG | + | chr3_3:14224565-14224584 | None:intergenic | 45.0% | |
! | TGAGATTGGTCACTATGCTC+CGG | - | chr3_3:14224580-14224599 | Msa0443470:intron | 45.0% |
!! | TGTCCTTGTTTGCTGTTCAG+TGG | - | chr3_3:14224938-14224957 | Msa0443470:intron | 45.0% |
GGTTTAAGAATGCCATGCAG+GGG | + | chr3_3:14224991-14225010 | None:intergenic | 45.0% | |
ATTCTCTCCCCACCTCTTAA+TGG | - | chr3_3:14225026-14225045 | Msa0443470:CDS | 45.0% | |
AAACACACCCCTCCATTAAG+AGG | + | chr3_3:14225041-14225060 | None:intergenic | 45.0% | |
AATACCAAACAACAGCCAGG+GGG | + | chr3_3:14225068-14225087 | None:intergenic | 45.0% | |
CAAATCTGCATAACCGCGAT+TGG | + | chr3_3:14225277-14225296 | None:intergenic | 45.0% | |
GGTTATGCAGATTTGCCAAG+TGG | - | chr3_3:14225282-14225301 | Msa0443470:CDS | 45.0% | |
TATGCAGATTTGCCAAGTGG+GGG | - | chr3_3:14225285-14225304 | Msa0443470:CDS | 45.0% | |
AGTAGCACTCAACAGAGATC+TGG | + | chr3_3:14225603-14225622 | None:intergenic | 45.0% | |
TCTTGGAGGAATTTGACGTG+CGG | - | chr3_3:14225659-14225678 | Msa0443470:intron | 45.0% | |
TGAACACCCCAATTCTCCTA+TGG | - | chr3_3:14225692-14225711 | Msa0443470:intron | 45.0% | |
TCCAAACAAATGCTCTCTGC+AGG | - | chr3_3:14225741-14225760 | Msa0443470:intron | 45.0% | |
CCAAACAAATGCTCTCTGCA+GGG | - | chr3_3:14225742-14225761 | Msa0443470:intron | 45.0% | |
CAGCTGCCAAAGAAGACTTT+GGG | + | chr3_3:14225891-14225910 | None:intergenic | 45.0% | |
CAAAGTCTTCTTTGGCAGCT+GGG | - | chr3_3:14225890-14225909 | Msa0443470:CDS | 45.0% | |
AAAGTCTTCTTTGGCAGCTG+GGG | - | chr3_3:14225891-14225910 | Msa0443470:CDS | 45.0% | |
! | ATTGGTTTCAGGCTCTATGG+AGG | - | chr3_3:14225955-14225974 | Msa0443470:intron | 45.0% |
! | GCCACAGAAATCCTGATTTG+TGG | - | chr3_3:14226076-14226095 | Msa0443470:CDS | 45.0% |
CCCACAAATCAGGATTTCTG+TGG | + | chr3_3:14226080-14226099 | None:intergenic | 45.0% | |
CAACCATCATCCCACAAATC+AGG | + | chr3_3:14226090-14226109 | None:intergenic | 45.0% | |
AAATGCTCGACGTTTGGCAA+AGG | - | chr3_3:14226796-14226815 | Msa0443470:intron | 45.0% | |
GTGGATGCAGAGTTTAAACC+TGG | + | chr3_3:14226971-14226990 | None:intergenic | 45.0% | |
!! | ACTGGCTTGCTCTGATTTAG+TGG | + | chr3_3:14226990-14227009 | None:intergenic | 45.0% |
ACATGGCAGGGGATCTAATA+AGG | - | chr3_3:14227057-14227076 | Msa0443470:intron | 45.0% | |
CTTCTAGGTTCAGAACTGAC+AGG | + | chr3_3:14227115-14227134 | None:intergenic | 45.0% | |
!! | CTGTCAGTTCTGAACCTAGA+AGG | - | chr3_3:14227113-14227132 | Msa0443470:intron | 45.0% |
AATAGTGATAAGGCTCGCAG+TGG | - | chr3_3:14227235-14227254 | Msa0443470:intron | 45.0% | |
CTTGAGACTAGTGATGCCAA+AGG | - | chr3_3:14227382-14227401 | Msa0443470:CDS | 45.0% | |
TTTAGGCATGTGAGACCAGA+AGG | - | chr3_3:14227406-14227425 | Msa0443470:intron | 45.0% | |
CTTTGCAGTCCTTACTTCCA+AGG | + | chr3_3:14227521-14227540 | None:intergenic | 45.0% | |
CTTGGAAGTAAGGACTGCAA+AGG | - | chr3_3:14227519-14227538 | Msa0443470:CDS | 45.0% | |
! | TATGGTTGGAAGTATGGCTG+TGG | - | chr3_3:14227607-14227626 | Msa0443470:CDS | 45.0% |
AAAACACCCAGAGCTTGTGT+TGG | - | chr3_3:14227690-14227709 | Msa0443470:intron | 45.0% | |
GTGGTTAATCTTGCAAGTGG+TGG | - | chr3_3:14227799-14227818 | Msa0443470:intron | 45.0% | |
GTTAATCTTGCAAGTGGTGG+TGG | - | chr3_3:14227802-14227821 | Msa0443470:intron | 45.0% | |
TGCAGCAATCTCAGGTAGAA+TGG | - | chr3_3:14227892-14227911 | Msa0443470:intron | 45.0% | |
!! | AGGACAAGCCTTTAAAGCGA+AGG | - | chr3_3:14228262-14228281 | Msa0443470:intron | 45.0% |
!! | GCCTTTAAAGCGAAGGTTAC+TGG | - | chr3_3:14228269-14228288 | Msa0443470:intron | 45.0% |
GCCGATTGAAAGATGATCGT+GGG | - | chr3_3:14228295-14228314 | Msa0443470:intron | 45.0% | |
GATAGGAGCGACAGAACAAA+TGG | - | chr3_3:14228333-14228352 | Msa0443470:intron | 45.0% | |
AACATCTGCATCGCAACTTC+TGG | + | chr3_3:14228619-14228638 | None:intergenic | 45.0% | |
! | CCTGATGGATCATACGAAGA+TGG | + | chr3_3:14228655-14228674 | None:intergenic | 45.0% |
CCATCTTCGTATGATCCATC+AGG | - | chr3_3:14228652-14228671 | Msa0443470:intron | 45.0% | |
TGCATGCACTAAGCATTCTG+AGG | + | chr3_3:14228956-14228975 | None:intergenic | 45.0% | |
GTGGTGCAGTTATCAAGACT+TGG | - | chr3_3:14229380-14229399 | Msa0443470:intron | 45.0% | |
CATAGACTATCGGAGCTTGT+AGG | - | chr3_3:14229428-14229447 | Msa0443470:intron | 45.0% | |
! | GCTTGTAGGTTTCACTGGTT+TGG | - | chr3_3:14229442-14229461 | Msa0443470:intron | 45.0% |
!! | CTGGTTTGGCTCATTGAGAT+TGG | - | chr3_3:14229456-14229475 | Msa0443470:intron | 45.0% |
ATTATCCACCAAAACCTGGG+AGG | + | chr3_3:14229698-14229717 | None:intergenic | 45.0% | |
CTTATCCCACTAAGTGGGAT+CGG | + | chr3_3:14229732-14229751 | None:intergenic | 45.0% | |
! | CAAAGCCTTATCCCACTAAG+TGG | + | chr3_3:14229738-14229757 | None:intergenic | 45.0% |
TTTGTGGATGTCAGTGACCT+GGG | - | chr3_3:14229839-14229858 | Msa0443470:intron | 45.0% | |
!! | AGTGACCTGGGTTTTAATCC+AGG | - | chr3_3:14229851-14229870 | Msa0443470:intron | 45.0% |
!! | ACAAAATATTAAAATATTAT+AGG | - | chr3_3:14225766-14225785 | Msa0443470:intron | 5.0% |
ATCCGGACTACCTCAAGTGA+TGG | - | chr3_3:14224123-14224142 | Msa0443470:three_prime_UTR | 50.0% | |
!!! | TTTTTGGGGTTGGCCACTTG+AGG | - | chr3_3:14224549-14224568 | Msa0443470:intron | 50.0% |
TCTCCCCACCTCTTAATGGA+GGG | - | chr3_3:14225030-14225049 | Msa0443470:CDS | 50.0% | |
ACACCCCTCCATTAAGAGGT+GGG | + | chr3_3:14225037-14225056 | None:intergenic | 50.0% | |
CTTGGAGGAATTTGACGTGC+GGG | - | chr3_3:14225660-14225679 | Msa0443470:intron | 50.0% | |
TTGGAGGAATTTGACGTGCG+GGG | - | chr3_3:14225661-14225680 | Msa0443470:intron | 50.0% | |
!! | CCCTGCAGAGAGCATTTGTT+TGG | + | chr3_3:14225745-14225764 | None:intergenic | 50.0% |
ACTGAGGGGCTGTTTGAAAG+CGG | - | chr3_3:14225807-14225826 | Msa0443470:intron | 50.0% | |
CCAGCTGCCAAAGAAGACTT+TGG | + | chr3_3:14225892-14225911 | None:intergenic | 50.0% | |
CCAAAGTCTTCTTTGGCAGC+TGG | - | chr3_3:14225889-14225908 | Msa0443470:CDS | 50.0% | |
AAGTCTTCTTTGGCAGCTGG+GGG | - | chr3_3:14225892-14225911 | Msa0443470:CDS | 50.0% | |
TACCTACGCTCAGCTTCAGA+TGG | + | chr3_3:14226250-14226269 | None:intergenic | 50.0% | |
ATACCACTCCGCATCCTTGT+GGG | + | chr3_3:14226430-14226449 | None:intergenic | 50.0% | |
TATACCACTCCGCATCCTTG+TGG | + | chr3_3:14226431-14226450 | None:intergenic | 50.0% | |
GAATTTAGGCAAGCGTGAGG+AGG | + | chr3_3:14226906-14226925 | None:intergenic | 50.0% | |
TCAGAGGAGGAAACAGATGC+CGG | - | chr3_3:14227019-14227038 | Msa0443470:intron | 50.0% | |
GGCCCTGTAGTAATTATCCG+TGG | - | chr3_3:14227265-14227284 | Msa0443470:intron | 50.0% | |
!! | CTTAGAGGGTGTTGAGCTAC+TGG | - | chr3_3:14227306-14227325 | Msa0443470:intron | 50.0% |
ATGTGAGACCAGAAGGAGCA+AGG | - | chr3_3:14227413-14227432 | Msa0443470:intron | 50.0% | |
TCTTCATGCCTTGCTCCTTC+TGG | + | chr3_3:14227424-14227443 | None:intergenic | 50.0% | |
AGCTAAGTCGGGGTCAGAAT+GGG | - | chr3_3:14227447-14227466 | Msa0443470:intron | 50.0% | |
TCCTTACTTCCAAGGGATCC+AGG | + | chr3_3:14227513-14227532 | None:intergenic | 50.0% | |
TGTAGTGATCCTGATGCTCC+TGG | - | chr3_3:14227855-14227874 | Msa0443470:intron | 50.0% | |
ACCTGAGATTGCTGCATGAC+AGG | + | chr3_3:14227888-14227907 | None:intergenic | 50.0% | |
GGCCGATTGAAAGATGATCG+TGG | - | chr3_3:14228294-14228313 | Msa0443470:intron | 50.0% | |
TTGTTCTGTCGCTCCTATCC+TGG | + | chr3_3:14228332-14228351 | None:intergenic | 50.0% | |
TCATGGGATGGCGAACTATC+AGG | + | chr3_3:14228366-14228385 | None:intergenic | 50.0% | |
ATAGTTCGCCATCCCATGAG+AGG | - | chr3_3:14228367-14228386 | Msa0443470:intron | 50.0% | |
GTTTCCCAACTGCCTCTCAT+GGG | + | chr3_3:14228382-14228401 | None:intergenic | 50.0% | |
AGGCATCAAAACTGGAGGAG+GGG | + | chr3_3:14228466-14228485 | None:intergenic | 50.0% | |
CAGGCATCAAAACTGGAGGA+GGG | + | chr3_3:14228467-14228486 | None:intergenic | 50.0% | |
ACAGGCATCAAAACTGGAGG+AGG | + | chr3_3:14228468-14228487 | None:intergenic | 50.0% | |
GGTACAGGCATCAAAACTGG+AGG | + | chr3_3:14228471-14228490 | None:intergenic | 50.0% | |
CCAGGTACAGGCATCAAAAC+TGG | + | chr3_3:14228474-14228493 | None:intergenic | 50.0% | |
!! | CCAGTTTTGATGCCTGTACC+TGG | - | chr3_3:14228471-14228490 | Msa0443470:CDS | 50.0% |
TCTGGTGGAGCAGGAACAAA+GGG | + | chr3_3:14228601-14228620 | None:intergenic | 50.0% | |
TTCTGGTGGAGCAGGAACAA+AGG | + | chr3_3:14228602-14228621 | None:intergenic | 50.0% | |
ATCTGCATCGCAACTTCTGG+TGG | + | chr3_3:14228616-14228635 | None:intergenic | 50.0% | |
GAACGCATCGTCATTCCTGA+TGG | + | chr3_3:14228670-14228689 | None:intergenic | 50.0% | |
TCAGGAATGACGATGCGTTC+TGG | - | chr3_3:14228670-14228689 | Msa0443470:intron | 50.0% | |
ATGCGTTCTGGTCCTCACAT+AGG | - | chr3_3:14228682-14228701 | Msa0443470:intron | 50.0% | |
TGCGTTCTGGTCCTCACATA+GGG | - | chr3_3:14228683-14228702 | Msa0443470:intron | 50.0% | |
GGGAGGAACAGCAATCATAG+AGG | + | chr3_3:14228716-14228735 | None:intergenic | 50.0% | |
ATAAGTACCTCCGCATCCGT+CGG | + | chr3_3:14228756-14228775 | None:intergenic | 50.0% | |
TGGGTGCTCTCCAGTAGAAT+TGG | - | chr3_3:14229015-14229034 | Msa0443470:intron | 50.0% | |
TCGGAGCTTGTAGGTTTCAC+TGG | - | chr3_3:14229437-14229456 | Msa0443470:intron | 50.0% | |
TTCCCGAGCAAAATGCTACC+TGG | - | chr3_3:14229600-14229619 | Msa0443470:intron | 50.0% | |
! | AGCCAGGTAGCATTTTGCTC+GGG | + | chr3_3:14229605-14229624 | None:intergenic | 50.0% |
! | CAGCCAGGTAGCATTTTGCT+CGG | + | chr3_3:14229606-14229625 | None:intergenic | 50.0% |
!! | AACTACCTCCCAGGTTTTGG+TGG | - | chr3_3:14229690-14229709 | Msa0443470:intron | 50.0% |
CGATCCCACTTAGTGGGATA+AGG | - | chr3_3:14229730-14229749 | Msa0443470:intron | 50.0% | |
GTTTGTGGATGTCAGTGACC+TGG | - | chr3_3:14229838-14229857 | Msa0443470:intron | 50.0% | |
GATTGCGCCTTTGCCTAGTC+CGG | + | chr3_3:14224106-14224125 | None:intergenic | 55.0% | |
! | GACTAGGCAAAGGCGCAATC+CGG | - | chr3_3:14224106-14224125 | Msa0443470:three_prime_UTR | 55.0% |
GGCCATCACTTGAGGTAGTC+CGG | + | chr3_3:14224128-14224147 | None:intergenic | 55.0% | |
TTTCTCTCACGTCCCCTGCA+TGG | - | chr3_3:14224976-14224995 | Msa0443470:intron | 55.0% | |
CTCTCCCCACCTCTTAATGG+AGG | - | chr3_3:14225029-14225048 | Msa0443470:CDS | 55.0% | |
CTCCCCACCTCTTAATGGAG+GGG | - | chr3_3:14225031-14225050 | Msa0443470:CDS | 55.0% | |
CACCCCTCCATTAAGAGGTG+GGG | + | chr3_3:14225036-14225055 | None:intergenic | 55.0% | |
CACACCCCTCCATTAAGAGG+TGG | + | chr3_3:14225038-14225057 | None:intergenic | 55.0% | |
GCAGATCTGGATGCCAATCG+CGG | - | chr3_3:14225261-14225280 | Msa0443470:intron | 55.0% | |
TGGAGGAATTTGACGTGCGG+GGG | - | chr3_3:14225662-14225681 | Msa0443470:intron | 55.0% | |
AGTCTTCTTTGGCAGCTGGG+GGG | - | chr3_3:14225893-14225912 | Msa0443470:CDS | 55.0% | |
GGTTTCAGGCTCTATGGAGG+AGG | - | chr3_3:14225958-14225977 | Msa0443470:intron | 55.0% | |
! | TGCCATCTGAAGCTGAGCGT+AGG | - | chr3_3:14226245-14226264 | Msa0443470:CDS | 55.0% |
ATACCCACAAGGATGCGGAG+TGG | - | chr3_3:14226424-14226443 | Msa0443470:CDS | 55.0% | |
CAAGCGTGAGGAGGAAGAGA+AGG | + | chr3_3:14226897-14226916 | None:intergenic | 55.0% | |
AGCCAGTGAGCCCAATTCAG+AGG | - | chr3_3:14227003-14227022 | Msa0443470:intron | 55.0% | |
CTCCTCTGAATTGGGCTCAC+TGG | + | chr3_3:14227008-14227027 | None:intergenic | 55.0% | |
CAGTGAGCCCAATTCAGAGG+AGG | - | chr3_3:14227006-14227025 | Msa0443470:intron | 55.0% | |
CGATTTCTCTGCTGCTCCGA+AGG | - | chr3_3:14227084-14227103 | Msa0443470:intron | 55.0% | |
GAACTGACAGGGTGAGCCTT+CGG | + | chr3_3:14227103-14227122 | None:intergenic | 55.0% | |
TAAGGCTCGCAGTGGATCTG+TGG | - | chr3_3:14227243-14227262 | Msa0443470:intron | 55.0% | |
AAGGCTCGCAGTGGATCTGT+GGG | - | chr3_3:14227244-14227263 | Msa0443470:intron | 55.0% | |
CAGCTAAGTCGGGGTCAGAA+TGG | - | chr3_3:14227446-14227465 | Msa0443470:intron | 55.0% | |
GCCTGGATCCCTTGGAAGTA+AGG | - | chr3_3:14227509-14227528 | Msa0443470:CDS | 55.0% | |
TGCTGCAGCAGCTGACATGT+TGG | - | chr3_3:14227552-14227571 | Msa0443470:CDS | 55.0% | |
AGTGATCCTGATGCTCCTGG+TGG | - | chr3_3:14227858-14227877 | Msa0443470:intron | 55.0% | |
GCCTGTCATGCAGCAATCTC+AGG | - | chr3_3:14227884-14227903 | Msa0443470:intron | 55.0% | |
ATGCTGCTGTCTATGGGGCA+AGG | - | chr3_3:14228121-14228140 | Msa0443470:intron | 55.0% | |
CCATCCCATGAGAGGCAGTT+GGG | - | chr3_3:14228375-14228394 | Msa0443470:intron | 55.0% | |
GGTTTCCCAACTGCCTCTCA+TGG | + | chr3_3:14228383-14228402 | None:intergenic | 55.0% | |
GGCATCAAAACTGGAGGAGG+GGG | + | chr3_3:14228465-14228484 | None:intergenic | 55.0% | |
TTGATGCCTGTACCTGGTGC+CGG | - | chr3_3:14228477-14228496 | Msa0443470:CDS | 55.0% | |
ATCGCAACTTCTGGTGGAGC+AGG | + | chr3_3:14228610-14228629 | None:intergenic | 55.0% | |
GCGTTCTGGTCCTCACATAG+GGG | - | chr3_3:14228684-14228703 | Msa0443470:intron | 55.0% | |
CGTTCTGGTCCTCACATAGG+GGG | - | chr3_3:14228685-14228704 | Msa0443470:intron | 55.0% | |
GGATCAGGTCTAAAGGTGGG+AGG | + | chr3_3:14228733-14228752 | None:intergenic | 55.0% | |
CGGGGATCAGGTCTAAAGGT+GGG | + | chr3_3:14228736-14228755 | None:intergenic | 55.0% | |
TCGGGGATCAGGTCTAAAGG+TGG | + | chr3_3:14228737-14228756 | None:intergenic | 55.0% | |
CCTTTAGACCTGATCCCCGA+CGG | - | chr3_3:14228737-14228756 | Msa0443470:intron | 55.0% | |
TAAGTACCTCCGCATCCGTC+GGG | + | chr3_3:14228755-14228774 | None:intergenic | 55.0% | |
!! | GCACTAAGCATTCTGAGGCC+AGG | + | chr3_3:14228951-14228970 | None:intergenic | 55.0% |
GTGTCCCCCTGGCTGTTGTT+TGG | - | chr3_3:14225061-14225080 | Msa0443470:CDS | 60.0% | |
GAGGGGCTGTTTGAAAGCGG+TGG | - | chr3_3:14225810-14225829 | Msa0443470:intron | 60.0% | |
GAGGAGGAAACAGATGCCGG+TGG | - | chr3_3:14227022-14227041 | Msa0443470:intron | 60.0% | |
GCAGAGAAGGTTGGACAGCC+TGG | - | chr3_3:14227492-14227511 | Msa0443470:intron | 60.0% | |
GTTGGACAGCCTGGATCCCT+TGG | - | chr3_3:14227501-14227520 | Msa0443470:intron | 60.0% | |
TGCATGACAGGCGTTCCACC+AGG | + | chr3_3:14227876-14227895 | None:intergenic | 60.0% | |
GGAATCGGCGAGACCAGGAT+AGG | - | chr3_3:14228316-14228335 | Msa0443470:intron | 60.0% | |
GCCATCCCATGAGAGGCAGT+TGG | - | chr3_3:14228374-14228393 | Msa0443470:intron | 60.0% | |
CCCAACTGCCTCTCATGGGA+TGG | + | chr3_3:14228378-14228397 | None:intergenic | 60.0% | |
TGATGCCTGTACCTGGTGCC+GGG | - | chr3_3:14228478-14228497 | Msa0443470:CDS | 60.0% | |
AGAGAAACCAACCCGGCACC+AGG | + | chr3_3:14228492-14228511 | None:intergenic | 60.0% | |
AGGGTCCCAGAGGCCTGAAT+AGG | + | chr3_3:14228582-14228601 | None:intergenic | 60.0% | |
GCAGGAACAAAGGGTCCCAG+AGG | + | chr3_3:14228592-14228611 | None:intergenic | 60.0% | |
GAGGCTTGTCCCCCTATGTG+AGG | + | chr3_3:14228697-14228716 | None:intergenic | 60.0% | |
CCGTCGGGGATCAGGTCTAA+AGG | + | chr3_3:14228740-14228759 | None:intergenic | 60.0% | |
AAGTACCTCCGCATCCGTCG+GGG | + | chr3_3:14228754-14228773 | None:intergenic | 60.0% | |
GGGGTGTGTTTGTGTCCCCC+TGG | - | chr3_3:14225050-14225069 | Msa0443470:CDS | 65.0% | |
!! | TGCCAAGTGGGGGTGCTCGA+AGG | - | chr3_3:14225295-14225314 | Msa0443470:CDS | 65.0% |
GACCTTCGAGCACCCCCACT+TGG | + | chr3_3:14225300-14225319 | None:intergenic | 65.0% | |
!! | GGCGTTCCACCAGGAGCATC+AGG | + | chr3_3:14227867-14227886 | None:intergenic | 65.0% |
TCGTGGGAATCGGCGAGACC+AGG | - | chr3_3:14228311-14228330 | Msa0443470:intron | 65.0% | |
ACCAACCCGGCACCAGGTAC+AGG | + | chr3_3:14228486-14228505 | None:intergenic | 65.0% | |
GACCTGATCCCCGACGGATG+CGG | - | chr3_3:14228743-14228762 | Msa0443470:intron | 65.0% | |
TCTTTGGCAGCTGGGGGGCC+TGG | - | chr3_3:14225898-14225917 | Msa0443470:intron | 70.0% | |
CTTTGGCAGCTGGGGGGCCT+GGG | - | chr3_3:14225899-14225918 | Msa0443470:intron | 70.0% | |
TTTGGCAGCTGGGGGGCCTG+GGG | - | chr3_3:14225900-14225919 | Msa0443470:intron | 70.0% | |
! | GCCTGTACCTGGTGCCGGGT+TGG | - | chr3_3:14228482-14228501 | Msa0443470:CDS | 70.0% |
CTCCGCATCCGTCGGGGATC+AGG | + | chr3_3:14228748-14228767 | None:intergenic | 70.0% | |
CTGATCCCCGACGGATGCGG+AGG | - | chr3_3:14228746-14228765 | Msa0443470:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 14223852 | 14229923 | 14223852 | ID=Msa0443470;Name=Msa0443470 |
chr3_3 | mRNA | 14223852 | 14229923 | 14223852 | ID=Msa0443470-mRNA-1;Parent=Msa0443470;Name=Msa0443470-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.72|0.66|0.75|0.81|0.83|12|474|576 |
chr3_3 | exon | 14223852 | 14224386 | 14223852 | ID=Msa0443470-mRNA-1:exon:3200;Parent=Msa0443470-mRNA-1 |
chr3_3 | exon | 14225008 | 14225187 | 14225008 | ID=Msa0443470-mRNA-1:exon:3199;Parent=Msa0443470-mRNA-1 |
chr3_3 | exon | 14225276 | 14225511 | 14225276 | ID=Msa0443470-mRNA-1:exon:3198;Parent=Msa0443470-mRNA-1 |
chr3_3 | exon | 14225870 | 14225915 | 14225870 | ID=Msa0443470-mRNA-1:exon:3197;Parent=Msa0443470-mRNA-1 |
chr3_3 | exon | 14226014 | 14226811 | 14226014 | ID=Msa0443470-mRNA-1:exon:3196;Parent=Msa0443470-mRNA-1 |
chr3_3 | exon | 14226920 | 14226988 | 14226920 | ID=Msa0443470-mRNA-1:exon:3195;Parent=Msa0443470-mRNA-1 |
chr3_3 | exon | 14227139 | 14227186 | 14227139 | ID=Msa0443470-mRNA-1:exon:3194;Parent=Msa0443470-mRNA-1 |
chr3_3 | exon | 14227330 | 14227404 | 14227330 | ID=Msa0443470-mRNA-1:exon:3193;Parent=Msa0443470-mRNA-1 |
chr3_3 | exon | 14227509 | 14227639 | 14227509 | ID=Msa0443470-mRNA-1:exon:3192;Parent=Msa0443470-mRNA-1 |
chr3_3 | exon | 14228360 | 14228381 | 14228360 | ID=Msa0443470-mRNA-1:exon:3191;Parent=Msa0443470-mRNA-1 |
chr3_3 | exon | 14228459 | 14228510 | 14228459 | ID=Msa0443470-mRNA-1:exon:3190;Parent=Msa0443470-mRNA-1 |
chr3_3 | exon | 14229911 | 14229923 | 14229911 | ID=Msa0443470-mRNA-1:exon:3189;Parent=Msa0443470-mRNA-1 |
chr3_3 | CDS | 14229911 | 14229923 | 14229911 | ID=Msa0443470-mRNA-1:cds;Parent=Msa0443470-mRNA-1 |
chr3_3 | CDS | 14228459 | 14228510 | 14228459 | ID=Msa0443470-mRNA-1:cds;Parent=Msa0443470-mRNA-1 |
chr3_3 | CDS | 14228360 | 14228381 | 14228360 | ID=Msa0443470-mRNA-1:cds;Parent=Msa0443470-mRNA-1 |
chr3_3 | CDS | 14227509 | 14227639 | 14227509 | ID=Msa0443470-mRNA-1:cds;Parent=Msa0443470-mRNA-1 |
chr3_3 | CDS | 14227330 | 14227404 | 14227330 | ID=Msa0443470-mRNA-1:cds;Parent=Msa0443470-mRNA-1 |
chr3_3 | CDS | 14227139 | 14227186 | 14227139 | ID=Msa0443470-mRNA-1:cds;Parent=Msa0443470-mRNA-1 |
chr3_3 | CDS | 14226920 | 14226988 | 14226920 | ID=Msa0443470-mRNA-1:cds;Parent=Msa0443470-mRNA-1 |
chr3_3 | CDS | 14226014 | 14226811 | 14226014 | ID=Msa0443470-mRNA-1:cds;Parent=Msa0443470-mRNA-1 |
chr3_3 | CDS | 14225870 | 14225915 | 14225870 | ID=Msa0443470-mRNA-1:cds;Parent=Msa0443470-mRNA-1 |
chr3_3 | CDS | 14225276 | 14225511 | 14225276 | ID=Msa0443470-mRNA-1:cds;Parent=Msa0443470-mRNA-1 |
chr3_3 | CDS | 14225008 | 14225187 | 14225008 | ID=Msa0443470-mRNA-1:cds;Parent=Msa0443470-mRNA-1 |
chr3_3 | CDS | 14224326 | 14224386 | 14224326 | ID=Msa0443470-mRNA-1:cds;Parent=Msa0443470-mRNA-1 |
chr3_3 | three_prime_UTR | 14223852 | 14224325 | 14223852 | ID=Msa0443470-mRNA-1:three_prime_utr;Parent=Msa0443470-mRNA-1 |
Gene Sequence |
Protein sequence |