Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0444920 | Msa0970320 | 0.801891 | 7.270798e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444920 | MtrunA17_Chr4g0035001 | 51.786 | 56 | 26 | 1 | 1 | 55 | 1 | 56 | 3.63e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTTGGTGGACTTGCTT+GGG | 0.330507 | 3_3:-18504288 | Msa0444920:CDS |
| ACTATCATATATTAAGCTTT+CGG | 0.359558 | 3_3:+18502920 | None:intergenic |
| TCCCATGTCAAGGTAGAAAC+TGG | 0.418502 | 3_3:-18503028 | Msa0444920:CDS |
| GCTTTGTTGGTGGACTTGCT+TGG | 0.424231 | 3_3:-18504289 | Msa0444920:CDS |
| GTTGAATACCGATGCTTTGT+TGG | 0.464495 | 3_3:-18504302 | Msa0444920:CDS |
| CTCAAGAGCTTTGTTGTCGG+TGG | 0.472358 | 3_3:+18504265 | Msa0444930:CDS |
| TTTCTCAAGAGCTTTGTTGT+CGG | 0.475493 | 3_3:+18504262 | Msa0444930:CDS |
| TCAAGGTAGAAACTGGTGTC+AGG | 0.522341 | 3_3:-18503021 | Msa0444920:intron |
| CATTTAAGAAGAATCTCAAC+TGG | 0.523080 | 3_3:-18503078 | Msa0444920:intron |
| CACCAGTTTCTACCTTGACA+TGG | 0.527293 | 3_3:+18503026 | None:intergenic |
| GAATACCGATGCTTTGTTGG+TGG | 0.577401 | 3_3:-18504299 | Msa0444920:CDS |
| TCGGTATTCAACTTCCGCCA+TGG | 0.595134 | 3_3:+18504313 | Msa0444930:CDS |
| ACCAGTTTCTACCTTGACAT+GGG | 0.617637 | 3_3:+18503027 | None:intergenic |
| CAAGTCCACCAACAAAGCAT+CGG | 0.629529 | 3_3:+18504294 | Msa0444930:CDS |
| TCATGATTCATCCCATGTCA+AGG | 0.638032 | 3_3:-18503038 | Msa0444920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTGGAAAATAAA+GGG | + | chr3_3:18503709-18503728 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGGAAAATAA+AGG | + | chr3_3:18503710-18503729 | None:intergenic | 10.0% |
| !!! | TTTATTTTCCAAAAAAAAAA+AGG | - | chr3_3:18503709-18503728 | Msa0444920:intron | 10.0% |
| !!! | TTTTTTTTTTGGAAAATAAA+GGG | + | chr3_3:18503709-18503728 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGGAAAATAA+AGG | + | chr3_3:18503710-18503729 | None:intergenic | 10.0% |
| !!! | TTTATTTTCCAAAAAAAAAA+AGG | - | chr3_3:18503709-18503728 | Msa0444920:intron | 10.0% |
| !!! | AATAAACACCTTTTTTTTTT+TGG | + | chr3_3:18503720-18503739 | None:intergenic | 15.0% |
| !!! | AATAAACACCTTTTTTTTTT+TGG | + | chr3_3:18503720-18503739 | None:intergenic | 15.0% |
| !!! | GTTTGATAATAAAACAACTA+GGG | + | chr3_3:18503292-18503311 | None:intergenic | 20.0% |
| !!! | AGTTTGATAATAAAACAACT+AGG | + | chr3_3:18503293-18503312 | None:intergenic | 20.0% |
| !! | TATGTTAATTTCATGTTTAC+TGG | - | chr3_3:18503356-18503375 | Msa0444920:intron | 20.0% |
| !! | TGAACTAAACTAAATTGAAT+TGG | - | chr3_3:18503463-18503482 | Msa0444920:intron | 20.0% |
| !! | GAACTAAACTAAATTGAATT+GGG | - | chr3_3:18503464-18503483 | Msa0444920:intron | 20.0% |
| !! | AACTAAACTAAATTGAATTG+GGG | - | chr3_3:18503465-18503484 | Msa0444920:intron | 20.0% |
| !! | TTACTTGAAGAATTACATAA+TGG | + | chr3_3:18503683-18503702 | None:intergenic | 20.0% |
| !! | ATTATGTAATTCTTCAAGTA+AGG | - | chr3_3:18503682-18503701 | Msa0444920:intron | 20.0% |
| !!! | AAAAAAAAGGTGTTTATTTG+TGG | - | chr3_3:18503722-18503741 | Msa0444920:intron | 20.0% |
| !!! | ATAGCTTGATTAAATTTTGT+TGG | - | chr3_3:18504021-18504040 | Msa0444920:intron | 20.0% |
| !!! | ATTTTACAACAATGAGTTAT+TGG | - | chr3_3:18504126-18504145 | Msa0444920:intron | 20.0% |
| !!! | GTTTGATAATAAAACAACTA+GGG | + | chr3_3:18503292-18503311 | None:intergenic | 20.0% |
| !!! | AGTTTGATAATAAAACAACT+AGG | + | chr3_3:18503293-18503312 | None:intergenic | 20.0% |
| !! | TATGTTAATTTCATGTTTAC+TGG | - | chr3_3:18503356-18503375 | Msa0444920:intron | 20.0% |
| !! | TGAACTAAACTAAATTGAAT+TGG | - | chr3_3:18503463-18503482 | Msa0444920:intron | 20.0% |
| !! | GAACTAAACTAAATTGAATT+GGG | - | chr3_3:18503464-18503483 | Msa0444920:intron | 20.0% |
| !! | AACTAAACTAAATTGAATTG+GGG | - | chr3_3:18503465-18503484 | Msa0444920:intron | 20.0% |
| !! | TTACTTGAAGAATTACATAA+TGG | + | chr3_3:18503683-18503702 | None:intergenic | 20.0% |
| !! | ATTATGTAATTCTTCAAGTA+AGG | - | chr3_3:18503682-18503701 | Msa0444920:intron | 20.0% |
| !!! | AAAAAAAAGGTGTTTATTTG+TGG | - | chr3_3:18503722-18503741 | Msa0444920:intron | 20.0% |
| !!! | ATAGCTTGATTAAATTTTGT+TGG | - | chr3_3:18504021-18504040 | Msa0444920:intron | 20.0% |
| !!! | ATTTTACAACAATGAGTTAT+TGG | - | chr3_3:18504126-18504145 | Msa0444920:intron | 20.0% |
| ! | TGAAAAATAGAGGAAAAGAA+TGG | + | chr3_3:18503123-18503142 | None:intergenic | 25.0% |
| ! | TGACAATTGATGAAAAATAG+AGG | + | chr3_3:18503133-18503152 | None:intergenic | 25.0% |
| ! | AACTATTCATTCTAATTCCT+TGG | - | chr3_3:18503309-18503328 | Msa0444920:intron | 25.0% |
| ! | CTTCAAATTATTGTTAACTG+AGG | - | chr3_3:18503415-18503434 | Msa0444920:intron | 25.0% |
| ! | TAAATTGAATTGGGGAAATA+GGG | - | chr3_3:18503473-18503492 | Msa0444920:intron | 25.0% |
| ! | AGAGAAATGGTTGAATAAAT+TGG | - | chr3_3:18503586-18503605 | Msa0444920:intron | 25.0% |
| ! | ATATTCAACTGTTCAATGTT+TGG | - | chr3_3:18503789-18503808 | Msa0444920:intron | 25.0% |
| !! | TCTTGTTAGTTCTTTGAATT+TGG | - | chr3_3:18503823-18503842 | Msa0444920:intron | 25.0% |
| !!! | TCGGTGTTTTATTTTTGTTT+CGG | - | chr3_3:18503859-18503878 | Msa0444920:intron | 25.0% |
| ! | AAAAATTGTAGCATACACTA+AGG | + | chr3_3:18503991-18504010 | None:intergenic | 25.0% |
| !!! | TTTTGTTATGACATAACAGA+TGG | - | chr3_3:18504081-18504100 | Msa0444920:intron | 25.0% |
| ! | AACAATGAGTTATTGGAAAA+TGG | - | chr3_3:18504133-18504152 | Msa0444920:intron | 25.0% |
| ! | AAATACAACAATCACTACAA+AGG | + | chr3_3:18504245-18504264 | Msa0444930:CDS | 25.0% |
| ! | TGAAAAATAGAGGAAAAGAA+TGG | + | chr3_3:18503123-18503142 | None:intergenic | 25.0% |
| ! | TGACAATTGATGAAAAATAG+AGG | + | chr3_3:18503133-18503152 | None:intergenic | 25.0% |
| ! | AACTATTCATTCTAATTCCT+TGG | - | chr3_3:18503309-18503328 | Msa0444920:intron | 25.0% |
| ! | CTTCAAATTATTGTTAACTG+AGG | - | chr3_3:18503415-18503434 | Msa0444920:intron | 25.0% |
| ! | TAAATTGAATTGGGGAAATA+GGG | - | chr3_3:18503473-18503492 | Msa0444920:intron | 25.0% |
| ! | AGAGAAATGGTTGAATAAAT+TGG | - | chr3_3:18503586-18503605 | Msa0444920:intron | 25.0% |
| ! | ATATTCAACTGTTCAATGTT+TGG | - | chr3_3:18503789-18503808 | Msa0444920:intron | 25.0% |
| !! | TCTTGTTAGTTCTTTGAATT+TGG | - | chr3_3:18503823-18503842 | Msa0444920:intron | 25.0% |
| !!! | TCGGTGTTTTATTTTTGTTT+CGG | - | chr3_3:18503859-18503878 | Msa0444920:intron | 25.0% |
| ! | AAAAATTGTAGCATACACTA+AGG | + | chr3_3:18503991-18504010 | None:intergenic | 25.0% |
| !!! | TTTTGTTATGACATAACAGA+TGG | - | chr3_3:18504081-18504100 | Msa0444920:intron | 25.0% |
| ! | AACAATGAGTTATTGGAAAA+TGG | - | chr3_3:18504133-18504152 | Msa0444920:intron | 25.0% |
| ! | AAATACAACAATCACTACAA+AGG | + | chr3_3:18504245-18504264 | Msa0444930:CDS | 25.0% |
| !!! | AGAAAGCGTTTTTTTTCCTT+TGG | - | chr3_3:18502991-18503010 | Msa0444920:intron | 30.0% |
| GATTAACAGTTATGGATTTG+GGG | + | chr3_3:18503208-18503227 | None:intergenic | 30.0% | |
| CGATTAACAGTTATGGATTT+GGG | + | chr3_3:18503209-18503228 | None:intergenic | 30.0% | |
| TCGATTAACAGTTATGGATT+TGG | + | chr3_3:18503210-18503229 | None:intergenic | 30.0% | |
| GAAAGAATCATAAGAATCCA+AGG | + | chr3_3:18503329-18503348 | None:intergenic | 30.0% | |
| CTAAATTGAATTGGGGAAAT+AGG | - | chr3_3:18503472-18503491 | Msa0444920:intron | 30.0% | |
| AAGAAGTTCAACATCATCAT+GGG | - | chr3_3:18503533-18503552 | Msa0444920:intron | 30.0% | |
| ! | TTTTCTCCTTCTGAGTAAAT+AGG | - | chr3_3:18503640-18503659 | Msa0444920:intron | 30.0% |
| GATTTACCTATTTACTCAGA+AGG | + | chr3_3:18503649-18503668 | None:intergenic | 30.0% | |
| AGGTGTTTATTTGTGGAATT+AGG | - | chr3_3:18503729-18503748 | Msa0444920:intron | 30.0% | |
| ATTTGGTATAATTGCAGAGT+CGG | - | chr3_3:18503840-18503859 | Msa0444920:intron | 30.0% | |
| !!! | CGGTGTTTTATTTTTGTTTC+GGG | - | chr3_3:18503860-18503879 | Msa0444920:intron | 30.0% |
| CATTTAAGAAGAATCTCAAC+TGG | - | chr3_3:18504157-18504176 | Msa0444920:intron | 30.0% | |
| !!! | AGAAAGCGTTTTTTTTCCTT+TGG | - | chr3_3:18502991-18503010 | Msa0444920:intron | 30.0% |
| GATTAACAGTTATGGATTTG+GGG | + | chr3_3:18503208-18503227 | None:intergenic | 30.0% | |
| CGATTAACAGTTATGGATTT+GGG | + | chr3_3:18503209-18503228 | None:intergenic | 30.0% | |
| TCGATTAACAGTTATGGATT+TGG | + | chr3_3:18503210-18503229 | None:intergenic | 30.0% | |
| GAAAGAATCATAAGAATCCA+AGG | + | chr3_3:18503329-18503348 | None:intergenic | 30.0% | |
| CTAAATTGAATTGGGGAAAT+AGG | - | chr3_3:18503472-18503491 | Msa0444920:intron | 30.0% | |
| AAGAAGTTCAACATCATCAT+GGG | - | chr3_3:18503533-18503552 | Msa0444920:intron | 30.0% | |
| ! | TTTTCTCCTTCTGAGTAAAT+AGG | - | chr3_3:18503640-18503659 | Msa0444920:intron | 30.0% |
| GATTTACCTATTTACTCAGA+AGG | + | chr3_3:18503649-18503668 | None:intergenic | 30.0% | |
| AGGTGTTTATTTGTGGAATT+AGG | - | chr3_3:18503729-18503748 | Msa0444920:intron | 30.0% | |
| ATTTGGTATAATTGCAGAGT+CGG | - | chr3_3:18503840-18503859 | Msa0444920:intron | 30.0% | |
| !!! | CGGTGTTTTATTTTTGTTTC+GGG | - | chr3_3:18503860-18503879 | Msa0444920:intron | 30.0% |
| CATTTAAGAAGAATCTCAAC+TGG | - | chr3_3:18504157-18504176 | Msa0444920:intron | 30.0% | |
| !! | TTTCTCAAGAGCTTTGTTGT+CGG | + | chr3_3:18502976-18502995 | None:intergenic | 35.0% |
| CTGCAATCGATTAACAGTTA+TGG | + | chr3_3:18503216-18503235 | None:intergenic | 35.0% | |
| GAAGAAGTTCAACATCATCA+TGG | - | chr3_3:18503532-18503551 | Msa0444920:intron | 35.0% | |
| !! | TCTGCTTTAGGAAAGAGAAA+TGG | - | chr3_3:18503573-18503592 | Msa0444920:intron | 35.0% |
| CATAAGGTTGTTTGCTTGTA+AGG | - | chr3_3:18503898-18503917 | Msa0444920:intron | 35.0% | |
| !! | TTTCTCAAGAGCTTTGTTGT+CGG | + | chr3_3:18502976-18502995 | None:intergenic | 35.0% |
| CTGCAATCGATTAACAGTTA+TGG | + | chr3_3:18503216-18503235 | None:intergenic | 35.0% | |
| GAAGAAGTTCAACATCATCA+TGG | - | chr3_3:18503532-18503551 | Msa0444920:intron | 35.0% | |
| !! | TCTGCTTTAGGAAAGAGAAA+TGG | - | chr3_3:18503573-18503592 | Msa0444920:intron | 35.0% |
| CATAAGGTTGTTTGCTTGTA+AGG | - | chr3_3:18503898-18503917 | Msa0444920:intron | 35.0% | |
| GTTGAATACCGATGCTTTGT+TGG | - | chr3_3:18502933-18502952 | Msa0444920:CDS | 40.0% | |
| TTTCCGATCTCAGCAACAAA+CGG | + | chr3_3:18503038-18503057 | None:intergenic | 40.0% | |
| ATCGGAAATCTGACACGATT+CGG | - | chr3_3:18503050-18503069 | Msa0444920:CDS | 40.0% | |
| ! | AATCTGACACGATTCGGATT+TGG | - | chr3_3:18503056-18503075 | Msa0444920:CDS | 40.0% |
| TAACAGCTATGAAGCGAGAA+AGG | + | chr3_3:18503242-18503261 | None:intergenic | 40.0% | |
| !!! | CGATTCCAATTTTGCTGTTG+TGG | - | chr3_3:18503264-18503283 | Msa0444920:intron | 40.0% |
| ! | TACTGGTTGATGTCAGCATT+TGG | - | chr3_3:18503373-18503392 | Msa0444920:intron | 40.0% |
| GAATTGGGGAAATAGGGTTT+AGG | - | chr3_3:18503479-18503498 | Msa0444920:intron | 40.0% | |
| CATCTATTGCATTCGTAGCA+TGG | - | chr3_3:18503946-18503965 | Msa0444920:intron | 40.0% | |
| TAGCATGGTGGCTGTTTATT+TGG | - | chr3_3:18503961-18503980 | Msa0444920:intron | 40.0% | |
| TCATGATTCATCCCATGTCA+AGG | - | chr3_3:18504197-18504216 | Msa0444920:intron | 40.0% | |
| ACCAGTTTCTACCTTGACAT+GGG | + | chr3_3:18504211-18504230 | Msa0444930:CDS | 40.0% | |
| GTTGAATACCGATGCTTTGT+TGG | - | chr3_3:18502933-18502952 | Msa0444920:CDS | 40.0% | |
| TTTCCGATCTCAGCAACAAA+CGG | + | chr3_3:18503038-18503057 | None:intergenic | 40.0% | |
| ATCGGAAATCTGACACGATT+CGG | - | chr3_3:18503050-18503069 | Msa0444920:CDS | 40.0% | |
| ! | AATCTGACACGATTCGGATT+TGG | - | chr3_3:18503056-18503075 | Msa0444920:CDS | 40.0% |
| TAACAGCTATGAAGCGAGAA+AGG | + | chr3_3:18503242-18503261 | None:intergenic | 40.0% | |
| !!! | CGATTCCAATTTTGCTGTTG+TGG | - | chr3_3:18503264-18503283 | Msa0444920:intron | 40.0% |
| ! | TACTGGTTGATGTCAGCATT+TGG | - | chr3_3:18503373-18503392 | Msa0444920:intron | 40.0% |
| GAATTGGGGAAATAGGGTTT+AGG | - | chr3_3:18503479-18503498 | Msa0444920:intron | 40.0% | |
| CATCTATTGCATTCGTAGCA+TGG | - | chr3_3:18503946-18503965 | Msa0444920:intron | 40.0% | |
| TAGCATGGTGGCTGTTTATT+TGG | - | chr3_3:18503961-18503980 | Msa0444920:intron | 40.0% | |
| TCATGATTCATCCCATGTCA+AGG | - | chr3_3:18504197-18504216 | Msa0444920:intron | 40.0% | |
| ACCAGTTTCTACCTTGACAT+GGG | + | chr3_3:18504211-18504230 | Msa0444930:CDS | 40.0% | |
| ! | GAATACCGATGCTTTGTTGG+TGG | - | chr3_3:18502936-18502955 | Msa0444920:CDS | 45.0% |
| CAAGTCCACCAACAAAGCAT+CGG | + | chr3_3:18502944-18502963 | None:intergenic | 45.0% | |
| !! | CTTTGTTGGTGGACTTGCTT+GGG | - | chr3_3:18502947-18502966 | Msa0444920:CDS | 45.0% |
| CGATTCGACGATTTCACCAA+AGG | + | chr3_3:18503010-18503029 | None:intergenic | 45.0% | |
| TGGTGAAATCGTCGAATCGA+AGG | - | chr3_3:18503011-18503030 | Msa0444920:intron | 45.0% | |
| GGGATCCACAACAGCAAAAT+TGG | + | chr3_3:18503272-18503291 | None:intergenic | 45.0% | |
| TTGGGGAAATAGGGTTTAGG+AGG | - | chr3_3:18503482-18503501 | Msa0444920:intron | 45.0% | |
| TGGGGAAATAGGGTTTAGGA+GGG | - | chr3_3:18503483-18503502 | Msa0444920:intron | 45.0% | |
| AAAGCAGACACTGAGGTTGT+CGG | + | chr3_3:18503561-18503580 | None:intergenic | 45.0% | |
| ACAACCTCAGTGTCTGCTTT+AGG | - | chr3_3:18503561-18503580 | Msa0444920:intron | 45.0% | |
| CTTTCCTAAAGCAGACACTG+AGG | + | chr3_3:18503568-18503587 | None:intergenic | 45.0% | |
| !! | GTGTGACTGTTGATGGCATA+AGG | - | chr3_3:18503882-18503901 | Msa0444920:intron | 45.0% |
| CTATTGCATTCGTAGCATGG+TGG | - | chr3_3:18503949-18503968 | Msa0444920:intron | 45.0% | |
| TCCCATGTCAAGGTAGAAAC+TGG | - | chr3_3:18504207-18504226 | Msa0444920:intron | 45.0% | |
| CACCAGTTTCTACCTTGACA+TGG | + | chr3_3:18504212-18504231 | Msa0444930:CDS | 45.0% | |
| TCAAGGTAGAAACTGGTGTC+AGG | - | chr3_3:18504214-18504233 | Msa0444920:intron | 45.0% | |
| ! | GAATACCGATGCTTTGTTGG+TGG | - | chr3_3:18502936-18502955 | Msa0444920:CDS | 45.0% |
| CAAGTCCACCAACAAAGCAT+CGG | + | chr3_3:18502944-18502963 | None:intergenic | 45.0% | |
| !! | CTTTGTTGGTGGACTTGCTT+GGG | - | chr3_3:18502947-18502966 | Msa0444920:CDS | 45.0% |
| CGATTCGACGATTTCACCAA+AGG | + | chr3_3:18503010-18503029 | None:intergenic | 45.0% | |
| TGGTGAAATCGTCGAATCGA+AGG | - | chr3_3:18503011-18503030 | Msa0444920:intron | 45.0% | |
| GGGATCCACAACAGCAAAAT+TGG | + | chr3_3:18503272-18503291 | None:intergenic | 45.0% | |
| TTGGGGAAATAGGGTTTAGG+AGG | - | chr3_3:18503482-18503501 | Msa0444920:intron | 45.0% | |
| TGGGGAAATAGGGTTTAGGA+GGG | - | chr3_3:18503483-18503502 | Msa0444920:intron | 45.0% | |
| AAAGCAGACACTGAGGTTGT+CGG | + | chr3_3:18503561-18503580 | None:intergenic | 45.0% | |
| ACAACCTCAGTGTCTGCTTT+AGG | - | chr3_3:18503561-18503580 | Msa0444920:intron | 45.0% | |
| CTTTCCTAAAGCAGACACTG+AGG | + | chr3_3:18503568-18503587 | None:intergenic | 45.0% | |
| !! | GTGTGACTGTTGATGGCATA+AGG | - | chr3_3:18503882-18503901 | Msa0444920:intron | 45.0% |
| CTATTGCATTCGTAGCATGG+TGG | - | chr3_3:18503949-18503968 | Msa0444920:intron | 45.0% | |
| TCCCATGTCAAGGTAGAAAC+TGG | - | chr3_3:18504207-18504226 | Msa0444920:intron | 45.0% | |
| CACCAGTTTCTACCTTGACA+TGG | + | chr3_3:18504212-18504231 | Msa0444930:CDS | 45.0% | |
| TCAAGGTAGAAACTGGTGTC+AGG | - | chr3_3:18504214-18504233 | Msa0444920:intron | 45.0% | |
| !! | GCTTTGTTGGTGGACTTGCT+TGG | - | chr3_3:18502946-18502965 | Msa0444920:CDS | 50.0% |
| !! | CTCAAGAGCTTTGTTGTCGG+TGG | + | chr3_3:18502973-18502992 | None:intergenic | 50.0% |
| ! | GGTCCGTTTGTTGCTGAGAT+CGG | - | chr3_3:18503032-18503051 | Msa0444920:CDS | 50.0% |
| GGTGACGTGATGATACCATG+TGG | - | chr3_3:18503504-18503523 | Msa0444920:intron | 50.0% | |
| GACGTGATGATACCATGTGG+AGG | - | chr3_3:18503507-18503526 | Msa0444920:intron | 50.0% | |
| GTGATGATACCATGTGGAGG+AGG | - | chr3_3:18503510-18503529 | Msa0444920:intron | 50.0% | |
| GAACTTCTTCCTCCTCCACA+TGG | + | chr3_3:18503522-18503541 | None:intergenic | 50.0% | |
| ! | GTTTCGGGTGTGACTGTTGA+TGG | - | chr3_3:18503875-18503894 | Msa0444920:intron | 50.0% |
| !! | GCTTTGTTGGTGGACTTGCT+TGG | - | chr3_3:18502946-18502965 | Msa0444920:CDS | 50.0% |
| !! | CTCAAGAGCTTTGTTGTCGG+TGG | + | chr3_3:18502973-18502992 | None:intergenic | 50.0% |
| ! | GGTCCGTTTGTTGCTGAGAT+CGG | - | chr3_3:18503032-18503051 | Msa0444920:CDS | 50.0% |
| GGTGACGTGATGATACCATG+TGG | - | chr3_3:18503504-18503523 | Msa0444920:intron | 50.0% | |
| GACGTGATGATACCATGTGG+AGG | - | chr3_3:18503507-18503526 | Msa0444920:intron | 50.0% | |
| GTGATGATACCATGTGGAGG+AGG | - | chr3_3:18503510-18503529 | Msa0444920:intron | 50.0% | |
| GAACTTCTTCCTCCTCCACA+TGG | + | chr3_3:18503522-18503541 | None:intergenic | 50.0% | |
| ! | GTTTCGGGTGTGACTGTTGA+TGG | - | chr3_3:18503875-18503894 | Msa0444920:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 18502924 | 18504333 | 18502924 | ID=Msa0444920;Name=Msa0444920 |
| chr3_3 | mRNA | 18502924 | 18504333 | 18502924 | ID=Msa0444920-mRNA-1;Parent=Msa0444920;Name=Msa0444920-mRNA-1;_AED=0.64;_eAED=0.85;_QI=0|0|0|0.8|1|1|5|0|70 |
| chr3_3 | exon | 18504260 | 18504333 | 18504260 | ID=Msa0444920-mRNA-1:exon:3935;Parent=Msa0444920-mRNA-1 |
| chr3_3 | exon | 18503394 | 18503400 | 18503394 | ID=Msa0444920-mRNA-1:exon:3934;Parent=Msa0444920-mRNA-1 |
| chr3_3 | exon | 18503152 | 18503157 | 18503152 | ID=Msa0444920-mRNA-1:exon:3933;Parent=Msa0444920-mRNA-1 |
| chr3_3 | exon | 18503022 | 18503089 | 18503022 | ID=Msa0444920-mRNA-1:exon:3932;Parent=Msa0444920-mRNA-1 |
| chr3_3 | exon | 18502924 | 18502981 | 18502924 | ID=Msa0444920-mRNA-1:exon:3931;Parent=Msa0444920-mRNA-1 |
| chr3_3 | CDS | 18504260 | 18504333 | 18504260 | ID=Msa0444920-mRNA-1:cds;Parent=Msa0444920-mRNA-1 |
| chr3_3 | CDS | 18503394 | 18503400 | 18503394 | ID=Msa0444920-mRNA-1:cds;Parent=Msa0444920-mRNA-1 |
| chr3_3 | CDS | 18503152 | 18503157 | 18503152 | ID=Msa0444920-mRNA-1:cds;Parent=Msa0444920-mRNA-1 |
| chr3_3 | CDS | 18503022 | 18503089 | 18503022 | ID=Msa0444920-mRNA-1:cds;Parent=Msa0444920-mRNA-1 |
| chr3_3 | CDS | 18502924 | 18502981 | 18502924 | ID=Msa0444920-mRNA-1:cds;Parent=Msa0444920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
