AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0970320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970320 MtrunA17_Chr6g0449281 98.496 665 10 0 1 665 251 915 0.0 1336
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970320 AT3G27530.1 63.262 656 235 4 1 651 249 903 0.0 834

Find 148 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATTCTCACTACAATTT+TGG 0.103699 6_4:-1784686 Msa0970320:CDS
TCCCTTTAGTAGCAATTTAA+TGG 0.167600 6_4:+1788024 None:intergenic
CTCATGGAATGAATGATTTA+TGG 0.198357 6_4:+1786799 None:intergenic
GATATAATAAGTCAGAAAAT+TGG 0.214697 6_4:-1784877 Msa0970320:CDS
CTCTTCTGCTCTATTTCTTC+TGG 0.216042 6_4:+1784565 None:intergenic
AGTTGCCTCGGATTCAATTT+TGG 0.217310 6_4:+1783764 None:intergenic
ATTTGCGAGAAAGAAATTTA+AGG 0.224738 6_4:-1783171 Msa0970320:three_prime_UTR
GCATCGAATGGTGAAATATT+TGG 0.231055 6_4:-1785181 Msa0970320:CDS
TGGATTAGACTTTCCATCTT+TGG 0.240722 6_4:+1785137 None:intergenic
TGTACAGCTAACTCAAATTA+TGG 0.245262 6_4:-1783343 Msa0970320:three_prime_UTR
GAGGATGTTCATATGTCTTT+TGG 0.246476 6_4:-1786776 Msa0970320:CDS
TGTTCTATCTCATATATTAA+AGG 0.274403 6_4:-1786413 Msa0970320:CDS
CTCTACGGAGTGTCTCTATT+TGG 0.276400 6_4:+1783835 None:intergenic
TGTCAGAAACAGTTTGTATA+AGG 0.279252 6_4:-1784981 Msa0970320:CDS
CTTCTTGCTAGCAAAGTTCT+TGG 0.282156 6_4:-1787173 Msa0970320:CDS
TTATTCTGAGTATAGAATTC+AGG 0.299006 6_4:+1787126 None:intergenic
AATGAATGATTTATGGAATA+TGG 0.305224 6_4:+1786806 None:intergenic
TCCAAAATTGTAGTGAGAAT+TGG 0.310219 6_4:+1784685 None:intergenic
ATCTCCAAGAAGCATCTAAA+AGG 0.329364 6_4:-1783812 Msa0970320:CDS
ATTAGGCATTGAGATGTATT+GGG 0.331445 6_4:-1787229 Msa0970320:intron
CTTCAAGACACAGTTCTTGC+TGG 0.340537 6_4:-1783275 Msa0970320:three_prime_UTR
TGTATTGGGGATTTAATTGC+TGG 0.343320 6_4:-1787215 Msa0970320:CDS
GGAGGTTCTGAGGCTGATCC+TGG 0.348630 6_4:-1788004 Msa0970320:CDS
CTGGACAGTATGTTGATATT+AGG 0.353105 6_4:-1787832 Msa0970320:CDS
CATTAGGCATTGAGATGTAT+TGG 0.357978 6_4:-1787230 Msa0970320:intron
CAGGATCTTGTTATTCGAAA+TGG 0.358756 6_4:-1783936 Msa0970320:CDS
TTCTTTCTCGCAAATTTGAT+TGG 0.365084 6_4:+1783179 None:intergenic
AGGAAGCAGTGCACTGCATT+GGG 0.369828 6_4:+1785051 None:intergenic
GTCAGAAACAGTTTGTATAA+GGG 0.393928 6_4:-1784980 Msa0970320:CDS
TAGTGCTAGGTTGTTGGAGT+TGG 0.397357 6_4:-1783490 Msa0970320:CDS
ACCATTAAATTGCTACTAAA+GGG 0.405073 6_4:-1788025 Msa0970320:CDS
ACCGCACAGCGAACTGCAAC+AGG 0.405621 6_4:+1787790 None:intergenic
ATATAATAAGTCAGAAAATT+GGG 0.409325 6_4:-1784876 Msa0970320:CDS
AAATAAGACAGCTCTGGTTC+AGG 0.411566 6_4:-1787960 Msa0970320:intron
AACATACCCTTTCCTTGCAT+TGG 0.414968 6_4:+1786383 None:intergenic
AACCATTAAATTGCTACTAA+AGG 0.420583 6_4:-1788026 Msa0970320:CDS
TTCACCATTCGATGCATTAG+TGG 0.421258 6_4:+1785189 None:intergenic
CACTTACTCTTTGCTCAGAC+TGG 0.421800 6_4:+1783874 None:intergenic
AGTGCTAGGTTGTTGGAGTT+GGG 0.430453 6_4:-1783489 Msa0970320:CDS
CTTCTGGCACTACTGTTACC+TGG 0.435728 6_4:+1784581 None:intergenic
AGAAGGACCCTCAACATTCC+CGG 0.438413 6_4:-1783625 Msa0970320:CDS
TAGACTTAGTGCTAGGTTGT+TGG 0.440436 6_4:-1783496 Msa0970320:CDS
CTATTACACGGTCTTACGTT+GGG 0.442372 6_4:-1786571 Msa0970320:CDS
TGCAGCTCCTAATGATTGCA+TGG 0.452764 6_4:+1785215 None:intergenic
GAGGCACCCATGCAATCATT+AGG 0.454933 6_4:-1785222 Msa0970320:CDS
CAGCTAACTCAAATTATGGT+TGG 0.462210 6_4:-1783339 Msa0970320:three_prime_UTR
CTTTCACCTCATTCTCCAGT+TGG 0.464880 6_4:+1783658 None:intergenic
TGGTACATTGGCCGAGGACC+TGG 0.465456 6_4:-1783916 Msa0970320:CDS
TAGGAAGCAGTGCACTGCAT+TGG 0.468081 6_4:+1785050 None:intergenic
CAGTCTGAGCAAAGAGTAAG+TGG 0.470796 6_4:-1783873 Msa0970320:CDS
TAAAAGGTTGGAGATGCTTA+AGG 0.471362 6_4:-1783796 Msa0970320:CDS
ACCCTCAACATTCCCGGATG+TGG 0.472840 6_4:-1783619 Msa0970320:CDS
TAGGTTGTTGGAGTTGGGAG+AGG 0.476758 6_4:-1783484 Msa0970320:CDS
TATTCTGAGTATAGAATTCA+GGG 0.476866 6_4:+1787127 None:intergenic
ACTATGTATCAGAATTTAGC+TGG 0.480799 6_4:-1783744 Msa0970320:CDS
CTCCAATGCCTTCAAGTAGT+TGG 0.483847 6_4:+1783454 None:intergenic
GAAGCAACACTCTGAGATAC+AGG 0.484950 6_4:-1784494 Msa0970320:intron
TATAGAATTCAGGGCAGGTT+CGG 0.489062 6_4:+1787136 None:intergenic
TGAGCAATCTAATCTCCAAC+TGG 0.496949 6_4:-1783673 Msa0970320:CDS
ATTGGGGCAATCTGCTAGCC+AGG 0.501980 6_4:+1785068 None:intergenic
TATCAATGAATCAAATCCTA+TGG 0.502065 6_4:+1788208 None:intergenic
TGATTTATGGAATATGGTTG+TGG 0.502146 6_4:+1786812 None:intergenic
GGAGATGCTTAAGGCAGAAA+AGG 0.502282 6_4:-1783787 Msa0970320:CDS
CCAAGAAGCATCTAAAAGGT+TGG 0.502752 6_4:-1783808 Msa0970320:CDS
ATCTTTGGATTTCATTGAAG+AGG 0.505262 6_4:+1785152 None:intergenic
GATGGAAAGTCTAATCCATC+GGG 0.505732 6_4:-1785132 Msa0970320:CDS
TCAGAATTTAGCTGGAAAGA+TGG 0.509840 6_4:-1783736 Msa0970320:CDS
TAAGGTGTGGTCGAGCATCT+AGG 0.509927 6_4:+1785031 None:intergenic
TATAACAAATCCACAGATAG+CGG 0.509972 6_4:-1784922 Msa0970320:CDS
CTCCACATCCGGGAATGTTG+AGG 0.512219 6_4:+1783617 None:intergenic
TCCACATCCGGGAATGTTGA+GGG 0.513884 6_4:+1783618 None:intergenic
ATGATCTGCTTGTATGCCTC+GGG 0.515345 6_4:-1783539 Msa0970320:CDS
GTGAAAGCACTGAGGGGAGA+AGG 0.521373 6_4:-1783642 Msa0970320:CDS
AGTTCTTGGAGAGGAGCCGC+AGG 0.523096 6_4:-1787159 Msa0970320:CDS
TCTTCAATGAAATCCAAAGA+TGG 0.523114 6_4:-1785150 Msa0970320:CDS
TGTTTATTAGCATCTTTCCC+AGG 0.524217 6_4:+1787986 None:intergenic
TATTAGGTGTTGAAAGCCAA+TGG 0.525069 6_4:-1787816 Msa0970320:CDS
TAATCTCCAACTGGAGAATG+AGG 0.528085 6_4:-1783664 Msa0970320:CDS
TCAGAAACAGTTTGTATAAG+GGG 0.528109 6_4:-1784979 Msa0970320:CDS
GCCGAGGACCTGGCTAAGAC+AGG 0.528464 6_4:-1783906 Msa0970320:CDS
CTAGCTCAAGAAGATAAGTA+AGG 0.530499 6_4:+1785013 None:intergenic
GGATTTCATTGAAGAGGTGA+GGG 0.532305 6_4:+1785158 None:intergenic
CTCAAGGCTATTGTATGCAT+CGG 0.535787 6_4:+1783692 None:intergenic
CCTTGCTTTGTTCTTGCCCG+AGG 0.536935 6_4:+1783523 None:intergenic
CAATCTCCAATGCAAGGAAA+GGG 0.537286 6_4:-1786389 Msa0970320:intron
AACTACTACCTGTCTTAGCC+AGG 0.540435 6_4:+1783898 None:intergenic
GATGTTGACCAACTACTTGA+AGG 0.541260 6_4:-1783462 Msa0970320:CDS
TTCAGGGCAGGTTCGGCCTG+CGG 0.541652 6_4:+1787143 None:intergenic
GCTATTACACGGTCTTACGT+TGG 0.542590 6_4:-1786572 Msa0970320:CDS
ACATATGAACATCCTCCTCA+TGG 0.545850 6_4:+1786783 None:intergenic
TGGATTTCATTGAAGAGGTG+AGG 0.546280 6_4:+1785157 None:intergenic
GGCAATAAAAGCTGAAGCAA+GGG 0.546682 6_4:-1783595 Msa0970320:CDS
CTGACTTATTATATCAACAA+TGG 0.547500 6_4:+1784885 None:intergenic
ATGCTTCTTGGAGATCTCTA+CGG 0.548408 6_4:+1783820 None:intergenic
AATGATCTGCTTGTATGCCT+CGG 0.550054 6_4:-1783540 Msa0970320:CDS
GAAGGCATTGGAGATGATGC+TGG 0.553705 6_4:-1783444 Msa0970320:CDS
TGTTATTCGAAATGGTACAT+TGG 0.553981 6_4:-1783928 Msa0970320:CDS
GCGTAGACGCTAGCATTGCT+TGG 0.554715 6_4:+1786840 None:intergenic
TGCATCTTTCCCGCTATCTG+TGG 0.555715 6_4:+1784912 None:intergenic
TCGAAATGGTACATTGGCCG+AGG 0.555789 6_4:-1783922 Msa0970320:CDS
ACAATCTCCAATGCAAGGAA+AGG 0.556110 6_4:-1786390 Msa0970320:CDS
ATAACAAATCCACAGATAGC+GGG 0.556615 6_4:-1784921 Msa0970320:CDS
GAATGAGGTGAAAGCACTGA+GGG 0.557554 6_4:-1783649 Msa0970320:CDS
ATTAGGTGTTGAAAGCCAAT+GGG 0.561629 6_4:-1787815 Msa0970320:CDS
GAGATCTTCAGCAGCTAGCA+TGG 0.565527 6_4:-1784764 Msa0970320:CDS
ATTCTGATACATAGTTGCCT+CGG 0.567736 6_4:+1783752 None:intergenic
AGATGGAAAGTCTAATCCAT+CGG 0.567871 6_4:-1785133 Msa0970320:CDS
CAGAAGAGAGGCGAAAGTGA+TGG 0.575651 6_4:-1784550 Msa0970320:CDS
GACCAACTACTTGAAGGCAT+TGG 0.577561 6_4:-1783456 Msa0970320:CDS
CTGAGTATAGAATTCAGGGC+AGG 0.578607 6_4:+1787131 None:intergenic
TTAGGCATTGAGATGTATTG+GGG 0.578774 6_4:-1787228 Msa0970320:intron
ACCTGTCTTAGCCAGGTCCT+CGG 0.579485 6_4:+1783905 None:intergenic
GAGGTTCTGAGGCTGATCCT+GGG 0.579669 6_4:-1788003 Msa0970320:CDS
GCAAAGAGTAAGTGGAGGCA+TGG 0.581767 6_4:-1783865 Msa0970320:CDS
TGCTAGCAAAGTTCTTGGAG+AGG 0.583453 6_4:-1787168 Msa0970320:CDS
GTTGGAGATTAGATTGCTCA+AGG 0.585113 6_4:+1783676 None:intergenic
CTTACGTTGGGTGAAAATGA+TGG 0.589032 6_4:-1786559 Msa0970320:CDS
CTCAACATTCCCGGATGTGG+AGG 0.590364 6_4:-1783616 Msa0970320:CDS
AAAGGACAATCTCCAATGCA+AGG 0.590795 6_4:-1786395 Msa0970320:CDS
GCTACTAAAGGGAGGTTCTG+AGG 0.602501 6_4:-1788014 Msa0970320:CDS
ACCTGTTGCAGTTCGCTGTG+CGG 0.603328 6_4:-1787791 Msa0970320:intron
TGCTGAAGATGTCGAAGACG+AGG 0.604461 6_4:-1783418 Msa0970320:CDS
ATTAAATTGCTACTAAAGGG+AGG 0.604946 6_4:-1788022 Msa0970320:CDS
TTGATTGGCTAACACGACAA+AGG 0.605466 6_4:+1783194 None:intergenic
GCAGCTCCTAATGATTGCAT+GGG 0.605658 6_4:+1785216 None:intergenic
GAAGAAATAGAGCAGAAGAG+AGG 0.612954 6_4:-1784562 Msa0970320:CDS
AAAGGCCAAAATTGAATCCG+AGG 0.614744 6_4:-1783769 Msa0970320:CDS
ACTTTCAGCATGCTATTACA+CGG 0.615199 6_4:-1786583 Msa0970320:intron
AGGTGGATAGACTTAGTGCT+AGG 0.616666 6_4:-1783503 Msa0970320:CDS
TGAGCGTATGAATTTCCCGA+TGG 0.618009 6_4:+1785117 None:intergenic
AGGCAATAAAAGCTGAAGCA+AGG 0.624635 6_4:-1783596 Msa0970320:CDS
AAATCATTCATTCCATGAGG+AGG 0.627668 6_4:-1786795 Msa0970320:CDS
TGAAAATGATGGTGATCTTG+AGG 0.627908 6_4:-1786548 Msa0970320:intron
GAACTGCAACAGGTACCCAT+TGG 0.628157 6_4:+1787800 None:intergenic
TATTAGAGAACAGATTGTGG+AGG 0.628847 6_4:-1784623 Msa0970320:CDS
CCTCGGGCAAGAACAAAGCA+AGG 0.643346 6_4:-1783523 Msa0970320:CDS
AAATATTAGAGAACAGATTG+TGG 0.646986 6_4:-1784626 Msa0970320:CDS
AGAACCACTAATGCATCGAA+TGG 0.648345 6_4:-1785193 Msa0970320:CDS
CATAAATCATTCATTCCATG+AGG 0.652425 6_4:-1786798 Msa0970320:CDS
GGAAGCAGTGCACTGCATTG+GGG 0.654074 6_4:+1785052 None:intergenic
GTGATGGTGAATATATAAAG+CGG 0.654240 6_4:-1784534 Msa0970320:CDS
GTACTACTCAGAGAGACCAT+AGG 0.657625 6_4:-1788224 Msa0970320:CDS
TCAAGAAGATAAGTAAGGTG+TGG 0.659005 6_4:+1785018 None:intergenic
AAAGCTCTGAAGGAGAGTGA+AGG 0.669019 6_4:-1783570 Msa0970320:CDS
TCTGAGCAAAGAGTAAGTGG+AGG 0.686096 6_4:-1783870 Msa0970320:CDS
AGAATGAGGTGAAAGCACTG+AGG 0.703852 6_4:-1783650 Msa0970320:CDS
CGGGCAAGAACAAAGCAAGG+TGG 0.713272 6_4:-1783520 Msa0970320:CDS
AATGAGGTGAAAGCACTGAG+GGG 0.725813 6_4:-1783648 Msa0970320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAAAGAAAAACAAAAT+TGG + chr6_4:1783979-1783998 None:intergenic 15.0%
!!! TTTTCTTTTTTCATTTCATT+TGG + chr6_4:1785201-1785220 None:intergenic 15.0%
!! ATCAGATTAAATAAACTTAT+AGG - chr6_4:1785582-1785601 Msa0970320:intron 15.0%
!! TCAGATTAAATAAACTTATA+GGG - chr6_4:1785583-1785602 Msa0970320:intron 15.0%
!! ATCATTATGTATAAATGTAT+GGG + chr6_4:1785981-1786000 None:intergenic 15.0%
!! TATCATTATGTATAAATGTA+TGG + chr6_4:1785982-1786001 None:intergenic 15.0%
!!! GAAATTTTAAAAAATGTTTC+AGG - chr6_4:1786053-1786072 Msa0970320:intron 15.0%
!! ATATAATAAGTCAGAAAATT+GGG - chr6_4:1786439-1786458 Msa0970320:intron 15.0%
!! TCAATGTTAATAAAAAACTA+CGG + chr6_4:1786995-1787014 None:intergenic 15.0%
!!! ATTTTGTAGTTGTTTTTAAA+TGG - chr6_4:1787032-1787051 Msa0970320:intron 15.0%
!! CTTTAACAAATTTATCAATA+TGG - chr6_4:1787292-1787311 Msa0970320:intron 15.0%
!!! TTATTCTTTTACTCAACAAA+AGG - chr6_4:1783156-1783175 Msa0970320:three_prime_UTR 20.0%
!! AAGTATTCTTCTTGATAAAT+CGG - chr6_4:1783815-1783834 Msa0970320:CDS 20.0%
!!! TTTCTTTTTTTCTTTCTGAA+AGG - chr6_4:1783987-1784006 Msa0970320:intron 20.0%
!! TCAATTATTATGAAGTATGA+AGG - chr6_4:1784030-1784049 Msa0970320:intron 20.0%
!! CAATTATTATGAAGTATGAA+GGG - chr6_4:1784031-1784050 Msa0970320:intron 20.0%
!! AATTATTATGAAGTATGAAG+GGG - chr6_4:1784032-1784051 Msa0970320:intron 20.0%
!! AATTTAAGAGCTGATAAATT+TGG - chr6_4:1784348-1784367 Msa0970320:intron 20.0%
!!! AAGAAGCATAAATGAAAAAT+AGG + chr6_4:1784400-1784419 None:intergenic 20.0%
!! AATGAATGATTTATGGAATA+TGG + chr6_4:1784512-1784531 None:intergenic 20.0%
!! TAACTGAAATGTTATGATTT+AGG + chr6_4:1784671-1784690 None:intergenic 20.0%
!!! TTTCATATTTCAGATTTGTT+TGG - chr6_4:1784827-1784846 Msa0970320:CDS 20.0%
!! TGTTCTATCTCATATATTAA+AGG - chr6_4:1784902-1784921 Msa0970320:CDS 20.0%
!!! CTTTATTTTACAACAAGTTT+TGG - chr6_4:1784984-1785003 Msa0970320:CDS 20.0%
!! TATAGATTTCTACTATAGAA+AGG - chr6_4:1785131-1785150 Msa0970320:CDS 20.0%
!!! AAACAACAATTGTTGATTAA+AGG - chr6_4:1785557-1785576 Msa0970320:intron 20.0%
!! CAGATTAAATAAACTTATAG+GGG - chr6_4:1785584-1785603 Msa0970320:intron 20.0%
!! AAATAGCAAAAGTAACATTT+GGG + chr6_4:1785863-1785882 None:intergenic 20.0%
!! AAAATAGCAAAAGTAACATT+TGG + chr6_4:1785864-1785883 None:intergenic 20.0%
!!! TTACTTTTGCTATTTTTGTA+TGG - chr6_4:1785868-1785887 Msa0970320:intron 20.0%
!! ATAAACTATTCATACTATTG+CGG - chr6_4:1785899-1785918 Msa0970320:intron 20.0%
!! ATACATAATGATAGTATGAA+TGG - chr6_4:1785989-1786008 Msa0970320:intron 20.0%
!! GATATAATAAGTCAGAAAAT+TGG - chr6_4:1786438-1786457 Msa0970320:intron 20.0%
!!! AATTATGGTTGGATTTTTAT+TGG - chr6_4:1787987-1788006 Msa0970320:CDS 20.0%
! TATCAATGAATCAAATCCTA+TGG + chr6_4:1783110-1783129 None:intergenic 25.0%
! ATAACAAGAGTTAGCTATAA+GGG + chr6_4:1783226-1783245 None:intergenic 25.0%
! TATAACAAGAGTTAGCTATA+AGG + chr6_4:1783227-1783246 None:intergenic 25.0%
! AACCATTAAATTGCTACTAA+AGG - chr6_4:1783289-1783308 Msa0970320:three_prime_UTR 25.0%
! ACCATTAAATTGCTACTAAA+GGG - chr6_4:1783290-1783309 Msa0970320:three_prime_UTR 25.0%
! TCACTTTGTCATTACTTAAA+AGG + chr6_4:1783733-1783752 None:intergenic 25.0%
!! TCATTGAATCCAATTTTCTT+TGG - chr6_4:1783871-1783890 Msa0970320:CDS 25.0%
! CATATGAAACCAAAGAAAAT+TGG + chr6_4:1783883-1783902 None:intergenic 25.0%
! TATTCTGAGTATAGAATTCA+GGG + chr6_4:1784191-1784210 None:intergenic 25.0%
! TTATTCTGAGTATAGAATTC+AGG + chr6_4:1784192-1784211 None:intergenic 25.0%
!! CTATACTCAGAATAATTTTG+AGG - chr6_4:1784197-1784216 Msa0970320:intron 25.0%
!! TGTTTTCAAAAACTTTTGTG+AGG - chr6_4:1784255-1784274 Msa0970320:intron 25.0%
! TAGATAACGTTAATCAAGAA+AGG + chr6_4:1784435-1784454 None:intergenic 25.0%
! GAAACAAATAACGAAGTTAA+AGG + chr6_4:1784712-1784731 None:intergenic 25.0%
!! TTTGGAGTAAAAGCTTAAAT+TGG + chr6_4:1785183-1785202 None:intergenic 25.0%
! TTCAGATTGAGAAATTAGTT+AGG - chr6_4:1785276-1785295 Msa0970320:intron 25.0%
! GTTCTTATGAATTTACTTGA+AGG - chr6_4:1785833-1785852 Msa0970320:intron 25.0%
! TAGTATGAATGGTAAGATTA+AGG - chr6_4:1786000-1786019 Msa0970320:intron 25.0%
!!! AGCTATTATTTTGAAATTGC+TGG - chr6_4:1786221-1786240 Msa0970320:intron 25.0%
! CTGACTTATTATATCAACAA+TGG + chr6_4:1786433-1786452 None:intergenic 25.0%
! AAATATTAGAGAACAGATTG+TGG - chr6_4:1786689-1786708 Msa0970320:intron 25.0%
! ACGTTGTTAATTATACAGTA+AGG + chr6_4:1786923-1786942 None:intergenic 25.0%
! AAGATTACAAAAAACATTCC+TGG - chr6_4:1787067-1787086 Msa0970320:CDS 25.0%
! CTGTTTAATAATAGTACCTT+AGG - chr6_4:1787172-1787191 Msa0970320:CDS 25.0%
!!! ACACACTTCTTATTTTTCTA+TGG + chr6_4:1787251-1787270 None:intergenic 25.0%
!! ATAGAAAAATAAGAAGTGTG+TGG - chr6_4:1787250-1787269 Msa0970320:intron 25.0%
!!! ATAAATTTGTTAAAGAGCAC+TGG + chr6_4:1787287-1787306 None:intergenic 25.0%
!! TTGATATGTGTTTGATTTAG+TGG - chr6_4:1787326-1787345 Msa0970320:intron 25.0%
!!! ATTTTTATTTTCATCGTCTC+AGG - chr6_4:1787360-1787379 Msa0970320:intron 25.0%
! ATTTGCGAGAAAGAAATTTA+AGG - chr6_4:1788144-1788163 Msa0970320:intron 25.0%
!!! ATATTGATTTTGAAGCTGAG+AGG - chr6_4:1783127-1783146 Msa0970320:three_prime_UTR 30.0%
! TCTTTTACTCAACAAAAGGT+TGG - chr6_4:1783160-1783179 Msa0970320:three_prime_UTR 30.0%
TCCCTTTAGTAGCAATTTAA+TGG + chr6_4:1783294-1783313 None:intergenic 30.0%
ATTAAATTGCTACTAAAGGG+AGG - chr6_4:1783293-1783312 Msa0970320:three_prime_UTR 30.0%
! GAACTTATACTTCTGTTTTG+TGG - chr6_4:1783439-1783458 Msa0970320:CDS 30.0%
TTACAAATGACATCTAGACA+TGG - chr6_4:1783676-1783695 Msa0970320:CDS 30.0%
TATTCTTCTTGATAAATCGG+TGG - chr6_4:1783818-1783837 Msa0970320:CDS 30.0%
TTGATGAACTTTCTCTCATT+AGG - chr6_4:1784069-1784088 Msa0970320:intron 30.0%
!! ATTAGGCATTGAGATGTATT+GGG - chr6_4:1784086-1784105 Msa0970320:intron 30.0%
!! GTTTTTGAAAACATCATCAG+CGG + chr6_4:1784248-1784267 None:intergenic 30.0%
! TTCAAAAACTTTTGTGAGGT+TGG - chr6_4:1784259-1784278 Msa0970320:intron 30.0%
CTAAATCAGAAAAATGCTGA+TGG - chr6_4:1784452-1784471 Msa0970320:intron 30.0%
TGATTTATGGAATATGGTTG+TGG + chr6_4:1784506-1784525 None:intergenic 30.0%
CTCATGGAATGAATGATTTA+TGG + chr6_4:1784519-1784538 None:intergenic 30.0%
CATAAATCATTCATTCCATG+AGG - chr6_4:1784517-1784536 Msa0970320:CDS 30.0%
! ATGTTCATATGTCTTTTGGA+AGG - chr6_4:1784543-1784562 Msa0970320:CDS 30.0%
!!! TTTTGGAAGGTTTGTTTTGT+TGG - chr6_4:1784556-1784575 Msa0970320:CDS 30.0%
!! TTTTGTTGGTTGTGCTTTAA+TGG - chr6_4:1784570-1784589 Msa0970320:CDS 30.0%
! TCAGATTTGTTTGGATTATC+TGG - chr6_4:1784836-1784855 Msa0970320:CDS 30.0%
AAGCTAAAAATGCAATGAAG+CGG + chr6_4:1784967-1784986 None:intergenic 30.0%
!! GTTTTGGTAGATGTAATGTA+AGG - chr6_4:1785000-1785019 Msa0970320:CDS 30.0%
TTTCTGTGAAAGAAGCTAAT+AGG - chr6_4:1785306-1785325 Msa0970320:intron 30.0%
TCCATTCAACTACTAACAAA+GGG + chr6_4:1785384-1785403 None:intergenic 30.0%
TTCCATTCAACTACTAACAA+AGG + chr6_4:1785385-1785404 None:intergenic 30.0%
GTAAAACTTGCACTAACAAA+AGG + chr6_4:1785725-1785744 None:intergenic 30.0%
CTAGAGCAAAATAAACCAAT+AGG + chr6_4:1785949-1785968 None:intergenic 30.0%
TGAATGGTAAGATTAAGGAA+AGG - chr6_4:1786005-1786024 Msa0970320:intron 30.0%
GAAAGGAAGAAGTGAAATTT+AGG - chr6_4:1786022-1786041 Msa0970320:intron 30.0%
ATCTTTGGATTTCATTGAAG+AGG + chr6_4:1786166-1786185 None:intergenic 30.0%
TCTTCAATGAAATCCAAAGA+TGG - chr6_4:1786165-1786184 Msa0970320:intron 30.0%
TGTCAGAAACAGTTTGTATA+AGG - chr6_4:1786334-1786353 Msa0970320:intron 30.0%
GTCAGAAACAGTTTGTATAA+GGG - chr6_4:1786335-1786354 Msa0970320:intron 30.0%
TCAGAAACAGTTTGTATAAG+GGG - chr6_4:1786336-1786355 Msa0970320:intron 30.0%
TATAACAAATCCACAGATAG+CGG - chr6_4:1786393-1786412 Msa0970320:CDS 30.0%
!!! AGTTTTGTTTTCGCTAATGT+GGG - chr6_4:1786501-1786520 Msa0970320:intron 30.0%
! TCCAATTCTCACTACAATTT+TGG - chr6_4:1786629-1786648 Msa0970320:intron 30.0%
TCCAAAATTGTAGTGAGAAT+TGG + chr6_4:1786633-1786652 None:intergenic 30.0%
! GTGATGGTGAATATATAAAG+CGG - chr6_4:1786781-1786800 Msa0970320:CDS 30.0%
ACATGAAAGAAACAGATTCA+TGG + chr6_4:1786894-1786913 None:intergenic 30.0%
CTAAATACTCTGAATTTCGA+AGG + chr6_4:1786970-1786989 None:intergenic 30.0%
TGTTATTCGAAATGGTACAT+TGG - chr6_4:1787387-1787406 Msa0970320:intron 30.0%
ACTATGTATCAGAATTTAGC+TGG - chr6_4:1787571-1787590 Msa0970320:intron 30.0%
TGTACAGCTAACTCAAATTA+TGG - chr6_4:1787972-1787991 Msa0970320:CDS 30.0%
! TGGATTTTTATTGGAGATGA+TGG - chr6_4:1787996-1788015 Msa0970320:CDS 30.0%
!! TTTTTATTGGAGATGATGGT+TGG - chr6_4:1788000-1788019 Msa0970320:CDS 30.0%
! GGTTCTATTTTGCAATATTC+AGG - chr6_4:1788061-1788080 Msa0970320:intron 30.0%
TTCTTTCTCGCAAATTTGAT+TGG + chr6_4:1788139-1788158 None:intergenic 30.0%
!! CTGTTGAATGTTTTTACATG+AGG - chr6_4:1788181-1788200 Msa0970320:CDS 30.0%
TGAGTAGATTGATTGTCTAC+TGG + chr6_4:1783259-1783278 None:intergenic 35.0%
TGTTTATTAGCATCTTTCCC+AGG + chr6_4:1783332-1783351 None:intergenic 35.0%
ACAGAAAAATAAGACAGCTC+TGG - chr6_4:1783349-1783368 Msa0970320:three_prime_UTR 35.0%
! TGATGATGATTGCATAGATG+AGG - chr6_4:1783402-1783421 Msa0970320:exon 35.0%
GTGGAATTGCATGTAGAAAA+AGG - chr6_4:1783458-1783477 Msa0970320:CDS 35.0%
! TTGCATGTAGAAAAAGGTAC+TGG - chr6_4:1783464-1783483 Msa0970320:CDS 35.0%
CTGGACAGTATGTTGATATT+AGG - chr6_4:1783483-1783502 Msa0970320:CDS 35.0%
!! TATTAGGTGTTGAAAGCCAA+TGG - chr6_4:1783499-1783518 Msa0970320:CDS 35.0%
!! ATTAGGTGTTGAAAGCCAAT+GGG - chr6_4:1783500-1783519 Msa0970320:CDS 35.0%
!! CATTAGGCATTGAGATGTAT+TGG - chr6_4:1784085-1784104 Msa0970320:intron 35.0%
!! TTAGGCATTGAGATGTATTG+GGG - chr6_4:1784087-1784106 Msa0970320:intron 35.0%
TGTATTGGGGATTTAATTGC+TGG - chr6_4:1784100-1784119 Msa0970320:intron 35.0%
AAATCATTCATTCCATGAGG+AGG - chr6_4:1784520-1784539 Msa0970320:CDS 35.0%
! GAGGATGTTCATATGTCTTT+TGG - chr6_4:1784539-1784558 Msa0970320:CDS 35.0%
ACTTTCAGCATGCTATTACA+CGG - chr6_4:1784732-1784751 Msa0970320:CDS 35.0%
! TGAAAATGATGGTGATCTTG+AGG - chr6_4:1784767-1784786 Msa0970320:CDS 35.0%
AGCTAAAAATGCAATGAAGC+GGG + chr6_4:1784966-1784985 None:intergenic 35.0%
! GTCTCGACTCTCTAATTTTA+AGG - chr6_4:1785223-1785242 Msa0970320:CDS 35.0%
TCCCTTTGTTAGTAGTTGAA+TGG - chr6_4:1785380-1785399 Msa0970320:intron 35.0%
! GGAAATTTTGTGACACCATT+TGG - chr6_4:1785401-1785420 Msa0970320:intron 35.0%
! TTTTGCGTACTGTATCTTGT+TGG - chr6_4:1785467-1785486 Msa0970320:intron 35.0%
TTTGCGTACTGTATCTTGTT+GGG - chr6_4:1785468-1785487 Msa0970320:intron 35.0%
!!! GTCAATGCACTTATTTTTGC+TGG - chr6_4:1785504-1785523 Msa0970320:intron 35.0%
GCATCAATAAATACTCTCAC+CGG - chr6_4:1785686-1785705 Msa0970320:intron 35.0%
! GAGAAAGATGAAAAGCATGA+TGG + chr6_4:1785773-1785792 None:intergenic 35.0%
GCATCGAATGGTGAAATATT+TGG - chr6_4:1786134-1786153 Msa0970320:intron 35.0%
! TGGATTAGACTTTCCATCTT+TGG + chr6_4:1786181-1786200 None:intergenic 35.0%
AGATGGAAAGTCTAATCCAT+CGG - chr6_4:1786182-1786201 Msa0970320:intron 35.0%
!!! TTTTGAAATTGCTGGTTACC+TGG - chr6_4:1786229-1786248 Msa0970320:intron 35.0%
TCAAGAAGATAAGTAAGGTG+TGG + chr6_4:1786300-1786319 None:intergenic 35.0%
CTAGCTCAAGAAGATAAGTA+AGG + chr6_4:1786305-1786324 None:intergenic 35.0%
ATAACAAATCCACAGATAGC+GGG - chr6_4:1786394-1786413 Msa0970320:CDS 35.0%
!!! GAGTTTTGTTTTCGCTAATG+TGG - chr6_4:1786500-1786519 Msa0970320:intron 35.0%
!!! GTTTTGTTTTCGCTAATGTG+GGG - chr6_4:1786502-1786521 Msa0970320:intron 35.0%
! CGTGAATTTTGTGAAAAGAC+TGG - chr6_4:1786662-1786681 Msa0970320:intron 35.0%
! GAATTTTGTGAAAAGACTGG+AGG - chr6_4:1786665-1786684 Msa0970320:intron 35.0%
TATTAGAGAACAGATTGTGG+AGG - chr6_4:1786692-1786711 Msa0970320:intron 35.0%
TTATAGTCGTCCAAAAATCC+AGG - chr6_4:1786716-1786735 Msa0970320:intron 35.0%
! ACTACTGTTACCTGGATTTT+TGG + chr6_4:1786729-1786748 None:intergenic 35.0%
CGTATATATACTGAGAGGAA+TGG + chr6_4:1786863-1786882 None:intergenic 35.0%
TTCCTCTCAGTATATATACG+TGG - chr6_4:1786863-1786882 Msa0970320:intron 35.0%
ATCCACGTATATATACTGAG+AGG + chr6_4:1786868-1786887 None:intergenic 35.0%
!!! CAAGTTGGGTTTTTTTCTGA+TGG - chr6_4:1787145-1787164 Msa0970320:CDS 35.0%
ATTCTTGCTGAACAAACCTA+AGG + chr6_4:1787191-1787210 None:intergenic 35.0%
!! CAGGATCTTGTTATTCGAAA+TGG - chr6_4:1787379-1787398 Msa0970320:intron 35.0%
!! ATCTCCAAGAAGCATCTAAA+AGG - chr6_4:1787503-1787522 Msa0970320:intron 35.0%
TAAAAGGTTGGAGATGCTTA+AGG - chr6_4:1787519-1787538 Msa0970320:intron 35.0%
ATTCTGATACATAGTTGCCT+CGG + chr6_4:1787566-1787585 None:intergenic 35.0%
TCAGAATTTAGCTGGAAAGA+TGG - chr6_4:1787579-1787598 Msa0970320:intron 35.0%
CAGCTAACTCAAATTATGGT+TGG - chr6_4:1787976-1787995 Msa0970320:CDS 35.0%
AGATTGATTGTCTACTGGCA+TGG + chr6_4:1783254-1783273 None:intergenic 40.0%
! AAATAAGACAGCTCTGGTTC+AGG - chr6_4:1783355-1783374 Msa0970320:three_prime_UTR 40.0%
ATAGATGAGGAATCTGCTTC+TGG - chr6_4:1783415-1783434 Msa0970320:CDS 40.0%
ACGTGTCTATACATTGTGAG+AGG + chr6_4:1783562-1783581 None:intergenic 40.0%
CTCACAATGTATAGACACGT+CGG - chr6_4:1783562-1783581 Msa0970320:CDS 40.0%
AAGCTACTATCACTCATGCA+TGG + chr6_4:1783759-1783778 None:intergenic 40.0%
CTTGATAAATCGGTGGAACT+TGG - chr6_4:1783825-1783844 Msa0970320:CDS 40.0%
CATAGAACAGAAACTGGGAA+AGG + chr6_4:1783948-1783967 None:intergenic 40.0%
CTTTCCCAGTTTCTGTTCTA+TGG - chr6_4:1783946-1783965 Msa0970320:intron 40.0%
GATGCCATAGAACAGAAACT+GGG + chr6_4:1783953-1783972 None:intergenic 40.0%
TGATGCCATAGAACAGAAAC+TGG + chr6_4:1783954-1783973 None:intergenic 40.0%
CTTCTTGCTAGCAAAGTTCT+TGG - chr6_4:1784142-1784161 Msa0970320:intron 40.0%
TATAGAATTCAGGGCAGGTT+CGG + chr6_4:1784182-1784201 None:intergenic 40.0%
ACATATGAACATCCTCCTCA+TGG + chr6_4:1784535-1784554 None:intergenic 40.0%
CTATTACACGGTCTTACGTT+GGG - chr6_4:1784744-1784763 Msa0970320:CDS 40.0%
CTTACGTTGGGTGAAAATGA+TGG - chr6_4:1784756-1784775 Msa0970320:CDS 40.0%
AAAGGACAATCTCCAATGCA+AGG - chr6_4:1784920-1784939 Msa0970320:CDS 40.0%
ACAATCTCCAATGCAAGGAA+AGG - chr6_4:1784925-1784944 Msa0970320:CDS 40.0%
CAATCTCCAATGCAAGGAAA+GGG - chr6_4:1784926-1784945 Msa0970320:CDS 40.0%
AACATACCCTTTCCTTGCAT+TGG + chr6_4:1784935-1784954 None:intergenic 40.0%
GCTAAAAATGCAATGAAGCG+GGG + chr6_4:1784965-1784984 None:intergenic 40.0%
GGGAGACACAATTTACCAAA+TGG + chr6_4:1785419-1785438 None:intergenic 40.0%
AACTTGCACTAACAAAAGGC+AGG + chr6_4:1785721-1785740 None:intergenic 40.0%
CCAATAGGTAAACACTGATG+TGG + chr6_4:1785934-1785953 None:intergenic 40.0%
CCACATCAGTGTTTACCTAT+TGG - chr6_4:1785931-1785950 Msa0970320:intron 40.0%
! GGTTTTGCGAATTGAAATCG+AGG - chr6_4:1786074-1786093 Msa0970320:intron 40.0%
AGAACCACTAATGCATCGAA+TGG - chr6_4:1786122-1786141 Msa0970320:intron 40.0%
TTCACCATTCGATGCATTAG+TGG + chr6_4:1786129-1786148 None:intergenic 40.0%
GGATTTCATTGAAGAGGTGA+GGG + chr6_4:1786160-1786179 None:intergenic 40.0%
TGGATTTCATTGAAGAGGTG+AGG + chr6_4:1786161-1786180 None:intergenic 40.0%
GATGGAAAGTCTAATCCATC+GGG - chr6_4:1786183-1786202 Msa0970320:intron 40.0%
! CTCTTCTGCTCTATTTCTTC+TGG + chr6_4:1786753-1786772 None:intergenic 40.0%
GAAGAAATAGAGCAGAAGAG+AGG - chr6_4:1786753-1786772 Msa0970320:intron 40.0%
CATCGTAGTTAACACTTTCC+AGG + chr6_4:1787088-1787107 None:intergenic 40.0%
!! TGTTGATTCGTTCAGCAAGT+TGG - chr6_4:1787130-1787149 Msa0970320:CDS 40.0%
!! GTTGATTCGTTCAGCAAGTT+GGG - chr6_4:1787131-1787150 Msa0970320:CDS 40.0%
ATGCTTCTTGGAGATCTCTA+CGG + chr6_4:1787498-1787517 None:intergenic 40.0%
! CCAACCTTTTAGATGCTTCT+TGG + chr6_4:1787510-1787529 None:intergenic 40.0%
!! CCAAGAAGCATCTAAAAGGT+TGG - chr6_4:1787507-1787526 Msa0970320:intron 40.0%
AAAGGCCAAAATTGAATCCG+AGG - chr6_4:1787546-1787565 Msa0970320:intron 40.0%
! AGTTGCCTCGGATTCAATTT+TGG + chr6_4:1787554-1787573 None:intergenic 40.0%
CTCAAGGCTATTGTATGCAT+CGG + chr6_4:1787626-1787645 None:intergenic 40.0%
GTTGGAGATTAGATTGCTCA+AGG + chr6_4:1787642-1787661 None:intergenic 40.0%
TGAGCAATCTAATCTCCAAC+TGG - chr6_4:1787642-1787661 Msa0970320:intron 40.0%
TAATCTCCAACTGGAGAATG+AGG - chr6_4:1787651-1787670 Msa0970320:intron 40.0%
AGGCAATAAAAGCTGAAGCA+AGG - chr6_4:1787719-1787738 Msa0970320:intron 40.0%
GGCAATAAAAGCTGAAGCAA+GGG - chr6_4:1787720-1787739 Msa0970320:intron 40.0%
AATGATCTGCTTGTATGCCT+CGG - chr6_4:1787775-1787794 Msa0970320:intron 40.0%
TAGACTTAGTGCTAGGTTGT+TGG - chr6_4:1787819-1787838 Msa0970320:CDS 40.0%
GATGTTGACCAACTACTTGA+AGG - chr6_4:1787853-1787872 Msa0970320:intron 40.0%
! TTGATTGGCTAACACGACAA+AGG + chr6_4:1788124-1788143 None:intergenic 40.0%
GTACTACTCAGAGAGACCAT+AGG - chr6_4:1783091-1783110 Msa0970320:three_prime_UTR 45.0%
GTGGAACTTGGAGTCTACTT+GGG - chr6_4:1783837-1783856 Msa0970320:CDS 45.0%
TGCTAGCAAAGTTCTTGGAG+AGG - chr6_4:1784147-1784166 Msa0970320:intron 45.0%
CTGAGTATAGAATTCAGGGC+AGG + chr6_4:1784187-1784206 None:intergenic 45.0%
GCTATTACACGGTCTTACGT+TGG - chr6_4:1784743-1784762 Msa0970320:CDS 45.0%
! TACCGACACAGGAAAAGCAT+GGG + chr6_4:1785439-1785458 None:intergenic 45.0%
!! CTTTTCCTGTGTCGGTAGTT+GGG - chr6_4:1785442-1785461 Msa0970320:intron 45.0%
GGGGAAGTAATACACTAGTG+AGG - chr6_4:1785603-1785622 Msa0970320:intron 45.0%
AAAAGGCAGGACTAGATCTC+CGG + chr6_4:1785708-1785727 None:intergenic 45.0%
AGGTAAACACTGATGTGGCA+TGG + chr6_4:1785929-1785948 None:intergenic 45.0%
GCAGCTCCTAATGATTGCAT+GGG + chr6_4:1786102-1786121 None:intergenic 45.0%
TGCAGCTCCTAATGATTGCA+TGG + chr6_4:1786103-1786122 None:intergenic 45.0%
TGAGCGTATGAATTTCCCGA+TGG + chr6_4:1786201-1786220 None:intergenic 45.0%
! GGTTTTGCAGCAGTTGTGTT+GGG - chr6_4:1786357-1786376 Msa0970320:intron 45.0%
!! GAAGCAACACTCTGAGATAC+AGG - chr6_4:1786821-1786840 Msa0970320:CDS 45.0%
! TAAGAAGTGTGTGGAACTGC+AGG - chr6_4:1787259-1787278 Msa0970320:intron 45.0%
AACTACTACCTGTCTTAGCC+AGG + chr6_4:1787420-1787439 None:intergenic 45.0%
CACTTACTCTTTGCTCAGAC+TGG + chr6_4:1787444-1787463 None:intergenic 45.0%
CAGTCTGAGCAAAGAGTAAG+TGG - chr6_4:1787442-1787461 Msa0970320:intron 45.0%
TCTGAGCAAAGAGTAAGTGG+AGG - chr6_4:1787445-1787464 Msa0970320:intron 45.0%
! CTCTACGGAGTGTCTCTATT+TGG + chr6_4:1787483-1787502 None:intergenic 45.0%
GGAGATGCTTAAGGCAGAAA+AGG - chr6_4:1787528-1787547 Msa0970320:intron 45.0%
CTTTCACCTCATTCTCCAGT+TGG + chr6_4:1787660-1787679 None:intergenic 45.0%
!! AGAATGAGGTGAAAGCACTG+AGG - chr6_4:1787665-1787684 Msa0970320:intron 45.0%
!! GAATGAGGTGAAAGCACTGA+GGG - chr6_4:1787666-1787685 Msa0970320:intron 45.0%
!! AATGAGGTGAAAGCACTGAG+GGG - chr6_4:1787667-1787686 Msa0970320:intron 45.0%
! CTTTTATTGCCTCCACATCC+GGG + chr6_4:1787711-1787730 None:intergenic 45.0%
! GCTTTTATTGCCTCCACATC+CGG + chr6_4:1787712-1787731 None:intergenic 45.0%
! AGCAAGGGAAAAAGCTCTGA+AGG - chr6_4:1787735-1787754 Msa0970320:intron 45.0%
!! AAAGCTCTGAAGGAGAGTGA+AGG - chr6_4:1787745-1787764 Msa0970320:intron 45.0%
ATGATCTGCTTGTATGCCTC+GGG - chr6_4:1787776-1787795 Msa0970320:intron 45.0%
AGGTGGATAGACTTAGTGCT+AGG - chr6_4:1787812-1787831 Msa0970320:CDS 45.0%
TAGTGCTAGGTTGTTGGAGT+TGG - chr6_4:1787825-1787844 Msa0970320:CDS 45.0%
AGTGCTAGGTTGTTGGAGTT+GGG - chr6_4:1787826-1787845 Msa0970320:CDS 45.0%
! GACCAACTACTTGAAGGCAT+TGG - chr6_4:1787859-1787878 Msa0970320:intron 45.0%
CTCCAATGCCTTCAAGTAGT+TGG + chr6_4:1787864-1787883 None:intergenic 45.0%
CTTCAAGACACAGTTCTTGC+TGG - chr6_4:1788040-1788059 Msa0970320:CDS 45.0%
GCTACTAAAGGGAGGTTCTG+AGG - chr6_4:1783301-1783320 Msa0970320:three_prime_UTR 50.0%
GAACTGCAACAGGTACCCAT+TGG + chr6_4:1783518-1783537 None:intergenic 50.0%
GGTGGAACTTGGAGTCTACT+TGG - chr6_4:1783836-1783855 Msa0970320:CDS 50.0%
! CTCCCATGCTTTTCCTGTGT+CGG - chr6_4:1785434-1785453 Msa0970320:intron 50.0%
CTACCGACACAGGAAAAGCA+TGG + chr6_4:1785440-1785459 None:intergenic 50.0%
!! GCTTTTCCTGTGTCGGTAGT+TGG - chr6_4:1785441-1785460 Msa0970320:intron 50.0%
AAAAGCCCAACTACCGACAC+AGG + chr6_4:1785450-1785469 None:intergenic 50.0%
! GAGGCACCCATGCAATCATT+AGG - chr6_4:1786093-1786112 Msa0970320:intron 50.0%
AGGAAGCAGTGCACTGCATT+GGG + chr6_4:1786267-1786286 None:intergenic 50.0%
TAGGAAGCAGTGCACTGCAT+TGG + chr6_4:1786268-1786287 None:intergenic 50.0%
TAAGGTGTGGTCGAGCATCT+AGG + chr6_4:1786287-1786306 None:intergenic 50.0%
! GGGTTTTGCAGCAGTTGTGT+TGG - chr6_4:1786356-1786375 Msa0970320:intron 50.0%
TGCATCTTTCCCGCTATCTG+TGG + chr6_4:1786406-1786425 None:intergenic 50.0%
GAGATCTTCAGCAGCTAGCA+TGG - chr6_4:1786551-1786570 Msa0970320:CDS 50.0%
CTTCTGGCACTACTGTTACC+TGG + chr6_4:1786737-1786756 None:intergenic 50.0%
CAGAAGAGAGGCGAAAGTGA+TGG - chr6_4:1786765-1786784 Msa0970320:intron 50.0%
TCGAAATGGTACATTGGCCG+AGG - chr6_4:1787393-1787412 Msa0970320:intron 50.0%
GCAAAGAGTAAGTGGAGGCA+TGG - chr6_4:1787450-1787469 Msa0970320:intron 50.0%
AGAAGGACCCTCAACATTCC+CGG - chr6_4:1787690-1787709 Msa0970320:intron 50.0%
TCCACATCCGGGAATGTTGA+GGG + chr6_4:1787700-1787719 None:intergenic 50.0%
TAGGTTGTTGGAGTTGGGAG+AGG - chr6_4:1787831-1787850 Msa0970320:CDS 50.0%
!! GAAGGCATTGGAGATGATGC+TGG - chr6_4:1787871-1787890 Msa0970320:intron 50.0%
TGCTGAAGATGTCGAAGACG+AGG - chr6_4:1787897-1787916 Msa0970320:intron 50.0%
!! GAGGTTCTGAGGCTGATCCT+GGG - chr6_4:1783312-1783331 Msa0970320:three_prime_UTR 55.0%
ACCTGTTGCAGTTCGCTGTG+CGG - chr6_4:1783524-1783543 Msa0970320:CDS 55.0%
GCGTAGACGCTAGCATTGCT+TGG + chr6_4:1784478-1784497 None:intergenic 55.0%
ATTGGGGCAATCTGCTAGCC+AGG + chr6_4:1786250-1786269 None:intergenic 55.0%
GGAAGCAGTGCACTGCATTG+GGG + chr6_4:1786266-1786285 None:intergenic 55.0%
ACCTGTCTTAGCCAGGTCCT+CGG + chr6_4:1787413-1787432 None:intergenic 55.0%
!! GTGAAAGCACTGAGGGGAGA+AGG - chr6_4:1787673-1787692 Msa0970320:intron 55.0%
ACCCTCAACATTCCCGGATG+TGG - chr6_4:1787696-1787715 Msa0970320:intron 55.0%
CTCCACATCCGGGAATGTTG+AGG + chr6_4:1787701-1787720 None:intergenic 55.0%
CTCAACATTCCCGGATGTGG+AGG - chr6_4:1787699-1787718 Msa0970320:intron 55.0%
! CCTTGCTTTGTTCTTGCCCG+AGG + chr6_4:1787795-1787814 None:intergenic 55.0%
CCTCGGGCAAGAACAAAGCA+AGG - chr6_4:1787792-1787811 Msa0970320:CDS 55.0%
CGGGCAAGAACAAAGCAAGG+TGG - chr6_4:1787795-1787814 Msa0970320:CDS 55.0%
!! GGAGGTTCTGAGGCTGATCC+TGG - chr6_4:1783311-1783330 Msa0970320:three_prime_UTR 60.0%
ACCGCACAGCGAACTGCAAC+AGG + chr6_4:1783528-1783547 None:intergenic 60.0%
AGTTCTTGGAGAGGAGCCGC+AGG - chr6_4:1784156-1784175 Msa0970320:intron 60.0%
TGGTACATTGGCCGAGGACC+TGG - chr6_4:1787399-1787418 Msa0970320:intron 60.0%
TTCAGGGCAGGTTCGGCCTG+CGG + chr6_4:1784175-1784194 None:intergenic 65.0%
GCCGAGGACCTGGCTAAGAC+AGG - chr6_4:1787409-1787428 Msa0970320:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 1783088 1788249 1783088 ID=Msa0970320;Name=Msa0970320
chr6_4 mRNA 1783088 1788249 1783088 ID=Msa0970320-mRNA-1;Parent=Msa0970320;Name=Msa0970320-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.88|1|0.87|0.77|9|319|665
chr6_4 exon 1783088 1783955 1783088 ID=Msa0970320-mRNA-1:exon:901;Parent=Msa0970320-mRNA-1
chr6_4 exon 1784495 1785262 1784495 ID=Msa0970320-mRNA-1:exon:900;Parent=Msa0970320-mRNA-1
chr6_4 exon 1786390 1786455 1786390 ID=Msa0970320-mRNA-1:exon:899;Parent=Msa0970320-mRNA-1
chr6_4 exon 1786549 1786597 1786549 ID=Msa0970320-mRNA-1:exon:898;Parent=Msa0970320-mRNA-1
chr6_4 exon 1786773 1786876 1786773 ID=Msa0970320-mRNA-1:exon:897;Parent=Msa0970320-mRNA-1
chr6_4 exon 1787061 1787246 1787061 ID=Msa0970320-mRNA-1:exon:896;Parent=Msa0970320-mRNA-1
chr6_4 exon 1787792 1787863 1787792 ID=Msa0970320-mRNA-1:exon:895;Parent=Msa0970320-mRNA-1
chr6_4 exon 1787961 1788074 1787961 ID=Msa0970320-mRNA-1:exon:894;Parent=Msa0970320-mRNA-1
chr6_4 exon 1788160 1788249 1788160 ID=Msa0970320-mRNA-1:exon:893;Parent=Msa0970320-mRNA-1
chr6_4 CDS 1788160 1788249 1788160 ID=Msa0970320-mRNA-1:cds;Parent=Msa0970320-mRNA-1
chr6_4 CDS 1787961 1788074 1787961 ID=Msa0970320-mRNA-1:cds;Parent=Msa0970320-mRNA-1
chr6_4 CDS 1787792 1787863 1787792 ID=Msa0970320-mRNA-1:cds;Parent=Msa0970320-mRNA-1
chr6_4 CDS 1787061 1787246 1787061 ID=Msa0970320-mRNA-1:cds;Parent=Msa0970320-mRNA-1
chr6_4 CDS 1786773 1786876 1786773 ID=Msa0970320-mRNA-1:cds;Parent=Msa0970320-mRNA-1
chr6_4 CDS 1786549 1786597 1786549 ID=Msa0970320-mRNA-1:cds;Parent=Msa0970320-mRNA-1
chr6_4 CDS 1786390 1786455 1786390 ID=Msa0970320-mRNA-1:cds;Parent=Msa0970320-mRNA-1
chr6_4 CDS 1784495 1785262 1784495 ID=Msa0970320-mRNA-1:cds;Parent=Msa0970320-mRNA-1
chr6_4 CDS 1783407 1783955 1783407 ID=Msa0970320-mRNA-1:cds;Parent=Msa0970320-mRNA-1
chr6_4 three_prime_UTR 1783088 1783406 1783088 ID=Msa0970320-mRNA-1:three_prime_utr;Parent=Msa0970320-mRNA-1
Gene Sequence

>Msa0970320

CAGGTACTACTCAGAGAGACCATAGGATTTGATTCATTGATATTGATTTTGAAGCTGAGAGGAAGTTCTTATTCTTTTACTCAACAAAAGACAATCAATCTACTCAGTGCATTAGAAACCATTAAATTGCTACTAAAGGGAGGTTCTGAGGCTGATCCTGGGAAAGATGCTAATAAACAGAAAAATAAGACAGCTCTGGTTCAGAAAAAGGTACTGGACAGTATGTTGATATTAGGTGTTGAAAGCCAATGGGTACCTGTTGCAGTTCGCTGTGCGGCATTGAGATGTATTGGGGATTTAATTGCTGGAGATTCAAAGAATCTTGATCTTCTTGCTAGCAAAGTTCTTGGAGAGGAGCCGCAGGCCGAACCTGCCCTGAATTCTATACTCAGAATAATTTTGAGGTCTTCTAGCATGCAAGAGTTCATTGCCGCTGATGATGTTTTCAAAAACTTTTGTGAGAAAAATGCTGATGGCCAAGCAATGCTAGCGTCTACGCTAATTCCACAACCATATTCCATAAATCATTCATTCCATGAGGAGGATGTTCATATGTCTTTTGGAAGCATGCTATTACACGGTCTTACGTTGGGTGAAAATGATGGTGATCTTGAGACTTGTAGCAGAGCTGCTAGTGTTCTATCTCATATATTAAAGGACAATCTCCAATGCAAGGAAAGGGTTTTGCGAATTGAAATCGAGGCACCCATGCAATCATTAGGAGCTGCAGAACCACTAATGCATCGAATGGTGAAATATTTGGCCCTCACCTCTTCAATGAAATCCAAAGATGGAAAGTCTAATCCATCGGGAAATTCATACGCTCAAGCTATTATTTTGAAATTGCTGGTTACCTGGCTAGCAGATTGCCCCAATGCAGTGCACTGCTTCCTAGATGCTCGACCACACCTTACTTATCTTCTTGAGCTAGTATCAAATCTGTCAGAAACAGTTTGTATAAGGGGTTTTGCAGCAGTTGTGTTGGGTGAATGTGTGATCTATAACAAATCCACAGATAGCGGGAAAGATGCATTTGCCATTGTTGATATAATAAGTCAGAAAATTGGGCTTAGTTCGTACTTCTTAAAATTTGATGAGATGCACAAGAGTTTTGTTTTCGCTAATGTGGGGTCATCATTCACACATAGATCGTTCTCGAGATCTTCAGCAGCTAGCATGGCAGATATTCAAGATGTAGATGAGAATGATTTGTCAGAAAAGAAAAATACAGATGATCCAATTCTCACTACAATTTTGGATTCTTACTTCGTGAATTTTGTGAAAAGACTGGAGGCAAATATTAGAGAACAGATTGTGGAGGTTTATAGTCGTCCAAAAATCCAGGTAACAGTAGTGCCAGAAGAAATAGAGCAGAAGAGAGGCGAAAGTGATGGTGAATATATAAAGCGGCTGAAAGCTTTCGTTGAGAAGCAACACTCTGAGATACAGGATCTTGTTATTCGAAATGGTACATTGGCCGAGGACCTGGCTAAGACAGGTAGTAGTTTCCAGTCTGAGCAAAGAGTAAGTGGAGGCATGGACAGAGTCCAAATAGAGACACTCCGTAGAGATCTCCAAGAAGCATCTAAAAGGTTGGAGATGCTTAAGGCAGAAAAGGCCAAAATTGAATCCGAGGCAACTATGTATCAGAATTTAGCTGGAAAGATGGAATCTGATCTACAGAGTCTGTCCGATGCATACAATAGCCTTGAGCAATCTAATCTCCAACTGGAGAATGAGGTGAAAGCACTGAGGGGAGAAGGACCCTCAACATTCCCGGATGTGGAGGCAATAAAAGCTGAAGCAAGGGAAAAAGCTCTGAAGGAGAGTGAAGGTGAACTGAATGATCTGCTTGTATGCCTCGGGCAAGAACAAAGCAAGGTGGATAGACTTAGTGCTAGGTTGTTGGAGTTGGGAGAGGATGTTGACCAACTACTTGAAGGCATTGGAGATGATGCTGGAGCTGCTGAAGATGTCGAAGACGAGGATGACGAGTAA

Protein sequence

>Msa0970320

QVLLRETIGFDSLILILKLRGSSYSFTQQKTINLLSALETIKLLLKGGSEADPGKDANKQKNKTALVQKKVLDSMLILGVESQWVPVAVRCAALRCIGDLIAGDSKNLDLLASKVLGEEPQAEPALNSILRIILRSSSMQEFIAADDVFKNFCEKNADGQAMLASTLIPQPYSINHSFHEEDVHMSFGSMLLHGLTLGENDGDLETCSRAASVLSHILKDNLQCKERVLRIEIEAPMQSLGAAEPLMHRMVKYLALTSSMKSKDGKSNPSGNSYAQAIILKLLVTWLADCPNAVHCFLDARPHLTYLLELVSNLSETVCIRGFAAVVLGECVIYNKSTDSGKDAFAIVDIISQKIGLSSYFLKFDEMHKSFVFANVGSSFTHRSFSRSSAASMADIQDVDENDLSEKKNTDDPILTTILDSYFVNFVKRLEANIREQIVEVYSRPKIQVTVVPEEIEQKRGESDGEYIKRLKAFVEKQHSEIQDLVIRNGTLAEDLAKTGSSFQSEQRVSGGMDRVQIETLRRDLQEASKRLEMLKAEKAKIESEATMYQNLAGKMESDLQSLSDAYNSLEQSNLQLENEVKALRGEGPSTFPDVEAIKAEAREKALKESEGELNDLLVCLGQEQSKVDRLSARLLELGEDVDQLLEGIGDDAGAAEDVEDEDDE*