Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445450 | XP_024634335.1 | 91.228 | 114 | 10 | 0 | 17 | 130 | 15 | 128 | 3.76e-69 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445450 | A0A396IQ09 | 91.228 | 114 | 10 | 0 | 17 | 130 | 15 | 128 | 1.80e-69 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0406930 | Msa0445450 | 0.897788 | 1.000467e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445450 | MtrunA17_Chr3g0085891 | 91.228 | 114 | 10 | 0 | 17 | 130 | 15 | 128 | 3.46e-73 | 218 |
| Msa0445450 | MtrunA17_Chr1g0160891 | 66.176 | 136 | 37 | 4 | 17 | 147 | 17 | 148 | 8.09e-53 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTAAATGTTGAAGATTC+TGG | 0.196464 | 3_3:-19602625 | Msa0445450:CDS |
| TCCTTCTCCTTCAAGAAATA+AGG | 0.229085 | 3_3:+19605723 | None:intergenic |
| TGATGTTAAACACGGGAAAA+TGG | 0.252688 | 3_3:-19605808 | Msa0445450:CDS |
| CATATGAAATCACCATATTC+TGG | 0.262324 | 3_3:+19604868 | None:intergenic |
| CGGGGACGAGGACGGGGAAG+AGG | 0.288193 | 3_3:-19607006 | Msa0445450:CDS |
| TTGGAACCGTCGCCGTTTAC+AGG | 0.294903 | 3_3:-19607181 | Msa0445450:intron |
| TAGCATGGACTATTGATTCT+TGG | 0.307571 | 3_3:-19602450 | Msa0445450:three_prime_UTR |
| CGTCAATGGAACCCAGAATA+TGG | 0.322177 | 3_3:-19604880 | Msa0445450:intron |
| TGTGTTAAGGAGTTGGTTCC+AGG | 0.329012 | 3_3:-19605059 | Msa0445450:intron |
| TCATAACGTAGCGAACTTCT+TGG | 0.339090 | 3_3:-19607208 | None:intergenic |
| TCTTCTGTAGACTTCGTAAA+TGG | 0.339559 | 3_3:-19607049 | Msa0445450:intron |
| ATGGGGACGGGGACGAGGAC+GGG | 0.362568 | 3_3:-19607013 | Msa0445450:CDS |
| GTCATCAACTACAATTCTTC+TGG | 0.366455 | 3_3:+19602353 | None:intergenic |
| GTAGGCATACGTGCTCTTCC+AGG | 0.366856 | 3_3:+19604610 | None:intergenic |
| TGGGGACGGGGACGAGGACG+GGG | 0.369102 | 3_3:-19607012 | Msa0445450:CDS |
| CTATGAGACAGTTGCTTGAA+TGG | 0.378644 | 3_3:-19605779 | Msa0445450:CDS |
| ATTTAAATGTTGAAGATTCT+GGG | 0.382185 | 3_3:-19602624 | Msa0445450:CDS |
| GGCAGAGGAGGATGGGGACG+GGG | 0.384213 | 3_3:-19607024 | Msa0445450:CDS |
| GGAGGATGGGGACGGGGACG+AGG | 0.384499 | 3_3:-19607018 | Msa0445450:CDS |
| TGGCAGAGGAGGATGGGGAC+GGG | 0.402946 | 3_3:-19607025 | Msa0445450:CDS |
| TATGAGACAGTTGCTTGAAT+GGG | 0.420424 | 3_3:-19605778 | Msa0445450:CDS |
| GTAAAGAATCACTACAGTTC+AGG | 0.435840 | 3_3:+19602496 | None:intergenic |
| CGACGAATGTGTTAAGGAGT+TGG | 0.450423 | 3_3:-19605066 | Msa0445450:CDS |
| TACTCGTGATTCTCTGCCAC+AGG | 0.453424 | 3_3:-19605099 | Msa0445450:CDS |
| GAAGGAGAAGGAAGAATTGA+AGG | 0.454002 | 3_3:-19605712 | Msa0445450:CDS |
| AATGGCTGGCAGAGGAGGAT+GGG | 0.472479 | 3_3:-19607031 | Msa0445450:CDS |
| AGTGGCTCCTTATTTCTTGA+AGG | 0.473271 | 3_3:-19605730 | Msa0445450:CDS |
| CTGGCAGAGGAGGATGGGGA+CGG | 0.475505 | 3_3:-19607026 | Msa0445450:CDS |
| TAGCGAACTTCTTGGAAAGT+TGG | 0.476575 | 3_3:-19607200 | Msa0445450:five_prime_UTR |
| CTTAATTGTCAGGGCGCAAA+AGG | 0.477030 | 3_3:-19605163 | Msa0445450:intron |
| ATATGAAATCACCATATTCT+GGG | 0.482590 | 3_3:+19604869 | None:intergenic |
| AAATGGCTGGCAGAGGAGGA+TGG | 0.482599 | 3_3:-19607032 | Msa0445450:CDS |
| ATTGCTAGAGAAGGAGCTCC+TGG | 0.499023 | 3_3:-19604628 | Msa0445450:CDS |
| AATGTTGAAGATTCTGGGGA+TGG | 0.506964 | 3_3:-19602619 | Msa0445450:intron |
| GATGGGGACGGGGACGAGGA+CGG | 0.511375 | 3_3:-19607014 | Msa0445450:CDS |
| AAACTAAGCAGATGCTGAGC+CGG | 0.515920 | 3_3:-19604909 | Msa0445450:CDS |
| GAAGAATTGTAGTTGATGAC+AGG | 0.516196 | 3_3:-19602350 | Msa0445450:three_prime_UTR |
| ATGGCTGGCAGAGGAGGATG+GGG | 0.521277 | 3_3:-19607030 | Msa0445450:CDS |
| TCCTTATTTCTTGAAGGAGA+AGG | 0.526141 | 3_3:-19605724 | Msa0445450:CDS |
| CTGTAGACTTCGTAAATGGC+TGG | 0.529434 | 3_3:-19607045 | Msa0445450:intron |
| GTCCGAGAGATACCTGTAAA+CGG | 0.535958 | 3_3:+19607169 | None:intergenic |
| TCGTAAATGGCTGGCAGAGG+AGG | 0.549677 | 3_3:-19607036 | Msa0445450:exon |
| ACTTCGTAAATGGCTGGCAG+AGG | 0.569519 | 3_3:-19607039 | Msa0445450:exon |
| TGGCTGCTTCTATACTAGCA+TGG | 0.576173 | 3_3:-19602465 | Msa0445450:three_prime_UTR |
| AAAACTTGCATTGCTAGAGA+AGG | 0.581983 | 3_3:-19604637 | Msa0445450:CDS |
| AAGGAGAAGGAAGAATTGAA+GGG | 0.585858 | 3_3:-19605711 | Msa0445450:intron |
| AAATTACAAATGGAAGTGGT+CGG | 0.588602 | 3_3:+19606974 | None:intergenic |
| GATTTACCTGATGTTAAACA+CGG | 0.592842 | 3_3:-19605816 | Msa0445450:CDS |
| GTGATTCTTTACTCATCCTG+TGG | 0.597923 | 3_3:-19602485 | Msa0445450:three_prime_UTR |
| ATGAGACAGTTGCTTGAATG+GGG | 0.600528 | 3_3:-19605777 | Msa0445450:CDS |
| ATTTACCTGATGTTAAACAC+GGG | 0.607970 | 3_3:-19605815 | Msa0445450:CDS |
| GCTAGTATAGAAGCAGCCAC+AGG | 0.632363 | 3_3:+19602469 | None:intergenic |
| TTTAAATGTTGAAGATTCTG+GGG | 0.632918 | 3_3:-19602623 | Msa0445450:CDS |
| TCAAGCAGCAAGTTTAACAA+AGG | 0.635144 | 3_3:+19602376 | None:intergenic |
| GAGATACCTGTAAACGGCGA+CGG | 0.655045 | 3_3:+19607175 | None:intergenic |
| TCGTCGAAAACTAAAACCTG+TGG | 0.697134 | 3_3:+19605083 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAATTAAAAAAACA+AGG | + | chr3_3:19602794-19602813 | None:intergenic | 10.0% |
| !! | AACAATAAATTTACAATCAA+AGG | + | chr3_3:19602389-19602408 | None:intergenic | 15.0% |
| !!! | AATTAAGTTGTTTATTGAAA+CGG | + | chr3_3:19602606-19602625 | None:intergenic | 15.0% |
| !!! | TTTTGATAGATATTTTAAAG+TGG | - | chr3_3:19603782-19603801 | Msa0445450:intron | 15.0% |
| !! | CTTTAAACAATAATATATCA+TGG | + | chr3_3:19604186-19604205 | None:intergenic | 15.0% |
| !!! | CAAATAATTTAGAACTAAAT+TGG | - | chr3_3:19604586-19604605 | Msa0445450:intron | 15.0% |
| !! | TTGTTAACGTTAAAAAATAA+GGG | + | chr3_3:19604954-19604973 | None:intergenic | 15.0% |
| !! | TTTGTTAACGTTAAAAAATA+AGG | + | chr3_3:19604955-19604974 | None:intergenic | 15.0% |
| !!! | TTTTTTAACGTTAACAAAAT+AGG | - | chr3_3:19604957-19604976 | Msa0445450:intron | 15.0% |
| !!! | TTTTTAACGTTAACAAAATA+GGG | - | chr3_3:19604958-19604977 | Msa0445450:intron | 15.0% |
| !! | AAAAGAAATCATATTAAACT+TGG | - | chr3_3:19606571-19606590 | Msa0445450:intron | 15.0% |
| !! | GAAAATGAAAAAAAAAATCT+TGG | + | chr3_3:19606826-19606845 | None:intergenic | 15.0% |
| !!! | TTTTTCATTTTCGTATTAAA+AGG | - | chr3_3:19606834-19606853 | Msa0445450:intron | 15.0% |
| !! | TTGATTTATTTATGCTTATC+TGG | + | chr3_3:19603440-19603459 | None:intergenic | 20.0% |
| !! | AAATGTAAGGAATTATAGTA+CGG | + | chr3_3:19603489-19603508 | None:intergenic | 20.0% |
| !! | GAAATATAGAAATAGTTATG+AGG | + | chr3_3:19603559-19603578 | None:intergenic | 20.0% |
| !! | ACAGAAAATAGATAATTACA+CGG | + | chr3_3:19603655-19603674 | None:intergenic | 20.0% |
| !! | TCACAATATATATCATGTAA+AGG | + | chr3_3:19603859-19603878 | None:intergenic | 20.0% |
| !!! | ATTGTTTAAAGTATCTAACA+TGG | - | chr3_3:19604195-19604214 | Msa0445450:intron | 20.0% |
| !!! | GAATATTTTCAATGCTTATA+TGG | - | chr3_3:19604300-19604319 | Msa0445450:intron | 20.0% |
| !!! | CACATTTTTAATGTTATAAC+AGG | - | chr3_3:19605258-19605277 | Msa0445450:intron | 20.0% |
| !!! | ATTTTTAATGTTATAACAGG+AGG | - | chr3_3:19605261-19605280 | Msa0445450:intron | 20.0% |
| !! | TGTTGGAATTATAGAATAAA+GGG | - | chr3_3:19605526-19605545 | Msa0445450:intron | 20.0% |
| !! | TTGTTAGTTAGATTTCTATT+TGG | - | chr3_3:19605633-19605652 | Msa0445450:intron | 20.0% |
| !! | TGTTAGTTAGATTTCTATTT+GGG | - | chr3_3:19605634-19605653 | Msa0445450:intron | 20.0% |
| !!! | TTCAATTTGAAAATTTTGTG+AGG | + | chr3_3:19606087-19606106 | None:intergenic | 20.0% |
| !!! | GTTTTTTTAACATTTAGAGA+CGG | + | chr3_3:19606208-19606227 | None:intergenic | 20.0% |
| !! | AAATGTTAAAAAAACCTCTA+CGG | - | chr3_3:19606213-19606232 | Msa0445450:intron | 20.0% |
| !! | TATACAGTTTGTAATGATAT+TGG | + | chr3_3:19606457-19606476 | None:intergenic | 20.0% |
| !! | ATGTAAGTTGTTTGTAAATT+TGG | - | chr3_3:19606662-19606681 | Msa0445450:intron | 20.0% |
| !!! | TTTGGATTTTAGAAATGTAT+AGG | - | chr3_3:19606680-19606699 | Msa0445450:intron | 20.0% |
| !!! | TTGGATTTTAGAAATGTATA+GGG | - | chr3_3:19606681-19606700 | Msa0445450:intron | 20.0% |
| !!! | CTGCAAAATTTTAATTTAGT+TGG | + | chr3_3:19606864-19606883 | None:intergenic | 20.0% |
| !! | ATTTAAATGTTGAAGATTCT+GGG | - | chr3_3:19606906-19606925 | Msa0445450:intron | 20.0% |
| ! | AAATATTTCTCGTATCTATG+TGG | - | chr3_3:19602716-19602735 | Msa0445450:intron | 25.0% |
| !! | AAAACAAGGTCTTATAATCT+AGG | + | chr3_3:19602780-19602799 | None:intergenic | 25.0% |
| ! | GGACTTATTGAAAACAAATT+AGG | - | chr3_3:19602896-19602915 | Msa0445450:intron | 25.0% |
| ! | GTTTCTTTCATAAACTATGA+TGG | - | chr3_3:19603220-19603239 | Msa0445450:intron | 25.0% |
| ! | TTATAGACATGCAATAAGAT+GGG | - | chr3_3:19603270-19603289 | Msa0445450:intron | 25.0% |
| ! | ACATGATATATATTGTGAGA+TGG | - | chr3_3:19603861-19603880 | Msa0445450:intron | 25.0% |
| ! | TGATAAAGAAAACCACAATT+TGG | - | chr3_3:19603913-19603932 | Msa0445450:intron | 25.0% |
| !! | GTCCTCTAAAAATTTGAATA+TGG | - | chr3_3:19603935-19603954 | Msa0445450:intron | 25.0% |
| !!! | AGCCATATTCAAATTTTTAG+AGG | + | chr3_3:19603940-19603959 | None:intergenic | 25.0% |
| !!! | GGTCAAATTTTAATCTTTGA+GGG | + | chr3_3:19604003-19604022 | None:intergenic | 25.0% |
| !!! | TGGTCAAATTTTAATCTTTG+AGG | + | chr3_3:19604004-19604023 | None:intergenic | 25.0% |
| !! | GTGATACTTTTGTATATTGA+AGG | - | chr3_3:19604084-19604103 | Msa0445450:intron | 25.0% |
| !! | ATGTCTTTGGAAGATTATTA+CGG | - | chr3_3:19604120-19604139 | Msa0445450:intron | 25.0% |
| !! | GAATAATGGAATAGGATTTA+CGG | - | chr3_3:19604497-19604516 | Msa0445450:intron | 25.0% |
| !! | AATAATGGAATAGGATTTAC+GGG | - | chr3_3:19604498-19604517 | Msa0445450:intron | 25.0% |
| !! | TACTTTTCTTTATGCATTTG+AGG | - | chr3_3:19604553-19604572 | Msa0445450:intron | 25.0% |
| !! | AGAACTAAATTGGTAATTTC+AGG | - | chr3_3:19604596-19604615 | Msa0445450:intron | 25.0% |
| ! | ATATGAAATCACCATATTCT+GGG | + | chr3_3:19604664-19604683 | None:intergenic | 25.0% |
| ! | TTGATCATTCTATGTACATA+TGG | - | chr3_3:19604799-19604818 | Msa0445450:intron | 25.0% |
| ! | ATATTATCCATGTTATGAGT+TGG | - | chr3_3:19604829-19604848 | Msa0445450:intron | 25.0% |
| ! | TTAAGGAATCAAAAAATGAC+TGG | + | chr3_3:19604993-19605012 | None:intergenic | 25.0% |
| ! | TAATATTGTGTTACGAGATA+TGG | - | chr3_3:19605036-19605055 | Msa0445450:intron | 25.0% |
| ! | AATTGACAAAACTATCCATT+AGG | - | chr3_3:19605384-19605403 | Msa0445450:intron | 25.0% |
| ! | GTGTTGGAATTATAGAATAA+AGG | - | chr3_3:19605525-19605544 | Msa0445450:intron | 25.0% |
| !! | TCTGTTGTATTTTCTGTTAT+TGG | - | chr3_3:19605665-19605684 | Msa0445450:intron | 25.0% |
| ! | GCATATATCTTAGTTGTAAT+TGG | - | chr3_3:19605779-19605798 | Msa0445450:CDS | 25.0% |
| ! | GAAAGAGAGTAAACATAAAA+AGG | - | chr3_3:19605902-19605921 | Msa0445450:intron | 25.0% |
| ! | AAAATTAACACTCAAAGTAG+AGG | + | chr3_3:19606017-19606036 | None:intergenic | 25.0% |
| !!! | CTGTTTTGAGATAAAATTAG+TGG | - | chr3_3:19606163-19606182 | Msa0445450:intron | 25.0% |
| ! | ATAGTAAGCTTCATCAATTA+TGG | - | chr3_3:19606268-19606287 | Msa0445450:intron | 25.0% |
| ! | GAATGGTAAACATAACATTT+GGG | + | chr3_3:19606345-19606364 | None:intergenic | 25.0% |
| ! | AGAATGGTAAACATAACATT+TGG | + | chr3_3:19606346-19606365 | None:intergenic | 25.0% |
| ! | AGTATGTGTAATATTTGTAG+GGG | + | chr3_3:19606534-19606553 | None:intergenic | 25.0% |
| ! | CAGTATGTGTAATATTTGTA+GGG | + | chr3_3:19606535-19606554 | None:intergenic | 25.0% |
| ! | ACAGTATGTGTAATATTTGT+AGG | + | chr3_3:19606536-19606555 | None:intergenic | 25.0% |
| ! | GATTTAAATGTTGAAGATTC+TGG | - | chr3_3:19606905-19606924 | Msa0445450:intron | 25.0% |
| ! | TTTAAATGTTGAAGATTCTG+GGG | - | chr3_3:19606907-19606926 | Msa0445450:intron | 25.0% |
| AAATTACAAATGGAAGTGGT+CGG | + | chr3_3:19602559-19602578 | None:intergenic | 30.0% | |
| GGAAAAATTACAAATGGAAG+TGG | + | chr3_3:19602563-19602582 | None:intergenic | 30.0% | |
| ! | TCCATTTGTAATTTTTCCAC+AGG | - | chr3_3:19602565-19602584 | Msa0445450:intron | 30.0% |
| ACCTGTGGAAAAATTACAAA+TGG | + | chr3_3:19602569-19602588 | None:intergenic | 30.0% | |
| ! | GATTTTAAATTCTGCTAACG+AGG | - | chr3_3:19602829-19602848 | Msa0445450:intron | 30.0% |
| GAATATTTGTGATAGAGAGA+AGG | - | chr3_3:19602872-19602891 | Msa0445450:intron | 30.0% | |
| AATCTATCACATAGAGCTTA+TGG | - | chr3_3:19602982-19603001 | Msa0445450:intron | 30.0% | |
| CTTATAGACATGCAATAAGA+TGG | - | chr3_3:19603269-19603288 | Msa0445450:intron | 30.0% | |
| TATAGACATGCAATAAGATG+GGG | - | chr3_3:19603271-19603290 | Msa0445450:intron | 30.0% | |
| !!! | CTTCTTTGTTTTTTTGTCCT+AGG | + | chr3_3:19603363-19603382 | None:intergenic | 30.0% |
| !! | ATAACACTTTGAGACTGTTT+GGG | + | chr3_3:19603413-19603432 | None:intergenic | 30.0% |
| GATTTACCTGATGTTAAACA+CGG | - | chr3_3:19603714-19603733 | Msa0445450:intron | 30.0% | |
| ATTTACCTGATGTTAAACAC+GGG | - | chr3_3:19603715-19603734 | Msa0445450:intron | 30.0% | |
| !! | ATTTTTAGAGGACCAAATTG+TGG | + | chr3_3:19603928-19603947 | None:intergenic | 30.0% |
| ! | TTGGTGATAAATTCTCAACA+TGG | + | chr3_3:19604024-19604043 | None:intergenic | 30.0% |
| TCACCAAATTAGAATTAGAG+TGG | - | chr3_3:19604037-19604056 | Msa0445450:intron | 30.0% | |
| TCACCACTCTAATTCTAATT+TGG | + | chr3_3:19604043-19604062 | None:intergenic | 30.0% | |
| !! | GTATATTGAAGGCATTGATT+TGG | - | chr3_3:19604095-19604114 | Msa0445450:intron | 30.0% |
| ATGTGGCTTTCAAATGATTA+GGG | + | chr3_3:19604151-19604170 | None:intergenic | 30.0% | |
| AATGTGGCTTTCAAATGATT+AGG | + | chr3_3:19604152-19604171 | None:intergenic | 30.0% | |
| ATCATTTGAAAGCCACATTT+AGG | - | chr3_3:19604153-19604172 | Msa0445450:intron | 30.0% | |
| CATGGAATAAATCCTAAATG+TGG | + | chr3_3:19604168-19604187 | None:intergenic | 30.0% | |
| ATAAGGAATGAAATACTTCC+TGG | - | chr3_3:19604231-19604250 | Msa0445450:intron | 30.0% | |
| CAGATATTTAGGGACAAATA+TGG | + | chr3_3:19604328-19604347 | None:intergenic | 30.0% | |
| CATATTTGTCCCTAAATATC+TGG | - | chr3_3:19604326-19604345 | Msa0445450:intron | 30.0% | |
| TGACAATTAAGCAAGAAAAG+CGG | + | chr3_3:19604358-19604377 | None:intergenic | 30.0% | |
| ! | CTTTTCTTGCTTAATTGTCA+GGG | - | chr3_3:19604358-19604377 | Msa0445450:intron | 30.0% |
| !!! | GGAAATGGTTATGTTTTTTG+TGG | - | chr3_3:19604519-19604538 | Msa0445450:intron | 30.0% |
| CATATGAAATCACCATATTC+TGG | + | chr3_3:19604665-19604684 | None:intergenic | 30.0% | |
| GTTATTCAAATTGAAAGAGC+AGG | - | chr3_3:19604737-19604756 | Msa0445450:intron | 30.0% | |
| ATGATCAATACTCAGTAGAA+TGG | + | chr3_3:19604787-19604806 | None:intergenic | 30.0% | |
| ATTCTATGTACATATGGTCA+TGG | - | chr3_3:19604805-19604824 | Msa0445450:intron | 30.0% | |
| TTCTATGTACATATGGTCAT+GGG | - | chr3_3:19604806-19604825 | Msa0445450:intron | 30.0% | |
| TAATAAGATGTTTGTGTTGC+AGG | - | chr3_3:19604864-19604883 | Msa0445450:intron | 30.0% | |
| AAAATAAGGGAAAGAATCGT+AGG | + | chr3_3:19604941-19604960 | None:intergenic | 30.0% | |
| AACTCACACTTAATCAGTTA+AGG | + | chr3_3:19605010-19605029 | None:intergenic | 30.0% | |
| TCTCGTAACACAATATTACT+CGG | + | chr3_3:19605034-19605053 | None:intergenic | 30.0% | |
| ! | GAATTCTTTTAAATCCTGTG+CGG | - | chr3_3:19605080-19605099 | Msa0445450:CDS | 30.0% |
| ! | AATTCTTTTAAATCCTGTGC+GGG | - | chr3_3:19605081-19605100 | Msa0445450:CDS | 30.0% |
| ! | TAAAAATGTGTTGACAGCAT+AGG | + | chr3_3:19605248-19605267 | None:intergenic | 30.0% |
| CAGTAATAAGTGATAACAGT+GGG | + | chr3_3:19605312-19605331 | None:intergenic | 30.0% | |
| TCAGTAATAAGTGATAACAG+TGG | + | chr3_3:19605313-19605332 | None:intergenic | 30.0% | |
| ! | TTTGTTACCTACATTTTGTC+AGG | - | chr3_3:19605462-19605481 | Msa0445450:intron | 30.0% |
| !! | TTTCTTTGAAATCCAACTCT+TGG | - | chr3_3:19605869-19605888 | Msa0445450:intron | 30.0% |
| !! | TTCTTTGAAATCCAACTCTT+GGG | - | chr3_3:19605870-19605889 | Msa0445450:intron | 30.0% |
| ATGTTTACTCTCTTTCTGTT+AGG | + | chr3_3:19605898-19605917 | None:intergenic | 30.0% | |
| AGAGAGTAAACATAAAAAGG+AGG | - | chr3_3:19605905-19605924 | Msa0445450:intron | 30.0% | |
| TGGAACTGATGATTATGATA+AGG | - | chr3_3:19605980-19605999 | Msa0445450:intron | 30.0% | |
| ! | TCTTTTCACAAGTTCAAGAA+TGG | + | chr3_3:19606041-19606060 | None:intergenic | 30.0% |
| ATAGTACCATGAAAAGTAGA+TGG | - | chr3_3:19606307-19606326 | Msa0445450:intron | 30.0% | |
| TAGTACCATGAAAAGTAGAT+GGG | - | chr3_3:19606308-19606327 | Msa0445450:intron | 30.0% | |
| ATGTTATGTTTACCATTCTG+AGG | - | chr3_3:19606347-19606366 | Msa0445450:intron | 30.0% | |
| ! | AGAGGAATTGTCTTTTATGA+TGG | + | chr3_3:19606418-19606437 | None:intergenic | 30.0% |
| AAAAGACAATTCCTCTACAT+AGG | - | chr3_3:19606422-19606441 | Msa0445450:intron | 30.0% | |
| AGTTGAGTATATACGAAACT+TGG | - | chr3_3:19606501-19606520 | Msa0445450:intron | 30.0% | |
| ! | ATGATTTCTTTTCCTTCACA+CGG | + | chr3_3:19606563-19606582 | None:intergenic | 30.0% |
| CTTACATTGAATGCTGAAAT+AGG | + | chr3_3:19606649-19606668 | None:intergenic | 30.0% | |
| CACACTCAAAACAAAAAAGA+GGG | + | chr3_3:19606766-19606785 | None:intergenic | 30.0% | |
| TCTTCTGTAGACTTCGTAAA+TGG | - | chr3_3:19602481-19602500 | Msa0445450:three_prime_UTR | 35.0% | |
| ! | ACGCTTTCAATCAAAAGTGT+CGG | + | chr3_3:19602642-19602661 | None:intergenic | 35.0% |
| TATTTGTGATAGAGAGAAGG+TGG | - | chr3_3:19602875-19602894 | Msa0445450:intron | 35.0% | |
| !! | CATAACACTTTGAGACTGTT+TGG | + | chr3_3:19603414-19603433 | None:intergenic | 35.0% |
| GTAAGGAATTATAGTACGGA+TGG | + | chr3_3:19603485-19603504 | None:intergenic | 35.0% | |
| TGCAGAGAACAGAAAATGTA+AGG | + | chr3_3:19603502-19603521 | None:intergenic | 35.0% | |
| CTTTATCAATCTGATGCTAC+AGG | - | chr3_3:19603686-19603705 | Msa0445450:intron | 35.0% | |
| ! | ATTTTCCCGTGTTTAACATC+AGG | + | chr3_3:19603723-19603742 | None:intergenic | 35.0% |
| TGATGTTAAACACGGGAAAA+TGG | - | chr3_3:19603722-19603741 | Msa0445450:intron | 35.0% | |
| TATGAGACAGTTGCTTGAAT+GGG | - | chr3_3:19603752-19603771 | Msa0445450:intron | 35.0% | |
| ! | TCCTTATTTCTTGAAGGAGA+AGG | - | chr3_3:19603806-19603825 | Msa0445450:intron | 35.0% |
| TCCTTCTCCTTCAAGAAATA+AGG | + | chr3_3:19603810-19603829 | None:intergenic | 35.0% | |
| AAGGAGAAGGAAGAATTGAA+GGG | - | chr3_3:19603819-19603838 | Msa0445450:intron | 35.0% | |
| ! | GTGTGATGACAAGTTTTTGT+GGG | + | chr3_3:19603976-19603995 | None:intergenic | 35.0% |
| ! | AGTGTGATGACAAGTTTTTG+TGG | + | chr3_3:19603977-19603996 | None:intergenic | 35.0% |
| !! | CATTGATTTGGTGATGTCTT+TGG | - | chr3_3:19604107-19604126 | Msa0445450:intron | 35.0% |
| GACAATTAAGCAAGAAAAGC+GGG | + | chr3_3:19604357-19604376 | None:intergenic | 35.0% | |
| ! | GCTTTTCTTGCTTAATTGTC+AGG | - | chr3_3:19604357-19604376 | Msa0445450:intron | 35.0% |
| CAGAGAATCACGAGTAAAAA+TGG | + | chr3_3:19604427-19604446 | None:intergenic | 35.0% | |
| ! | AGTTTTCGACGAATGTGTTA+AGG | - | chr3_3:19604458-19604477 | Msa0445450:intron | 35.0% |
| TTGGTTCCAGGTATGAATAA+TGG | - | chr3_3:19604483-19604502 | Msa0445450:intron | 35.0% | |
| CCTATTCCATTATTCATACC+TGG | + | chr3_3:19604492-19604511 | None:intergenic | 35.0% | |
| ! | CCAGGTATGAATAATGGAAT+AGG | - | chr3_3:19604489-19604508 | Msa0445450:intron | 35.0% |
| ! | CTTTATGCATTTGAGGTTTC+TGG | - | chr3_3:19604560-19604579 | Msa0445450:intron | 35.0% |
| ! | TGAAAGAGCAGGATCTATTT+TGG | - | chr3_3:19604748-19604767 | Msa0445450:intron | 35.0% |
| TCAATACTCAGTAGAATGGA+AGG | + | chr3_3:19604783-19604802 | None:intergenic | 35.0% | |
| AAAACTTGCATTGCTAGAGA+AGG | - | chr3_3:19604893-19604912 | Msa0445450:CDS | 35.0% | |
| TGTGTTACGAGATATGGATA+TGG | - | chr3_3:19605042-19605061 | Msa0445450:intron | 35.0% | |
| TAATCTGACCAACACATGTA+TGG | - | chr3_3:19605125-19605144 | Msa0445450:CDS | 35.0% | |
| GTAATACACCATACATGTGT+TGG | + | chr3_3:19605136-19605155 | None:intergenic | 35.0% | |
| ! | GTTGTCGAAGTGTTAAACTA+AGG | + | chr3_3:19605171-19605190 | None:intergenic | 35.0% |
| AAGACAGTAATAAACGGAAC+AGG | + | chr3_3:19605289-19605308 | None:intergenic | 35.0% | |
| AGTGGGAAGACAGTAATAAA+CGG | + | chr3_3:19605295-19605314 | None:intergenic | 35.0% | |
| ! | GTCTAGAACAGTAAACTTCA+CGG | - | chr3_3:19605421-19605440 | Msa0445450:intron | 35.0% |
| GATTTCACCTGACAAAATGT+AGG | + | chr3_3:19605472-19605491 | None:intergenic | 35.0% | |
| ATTCCAACACTTTCCTCTAA+AGG | + | chr3_3:19605515-19605534 | None:intergenic | 35.0% | |
| ! | CTGTTATTGGCTAGTTGTTA+TGG | - | chr3_3:19605678-19605697 | Msa0445450:intron | 35.0% |
| !! | TACAAAGAGAAAGGGGTATT+GGG | + | chr3_3:19605711-19605730 | None:intergenic | 35.0% |
| ! | TTACAAAGAGAAAGGGGTAT+TGG | + | chr3_3:19605712-19605731 | None:intergenic | 35.0% |
| CTTCTGTTACAAAGAGAAAG+GGG | + | chr3_3:19605718-19605737 | None:intergenic | 35.0% | |
| CCTTCTGTTACAAAGAGAAA+GGG | + | chr3_3:19605719-19605738 | None:intergenic | 35.0% | |
| ACCTTCTGTTACAAAGAGAA+AGG | + | chr3_3:19605720-19605739 | None:intergenic | 35.0% | |
| ! | TGCCAAAGATCCTTTTCTAA+GGG | + | chr3_3:19605762-19605781 | None:intergenic | 35.0% |
| ! | ATGCCAAAGATCCTTTTCTA+AGG | + | chr3_3:19605763-19605782 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTATAACCAGCGT+AGG | - | chr3_3:19605797-19605816 | Msa0445450:CDS | 35.0% |
| TGAAGAAAGTGAAGATGAAG+AGG | - | chr3_3:19605935-19605954 | Msa0445450:intron | 35.0% | |
| TGAAGAAGCAAAACCACATT+TGG | - | chr3_3:19606139-19606158 | Msa0445450:intron | 35.0% | |
| ATCTCAAAACAGACCAAATG+TGG | + | chr3_3:19606155-19606174 | None:intergenic | 35.0% | |
| AGTACCATGAAAAGTAGATG+GGG | - | chr3_3:19606309-19606328 | Msa0445450:intron | 35.0% | |
| ! | TGATTTCTTTTCCTTCACAC+GGG | + | chr3_3:19606562-19606581 | None:intergenic | 35.0% |
| TGTTAATACTTATGCACCAC+AGG | - | chr3_3:19606598-19606617 | Msa0445450:intron | 35.0% | |
| !!! | AGGTTTTTTACATGAGTCGA+AGG | + | chr3_3:19606629-19606648 | None:intergenic | 35.0% |
| AATGTATAGGGAGTAATGTG+CGG | - | chr3_3:19606693-19606712 | Msa0445450:intron | 35.0% | |
| CCACACTCAAAACAAAAAAG+AGG | + | chr3_3:19606767-19606786 | None:intergenic | 35.0% | |
| !!! | CCTCTTTTTTGTTTTGAGTG+TGG | - | chr3_3:19606764-19606783 | Msa0445450:intron | 35.0% |
| !!! | CTTTTTTGTTTTGAGTGTGG+TGG | - | chr3_3:19606767-19606786 | Msa0445450:intron | 35.0% |
| CTATCAACTTCGTAATTCTC+TGG | - | chr3_3:19606976-19606995 | Msa0445450:CDS | 35.0% | |
| GTAAAGAATCACTACAGTTC+AGG | + | chr3_3:19607037-19607056 | None:intergenic | 35.0% | |
| !! | TAGCATGGACTATTGATTCT+TGG | - | chr3_3:19607080-19607099 | Msa0445450:intron | 35.0% |
| TCAAGCAGCAAGTTTAACAA+AGG | + | chr3_3:19607157-19607176 | None:intergenic | 35.0% | |
| GTCATCAACTACAATTCTTC+TGG | + | chr3_3:19607180-19607199 | None:intergenic | 35.0% | |
| !! | GAAGAATTGTAGTTGATGAC+AGG | - | chr3_3:19607180-19607199 | Msa0445450:intron | 35.0% |
| TCTGTTATCATCACACTTGC+AGG | + | chr3_3:19602443-19602462 | None:intergenic | 40.0% | |
| TTGAACCTAAACACATGTGC+AGG | + | chr3_3:19602680-19602699 | None:intergenic | 40.0% | |
| GTTAGTCCAAGCAAACACTA+TGG | - | chr3_3:19603106-19603125 | Msa0445450:intron | 40.0% | |
| ACATGACCATAGTGTTTGCT+TGG | + | chr3_3:19603115-19603134 | None:intergenic | 40.0% | |
| ! | ATGCAATAAGATGGGGTGTT+GGG | - | chr3_3:19603278-19603297 | Msa0445450:intron | 40.0% |
| GATAAGGGATAAGGAGTTAG+AGG | - | chr3_3:19603318-19603337 | Msa0445450:intron | 40.0% | |
| ! | GGATGGATAGAAGGTTTGTT+TGG | + | chr3_3:19603464-19603483 | None:intergenic | 40.0% |
| GGAATTATAGTACGGATGGA+TGG | + | chr3_3:19603481-19603500 | None:intergenic | 40.0% | |
| CAACCATGTCTCTGGTTAAA+TGG | - | chr3_3:19603520-19603539 | Msa0445450:intron | 40.0% | |
| TGACCATTTAACCAGAGACA+TGG | + | chr3_3:19603526-19603545 | None:intergenic | 40.0% | |
| TTCATAAGCTTGCAAGCAAG+AGG | - | chr3_3:19603576-19603595 | Msa0445450:intron | 40.0% | |
| TCATAAGCTTGCAAGCAAGA+GGG | - | chr3_3:19603577-19603596 | Msa0445450:intron | 40.0% | |
| CTATGAGACAGTTGCTTGAA+TGG | - | chr3_3:19603751-19603770 | Msa0445450:intron | 40.0% | |
| ATGAGACAGTTGCTTGAATG+GGG | - | chr3_3:19603753-19603772 | Msa0445450:intron | 40.0% | |
| ! | AGTGGCTCCTTATTTCTTGA+AGG | - | chr3_3:19603800-19603819 | Msa0445450:intron | 40.0% |
| GAAGGAGAAGGAAGAATTGA+AGG | - | chr3_3:19603818-19603837 | Msa0445450:intron | 40.0% | |
| GAAGGAAGAATTGAAGGGTA+TGG | - | chr3_3:19603824-19603843 | Msa0445450:intron | 40.0% | |
| TAGAGTGGTGACAATGACTT+TGG | - | chr3_3:19604052-19604071 | Msa0445450:intron | 40.0% | |
| ATGGCTTGACGATACTCATA+AGG | - | chr3_3:19604214-19604233 | Msa0445450:intron | 40.0% | |
| TGTACATCTGCTCATATTCC+AGG | + | chr3_3:19604252-19604271 | None:intergenic | 40.0% | |
| AATTAAGCAAGAAAAGCGGG+AGG | + | chr3_3:19604354-19604373 | None:intergenic | 40.0% | |
| TCGTCGAAAACTAAAACCTG+TGG | + | chr3_3:19604450-19604469 | None:intergenic | 40.0% | |
| GGAATAGGATTTACGGGAAA+TGG | - | chr3_3:19604504-19604523 | Msa0445450:intron | 40.0% | |
| !!! | GGTTCCATTGACGTTTTTTC+CGG | + | chr3_3:19604643-19604662 | None:intergenic | 40.0% |
| CAGAGATCCAACTCATAACA+TGG | + | chr3_3:19604839-19604858 | None:intergenic | 40.0% | |
| ! | AAATGTGTTGACAGCATAGG+TGG | + | chr3_3:19605245-19605264 | None:intergenic | 40.0% |
| ! | GTTTACTGTTCTAGACGAGA+CGG | + | chr3_3:19605417-19605436 | None:intergenic | 40.0% |
| GGTAGAAGAATCGTCAACAT+AGG | + | chr3_3:19605494-19605513 | None:intergenic | 40.0% | |
| GACGATTCTTCTACCTTTAG+AGG | - | chr3_3:19605499-19605518 | Msa0445450:intron | 40.0% | |
| ! | CTACCTTTAGAGGAAAGTGT+TGG | - | chr3_3:19605509-19605528 | Msa0445450:intron | 40.0% |
| CCCTTTCTCTTTGTAACAGA+AGG | - | chr3_3:19605716-19605735 | Msa0445450:CDS | 40.0% | |
| TAACCTTCCTCCCTTAGAAA+AGG | - | chr3_3:19605749-19605768 | Msa0445450:CDS | 40.0% | |
| !! | CAAAGATCCTTTTCTAAGGG+AGG | + | chr3_3:19605759-19605778 | None:intergenic | 40.0% |
| CTCCCTTAGAAAAGGATCTT+TGG | - | chr3_3:19605757-19605776 | Msa0445450:CDS | 40.0% | |
| ACTCAAAGTAGAGGATAGAG+TGG | + | chr3_3:19606008-19606027 | None:intergenic | 40.0% | |
| !! | CATAACATTTGGGAAGTGTC+AGG | + | chr3_3:19606335-19606354 | None:intergenic | 40.0% |
| TGAAGCTACAAACCTCAGAA+TGG | + | chr3_3:19606362-19606381 | None:intergenic | 40.0% | |
| GGCAACTGTATGCTACATAT+TGG | + | chr3_3:19606805-19606824 | None:intergenic | 40.0% | |
| ! | AATGTTGAAGATTCTGGGGA+TGG | - | chr3_3:19606911-19606930 | Msa0445450:intron | 40.0% |
| GTGATTCTTTACTCATCCTG+TGG | - | chr3_3:19607045-19607064 | Msa0445450:intron | 40.0% | |
| GTCCGAGAGATACCTGTAAA+CGG | + | chr3_3:19602364-19602383 | None:intergenic | 45.0% | |
| TCATCACACTTGCAGGTTCT+AGG | + | chr3_3:19602436-19602455 | None:intergenic | 45.0% | |
| CTGTAGACTTCGTAAATGGC+TGG | - | chr3_3:19602485-19602504 | Msa0445450:three_prime_UTR | 45.0% | |
| GAGTGTAGAGATGTTACCTG+TGG | + | chr3_3:19602584-19602603 | None:intergenic | 45.0% | |
| CATTGCCTGCACATGTGTTT+AGG | - | chr3_3:19602672-19602691 | Msa0445450:intron | 45.0% | |
| CTATGTGGCAGTGTTATGTC+TGG | - | chr3_3:19602731-19602750 | Msa0445450:intron | 45.0% | |
| GCAAACACTATGGTCATGTC+TGG | - | chr3_3:19603116-19603135 | Msa0445450:intron | 45.0% | |
| CATGCAATAAGATGGGGTGT+TGG | - | chr3_3:19603277-19603296 | Msa0445450:intron | 45.0% | |
| TATCCCTTATCTCGTACCAG+CGG | + | chr3_3:19603309-19603328 | None:intergenic | 45.0% | |
| CTGGTACGAGATAAGGGATA+AGG | - | chr3_3:19603309-19603328 | Msa0445450:intron | 45.0% | |
| GATAAGGAGTTAGAGGTCCT+GGG | - | chr3_3:19603325-19603344 | Msa0445450:intron | 45.0% | |
| ! | CTAGGTTTGAGTTTGAACCC+AGG | + | chr3_3:19603345-19603364 | None:intergenic | 45.0% |
| CTGGGTTCAAACTCAAACCT+AGG | - | chr3_3:19603343-19603362 | Msa0445450:intron | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr3_3:19603402-19603421 | None:intergenic | 45.0% | |
| AGTACGGATGGATGGATAGA+AGG | + | chr3_3:19603473-19603492 | None:intergenic | 45.0% | |
| CTTAATTGTCAGGGCGCAAA+AGG | - | chr3_3:19604367-19604386 | Msa0445450:intron | 45.0% | |
| CGACGAATGTGTTAAGGAGT+TGG | - | chr3_3:19604464-19604483 | Msa0445450:intron | 45.0% | |
| ! | TGTGTTAAGGAGTTGGTTCC+AGG | - | chr3_3:19604471-19604490 | Msa0445450:intron | 45.0% |
| AAACTAAGCAGATGCTGAGC+CGG | - | chr3_3:19604621-19604640 | Msa0445450:CDS | 45.0% | |
| TGAGCCGGAAAAAACGTCAA+TGG | - | chr3_3:19604636-19604655 | Msa0445450:CDS | 45.0% | |
| CGTCAATGGAACCCAGAATA+TGG | - | chr3_3:19604650-19604669 | Msa0445450:intron | 45.0% | |
| TTTAAATCCTGTGCGGGACT+TGG | - | chr3_3:19605087-19605106 | Msa0445450:CDS | 45.0% | |
| TTAAATCCTGTGCGGGACTT+GGG | - | chr3_3:19605088-19605107 | Msa0445450:CDS | 45.0% | |
| GAAGAGGTGGATGACAACAT+AGG | + | chr3_3:19605193-19605212 | None:intergenic | 45.0% | |
| ATCCACCTCTTCTGTCTTCA+CGG | - | chr3_3:19605201-19605220 | Msa0445450:intron | 45.0% | |
| ! | ATAGGTGGTGCCAATGCTAA+TGG | + | chr3_3:19605230-19605249 | None:intergenic | 45.0% |
| CGAGACGGTAATGATCCTAA+TGG | + | chr3_3:19605402-19605421 | None:intergenic | 45.0% | |
| !! | AGAGAAAGGGGTATTGGGTA+AGG | + | chr3_3:19605706-19605725 | None:intergenic | 45.0% |
| !! | GATCCTTTTCTAAGGGAGGA+AGG | + | chr3_3:19605755-19605774 | None:intergenic | 45.0% |
| TCTGTTAGGAACCCAAGAGT+TGG | + | chr3_3:19605884-19605903 | None:intergenic | 45.0% | |
| AATCAAGAGAGTAGCGAGTC+TGG | - | chr3_3:19605960-19605979 | Msa0445450:intron | 45.0% | |
| GGTCTATAGTCAATCCGTAG+AGG | + | chr3_3:19606230-19606249 | None:intergenic | 45.0% | |
| GGACTGAGTAACCTATGTAG+AGG | + | chr3_3:19606436-19606455 | None:intergenic | 45.0% | |
| TGGCTGCTTCTATACTAGCA+TGG | - | chr3_3:19607065-19607084 | Msa0445450:intron | 45.0% | |
| !!! | TATATTTTTTTACAATATAT+TGG | + | chr3_3:19606251-19606270 | None:intergenic | 5.0% |
| GAGATACCTGTAAACGGCGA+CGG | + | chr3_3:19602358-19602377 | None:intergenic | 50.0% | |
| CGCCGTTTACAGGTATCTCT+CGG | - | chr3_3:19602359-19602378 | Msa0445450:three_prime_UTR | 50.0% | |
| ACTTCGTAAATGGCTGGCAG+AGG | - | chr3_3:19602491-19602510 | Msa0445450:exon | 50.0% | |
| GGATAAGGAGTTAGAGGTCC+TGG | - | chr3_3:19603324-19603343 | Msa0445450:intron | 50.0% | |
| GTTCTCTGCAACCATGTCTC+TGG | - | chr3_3:19603512-19603531 | Msa0445450:intron | 50.0% | |
| CGGGAGGAGCCAGATATTTA+GGG | + | chr3_3:19604338-19604357 | None:intergenic | 50.0% | |
| TACTCGTGATTCTCTGCCAC+AGG | - | chr3_3:19604431-19604450 | Msa0445450:intron | 50.0% | |
| ATTGCTAGAGAAGGAGCTCC+TGG | - | chr3_3:19604902-19604921 | Msa0445450:CDS | 50.0% | |
| TTCACGGTGGCCATTAGCAT+TGG | - | chr3_3:19605217-19605236 | Msa0445450:intron | 50.0% | |
| TGTCAATTGTAGCGCTGTGC+TGG | + | chr3_3:19605372-19605391 | None:intergenic | 50.0% | |
| !! | CAGGCCCCATCTACTTTTCA+TGG | + | chr3_3:19606316-19606335 | None:intergenic | 50.0% |
| CATACTGTTTGCCCGTGTGA+AGG | - | chr3_3:19606548-19606567 | Msa0445450:intron | 50.0% | |
| TGAGTCGAAGGACAAACCTG+TGG | + | chr3_3:19606617-19606636 | None:intergenic | 50.0% | |
| GCTAGTATAGAAGCAGCCAC+AGG | + | chr3_3:19607064-19607083 | None:intergenic | 50.0% | |
| TTGGAACCGTCGCCGTTTAC+AGG | - | chr3_3:19602349-19602368 | Msa0445450:three_prime_UTR | 55.0% | |
| TCGTAAATGGCTGGCAGAGG+AGG | - | chr3_3:19602494-19602513 | Msa0445450:exon | 55.0% | |
| AAATGGCTGGCAGAGGAGGA+TGG | - | chr3_3:19602498-19602517 | Msa0445450:exon | 55.0% | |
| AATGGCTGGCAGAGGAGGAT+GGG | - | chr3_3:19602499-19602518 | Msa0445450:exon | 55.0% | |
| AGCTCCGCTGGTACGAGATA+AGG | - | chr3_3:19603302-19603321 | Msa0445450:intron | 55.0% | |
| GCTCCGCTGGTACGAGATAA+GGG | - | chr3_3:19603303-19603322 | Msa0445450:intron | 55.0% | |
| GCGGGAGGAGCCAGATATTT+AGG | + | chr3_3:19604339-19604358 | None:intergenic | 55.0% | |
| GTAGGCATACGTGCTCTTCC+AGG | + | chr3_3:19604923-19604942 | None:intergenic | 55.0% | |
| CACCGTGAAGACAGAAGAGG+TGG | + | chr3_3:19605206-19605225 | None:intergenic | 55.0% | |
| CACCTCTTCTGTCTTCACGG+TGG | - | chr3_3:19605204-19605223 | Msa0445450:intron | 55.0% | |
| CAATTGTAGCGCTGTGCTGG+TGG | + | chr3_3:19605369-19605388 | None:intergenic | 55.0% | |
| AGCAACAGCTTCTCCTACGC+TGG | + | chr3_3:19605813-19605832 | None:intergenic | 55.0% | |
| GGGAGTAATGTGCGGCATCA+AGG | - | chr3_3:19606701-19606720 | Msa0445450:intron | 55.0% | |
| ATGGCTGGCAGAGGAGGATG+GGG | - | chr3_3:19602500-19602519 | Msa0445450:exon | 60.0% | |
| TCCTGTGCGGGACTTGGGAT+TGG | - | chr3_3:19605093-19605112 | Msa0445450:CDS | 60.0% | |
| TCCAATCCCAAGTCCCGCAC+AGG | + | chr3_3:19605097-19605116 | None:intergenic | 60.0% | |
| GGCCACCGTGAAGACAGAAG+AGG | + | chr3_3:19605209-19605228 | None:intergenic | 60.0% | |
| CTGGCAGAGGAGGATGGGGA+CGG | - | chr3_3:19602504-19602523 | Msa0445450:exon | 65.0% | |
| TGGCAGAGGAGGATGGGGAC+GGG | - | chr3_3:19602505-19602524 | Msa0445450:intron | 65.0% | |
| ! | TGTGCTGGTGGCAGTGGCAG+CGG | + | chr3_3:19605357-19605376 | None:intergenic | 65.0% |
| ! | TAGCGCTGTGCTGGTGGCAG+TGG | + | chr3_3:19605363-19605382 | None:intergenic | 65.0% |
| GGCAGAGGAGGATGGGGACG+GGG | - | chr3_3:19602506-19602525 | Msa0445450:intron | 70.0% | |
| GATGGGGACGGGGACGAGGA+CGG | - | chr3_3:19602516-19602535 | Msa0445450:intron | 70.0% | |
| ATGGGGACGGGGACGAGGAC+GGG | - | chr3_3:19602517-19602536 | Msa0445450:intron | 70.0% | |
| !! | GGGGTGTTGGGTAGCTCCGC+TGG | - | chr3_3:19603290-19603309 | Msa0445450:intron | 70.0% |
| GGAGGATGGGGACGGGGACG+AGG | - | chr3_3:19602512-19602531 | Msa0445450:intron | 75.0% | |
| TGGGGACGGGGACGAGGACG+GGG | - | chr3_3:19602518-19602537 | Msa0445450:intron | 75.0% | |
| CGGGGACGAGGACGGGGAAG+AGG | - | chr3_3:19602524-19602543 | Msa0445450:intron | 75.0% | |
| GCTGGTGGCAGTGGCAGCGG+TGG | + | chr3_3:19605354-19605373 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 19602333 | 19607219 | 19602333 | ID=Msa0445450;Name=Msa0445450 |
| chr3_3 | mRNA | 19602333 | 19607219 | 19602333 | ID=Msa0445450-mRNA-1;Parent=Msa0445450;Name=Msa0445450-mRNA-1;_AED=0.07;_eAED=0.07;_QI=47|0.85|1|1|0.57|0.75|8|174|166 |
| chr3_3 | exon | 19602333 | 19602523 | 19602333 | ID=Msa0445450-mRNA-1:exon:4195;Parent=Msa0445450-mRNA-1 |
| chr3_3 | exon | 19602620 | 19602668 | 19602620 | ID=Msa0445450-mRNA-1:exon:4194;Parent=Msa0445450-mRNA-1 |
| chr3_3 | exon | 19604620 | 19604666 | 19604620 | ID=Msa0445450-mRNA-1:exon:4193;Parent=Msa0445450-mRNA-1 |
| chr3_3 | exon | 19604881 | 19604934 | 19604881 | ID=Msa0445450-mRNA-1:exon:4192;Parent=Msa0445450-mRNA-1 |
| chr3_3 | exon | 19605060 | 19605173 | 19605060 | ID=Msa0445450-mRNA-1:exon:4191;Parent=Msa0445450-mRNA-1 |
| chr3_3 | exon | 19605712 | 19605844 | 19605712 | ID=Msa0445450-mRNA-1:exon:4190;Parent=Msa0445450-mRNA-1 |
| chr3_3 | exon | 19606966 | 19607061 | 19606966 | ID=Msa0445450-mRNA-1:exon:4189;Parent=Msa0445450-mRNA-1 |
| chr3_3 | exon | 19607182 | 19607219 | 19607182 | ID=Msa0445450-mRNA-1:exon:4188;Parent=Msa0445450-mRNA-1 |
| chr3_3 | five_prime_UTR | 19607182 | 19607219 | 19607182 | ID=Msa0445450-mRNA-1:five_prime_utr;Parent=Msa0445450-mRNA-1 |
| chr3_3 | five_prime_UTR | 19607053 | 19607061 | 19607053 | ID=Msa0445450-mRNA-1:five_prime_utr;Parent=Msa0445450-mRNA-1 |
| chr3_3 | CDS | 19606966 | 19607052 | 19606966 | ID=Msa0445450-mRNA-1:cds;Parent=Msa0445450-mRNA-1 |
| chr3_3 | CDS | 19605712 | 19605844 | 19605712 | ID=Msa0445450-mRNA-1:cds;Parent=Msa0445450-mRNA-1 |
| chr3_3 | CDS | 19605060 | 19605173 | 19605060 | ID=Msa0445450-mRNA-1:cds;Parent=Msa0445450-mRNA-1 |
| chr3_3 | CDS | 19604881 | 19604934 | 19604881 | ID=Msa0445450-mRNA-1:cds;Parent=Msa0445450-mRNA-1 |
| chr3_3 | CDS | 19604620 | 19604666 | 19604620 | ID=Msa0445450-mRNA-1:cds;Parent=Msa0445450-mRNA-1 |
| chr3_3 | CDS | 19602620 | 19602668 | 19602620 | ID=Msa0445450-mRNA-1:cds;Parent=Msa0445450-mRNA-1 |
| chr3_3 | CDS | 19602507 | 19602523 | 19602507 | ID=Msa0445450-mRNA-1:cds;Parent=Msa0445450-mRNA-1 |
| chr3_3 | three_prime_UTR | 19602333 | 19602506 | 19602333 | ID=Msa0445450-mRNA-1:three_prime_utr;Parent=Msa0445450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
