Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0406930 | XP_024634335.1 | 91.228 | 114 | 10 | 0 | 17 | 130 | 15 | 128 | 3.09e-69 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0406930 | A0A396IQ09 | 91.228 | 114 | 10 | 0 | 17 | 130 | 15 | 128 | 1.48e-69 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0406880 | Msa0406930 | 0.829842 | 4.105624e-55 | -8.615850e-47 |
| Msa0406930 | Msa0442850 | 0.801342 | 9.420142e-49 | -8.615850e-47 |
| Msa0406930 | Msa0445450 | 0.897788 | 1.000467e-76 | -8.615850e-47 |
| Msa0241640 | Msa0406930 | 0.803403 | 3.545238e-49 | -8.615850e-47 |
| Msa0350990 | Msa0406930 | 0.848415 | 6.219549e-60 | -8.615850e-47 |
| Msa0351030 | Msa0406930 | 0.852004 | 6.133959e-61 | -8.615850e-47 |
| Msa0351080 | Msa0406930 | 0.855008 | 8.413162e-62 | -8.615850e-47 |
| Msa0351090 | Msa0406930 | 0.811462 | 6.916771e-51 | -8.615850e-47 |
| Msa0351100 | Msa0406930 | 0.813584 | 2.377232e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0406930 | MtrunA17_Chr3g0085891 | 91.228 | 114 | 10 | 0 | 17 | 130 | 15 | 128 | 2.84e-73 | 218 |
| Msa0406930 | MtrunA17_Chr1g0160891 | 66.176 | 136 | 37 | 4 | 17 | 147 | 17 | 148 | 7.75e-53 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCAAATGTTGAAGATTC+TGG | 0.208976 | 3_2:-43927921 | Msa0406930:CDS |
| TCCTTCTCCTTCAAGAAATA+AGG | 0.229085 | 3_2:+43931019 | None:intergenic |
| TGATGTTAAACACGGGAAAA+TGG | 0.252688 | 3_2:-43931104 | Msa0406930:CDS |
| CATATGAAATCACCATATTC+TGG | 0.262324 | 3_2:+43930164 | None:intergenic |
| CGGGGACGAGGACGGGGAAG+AGG | 0.288193 | 3_2:-43932302 | Msa0406930:CDS |
| TTGGAACCGTCGCCGTTTAC+AGG | 0.294903 | 3_2:-43932477 | Msa0406930:intron |
| TAGCATGGACTATTGATTCT+TGG | 0.307571 | 3_2:-43927746 | Msa0406930:three_prime_UTR |
| CGTCAATGGAACCCAGAATA+TGG | 0.322177 | 3_2:-43930176 | Msa0406930:intron |
| TGTGTTAAGGAGTTGGTTCC+AGG | 0.329012 | 3_2:-43930355 | Msa0406930:intron |
| TCATAACGTAGCGAACTTCT+TGG | 0.339090 | 3_2:-43932504 | None:intergenic |
| TCTTCTGTAGACTTCGTAAA+TGG | 0.339559 | 3_2:-43932345 | Msa0406930:intron |
| ATGGGGACGGGGACGAGGAC+GGG | 0.362568 | 3_2:-43932309 | Msa0406930:CDS |
| GTCATCAACTACAATTCTTC+TGG | 0.366455 | 3_2:+43927649 | None:intergenic |
| GTAGGCATACGTGCTCTTCC+AGG | 0.366856 | 3_2:+43929906 | None:intergenic |
| TGGGGACGGGGACGAGGACG+GGG | 0.369102 | 3_2:-43932308 | Msa0406930:CDS |
| CTATGAGACAGTTGCTTGAA+TGG | 0.378644 | 3_2:-43931075 | Msa0406930:CDS |
| GGCAGAGGAGGATGGGGACG+GGG | 0.384213 | 3_2:-43932320 | Msa0406930:CDS |
| GGAGGATGGGGACGGGGACG+AGG | 0.384499 | 3_2:-43932314 | Msa0406930:CDS |
| TGGCAGAGGAGGATGGGGAC+GGG | 0.402946 | 3_2:-43932321 | Msa0406930:CDS |
| ATTCAAATGTTGAAGATTCT+GGG | 0.405090 | 3_2:-43927920 | Msa0406930:CDS |
| TATGAGACAGTTGCTTGAAT+GGG | 0.420424 | 3_2:-43931074 | Msa0406930:CDS |
| GTAAAGAATCACTACAGTTC+AGG | 0.435840 | 3_2:+43927792 | None:intergenic |
| CGACGAATGTGTTAAGGAGT+TGG | 0.450423 | 3_2:-43930362 | Msa0406930:CDS |
| TACTCGTGATTCTCTGCCAC+AGG | 0.453424 | 3_2:-43930395 | Msa0406930:CDS |
| GAAGGAGAAGGAAGAATTGA+AGG | 0.454002 | 3_2:-43931008 | Msa0406930:CDS |
| AATGGCTGGCAGAGGAGGAT+GGG | 0.472479 | 3_2:-43932327 | Msa0406930:CDS |
| AGTGGCTCCTTATTTCTTGA+AGG | 0.473271 | 3_2:-43931026 | Msa0406930:CDS |
| CTGGCAGAGGAGGATGGGGA+CGG | 0.475505 | 3_2:-43932322 | Msa0406930:CDS |
| TAGCGAACTTCTTGGAAAGT+TGG | 0.476575 | 3_2:-43932496 | Msa0406930:five_prime_UTR |
| CTTAATTGTCAGGGCGCAAA+AGG | 0.477030 | 3_2:-43930459 | Msa0406930:intron |
| ATATGAAATCACCATATTCT+GGG | 0.482590 | 3_2:+43930165 | None:intergenic |
| AAATGGCTGGCAGAGGAGGA+TGG | 0.482599 | 3_2:-43932328 | Msa0406930:CDS |
| ATTGCTAGAGAAGGAGCTCC+TGG | 0.499023 | 3_2:-43929924 | Msa0406930:CDS |
| GATGGGGACGGGGACGAGGA+CGG | 0.511375 | 3_2:-43932310 | Msa0406930:CDS |
| AAACTAAGCAGATGCTGAGC+CGG | 0.515920 | 3_2:-43930205 | Msa0406930:CDS |
| GAAGAATTGTAGTTGATGAC+AGG | 0.516196 | 3_2:-43927646 | Msa0406930:three_prime_UTR |
| ATGGCTGGCAGAGGAGGATG+GGG | 0.521277 | 3_2:-43932326 | Msa0406930:CDS |
| TCCTTATTTCTTGAAGGAGA+AGG | 0.526141 | 3_2:-43931020 | Msa0406930:CDS |
| CTGTAGACTTCGTAAATGGC+TGG | 0.529434 | 3_2:-43932341 | Msa0406930:intron |
| GTCCGAGAGATACCTGTAAA+CGG | 0.535958 | 3_2:+43932465 | None:intergenic |
| AATGTTGAAGATTCTGGGGA+TGG | 0.545851 | 3_2:-43927915 | Msa0406930:intron |
| TCGTAAATGGCTGGCAGAGG+AGG | 0.549677 | 3_2:-43932332 | Msa0406930:exon |
| ACTTCGTAAATGGCTGGCAG+AGG | 0.569519 | 3_2:-43932335 | Msa0406930:exon |
| TGGCTGCTTCTATACTAGCA+TGG | 0.576173 | 3_2:-43927761 | Msa0406930:three_prime_UTR |
| AAAACTTGCATTGCTAGAGA+AGG | 0.581983 | 3_2:-43929933 | Msa0406930:CDS |
| AAGGAGAAGGAAGAATTGAA+GGG | 0.585858 | 3_2:-43931007 | Msa0406930:intron |
| AAATTACAAATGGAAGTGGT+CGG | 0.588602 | 3_2:+43932270 | None:intergenic |
| GATTTACCTGATGTTAAACA+CGG | 0.592842 | 3_2:-43931112 | Msa0406930:CDS |
| GTGATTCTTTACTCATCCTG+TGG | 0.597923 | 3_2:-43927781 | Msa0406930:three_prime_UTR |
| ATGAGACAGTTGCTTGAATG+GGG | 0.600528 | 3_2:-43931073 | Msa0406930:CDS |
| ATTTACCTGATGTTAAACAC+GGG | 0.607970 | 3_2:-43931111 | Msa0406930:CDS |
| GCTAGTATAGAAGCAGCCAC+AGG | 0.632363 | 3_2:+43927765 | None:intergenic |
| TCAAGCAGCAAGTTTAACAA+AGG | 0.635144 | 3_2:+43927672 | None:intergenic |
| GAGATACCTGTAAACGGCGA+CGG | 0.655045 | 3_2:+43932471 | None:intergenic |
| TTCAAATGTTGAAGATTCTG+GGG | 0.659761 | 3_2:-43927919 | Msa0406930:CDS |
| TCGTCGAAAACTAAAACCTG+TGG | 0.697134 | 3_2:+43930379 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAATTAAAAAAACA+AGG | + | chr3_2:43928090-43928109 | None:intergenic | 10.0% |
| !! | AACAATAAATTTACAATCAA+AGG | + | chr3_2:43927685-43927704 | None:intergenic | 15.0% |
| !!! | AATTAAGTTGTTTATTGAAA+CGG | + | chr3_2:43927902-43927921 | None:intergenic | 15.0% |
| !!! | TTTTGATAGATATTTTAAAG+TGG | - | chr3_2:43929078-43929097 | Msa0406930:intron | 15.0% |
| !! | CTTTAAACAATAATATATCA+TGG | + | chr3_2:43929482-43929501 | None:intergenic | 15.0% |
| !!! | CAAATAATTTAGAACTAAAT+TGG | - | chr3_2:43929882-43929901 | Msa0406930:intron | 15.0% |
| !! | TTGTTAACGTTAAAAAATAA+GGG | + | chr3_2:43930250-43930269 | None:intergenic | 15.0% |
| !! | TTTGTTAACGTTAAAAAATA+AGG | + | chr3_2:43930251-43930270 | None:intergenic | 15.0% |
| !!! | TTTTTTAACGTTAACAAAAT+AGG | - | chr3_2:43930253-43930272 | Msa0406930:intron | 15.0% |
| !!! | TTTTTAACGTTAACAAAATA+GGG | - | chr3_2:43930254-43930273 | Msa0406930:intron | 15.0% |
| !! | AAAAGAAATCATATTAAACT+TGG | - | chr3_2:43931867-43931886 | Msa0406930:intron | 15.0% |
| !! | GAAAATGAAAAAAAAAATCT+TGG | + | chr3_2:43932122-43932141 | None:intergenic | 15.0% |
| !!! | TTTTTCATTTTCGTATTAAA+AGG | - | chr3_2:43932130-43932149 | Msa0406930:intron | 15.0% |
| !! | TTGATTTATTTATGCTTATC+TGG | + | chr3_2:43928736-43928755 | None:intergenic | 20.0% |
| !! | AAATGTAAGGAATTATAGTA+CGG | + | chr3_2:43928785-43928804 | None:intergenic | 20.0% |
| !! | GAAATATAGAAATAGTTATG+AGG | + | chr3_2:43928855-43928874 | None:intergenic | 20.0% |
| !! | ACAGAAAATAGATAATTACA+CGG | + | chr3_2:43928951-43928970 | None:intergenic | 20.0% |
| !! | TCACAATATATATCATGTAA+AGG | + | chr3_2:43929155-43929174 | None:intergenic | 20.0% |
| !!! | ATTGTTTAAAGTATCTAACA+TGG | - | chr3_2:43929491-43929510 | Msa0406930:intron | 20.0% |
| !!! | GAATATTTTCAATGCTTATA+TGG | - | chr3_2:43929596-43929615 | Msa0406930:intron | 20.0% |
| !!! | CACATTTTTAATGTTATAAC+AGG | - | chr3_2:43930554-43930573 | Msa0406930:intron | 20.0% |
| !!! | ATTTTTAATGTTATAACAGG+AGG | - | chr3_2:43930557-43930576 | Msa0406930:intron | 20.0% |
| !! | TGTTCGAATTATAGAATAAA+GGG | - | chr3_2:43930822-43930841 | Msa0406930:intron | 20.0% |
| !! | TTGTTAGTTAGATTTCTATT+TGG | - | chr3_2:43930929-43930948 | Msa0406930:intron | 20.0% |
| !! | TGTTAGTTAGATTTCTATTT+GGG | - | chr3_2:43930930-43930949 | Msa0406930:intron | 20.0% |
| !!! | TTCAATTTGAAAATTTTGTG+AGG | + | chr3_2:43931383-43931402 | None:intergenic | 20.0% |
| !!! | GTTTTTTTAACATTTAGAGA+CGG | + | chr3_2:43931504-43931523 | None:intergenic | 20.0% |
| !! | AAATGTTAAAAAAACCTCTA+CGG | - | chr3_2:43931509-43931528 | Msa0406930:intron | 20.0% |
| !! | TATACAGTTTGTAATGATAT+TGG | + | chr3_2:43931753-43931772 | None:intergenic | 20.0% |
| !! | ATGTAAGTTGTTTGTAAATT+TGG | - | chr3_2:43931958-43931977 | Msa0406930:intron | 20.0% |
| !!! | TTTGGATTTTAGAAATGTAT+AGG | - | chr3_2:43931976-43931995 | Msa0406930:intron | 20.0% |
| !!! | TTGGATTTTAGAAATGTATA+GGG | - | chr3_2:43931977-43931996 | Msa0406930:intron | 20.0% |
| !!! | CTGCAAAATTTTAATTTAGT+TGG | + | chr3_2:43932160-43932179 | None:intergenic | 20.0% |
| ! | AAATATTTCTCGTATCTATG+TGG | - | chr3_2:43928012-43928031 | Msa0406930:intron | 25.0% |
| !! | AAAACAAGGTCTTATAATCT+AGG | + | chr3_2:43928076-43928095 | None:intergenic | 25.0% |
| ! | GGACTTATTGAAAACAAATT+AGG | - | chr3_2:43928192-43928211 | Msa0406930:intron | 25.0% |
| ! | GTTTCTTTCATAAACTATGA+TGG | - | chr3_2:43928516-43928535 | Msa0406930:intron | 25.0% |
| ! | TTATAGACATGCAATAAGAT+GGG | - | chr3_2:43928566-43928585 | Msa0406930:intron | 25.0% |
| ! | ACATGATATATATTGTGAGA+TGG | - | chr3_2:43929157-43929176 | Msa0406930:intron | 25.0% |
| ! | TGATAAAGAAAACCACAATT+TGG | - | chr3_2:43929209-43929228 | Msa0406930:intron | 25.0% |
| !! | GTCCTCTAAAAATTTGAATA+TGG | - | chr3_2:43929231-43929250 | Msa0406930:intron | 25.0% |
| !!! | AGCCATATTCAAATTTTTAG+AGG | + | chr3_2:43929236-43929255 | None:intergenic | 25.0% |
| !!! | GGTCAAATTTTAATCTTTGA+GGG | + | chr3_2:43929299-43929318 | None:intergenic | 25.0% |
| !!! | TGGTCAAATTTTAATCTTTG+AGG | + | chr3_2:43929300-43929319 | None:intergenic | 25.0% |
| !! | GTGATACTTTTGTATATTGA+AGG | - | chr3_2:43929380-43929399 | Msa0406930:intron | 25.0% |
| !! | ATGTCTTTGGAAGATTATTA+CGG | - | chr3_2:43929416-43929435 | Msa0406930:intron | 25.0% |
| !! | ATGTGGTTTTCAAATGATTA+GGG | + | chr3_2:43929447-43929466 | None:intergenic | 25.0% |
| !! | AATGTGGTTTTCAAATGATT+AGG | + | chr3_2:43929448-43929467 | None:intergenic | 25.0% |
| ! | ATCATTTGAAAACCACATTT+AGG | - | chr3_2:43929449-43929468 | Msa0406930:intron | 25.0% |
| !! | GAATAATGGAATAGGATTTA+CGG | - | chr3_2:43929793-43929812 | Msa0406930:intron | 25.0% |
| !! | AATAATGGAATAGGATTTAC+GGG | - | chr3_2:43929794-43929813 | Msa0406930:intron | 25.0% |
| !! | TACTTTTCTTTATGCATTTG+AGG | - | chr3_2:43929849-43929868 | Msa0406930:intron | 25.0% |
| !! | AGAACTAAATTGGTAATTTC+AGG | - | chr3_2:43929892-43929911 | Msa0406930:intron | 25.0% |
| ! | ATATGAAATCACCATATTCT+GGG | + | chr3_2:43929960-43929979 | None:intergenic | 25.0% |
| ! | TTGATCATTCTATGTACATA+TGG | - | chr3_2:43930095-43930114 | Msa0406930:intron | 25.0% |
| ! | ATATTATCCATGTTATGAGT+TGG | - | chr3_2:43930125-43930144 | Msa0406930:intron | 25.0% |
| ! | TTAAGGAATCAAAAAATGAC+TGG | + | chr3_2:43930289-43930308 | None:intergenic | 25.0% |
| ! | TAATATTGTGTTACGAGATA+TGG | - | chr3_2:43930332-43930351 | Msa0406930:intron | 25.0% |
| ! | AATTGACAAAACTATCCATT+AGG | - | chr3_2:43930680-43930699 | Msa0406930:intron | 25.0% |
| ! | GTGTTCGAATTATAGAATAA+AGG | - | chr3_2:43930821-43930840 | Msa0406930:intron | 25.0% |
| !! | TCTGTTGTATTTTCTGTTAT+TGG | - | chr3_2:43930961-43930980 | Msa0406930:intron | 25.0% |
| ! | GCATATATCTTAGTTGTAAT+TGG | - | chr3_2:43931075-43931094 | Msa0406930:CDS | 25.0% |
| ! | GAAAGAGAGTAAACATAAAA+AGG | - | chr3_2:43931198-43931217 | Msa0406930:intron | 25.0% |
| ! | AAAATTAACACTCAAAGTAG+AGG | + | chr3_2:43931313-43931332 | None:intergenic | 25.0% |
| !!! | CTGTTTTGAGATAAAATTAG+TGG | - | chr3_2:43931459-43931478 | Msa0406930:intron | 25.0% |
| ! | ATAGTAAGCTTCATCAATTA+TGG | - | chr3_2:43931564-43931583 | Msa0406930:intron | 25.0% |
| ! | GAATGGTAAACATAACATTT+GGG | + | chr3_2:43931641-43931660 | None:intergenic | 25.0% |
| ! | AGAATGGTAAACATAACATT+TGG | + | chr3_2:43931642-43931661 | None:intergenic | 25.0% |
| ! | AGTATGTGTAATATTTGTAG+GGG | + | chr3_2:43931830-43931849 | None:intergenic | 25.0% |
| ! | CAGTATGTGTAATATTTGTA+GGG | + | chr3_2:43931831-43931850 | None:intergenic | 25.0% |
| ! | ACAGTATGTGTAATATTTGT+AGG | + | chr3_2:43931832-43931851 | None:intergenic | 25.0% |
| ! | ATTCAAATGTTGAAGATTCT+GGG | - | chr3_2:43932202-43932221 | Msa0406930:intron | 25.0% |
| AAATTACAAATGGAAGTGGT+CGG | + | chr3_2:43927855-43927874 | None:intergenic | 30.0% | |
| GGAAAAATTACAAATGGAAG+TGG | + | chr3_2:43927859-43927878 | None:intergenic | 30.0% | |
| ! | TCCATTTGTAATTTTTCCAC+AGG | - | chr3_2:43927861-43927880 | Msa0406930:intron | 30.0% |
| ACCTGTGGAAAAATTACAAA+TGG | + | chr3_2:43927865-43927884 | None:intergenic | 30.0% | |
| ! | GATTTTAAATTCTGCTAACG+AGG | - | chr3_2:43928125-43928144 | Msa0406930:intron | 30.0% |
| GAATATTTGTGATAGAGAGA+AGG | - | chr3_2:43928168-43928187 | Msa0406930:intron | 30.0% | |
| AATCTATCACATAGAGCTTA+TGG | - | chr3_2:43928278-43928297 | Msa0406930:intron | 30.0% | |
| CTTATAGACATGCAATAAGA+TGG | - | chr3_2:43928565-43928584 | Msa0406930:intron | 30.0% | |
| TATAGACATGCAATAAGATG+GGG | - | chr3_2:43928567-43928586 | Msa0406930:intron | 30.0% | |
| !!! | CTTCTTTGTTTTTTTGTCCT+AGG | + | chr3_2:43928659-43928678 | None:intergenic | 30.0% |
| !! | ATAACACTTTGAGACTGTTT+GGG | + | chr3_2:43928709-43928728 | None:intergenic | 30.0% |
| GATTTACCTGATGTTAAACA+CGG | - | chr3_2:43929010-43929029 | Msa0406930:intron | 30.0% | |
| ATTTACCTGATGTTAAACAC+GGG | - | chr3_2:43929011-43929030 | Msa0406930:intron | 30.0% | |
| !! | ATTTTTAGAGGACCAAATTG+TGG | + | chr3_2:43929224-43929243 | None:intergenic | 30.0% |
| ! | TTGGTGATAAATTCTCAACA+TGG | + | chr3_2:43929320-43929339 | None:intergenic | 30.0% |
| TCACCAAATTAGAATTAGAG+TGG | - | chr3_2:43929333-43929352 | Msa0406930:intron | 30.0% | |
| TCACCACTCTAATTCTAATT+TGG | + | chr3_2:43929339-43929358 | None:intergenic | 30.0% | |
| !! | GTATATTGAAGGCATTGATT+TGG | - | chr3_2:43929391-43929410 | Msa0406930:intron | 30.0% |
| CATGGAATAAATCCTAAATG+TGG | + | chr3_2:43929464-43929483 | None:intergenic | 30.0% | |
| ATAAGGAATGAAATACTTCC+TGG | - | chr3_2:43929527-43929546 | Msa0406930:intron | 30.0% | |
| CAGATATTTAGGGACAAATA+TGG | + | chr3_2:43929624-43929643 | None:intergenic | 30.0% | |
| CATATTTGTCCCTAAATATC+TGG | - | chr3_2:43929622-43929641 | Msa0406930:intron | 30.0% | |
| TGACAATTAAGCAAGAAAAG+CGG | + | chr3_2:43929654-43929673 | None:intergenic | 30.0% | |
| ! | CTTTTCTTGCTTAATTGTCA+GGG | - | chr3_2:43929654-43929673 | Msa0406930:intron | 30.0% |
| !!! | GGAAATGGTTATGTTTTTTG+TGG | - | chr3_2:43929815-43929834 | Msa0406930:intron | 30.0% |
| CATATGAAATCACCATATTC+TGG | + | chr3_2:43929961-43929980 | None:intergenic | 30.0% | |
| GTTATTCAAATTGAAAGAGC+AGG | - | chr3_2:43930033-43930052 | Msa0406930:intron | 30.0% | |
| ATGATCAATACTCAGTAGAA+TGG | + | chr3_2:43930083-43930102 | None:intergenic | 30.0% | |
| ATTCTATGTACATATGGTCA+TGG | - | chr3_2:43930101-43930120 | Msa0406930:intron | 30.0% | |
| TTCTATGTACATATGGTCAT+GGG | - | chr3_2:43930102-43930121 | Msa0406930:intron | 30.0% | |
| TAATAAGATGTTTGTGTTGC+AGG | - | chr3_2:43930160-43930179 | Msa0406930:intron | 30.0% | |
| AAAATAAGGGAAAGAATCGT+AGG | + | chr3_2:43930237-43930256 | None:intergenic | 30.0% | |
| AACTCACACTTAATCAGTTA+AGG | + | chr3_2:43930306-43930325 | None:intergenic | 30.0% | |
| TCTCGTAACACAATATTACT+CGG | + | chr3_2:43930330-43930349 | None:intergenic | 30.0% | |
| ! | GAATTCTTTTAAATCCTGTG+CGG | - | chr3_2:43930376-43930395 | Msa0406930:CDS | 30.0% |
| ! | AATTCTTTTAAATCCTGTGC+GGG | - | chr3_2:43930377-43930396 | Msa0406930:CDS | 30.0% |
| ! | TAAAAATGTGTTGACAGCAT+AGG | + | chr3_2:43930544-43930563 | None:intergenic | 30.0% |
| CAGTAATAAGTGATAACAGT+GGG | + | chr3_2:43930608-43930627 | None:intergenic | 30.0% | |
| TCAGTAATAAGTGATAACAG+TGG | + | chr3_2:43930609-43930628 | None:intergenic | 30.0% | |
| ! | TTTGTTACCTACATTTTGTC+AGG | - | chr3_2:43930758-43930777 | Msa0406930:intron | 30.0% |
| !! | TTTCTTTGAAATCCAACTCT+TGG | - | chr3_2:43931165-43931184 | Msa0406930:intron | 30.0% |
| !! | TTCTTTGAAATCCAACTCTT+GGG | - | chr3_2:43931166-43931185 | Msa0406930:intron | 30.0% |
| ATGTTTACTCTCTTTCTGTT+AGG | + | chr3_2:43931194-43931213 | None:intergenic | 30.0% | |
| AGAGAGTAAACATAAAAAGG+AGG | - | chr3_2:43931201-43931220 | Msa0406930:intron | 30.0% | |
| TGGAACTGATGATTATGATA+AGG | - | chr3_2:43931276-43931295 | Msa0406930:intron | 30.0% | |
| ! | TCTTTTCACAAGTTCAAGAA+TGG | + | chr3_2:43931337-43931356 | None:intergenic | 30.0% |
| ATAGTACCATGAAAAGTAGA+TGG | - | chr3_2:43931603-43931622 | Msa0406930:intron | 30.0% | |
| TAGTACCATGAAAAGTAGAT+GGG | - | chr3_2:43931604-43931623 | Msa0406930:intron | 30.0% | |
| ATGTTATGTTTACCATTCTG+AGG | - | chr3_2:43931643-43931662 | Msa0406930:intron | 30.0% | |
| ! | AGAGGAATTGTCTTTTATGA+TGG | + | chr3_2:43931714-43931733 | None:intergenic | 30.0% |
| AAAAGACAATTCCTCTACAT+AGG | - | chr3_2:43931718-43931737 | Msa0406930:intron | 30.0% | |
| AGTTGAGTATATACGAAACT+TGG | - | chr3_2:43931797-43931816 | Msa0406930:intron | 30.0% | |
| ! | ATGATTTCTTTTCCTTCACA+CGG | + | chr3_2:43931859-43931878 | None:intergenic | 30.0% |
| CTTACATTGAATGCTGAAAT+AGG | + | chr3_2:43931945-43931964 | None:intergenic | 30.0% | |
| CACACTCAAAACAAAAAAGA+GGG | + | chr3_2:43932062-43932081 | None:intergenic | 30.0% | |
| GATTCAAATGTTGAAGATTC+TGG | - | chr3_2:43932201-43932220 | Msa0406930:intron | 30.0% | |
| TTCAAATGTTGAAGATTCTG+GGG | - | chr3_2:43932203-43932222 | Msa0406930:intron | 30.0% | |
| TCTTCTGTAGACTTCGTAAA+TGG | - | chr3_2:43927777-43927796 | Msa0406930:three_prime_UTR | 35.0% | |
| ! | ACGCTTTCAATCAAAAGTGT+CGG | + | chr3_2:43927938-43927957 | None:intergenic | 35.0% |
| TATTTGTGATAGAGAGAAGG+TGG | - | chr3_2:43928171-43928190 | Msa0406930:intron | 35.0% | |
| !! | CATAACACTTTGAGACTGTT+TGG | + | chr3_2:43928710-43928729 | None:intergenic | 35.0% |
| GTAAGGAATTATAGTACGGA+TGG | + | chr3_2:43928781-43928800 | None:intergenic | 35.0% | |
| TGCAGAGAACAGAAAATGTA+AGG | + | chr3_2:43928798-43928817 | None:intergenic | 35.0% | |
| CTTTATCAATCTGATGCTAC+AGG | - | chr3_2:43928982-43929001 | Msa0406930:intron | 35.0% | |
| ! | ATTTTCCCGTGTTTAACATC+AGG | + | chr3_2:43929019-43929038 | None:intergenic | 35.0% |
| TGATGTTAAACACGGGAAAA+TGG | - | chr3_2:43929018-43929037 | Msa0406930:intron | 35.0% | |
| TATGAGACAGTTGCTTGAAT+GGG | - | chr3_2:43929048-43929067 | Msa0406930:intron | 35.0% | |
| ! | TCCTTATTTCTTGAAGGAGA+AGG | - | chr3_2:43929102-43929121 | Msa0406930:intron | 35.0% |
| TCCTTCTCCTTCAAGAAATA+AGG | + | chr3_2:43929106-43929125 | None:intergenic | 35.0% | |
| AAGGAGAAGGAAGAATTGAA+GGG | - | chr3_2:43929115-43929134 | Msa0406930:intron | 35.0% | |
| ! | GTGTGATGACAAGTTTTTGT+GGG | + | chr3_2:43929272-43929291 | None:intergenic | 35.0% |
| ! | AGTGTGATGACAAGTTTTTG+TGG | + | chr3_2:43929273-43929292 | None:intergenic | 35.0% |
| !! | CATTGATTTGGTGATGTCTT+TGG | - | chr3_2:43929403-43929422 | Msa0406930:intron | 35.0% |
| GACAATTAAGCAAGAAAAGC+GGG | + | chr3_2:43929653-43929672 | None:intergenic | 35.0% | |
| ! | GCTTTTCTTGCTTAATTGTC+AGG | - | chr3_2:43929653-43929672 | Msa0406930:intron | 35.0% |
| CAGAGAATCACGAGTAAAAA+TGG | + | chr3_2:43929723-43929742 | None:intergenic | 35.0% | |
| ! | AGTTTTCGACGAATGTGTTA+AGG | - | chr3_2:43929754-43929773 | Msa0406930:intron | 35.0% |
| TTGGTTCCAGGTATGAATAA+TGG | - | chr3_2:43929779-43929798 | Msa0406930:intron | 35.0% | |
| CCTATTCCATTATTCATACC+TGG | + | chr3_2:43929788-43929807 | None:intergenic | 35.0% | |
| ! | CCAGGTATGAATAATGGAAT+AGG | - | chr3_2:43929785-43929804 | Msa0406930:intron | 35.0% |
| ! | CTTTATGCATTTGAGGTTTC+TGG | - | chr3_2:43929856-43929875 | Msa0406930:intron | 35.0% |
| ! | TGAAAGAGCAGGATCTATTT+TGG | - | chr3_2:43930044-43930063 | Msa0406930:intron | 35.0% |
| TCAATACTCAGTAGAATGGA+AGG | + | chr3_2:43930079-43930098 | None:intergenic | 35.0% | |
| AAAACTTGCATTGCTAGAGA+AGG | - | chr3_2:43930189-43930208 | Msa0406930:CDS | 35.0% | |
| TGTGTTACGAGATATGGATA+TGG | - | chr3_2:43930338-43930357 | Msa0406930:intron | 35.0% | |
| TAATCTGACCAACACATGTA+TGG | - | chr3_2:43930421-43930440 | Msa0406930:CDS | 35.0% | |
| GTAATACACCATACATGTGT+TGG | + | chr3_2:43930432-43930451 | None:intergenic | 35.0% | |
| ! | GTTGTCGAAGTGTTAAACTA+AGG | + | chr3_2:43930467-43930486 | None:intergenic | 35.0% |
| AAGACAGTAATAAACGGAAC+AGG | + | chr3_2:43930585-43930604 | None:intergenic | 35.0% | |
| AGTGGGAAGACAGTAATAAA+CGG | + | chr3_2:43930591-43930610 | None:intergenic | 35.0% | |
| ! | GTCTAGAACAGTAAACTTCA+CGG | - | chr3_2:43930717-43930736 | Msa0406930:intron | 35.0% |
| GATTTCACCTGACAAAATGT+AGG | + | chr3_2:43930768-43930787 | None:intergenic | 35.0% | |
| ATTCGAACACTTTCCTCTAA+AGG | + | chr3_2:43930811-43930830 | None:intergenic | 35.0% | |
| ! | CTGTTATTGGCTAGTTGTTA+TGG | - | chr3_2:43930974-43930993 | Msa0406930:intron | 35.0% |
| !! | TACAAAGAGAAAGGGGTATT+GGG | + | chr3_2:43931007-43931026 | None:intergenic | 35.0% |
| ! | TTACAAAGAGAAAGGGGTAT+TGG | + | chr3_2:43931008-43931027 | None:intergenic | 35.0% |
| CTTCTGTTACAAAGAGAAAG+GGG | + | chr3_2:43931014-43931033 | None:intergenic | 35.0% | |
| CCTTCTGTTACAAAGAGAAA+GGG | + | chr3_2:43931015-43931034 | None:intergenic | 35.0% | |
| ACCTTCTGTTACAAAGAGAA+AGG | + | chr3_2:43931016-43931035 | None:intergenic | 35.0% | |
| ! | TGCCAAAGATCCTTTTCTAA+GGG | + | chr3_2:43931058-43931077 | None:intergenic | 35.0% |
| ! | ATGCCAAAGATCCTTTTCTA+AGG | + | chr3_2:43931059-43931078 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTATAACCAGCGT+AGG | - | chr3_2:43931093-43931112 | Msa0406930:CDS | 35.0% |
| TGAAGAAAGTGAAGATGAAG+AGG | - | chr3_2:43931231-43931250 | Msa0406930:intron | 35.0% | |
| TGAAGAAGCAAAACCACATT+TGG | - | chr3_2:43931435-43931454 | Msa0406930:intron | 35.0% | |
| ATCTCAAAACAGACCAAATG+TGG | + | chr3_2:43931451-43931470 | None:intergenic | 35.0% | |
| AGTACCATGAAAAGTAGATG+GGG | - | chr3_2:43931605-43931624 | Msa0406930:intron | 35.0% | |
| ! | TGATTTCTTTTCCTTCACAC+GGG | + | chr3_2:43931858-43931877 | None:intergenic | 35.0% |
| TGTTAATACTTATGCACCAC+AGG | - | chr3_2:43931894-43931913 | Msa0406930:intron | 35.0% | |
| !!! | AGGTTTTTTACATGAGTCGA+AGG | + | chr3_2:43931925-43931944 | None:intergenic | 35.0% |
| AATGTATAGGGAGTAATGTG+CGG | - | chr3_2:43931989-43932008 | Msa0406930:intron | 35.0% | |
| CCACACTCAAAACAAAAAAG+AGG | + | chr3_2:43932063-43932082 | None:intergenic | 35.0% | |
| !!! | CCTCTTTTTTGTTTTGAGTG+TGG | - | chr3_2:43932060-43932079 | Msa0406930:intron | 35.0% |
| !!! | CTTTTTTGTTTTGAGTGTGG+TGG | - | chr3_2:43932063-43932082 | Msa0406930:intron | 35.0% |
| CTATCAACTTCGTAATTCTC+TGG | - | chr3_2:43932272-43932291 | Msa0406930:CDS | 35.0% | |
| GTAAAGAATCACTACAGTTC+AGG | + | chr3_2:43932333-43932352 | None:intergenic | 35.0% | |
| !! | TAGCATGGACTATTGATTCT+TGG | - | chr3_2:43932376-43932395 | Msa0406930:intron | 35.0% |
| TCAAGCAGCAAGTTTAACAA+AGG | + | chr3_2:43932453-43932472 | None:intergenic | 35.0% | |
| GTCATCAACTACAATTCTTC+TGG | + | chr3_2:43932476-43932495 | None:intergenic | 35.0% | |
| !! | GAAGAATTGTAGTTGATGAC+AGG | - | chr3_2:43932476-43932495 | Msa0406930:intron | 35.0% |
| TCTGTTATCATCACACTTGC+AGG | + | chr3_2:43927739-43927758 | None:intergenic | 40.0% | |
| TTGAACCTAAACACATGTGC+AGG | + | chr3_2:43927976-43927995 | None:intergenic | 40.0% | |
| GTTAGTCCAAGCAAACACTA+TGG | - | chr3_2:43928402-43928421 | Msa0406930:intron | 40.0% | |
| ACATGACCATAGTGTTTGCT+TGG | + | chr3_2:43928411-43928430 | None:intergenic | 40.0% | |
| ! | ATGCAATAAGATGGGGTGTT+GGG | - | chr3_2:43928574-43928593 | Msa0406930:intron | 40.0% |
| GATAAGGGATAAGGAGTTAG+AGG | - | chr3_2:43928614-43928633 | Msa0406930:intron | 40.0% | |
| ! | GGATGGATAGAAGGTTTGTT+TGG | + | chr3_2:43928760-43928779 | None:intergenic | 40.0% |
| GGAATTATAGTACGGATGGA+TGG | + | chr3_2:43928777-43928796 | None:intergenic | 40.0% | |
| CAACCATGTCTCTGGTTAAA+TGG | - | chr3_2:43928816-43928835 | Msa0406930:intron | 40.0% | |
| TGACCATTTAACCAGAGACA+TGG | + | chr3_2:43928822-43928841 | None:intergenic | 40.0% | |
| TTCATAAGCTTGCAAGCAAG+AGG | - | chr3_2:43928872-43928891 | Msa0406930:intron | 40.0% | |
| TCATAAGCTTGCAAGCAAGA+GGG | - | chr3_2:43928873-43928892 | Msa0406930:intron | 40.0% | |
| CTATGAGACAGTTGCTTGAA+TGG | - | chr3_2:43929047-43929066 | Msa0406930:intron | 40.0% | |
| ATGAGACAGTTGCTTGAATG+GGG | - | chr3_2:43929049-43929068 | Msa0406930:intron | 40.0% | |
| ! | AGTGGCTCCTTATTTCTTGA+AGG | - | chr3_2:43929096-43929115 | Msa0406930:intron | 40.0% |
| GAAGGAGAAGGAAGAATTGA+AGG | - | chr3_2:43929114-43929133 | Msa0406930:intron | 40.0% | |
| GAAGGAAGAATTGAAGGGTA+TGG | - | chr3_2:43929120-43929139 | Msa0406930:intron | 40.0% | |
| TAGAGTGGTGACAATGACTT+TGG | - | chr3_2:43929348-43929367 | Msa0406930:intron | 40.0% | |
| ATGGCTTGACGATACTCATA+AGG | - | chr3_2:43929510-43929529 | Msa0406930:intron | 40.0% | |
| TGTACATCTGCTCATATTCC+AGG | + | chr3_2:43929548-43929567 | None:intergenic | 40.0% | |
| AATTAAGCAAGAAAAGCGGG+AGG | + | chr3_2:43929650-43929669 | None:intergenic | 40.0% | |
| TCGTCGAAAACTAAAACCTG+TGG | + | chr3_2:43929746-43929765 | None:intergenic | 40.0% | |
| GGAATAGGATTTACGGGAAA+TGG | - | chr3_2:43929800-43929819 | Msa0406930:intron | 40.0% | |
| !!! | GGTTCCATTGACGTTTTTTC+CGG | + | chr3_2:43929939-43929958 | None:intergenic | 40.0% |
| CAGAGATCCAACTCATAACA+TGG | + | chr3_2:43930135-43930154 | None:intergenic | 40.0% | |
| ! | AAATGTGTTGACAGCATAGG+TGG | + | chr3_2:43930541-43930560 | None:intergenic | 40.0% |
| ! | GTTTACTGTTCTAGACGAGA+CGG | + | chr3_2:43930713-43930732 | None:intergenic | 40.0% |
| GGTAGAAGAATCGTCAACAT+AGG | + | chr3_2:43930790-43930809 | None:intergenic | 40.0% | |
| GACGATTCTTCTACCTTTAG+AGG | - | chr3_2:43930795-43930814 | Msa0406930:intron | 40.0% | |
| CCCTTTCTCTTTGTAACAGA+AGG | - | chr3_2:43931012-43931031 | Msa0406930:CDS | 40.0% | |
| TAACCTTCCTCCCTTAGAAA+AGG | - | chr3_2:43931045-43931064 | Msa0406930:CDS | 40.0% | |
| !! | CAAAGATCCTTTTCTAAGGG+AGG | + | chr3_2:43931055-43931074 | None:intergenic | 40.0% |
| CTCCCTTAGAAAAGGATCTT+TGG | - | chr3_2:43931053-43931072 | Msa0406930:CDS | 40.0% | |
| ACTCAAAGTAGAGGATAGAG+TGG | + | chr3_2:43931304-43931323 | None:intergenic | 40.0% | |
| !! | CATAACATTTGGGAAGTGTC+AGG | + | chr3_2:43931631-43931650 | None:intergenic | 40.0% |
| TGAAGCTACAAACCTCAGAA+TGG | + | chr3_2:43931658-43931677 | None:intergenic | 40.0% | |
| GGCAACTGTATGCTACATAT+TGG | + | chr3_2:43932101-43932120 | None:intergenic | 40.0% | |
| ! | AATGTTGAAGATTCTGGGGA+TGG | - | chr3_2:43932207-43932226 | Msa0406930:intron | 40.0% |
| GTGATTCTTTACTCATCCTG+TGG | - | chr3_2:43932341-43932360 | Msa0406930:intron | 40.0% | |
| GTCCGAGAGATACCTGTAAA+CGG | + | chr3_2:43927660-43927679 | None:intergenic | 45.0% | |
| TCATCACACTTGCAGGTTCT+AGG | + | chr3_2:43927732-43927751 | None:intergenic | 45.0% | |
| CTGTAGACTTCGTAAATGGC+TGG | - | chr3_2:43927781-43927800 | Msa0406930:three_prime_UTR | 45.0% | |
| GAGTGTAGAGATGTTACCTG+TGG | + | chr3_2:43927880-43927899 | None:intergenic | 45.0% | |
| CATTGCCTGCACATGTGTTT+AGG | - | chr3_2:43927968-43927987 | Msa0406930:intron | 45.0% | |
| CTATGTGGCAGTGTTATGTC+TGG | - | chr3_2:43928027-43928046 | Msa0406930:intron | 45.0% | |
| GCAAACACTATGGTCATGTC+TGG | - | chr3_2:43928412-43928431 | Msa0406930:intron | 45.0% | |
| CATGCAATAAGATGGGGTGT+TGG | - | chr3_2:43928573-43928592 | Msa0406930:intron | 45.0% | |
| TATCCCTTATCTCGTACCAG+CGG | + | chr3_2:43928605-43928624 | None:intergenic | 45.0% | |
| CTGGTACGAGATAAGGGATA+AGG | - | chr3_2:43928605-43928624 | Msa0406930:intron | 45.0% | |
| GATAAGGAGTTAGAGGTCCT+GGG | - | chr3_2:43928621-43928640 | Msa0406930:intron | 45.0% | |
| ! | CTAGGTTTGAGTTTGAACCC+AGG | + | chr3_2:43928641-43928660 | None:intergenic | 45.0% |
| CTGGGTTCAAACTCAAACCT+AGG | - | chr3_2:43928639-43928658 | Msa0406930:intron | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr3_2:43928698-43928717 | None:intergenic | 45.0% | |
| AGTACGGATGGATGGATAGA+AGG | + | chr3_2:43928769-43928788 | None:intergenic | 45.0% | |
| CTTAATTGTCAGGGCGCAAA+AGG | - | chr3_2:43929663-43929682 | Msa0406930:intron | 45.0% | |
| CGACGAATGTGTTAAGGAGT+TGG | - | chr3_2:43929760-43929779 | Msa0406930:intron | 45.0% | |
| ! | TGTGTTAAGGAGTTGGTTCC+AGG | - | chr3_2:43929767-43929786 | Msa0406930:intron | 45.0% |
| AAACTAAGCAGATGCTGAGC+CGG | - | chr3_2:43929917-43929936 | Msa0406930:CDS | 45.0% | |
| TGAGCCGGAAAAAACGTCAA+TGG | - | chr3_2:43929932-43929951 | Msa0406930:CDS | 45.0% | |
| CGTCAATGGAACCCAGAATA+TGG | - | chr3_2:43929946-43929965 | Msa0406930:intron | 45.0% | |
| TTTAAATCCTGTGCGGGACT+TGG | - | chr3_2:43930383-43930402 | Msa0406930:CDS | 45.0% | |
| TTAAATCCTGTGCGGGACTT+GGG | - | chr3_2:43930384-43930403 | Msa0406930:CDS | 45.0% | |
| GAAGAGGTGGATGACAACAT+AGG | + | chr3_2:43930489-43930508 | None:intergenic | 45.0% | |
| ATCCACCTCTTCTGTCTTCA+CGG | - | chr3_2:43930497-43930516 | Msa0406930:intron | 45.0% | |
| ! | ATAGGTGGTGCCAATGCTAA+TGG | + | chr3_2:43930526-43930545 | None:intergenic | 45.0% |
| CGAGACGGTAATGATCCTAA+TGG | + | chr3_2:43930698-43930717 | None:intergenic | 45.0% | |
| !! | AGAGAAAGGGGTATTGGGTA+AGG | + | chr3_2:43931002-43931021 | None:intergenic | 45.0% |
| !! | GATCCTTTTCTAAGGGAGGA+AGG | + | chr3_2:43931051-43931070 | None:intergenic | 45.0% |
| TCTGTTAGGAACCCAAGAGT+TGG | + | chr3_2:43931180-43931199 | None:intergenic | 45.0% | |
| AATCAAGAGAGTAGCGAGTC+TGG | - | chr3_2:43931256-43931275 | Msa0406930:intron | 45.0% | |
| GGTCTATAGTCAATCCGTAG+AGG | + | chr3_2:43931526-43931545 | None:intergenic | 45.0% | |
| GGACTGAGTAACCTATGTAG+AGG | + | chr3_2:43931732-43931751 | None:intergenic | 45.0% | |
| TGGCTGCTTCTATACTAGCA+TGG | - | chr3_2:43932361-43932380 | Msa0406930:intron | 45.0% | |
| !!! | TATATTTTTTTACAATATAT+TGG | + | chr3_2:43931547-43931566 | None:intergenic | 5.0% |
| GAGATACCTGTAAACGGCGA+CGG | + | chr3_2:43927654-43927673 | None:intergenic | 50.0% | |
| CGCCGTTTACAGGTATCTCT+CGG | - | chr3_2:43927655-43927674 | Msa0406930:three_prime_UTR | 50.0% | |
| ACTTCGTAAATGGCTGGCAG+AGG | - | chr3_2:43927787-43927806 | Msa0406930:exon | 50.0% | |
| GGATAAGGAGTTAGAGGTCC+TGG | - | chr3_2:43928620-43928639 | Msa0406930:intron | 50.0% | |
| GTTCTCTGCAACCATGTCTC+TGG | - | chr3_2:43928808-43928827 | Msa0406930:intron | 50.0% | |
| CGGGAGGAGCCAGATATTTA+GGG | + | chr3_2:43929634-43929653 | None:intergenic | 50.0% | |
| TACTCGTGATTCTCTGCCAC+AGG | - | chr3_2:43929727-43929746 | Msa0406930:intron | 50.0% | |
| ATTGCTAGAGAAGGAGCTCC+TGG | - | chr3_2:43930198-43930217 | Msa0406930:CDS | 50.0% | |
| TTCACGGTGGCCATTAGCAT+TGG | - | chr3_2:43930513-43930532 | Msa0406930:intron | 50.0% | |
| TGTCAATTGTAGCGCTGTGC+TGG | + | chr3_2:43930668-43930687 | None:intergenic | 50.0% | |
| !! | CAGGCCCCATCTACTTTTCA+TGG | + | chr3_2:43931612-43931631 | None:intergenic | 50.0% |
| CATACTGTTTGCCCGTGTGA+AGG | - | chr3_2:43931844-43931863 | Msa0406930:intron | 50.0% | |
| TGAGTCGAAGGACAAACCTG+TGG | + | chr3_2:43931913-43931932 | None:intergenic | 50.0% | |
| GCTAGTATAGAAGCAGCCAC+AGG | + | chr3_2:43932360-43932379 | None:intergenic | 50.0% | |
| TTGGAACCGTCGCCGTTTAC+AGG | - | chr3_2:43927645-43927664 | Msa0406930:three_prime_UTR | 55.0% | |
| TCGTAAATGGCTGGCAGAGG+AGG | - | chr3_2:43927790-43927809 | Msa0406930:exon | 55.0% | |
| AAATGGCTGGCAGAGGAGGA+TGG | - | chr3_2:43927794-43927813 | Msa0406930:exon | 55.0% | |
| AATGGCTGGCAGAGGAGGAT+GGG | - | chr3_2:43927795-43927814 | Msa0406930:exon | 55.0% | |
| AGCTCCGCTGGTACGAGATA+AGG | - | chr3_2:43928598-43928617 | Msa0406930:intron | 55.0% | |
| GCTCCGCTGGTACGAGATAA+GGG | - | chr3_2:43928599-43928618 | Msa0406930:intron | 55.0% | |
| GCGGGAGGAGCCAGATATTT+AGG | + | chr3_2:43929635-43929654 | None:intergenic | 55.0% | |
| GTAGGCATACGTGCTCTTCC+AGG | + | chr3_2:43930219-43930238 | None:intergenic | 55.0% | |
| CACCGTGAAGACAGAAGAGG+TGG | + | chr3_2:43930502-43930521 | None:intergenic | 55.0% | |
| CACCTCTTCTGTCTTCACGG+TGG | - | chr3_2:43930500-43930519 | Msa0406930:intron | 55.0% | |
| CAATTGTAGCGCTGTGCTGG+TGG | + | chr3_2:43930665-43930684 | None:intergenic | 55.0% | |
| AGCAACAGCTTCTCCTACGC+TGG | + | chr3_2:43931109-43931128 | None:intergenic | 55.0% | |
| GGGAGTAATGTGCGGCATCA+AGG | - | chr3_2:43931997-43932016 | Msa0406930:intron | 55.0% | |
| ATGGCTGGCAGAGGAGGATG+GGG | - | chr3_2:43927796-43927815 | Msa0406930:exon | 60.0% | |
| TCCTGTGCGGGACTTGGGAT+TGG | - | chr3_2:43930389-43930408 | Msa0406930:CDS | 60.0% | |
| TCCAATCCCAAGTCCCGCAC+AGG | + | chr3_2:43930393-43930412 | None:intergenic | 60.0% | |
| GGCCACCGTGAAGACAGAAG+AGG | + | chr3_2:43930505-43930524 | None:intergenic | 60.0% | |
| CTGGCAGAGGAGGATGGGGA+CGG | - | chr3_2:43927800-43927819 | Msa0406930:exon | 65.0% | |
| TGGCAGAGGAGGATGGGGAC+GGG | - | chr3_2:43927801-43927820 | Msa0406930:intron | 65.0% | |
| ! | TGTGCTGGTGGCAGTGGCAG+CGG | + | chr3_2:43930653-43930672 | None:intergenic | 65.0% |
| ! | TAGCGCTGTGCTGGTGGCAG+TGG | + | chr3_2:43930659-43930678 | None:intergenic | 65.0% |
| GGCAGAGGAGGATGGGGACG+GGG | - | chr3_2:43927802-43927821 | Msa0406930:intron | 70.0% | |
| GATGGGGACGGGGACGAGGA+CGG | - | chr3_2:43927812-43927831 | Msa0406930:intron | 70.0% | |
| ATGGGGACGGGGACGAGGAC+GGG | - | chr3_2:43927813-43927832 | Msa0406930:intron | 70.0% | |
| !! | GGGGTGTTGGGTAGCTCCGC+TGG | - | chr3_2:43928586-43928605 | Msa0406930:intron | 70.0% |
| GGAGGATGGGGACGGGGACG+AGG | - | chr3_2:43927808-43927827 | Msa0406930:intron | 75.0% | |
| TGGGGACGGGGACGAGGACG+GGG | - | chr3_2:43927814-43927833 | Msa0406930:intron | 75.0% | |
| CGGGGACGAGGACGGGGAAG+AGG | - | chr3_2:43927820-43927839 | Msa0406930:intron | 75.0% | |
| GCTGGTGGCAGTGGCAGCGG+TGG | + | chr3_2:43930650-43930669 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 43927629 | 43932515 | 43927629 | ID=Msa0406930;Name=Msa0406930 |
| chr3_2 | mRNA | 43927629 | 43932515 | 43927629 | ID=Msa0406930-mRNA-1;Parent=Msa0406930;Name=Msa0406930-mRNA-1;_AED=0.07;_eAED=0.07;_QI=47|0.85|1|1|0.57|0.75|8|174|166 |
| chr3_2 | exon | 43927629 | 43927819 | 43927629 | ID=Msa0406930-mRNA-1:exon:8507;Parent=Msa0406930-mRNA-1 |
| chr3_2 | exon | 43927916 | 43927964 | 43927916 | ID=Msa0406930-mRNA-1:exon:8506;Parent=Msa0406930-mRNA-1 |
| chr3_2 | exon | 43929916 | 43929962 | 43929916 | ID=Msa0406930-mRNA-1:exon:8505;Parent=Msa0406930-mRNA-1 |
| chr3_2 | exon | 43930177 | 43930230 | 43930177 | ID=Msa0406930-mRNA-1:exon:8504;Parent=Msa0406930-mRNA-1 |
| chr3_2 | exon | 43930356 | 43930469 | 43930356 | ID=Msa0406930-mRNA-1:exon:8503;Parent=Msa0406930-mRNA-1 |
| chr3_2 | exon | 43931008 | 43931140 | 43931008 | ID=Msa0406930-mRNA-1:exon:8502;Parent=Msa0406930-mRNA-1 |
| chr3_2 | exon | 43932262 | 43932357 | 43932262 | ID=Msa0406930-mRNA-1:exon:8501;Parent=Msa0406930-mRNA-1 |
| chr3_2 | exon | 43932478 | 43932515 | 43932478 | ID=Msa0406930-mRNA-1:exon:8500;Parent=Msa0406930-mRNA-1 |
| chr3_2 | five_prime_UTR | 43932478 | 43932515 | 43932478 | ID=Msa0406930-mRNA-1:five_prime_utr;Parent=Msa0406930-mRNA-1 |
| chr3_2 | five_prime_UTR | 43932349 | 43932357 | 43932349 | ID=Msa0406930-mRNA-1:five_prime_utr;Parent=Msa0406930-mRNA-1 |
| chr3_2 | CDS | 43932262 | 43932348 | 43932262 | ID=Msa0406930-mRNA-1:cds;Parent=Msa0406930-mRNA-1 |
| chr3_2 | CDS | 43931008 | 43931140 | 43931008 | ID=Msa0406930-mRNA-1:cds;Parent=Msa0406930-mRNA-1 |
| chr3_2 | CDS | 43930356 | 43930469 | 43930356 | ID=Msa0406930-mRNA-1:cds;Parent=Msa0406930-mRNA-1 |
| chr3_2 | CDS | 43930177 | 43930230 | 43930177 | ID=Msa0406930-mRNA-1:cds;Parent=Msa0406930-mRNA-1 |
| chr3_2 | CDS | 43929916 | 43929962 | 43929916 | ID=Msa0406930-mRNA-1:cds;Parent=Msa0406930-mRNA-1 |
| chr3_2 | CDS | 43927916 | 43927964 | 43927916 | ID=Msa0406930-mRNA-1:cds;Parent=Msa0406930-mRNA-1 |
| chr3_2 | CDS | 43927803 | 43927819 | 43927803 | ID=Msa0406930-mRNA-1:cds;Parent=Msa0406930-mRNA-1 |
| chr3_2 | three_prime_UTR | 43927629 | 43927802 | 43927629 | ID=Msa0406930-mRNA-1:three_prime_utr;Parent=Msa0406930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
