Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446160 | TYI33728.1 | 54.448 | 281 | 62 | 9 | 2 | 224 | 8 | 280 | 8.50e-44 | 159 |
| Msa0446160 | TYI33728.1 | 63.200 | 125 | 24 | 7 | 75 | 196 | 2 | 107 | 9.45e-12 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446160 | A0A5D2R0C3 | 54.448 | 281 | 62 | 9 | 2 | 224 | 8 | 280 | 4.06e-44 | 159 |
| Msa0446160 | A0A5D2R0C3 | 63.200 | 125 | 24 | 7 | 75 | 196 | 2 | 107 | 4.51e-12 | 74.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0446160 | Msa0446170 | 0.808424 | 3.117830e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGTACCTTTGGTATTTC+TGG | 0.077856 | 3_3:-21509238 | Msa0446160:CDS |
| TCAGGTATCTTTGAAATTTC+TGG | 0.104685 | 3_3:-21509001 | Msa0446160:CDS |
| AGCTCAGGTTTGGGCAATTC+AGG | 0.197717 | 3_3:-21508953 | Msa0446160:CDS |
| AATTCTGGCTTAGGTAATTT+AGG | 0.214638 | 3_3:-21508779 | Msa0446160:CDS |
| TCAGGTACCTTAGGCAATTC+TGG | 0.231204 | 3_3:-21508794 | Msa0446160:intron |
| TTAGGAGTTTCAGGGAATTT+AGG | 0.242346 | 3_3:-21509352 | None:intergenic |
| AACTCTAGCTTTGGTAATTC+AGG | 0.247874 | 3_3:-21509256 | Msa0446160:CDS |
| AATTCAGGGGCAATAAATTT+AGG | 0.255231 | 3_3:-21509043 | Msa0446160:CDS |
| GACTTTAGGTAGCTCAGGTT+TGG | 0.265600 | 3_3:-21508963 | Msa0446160:CDS |
| AGTTCAGGCTTTGTCAATTC+AGG | 0.281138 | 3_3:-21509289 | Msa0446160:CDS |
| ACTTTAGGTTGCTCGGGTTT+TGG | 0.285159 | 3_3:-21509067 | Msa0446160:CDS |
| TCAGGTACCTTAGGGATATC+TGG | 0.288152 | 3_3:-21509139 | Msa0446160:CDS |
| TTTGGCAATTCAGGTACTTT+AGG | 0.288403 | 3_3:-21509082 | Msa0446160:intron |
| TTAGGTAATTTAGGAATCTT+AGG | 0.292668 | 3_3:-21508770 | Msa0446160:CDS |
| ATAGACAATTCGGGGACTTT+AGG | 0.311738 | 3_3:-21508977 | Msa0446160:CDS |
| AATTTAGGTAACTCAGGTTT+TGG | 0.311779 | 3_3:-21509028 | Msa0446160:CDS |
| AGTATAGCTAGAATCATTAA+TGG | 0.316206 | 3_3:-21508641 | Msa0446160:CDS |
| AGCTCAGACTTTGGAAGTTC+AGG | 0.317949 | 3_3:-21508845 | Msa0446160:intron |
| TTTGTCAATTCAGGTATCTT+AGG | 0.317967 | 3_3:-21509280 | Msa0446160:CDS |
| TACCTTTGGTATTTCTGGCT+TGG | 0.319635 | 3_3:-21509233 | Msa0446160:CDS |
| AATTTAGGTAACTCGGGTTT+TGG | 0.322053 | 3_3:-21509337 | Msa0446160:CDS |
| ACCTTTGGTATTTCTGGCTT+GGG | 0.325986 | 3_3:-21509232 | Msa0446160:CDS |
| TTAGGCAACTCGGGAACTTT+AGG | 0.329308 | 3_3:-21508926 | Msa0446160:CDS |
| TACCTTAGGGATATCTGGTT+TGG | 0.332667 | 3_3:-21509134 | Msa0446160:CDS |
| TTTGGTAATTCAGGTACCTT+AGG | 0.339853 | 3_3:-21509148 | Msa0446160:CDS |
| AACTTAGGTAGCTCAGACTT+TGG | 0.349422 | 3_3:-21508854 | Msa0446160:CDS |
| ATAGGTGGAAAATCAAGTTT+TGG | 0.353325 | 3_3:-21508731 | Msa0446160:CDS |
| ACCTTAGGTAGCTCGGGTTT+TGG | 0.355137 | 3_3:-21509166 | Msa0446160:CDS |
| ACTTTGGGAAACTCGGGTTT+TGG | 0.357337 | 3_3:-21508893 | Msa0446160:CDS |
| TTAGGCAACTCAGGAACTTT+GGG | 0.358876 | 3_3:-21508908 | Msa0446160:CDS |
| ACTTTAGGTAGCTCAGGTTT+GGG | 0.365399 | 3_3:-21508962 | Msa0446160:CDS |
| AATTTCTGGCATAGACAATT+CGG | 0.365865 | 3_3:-21508987 | Msa0446160:CDS |
| TTGGGCAACTCAGAGACTTT+TGG | 0.369313 | 3_3:-21509214 | Msa0446160:CDS |
| ACATTAACTTTAGGTAGTTC+AGG | 0.370017 | 3_3:-21509304 | Msa0446160:CDS |
| GGAAGCTCAGGCTTTGGTAT+AGG | 0.376080 | 3_3:-21508749 | Msa0446160:CDS |
| TTCAGGTACTTTAGGTTGCT+CGG | 0.381939 | 3_3:-21509074 | Msa0446160:intron |
| AGTTCAGGGACATTAACTTT+AGG | 0.387475 | 3_3:-21509313 | Msa0446160:CDS |
| CTCAGGAACTTTGGGAAACT+CGG | 0.389158 | 3_3:-21508900 | Msa0446160:CDS |
| TTTAGGCAACTCAGGAACTT+TGG | 0.393082 | 3_3:-21508909 | Msa0446160:CDS |
| ATCTTAGGAAGCTCAGGCTT+TGG | 0.394512 | 3_3:-21508755 | Msa0446160:CDS |
| ATTTCTGGCATAGACAATTC+GGG | 0.397522 | 3_3:-21508986 | Msa0446160:CDS |
| TTTGGTAATTCAGGTACCTT+TGG | 0.399783 | 3_3:-21509247 | Msa0446160:CDS |
| TTAGGAATCTTAGGAAGCTC+AGG | 0.422568 | 3_3:-21508761 | Msa0446160:CDS |
| ACCTTAGGGATATCTGGTTT+GGG | 0.423518 | 3_3:-21509133 | Msa0446160:CDS |
| ATCTTAGGTAACTCTAGCTT+TGG | 0.432161 | 3_3:-21509265 | Msa0446160:CDS |
| AGAGTATTACAATGGTTGTC+GGG | 0.433887 | 3_3:+21508672 | Msa0446170:CDS |
| TTTGGCAATTCAGGTACCTT+AGG | 0.442441 | 3_3:-21508803 | Msa0446160:intron |
| TTTGGTAATTCAGGTACCTT+AGG | 0.444525 | 3_3:-21509181 | Msa0446160:CDS |
| TTCAGGTACCTTAGGTAGCT+CGG | 0.444849 | 3_3:-21509173 | Msa0446160:CDS |
| ACCTTAGGCAATTCTGGCTT+AGG | 0.463421 | 3_3:-21508788 | Msa0446160:CDS |
| TCGGGGACTTTAGGTAGCTC+AGG | 0.467048 | 3_3:-21508968 | Msa0446160:CDS |
| TTGGGCAATTCAGGGAACTT+AGG | 0.475381 | 3_3:-21508944 | Msa0446160:CDS |
| TTCAGGGAATTTAGGTAACT+CGG | 0.478958 | 3_3:-21509344 | None:intergenic |
| TTGGGCAATTCAGAGACCTT+AGG | 0.479741 | 3_3:-21509115 | Msa0446160:intron |
| AATTCAGGAACATTAAACTT+AGG | 0.490699 | 3_3:-21508869 | Msa0446160:CDS |
| GCAATAAATTTAGGTAACTC+AGG | 0.493164 | 3_3:-21509034 | Msa0446160:CDS |
| TTGGTAATTCAGGTACCTTA+GGG | 0.494321 | 3_3:-21509147 | Msa0446160:CDS |
| TTCAGGGAACTTAGGCAACT+CGG | 0.499436 | 3_3:-21508936 | Msa0446160:CDS |
| TCAGGTACCTTAGGTAGCTC+GGG | 0.499460 | 3_3:-21509172 | Msa0446160:CDS |
| TCAGGTACTTTAGGTTGCTC+GGG | 0.499954 | 3_3:-21509073 | Msa0446160:intron |
| AAGAGTATTACAATGGTTGT+CGG | 0.514321 | 3_3:+21508671 | Msa0446170:CDS |
| GCTCAGGTTTGGGCAATTCA+GGG | 0.523757 | 3_3:-21508952 | Msa0446160:CDS |
| TCAGGAACTTTGGGAAACTC+GGG | 0.528389 | 3_3:-21508899 | Msa0446160:CDS |
| AGCTCAGGCTTTGGTATAGG+TGG | 0.530445 | 3_3:-21508746 | Msa0446160:CDS |
| TCAGGGAATTTAGGTAACTC+GGG | 0.549724 | 3_3:-21509343 | None:intergenic |
| TCGGGAACTTTAGGCAACTC+AGG | 0.569614 | 3_3:-21508917 | Msa0446160:CDS |
| ACCAAAACCCGAGCTACCTA+AGG | 0.574183 | 3_3:+21509165 | Msa0446170:CDS |
| TCAGGGAACTTAGGCAACTC+GGG | 0.582113 | 3_3:-21508935 | Msa0446160:CDS |
| TTTCTGGCATAGACAATTCG+GGG | 0.596116 | 3_3:-21508985 | Msa0446160:CDS |
| ACCTAAGCCAGAATTGCCTA+AGG | 0.603337 | 3_3:+21508787 | Msa0446170:CDS |
| GCCCAAACCAGATATCCCTA+AGG | 0.632454 | 3_3:+21509132 | Msa0446170:CDS |
| GAGTATTACAATGGTTGTCG+GGG | 0.633099 | 3_3:+21508673 | Msa0446170:CDS |
| GTCAGCAAAGAGTATTACAA+TGG | 0.649491 | 3_3:+21508664 | Msa0446170:CDS |
| GCCCAAGCCAGAAATACCAA+AGG | 0.675655 | 3_3:+21509231 | Msa0446170:CDS |
| TCTAGAGTCGAACATACCTG+AGG | 0.701502 | 3_3:+21508706 | Msa0446170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATTCAGGAACATTAAACTT+AGG | - | chr3_3:21509087-21509106 | Msa0446160:intron | 25.0% |
| ! | TTAGGTAATTTAGGAATCTT+AGG | - | chr3_3:21509186-21509205 | Msa0446160:CDS | 25.0% |
| ! | AGTATAGCTAGAATCATTAA+TGG | - | chr3_3:21509315-21509334 | Msa0446160:CDS | 25.0% |
| ACATTAACTTTAGGTAGTTC+AGG | - | chr3_3:21508652-21508671 | Msa0446160:CDS | 30.0% | |
| TTTGTCAATTCAGGTATCTT+AGG | - | chr3_3:21508676-21508695 | Msa0446160:CDS | 30.0% | |
| AATTCAGGGGCAATAAATTT+AGG | - | chr3_3:21508913-21508932 | Msa0446160:CDS | 30.0% | |
| GCAATAAATTTAGGTAACTC+AGG | - | chr3_3:21508922-21508941 | Msa0446160:CDS | 30.0% | |
| ! | AATTTAGGTAACTCAGGTTT+TGG | - | chr3_3:21508928-21508947 | Msa0446160:CDS | 30.0% |
| !! | TCAGGTATCTTTGAAATTTC+TGG | - | chr3_3:21508955-21508974 | Msa0446160:CDS | 30.0% |
| !! | AATTTCTGGCATAGACAATT+CGG | - | chr3_3:21508969-21508988 | Msa0446160:CDS | 30.0% |
| !! | AATTCTGGCTTAGGTAATTT+AGG | - | chr3_3:21509177-21509196 | Msa0446160:CDS | 30.0% |
| ! | ATAGGTGGAAAATCAAGTTT+TGG | - | chr3_3:21509225-21509244 | Msa0446160:CDS | 30.0% |
| !! | AAGAGTATTACAATGGTTGT+CGG | + | chr3_3:21509288-21509307 | Msa0446170:CDS | 30.0% |
| ! | AATTTAGGTAACTCGGGTTT+TGG | - | chr3_3:21508619-21508638 | Msa0446160:CDS | 35.0% |
| AGTTCAGGGACATTAACTTT+AGG | - | chr3_3:21508643-21508662 | Msa0446160:CDS | 35.0% | |
| ! | ATCTTAGGTAACTCTAGCTT+TGG | - | chr3_3:21508691-21508710 | Msa0446160:CDS | 35.0% |
| !! | AACTCTAGCTTTGGTAATTC+AGG | - | chr3_3:21508700-21508719 | Msa0446160:CDS | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+TGG | - | chr3_3:21508709-21508728 | Msa0446160:CDS | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+AGG | - | chr3_3:21508709-21508728 | Msa0446160:CDS | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+AGG | - | chr3_3:21508709-21508728 | Msa0446160:CDS | 35.0% |
| ! | TTGGTAATTCAGGTACCTTA+GGG | - | chr3_3:21508776-21508795 | Msa0446160:CDS | 35.0% |
| ! | ACCTTAGGTAGTTCATGTTT+TGG | - | chr3_3:21508856-21508875 | Msa0446160:CDS | 35.0% |
| !!! | AGTTCATGTTTTGGCAATTC+AGG | - | chr3_3:21508865-21508884 | Msa0446160:CDS | 35.0% |
| TTTGGCAATTCAGGTACTTT+AGG | - | chr3_3:21508874-21508893 | Msa0446160:CDS | 35.0% | |
| !! | ATTTCTGGCATAGACAATTC+GGG | - | chr3_3:21508970-21508989 | Msa0446160:CDS | 35.0% |
| !!! | AAATCAAGTTTTGGAACCTC+AGG | - | chr3_3:21509234-21509253 | Msa0446160:CDS | 35.0% |
| ! | AGAGTATTACAATGGTTGTC+GGG | + | chr3_3:21509287-21509306 | Msa0446170:CDS | 35.0% |
| !! | GTCAGCAAAGAGTATTACAA+TGG | + | chr3_3:21509295-21509314 | Msa0446170:CDS | 35.0% |
| ! | AGTTCAGGCTTTGTCAATTC+AGG | - | chr3_3:21508667-21508686 | Msa0446160:CDS | 40.0% |
| TCAGGTACCTTTGGTATTTC+TGG | - | chr3_3:21508718-21508737 | Msa0446160:CDS | 40.0% | |
| !! | TACCTTTGGTATTTCTGGCT+TGG | - | chr3_3:21508723-21508742 | Msa0446160:CDS | 40.0% |
| !! | ACCTTTGGTATTTCTGGCTT+GGG | - | chr3_3:21508724-21508743 | Msa0446160:CDS | 40.0% |
| TACCTTAGGGATATCTGGTT+TGG | - | chr3_3:21508822-21508841 | Msa0446160:intron | 40.0% | |
| ! | ACCTTAGGGATATCTGGTTT+GGG | - | chr3_3:21508823-21508842 | Msa0446160:intron | 40.0% |
| GCCAAAACATGAACTACCTA+AGG | + | chr3_3:21508860-21508879 | Msa0446170:CDS | 40.0% | |
| !! | TTCAGGTACTTTAGGTTGCT+CGG | - | chr3_3:21508882-21508901 | Msa0446160:CDS | 40.0% |
| !! | AACTCAGGTTTTGGCAATTC+AGG | - | chr3_3:21508937-21508956 | Msa0446160:CDS | 40.0% |
| ! | TTTCTGGCATAGACAATTCG+GGG | - | chr3_3:21508971-21508990 | Msa0446160:CDS | 40.0% |
| ATAGACAATTCGGGGACTTT+AGG | - | chr3_3:21508979-21508998 | Msa0446160:CDS | 40.0% | |
| ACTTTAGGTAGCTCAGGTTT+GGG | - | chr3_3:21508994-21509013 | Msa0446160:CDS | 40.0% | |
| TTTAGGCAACTCAGGAACTT+TGG | - | chr3_3:21509047-21509066 | Msa0446160:CDS | 40.0% | |
| TTAGGCAACTCAGGAACTTT+GGG | - | chr3_3:21509048-21509067 | Msa0446160:CDS | 40.0% | |
| AACTTAGGTAGCTCAGACTT+TGG | - | chr3_3:21509102-21509121 | Msa0446160:intron | 40.0% | |
| TTTGGAAGTTCAGGTACCTT+AGG | - | chr3_3:21509120-21509139 | Msa0446160:CDS | 40.0% | |
| TCAGGTACCTTAGGTAATTC+TGG | - | chr3_3:21509129-21509148 | Msa0446160:CDS | 40.0% | |
| !! | ACCTTAGGTAATTCTGGCTT+TGG | - | chr3_3:21509135-21509154 | Msa0446160:CDS | 40.0% |
| !! | AATTCTGGCTTTGGCAATTC+AGG | - | chr3_3:21509144-21509163 | Msa0446160:CDS | 40.0% |
| TTTGGCAATTCAGGTACCTT+AGG | - | chr3_3:21509153-21509172 | Msa0446160:CDS | 40.0% | |
| TTAGGAATCTTAGGAAGCTC+AGG | - | chr3_3:21509195-21509214 | Msa0446160:CDS | 40.0% | |
| GAGTATTACAATGGTTGTCG+GGG | + | chr3_3:21509286-21509305 | Msa0446170:CDS | 40.0% | |
| ! | TTGGGCAACTCAGAGACTTT+TGG | - | chr3_3:21508742-21508761 | Msa0446160:CDS | 45.0% |
| !! | CTCAGAGACTTTTGGTAGCT+CGG | - | chr3_3:21508750-21508769 | Msa0446160:CDS | 45.0% |
| !! | TCAGAGACTTTTGGTAGCTC+GGG | - | chr3_3:21508751-21508770 | Msa0446160:CDS | 45.0% |
| !! | ACTTTTGGTAGCTCGGGTTT+TGG | - | chr3_3:21508757-21508776 | Msa0446160:CDS | 45.0% |
| !! | AGCTCGGGTTTTGGTAATTC+AGG | - | chr3_3:21508766-21508785 | Msa0446160:CDS | 45.0% |
| TTCAGGTACCTTAGGTAGCT+CGG | - | chr3_3:21508783-21508802 | Msa0446160:CDS | 45.0% | |
| !! | AGCTCGGGTTTTGGTAATTC+AGG | - | chr3_3:21508766-21508785 | Msa0446160:CDS | 45.0% |
| TCAGGTACCTTAGGGATATC+TGG | - | chr3_3:21508817-21508836 | Msa0446160:intron | 45.0% | |
| TTGGGCAATTCAGAGACCTT+AGG | - | chr3_3:21508841-21508860 | Msa0446160:intron | 45.0% | |
| !! | TCAGGTACTTTAGGTTGCTC+GGG | - | chr3_3:21508883-21508902 | Msa0446160:CDS | 45.0% |
| !!! | ACTTTAGGTTGCTCGGGTTT+TGG | - | chr3_3:21508889-21508908 | Msa0446160:CDS | 45.0% |
| GACTTTAGGTAGCTCAGGTT+TGG | - | chr3_3:21508993-21509012 | Msa0446160:CDS | 45.0% | |
| TTGGGCAATTCAGGGAACTT+AGG | - | chr3_3:21509012-21509031 | Msa0446160:CDS | 45.0% | |
| TTCAGGGAACTTAGGCAACT+CGG | - | chr3_3:21509020-21509039 | Msa0446160:CDS | 45.0% | |
| TTAGGCAACTCGGGAACTTT+AGG | - | chr3_3:21509030-21509049 | Msa0446160:CDS | 45.0% | |
| ! | CTCAGGAACTTTGGGAAACT+CGG | - | chr3_3:21509056-21509075 | Msa0446160:CDS | 45.0% |
| ! | TCAGGAACTTTGGGAAACTC+GGG | - | chr3_3:21509057-21509076 | Msa0446160:CDS | 45.0% |
| !! | ACTTTGGGAAACTCGGGTTT+TGG | - | chr3_3:21509063-21509082 | Msa0446160:CDS | 45.0% |
| !! | AACTCGGGTTTTGGCAATTC+AGG | - | chr3_3:21509072-21509091 | Msa0446160:CDS | 45.0% |
| ! | AGCTCAGACTTTGGAAGTTC+AGG | - | chr3_3:21509111-21509130 | Msa0446160:intron | 45.0% |
| GCCAAAGCCAGAATTACCTA+AGG | + | chr3_3:21509139-21509158 | Msa0446170:CDS | 45.0% | |
| TCAGGTACCTTAGGCAATTC+TGG | - | chr3_3:21509162-21509181 | Msa0446160:CDS | 45.0% | |
| !! | ACCTTAGGCAATTCTGGCTT+AGG | - | chr3_3:21509168-21509187 | Msa0446160:CDS | 45.0% |
| ACCTAAGCCAGAATTGCCTA+AGG | + | chr3_3:21509172-21509191 | Msa0446170:CDS | 45.0% | |
| ATCTTAGGAAGCTCAGGCTT+TGG | - | chr3_3:21509201-21509220 | Msa0446160:CDS | 45.0% | |
| ! | TCTAGAGTCGAACATACCTG+AGG | + | chr3_3:21509253-21509272 | Msa0446170:CDS | 45.0% |
| !! | AACTCGGGTTTTGGCAGTTC+AGG | - | chr3_3:21508628-21508647 | Msa0446160:CDS | 50.0% |
| !! | ACTCGGGTTTTGGCAGTTCA+GGG | - | chr3_3:21508629-21508648 | Msa0446160:CDS | 50.0% |
| GCCCAAGCCAGAAATACCAA+AGG | + | chr3_3:21508728-21508747 | Msa0446170:CDS | 50.0% | |
| TCAGGTACCTTAGGTAGCTC+GGG | - | chr3_3:21508784-21508803 | Msa0446160:CDS | 50.0% | |
| ! | ACCTTAGGTAGCTCGGGTTT+TGG | - | chr3_3:21508790-21508809 | Msa0446160:CDS | 50.0% |
| ACCAAAACCCGAGCTACCTA+AGG | + | chr3_3:21508794-21508813 | Msa0446170:CDS | 50.0% | |
| GCCCAAACCAGATATCCCTA+AGG | + | chr3_3:21508827-21508846 | Msa0446170:CDS | 50.0% | |
| !! | TGCTCGGGTTTTGGCAATTC+AGG | - | chr3_3:21508898-21508917 | Msa0446160:CDS | 50.0% |
| !! | GCTCGGGTTTTGGCAATTCA+GGG | - | chr3_3:21508899-21508918 | Msa0446160:CDS | 50.0% |
| !! | CTCGGGTTTTGGCAATTCAG+GGG | - | chr3_3:21508900-21508919 | Msa0446160:CDS | 50.0% |
| AGCTCAGGTTTGGGCAATTC+AGG | - | chr3_3:21509003-21509022 | Msa0446160:CDS | 50.0% | |
| GCTCAGGTTTGGGCAATTCA+GGG | - | chr3_3:21509004-21509023 | Msa0446160:CDS | 50.0% | |
| TCAGGGAACTTAGGCAACTC+GGG | - | chr3_3:21509021-21509040 | Msa0446160:CDS | 50.0% | |
| TCGGGAACTTTAGGCAACTC+AGG | - | chr3_3:21509039-21509058 | Msa0446160:CDS | 50.0% | |
| ! | GGAAGCTCAGGCTTTGGTAT+AGG | - | chr3_3:21509207-21509226 | Msa0446160:CDS | 50.0% |
| ! | AGCTCAGGCTTTGGTATAGG+TGG | - | chr3_3:21509210-21509229 | Msa0446160:CDS | 50.0% |
| TCGGGGACTTTAGGTAGCTC+AGG | - | chr3_3:21508988-21509007 | Msa0446160:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 21508619 | 21509359 | 21508619 | ID=Msa0446160;Name=Msa0446160 |
| chr3_3 | mRNA | 21508619 | 21509359 | 21508619 | ID=Msa0446160-mRNA-1;Parent=Msa0446160;Name=Msa0446160-mRNA-1;_AED=0.16;_eAED=0.45;_QI=0|0.5|0|1|0|0|3|0|228 |
| chr3_3 | exon | 21509116 | 21509359 | 21509116 | ID=Msa0446160-mRNA-1:exon:4510;Parent=Msa0446160-mRNA-1 |
| chr3_3 | exon | 21508846 | 21509091 | 21508846 | ID=Msa0446160-mRNA-1:exon:4509;Parent=Msa0446160-mRNA-1 |
| chr3_3 | exon | 21508619 | 21508812 | 21508619 | ID=Msa0446160-mRNA-1:exon:4508;Parent=Msa0446160-mRNA-1 |
| chr3_3 | CDS | 21509116 | 21509359 | 21509116 | ID=Msa0446160-mRNA-1:cds;Parent=Msa0446160-mRNA-1 |
| chr3_3 | CDS | 21508846 | 21509091 | 21508846 | ID=Msa0446160-mRNA-1:cds;Parent=Msa0446160-mRNA-1 |
| chr3_3 | CDS | 21508619 | 21508812 | 21508619 | ID=Msa0446160-mRNA-1:cds;Parent=Msa0446160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
