Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446170 | XP_013459118.1 | 88.400 | 250 | 18 | 1 | 1 | 250 | 14 | 252 | 8.17e-117 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446170 | sp|Q9LXB8|PLPK1_ARATH | 54.577 | 284 | 72 | 6 | 13 | 244 | 30 | 308 | 1.01e-57 | 191 |
| Msa0446170 | sp|Q9LXB8|PLPK1_ARATH | 61.224 | 245 | 68 | 7 | 22 | 243 | 100 | 340 | 1.16e-54 | 182 |
| Msa0446170 | sp|Q9LXB8|PLPK1_ARATH | 58.242 | 91 | 30 | 2 | 22 | 106 | 282 | 370 | 6.25e-13 | 70.9 |
| Msa0446170 | sp|Q9LXB8|PLPK1_ARATH | 51.852 | 108 | 25 | 3 | 24 | 106 | 262 | 367 | 4.27e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446170 | I3S1U4 | 88.400 | 250 | 18 | 1 | 1 | 250 | 14 | 252 | 3.90e-117 | 344 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0087080 | Msa0446170 | 0.852241 | 5.254025e-61 | -8.615850e-47 |
| Msa0088080 | Msa0446170 | 0.834819 | 2.403522e-56 | -8.615850e-47 |
| Msa0179310 | Msa0446170 | 0.819704 | 1.010144e-52 | -8.615850e-47 |
| Msa0398920 | Msa0446170 | 0.931482 | 3.540948e-94 | -8.615850e-47 |
| Msa0446160 | Msa0446170 | 0.808424 | 3.117830e-50 | -8.615850e-47 |
| Msa0446170 | Msa0457650 | 0.888236 | 7.061572e-73 | -8.615850e-47 |
| Msa0446170 | Msa0457680 | 0.822613 | 2.157441e-53 | -8.615850e-47 |
| Msa0446170 | Msa0493500 | 0.803880 | 2.822003e-49 | -8.615850e-47 |
| Msa0446170 | Msa0493520 | 0.809406 | 1.922716e-50 | -8.615850e-47 |
| Msa0446170 | Msa0560060 | 0.815287 | 9.989725e-52 | -8.615850e-47 |
| Msa0446170 | Msa0773030 | 0.826831 | 2.186163e-54 | -8.615850e-47 |
| Msa0446170 | Msa0810330 | 0.804890 | 1.738372e-49 | -8.615850e-47 |
| Msa0446170 | Msa0850640 | 0.808906 | 2.459921e-50 | -8.615850e-47 |
| Msa0446170 | Msa1002110 | 0.813455 | 2.537523e-51 | -8.615850e-47 |
| Msa0446170 | Msa1087210 | 0.806375 | 8.480414e-50 | -8.615850e-47 |
| Msa0446170 | Msa1378730 | 0.877739 | 4.933448e-69 | -8.615850e-47 |
| Msa0351890 | Msa0446170 | 0.898632 | 4.385683e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446170 | MtrunA17_Chr3g0087151 | 88.400 | 250 | 18 | 1 | 1 | 250 | 14 | 252 | 7.51e-121 | 344 |
| Msa0446170 | MtrunA17_Chr3g0087231 | 57.357 | 333 | 57 | 7 | 1 | 250 | 14 | 344 | 5.69e-82 | 249 |
| Msa0446170 | MtrunA17_Chr3g0087211 | 55.620 | 347 | 57 | 8 | 1 | 250 | 14 | 360 | 4.93e-80 | 244 |
| Msa0446170 | MtrunA17_Chr3g0087041 | 79.570 | 186 | 16 | 3 | 1 | 186 | 14 | 177 | 2.91e-70 | 213 |
| Msa0446170 | MtrunA17_Chr3g0087041 | 71.895 | 153 | 35 | 4 | 101 | 250 | 37 | 184 | 8.60e-43 | 143 |
| Msa0446170 | MtrunA17_Chr3g0087161 | 51.064 | 94 | 41 | 2 | 1 | 94 | 14 | 102 | 5.62e-18 | 77.4 |
| Msa0446170 | MtrunA17_Chr4g0057451 | 19.433 | 247 | 176 | 7 | 15 | 243 | 214 | 455 | 2.00e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446170 | AT5G09530.1 | 54.577 | 284 | 72 | 6 | 13 | 244 | 30 | 308 | 1.03e-58 | 191 |
| Msa0446170 | AT5G09530.1 | 61.224 | 245 | 68 | 7 | 22 | 243 | 100 | 340 | 1.17e-55 | 182 |
| Msa0446170 | AT5G09530.1 | 58.242 | 91 | 30 | 2 | 22 | 106 | 282 | 370 | 6.35e-14 | 70.9 |
| Msa0446170 | AT5G09530.1 | 51.852 | 108 | 25 | 3 | 24 | 106 | 262 | 367 | 4.34e-13 | 68.6 |
| Msa0446170 | AT5G09520.1 | 46.269 | 134 | 51 | 2 | 1 | 134 | 16 | 128 | 8.68e-22 | 88.2 |
| Msa0446170 | AT5G09520.1 | 56.311 | 103 | 38 | 2 | 122 | 224 | 33 | 128 | 1.31e-18 | 79.7 |
| Msa0446170 | AT5G09520.1 | 55.769 | 104 | 36 | 2 | 139 | 242 | 37 | 130 | 2.28e-18 | 79.0 |
| Msa0446170 | AT5G09520.1 | 56.842 | 95 | 34 | 2 | 97 | 191 | 41 | 128 | 6.17e-16 | 72.4 |
| Msa0446170 | AT5G09520.1 | 55.914 | 93 | 34 | 1 | 158 | 250 | 34 | 119 | 3.89e-15 | 70.5 |
| Msa0446170 | AT5G09520.1 | 51.546 | 97 | 35 | 2 | 91 | 182 | 41 | 130 | 6.30e-13 | 64.3 |
| Msa0446170 | AT5G09520.1 | 50.962 | 104 | 38 | 3 | 104 | 204 | 37 | 130 | 5.45e-11 | 59.3 |
Find 86 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGTACCTTTGGTATTTC+TGG | 0.077856 | 3_3:-21509238 | Msa0446160:CDS |
| TCAGGTATCTTTGAAATTTC+TGG | 0.104685 | 3_3:-21509001 | Msa0446160:CDS |
| AGCTCAGGTTTGGGCAATTC+AGG | 0.197717 | 3_3:-21508953 | Msa0446160:CDS |
| GGAACATCTTTAGGAGTTTC+AGG | 0.202854 | 3_3:-21509361 | None:intergenic |
| AATTCTGGCTTAGGTAATTT+AGG | 0.214638 | 3_3:-21508779 | Msa0446160:CDS |
| TCAGGTACCTTAGGCAATTC+TGG | 0.231204 | 3_3:-21508794 | Msa0446160:intron |
| TCAGGTACCTTAGGTAATTC+TGG | 0.242157 | 3_3:-21508827 | Msa0446160:intron |
| TTAGGAGTTTCAGGGAATTT+AGG | 0.242346 | 3_3:-21509352 | None:intergenic |
| AACTCTAGCTTTGGTAATTC+AGG | 0.247874 | 3_3:-21509256 | Msa0446160:CDS |
| AATTCAGGGGCAATAAATTT+AGG | 0.255231 | 3_3:-21509043 | Msa0446160:CDS |
| AATTCTGGCTTTGGCAATTC+AGG | 0.265103 | 3_3:-21508812 | Msa0446160:intron |
| GACTTTAGGTAGCTCAGGTT+TGG | 0.265600 | 3_3:-21508963 | Msa0446160:CDS |
| AGTTCAGGCTTTGTCAATTC+AGG | 0.281138 | 3_3:-21509289 | Msa0446160:CDS |
| ACTTTAGGTTGCTCGGGTTT+TGG | 0.285159 | 3_3:-21509067 | Msa0446160:CDS |
| TCAGGTACCTTAGGGATATC+TGG | 0.288152 | 3_3:-21509139 | Msa0446160:CDS |
| TTTGGCAATTCAGGTACTTT+AGG | 0.288403 | 3_3:-21509082 | Msa0446160:intron |
| TTAGGTAATTTAGGAATCTT+AGG | 0.292668 | 3_3:-21508770 | Msa0446160:CDS |
| ATAGACAATTCGGGGACTTT+AGG | 0.311738 | 3_3:-21508977 | Msa0446160:CDS |
| AATTTAGGTAACTCAGGTTT+TGG | 0.311779 | 3_3:-21509028 | Msa0446160:CDS |
| AGCTCAGACTTTGGAAGTTC+AGG | 0.317949 | 3_3:-21508845 | Msa0446160:intron |
| TTTGTCAATTCAGGTATCTT+AGG | 0.317967 | 3_3:-21509280 | Msa0446160:CDS |
| TACCTTTGGTATTTCTGGCT+TGG | 0.319635 | 3_3:-21509233 | Msa0446160:CDS |
| AATTTAGGTAACTCGGGTTT+TGG | 0.322053 | 3_3:-21509337 | Msa0446160:CDS |
| ACCTTTGGTATTTCTGGCTT+GGG | 0.325986 | 3_3:-21509232 | Msa0446160:CDS |
| ACCTTAGGTAGTTCATGTTT+TGG | 0.327549 | 3_3:-21509100 | Msa0446160:intron |
| GTATTGGTTGGAACATCTTT+AGG | 0.328990 | 3_3:-21509370 | None:intergenic |
| TTAGGCAACTCGGGAACTTT+AGG | 0.329308 | 3_3:-21508926 | Msa0446160:CDS |
| TACCTTAGGGATATCTGGTT+TGG | 0.332667 | 3_3:-21509134 | Msa0446160:CDS |
| TTTGGTAATTCAGGTACCTT+AGG | 0.339853 | 3_3:-21509148 | Msa0446160:CDS |
| AACTTAGGTAGCTCAGACTT+TGG | 0.349422 | 3_3:-21508854 | Msa0446160:CDS |
| ATAGGTGGAAAATCAAGTTT+TGG | 0.353325 | 3_3:-21508731 | Msa0446160:CDS |
| ACCTTAGGTAGCTCGGGTTT+TGG | 0.355137 | 3_3:-21509166 | Msa0446160:CDS |
| ACTTTGGGAAACTCGGGTTT+TGG | 0.357337 | 3_3:-21508893 | Msa0446160:CDS |
| TTAGGCAACTCAGGAACTTT+GGG | 0.358876 | 3_3:-21508908 | Msa0446160:CDS |
| ACTTTAGGTAGCTCAGGTTT+GGG | 0.365399 | 3_3:-21508962 | Msa0446160:CDS |
| AATTTCTGGCATAGACAATT+CGG | 0.365865 | 3_3:-21508987 | Msa0446160:CDS |
| ACCTTAGGTAATTCTGGCTT+TGG | 0.366886 | 3_3:-21508821 | Msa0446160:intron |
| TTGGGCAACTCAGAGACTTT+TGG | 0.369313 | 3_3:-21509214 | Msa0446160:CDS |
| ACATTAACTTTAGGTAGTTC+AGG | 0.370017 | 3_3:-21509304 | Msa0446160:CDS |
| GGAAGCTCAGGCTTTGGTAT+AGG | 0.376080 | 3_3:-21508749 | Msa0446160:CDS |
| TTCAGGTACTTTAGGTTGCT+CGG | 0.381939 | 3_3:-21509074 | Msa0446160:intron |
| AGTTCAGGGACATTAACTTT+AGG | 0.387475 | 3_3:-21509313 | Msa0446160:CDS |
| CTCAGGAACTTTGGGAAACT+CGG | 0.389158 | 3_3:-21508900 | Msa0446160:CDS |
| TTTAGGCAACTCAGGAACTT+TGG | 0.393082 | 3_3:-21508909 | Msa0446160:CDS |
| ATCTTAGGAAGCTCAGGCTT+TGG | 0.394512 | 3_3:-21508755 | Msa0446160:CDS |
| ATTTCTGGCATAGACAATTC+GGG | 0.397522 | 3_3:-21508986 | Msa0446160:CDS |
| TTTGGTAATTCAGGTACCTT+TGG | 0.399783 | 3_3:-21509247 | Msa0446160:CDS |
| TTTGGAAGTTCAGGTACCTT+AGG | 0.416878 | 3_3:-21508836 | Msa0446160:intron |
| TTAGGAATCTTAGGAAGCTC+AGG | 0.422568 | 3_3:-21508761 | Msa0446160:CDS |
| ACCTTAGGGATATCTGGTTT+GGG | 0.423518 | 3_3:-21509133 | Msa0446160:CDS |
| ATCTTAGGTAACTCTAGCTT+TGG | 0.432161 | 3_3:-21509265 | Msa0446160:CDS |
| AGAGTATTACAATGGTTGTC+GGG | 0.433887 | 3_3:+21508672 | Msa0446170:CDS |
| AGTTCCAACTTAAGGAGTAT+TGG | 0.438613 | 3_3:-21509386 | None:intergenic |
| TTTGGCAATTCAGGTACCTT+AGG | 0.442441 | 3_3:-21508803 | Msa0446160:intron |
| TTTGGTAATTCAGGTACCTT+AGG | 0.444525 | 3_3:-21509181 | Msa0446160:CDS |
| TTCAGGTACCTTAGGTAGCT+CGG | 0.444849 | 3_3:-21509173 | Msa0446160:CDS |
| ACCTTAGGCAATTCTGGCTT+AGG | 0.463421 | 3_3:-21508788 | Msa0446160:CDS |
| TCGGGGACTTTAGGTAGCTC+AGG | 0.467048 | 3_3:-21508968 | Msa0446160:CDS |
| TTGGGCAATTCAGGGAACTT+AGG | 0.475381 | 3_3:-21508944 | Msa0446160:CDS |
| TTCAGGGAATTTAGGTAACT+CGG | 0.478958 | 3_3:-21509344 | None:intergenic |
| TTGGGCAATTCAGAGACCTT+AGG | 0.479741 | 3_3:-21509115 | Msa0446160:intron |
| AATTCAGGAACATTAAACTT+AGG | 0.490699 | 3_3:-21508869 | Msa0446160:CDS |
| GCAATAAATTTAGGTAACTC+AGG | 0.493164 | 3_3:-21509034 | Msa0446160:CDS |
| TTGGTAATTCAGGTACCTTA+GGG | 0.494321 | 3_3:-21509147 | Msa0446160:CDS |
| GAACATCTTTAGGAGTTTCA+GGG | 0.495266 | 3_3:-21509360 | None:intergenic |
| TTCAGGGAACTTAGGCAACT+CGG | 0.499436 | 3_3:-21508936 | Msa0446160:CDS |
| TCAGGTACCTTAGGTAGCTC+GGG | 0.499460 | 3_3:-21509172 | Msa0446160:CDS |
| TCAGGTACTTTAGGTTGCTC+GGG | 0.499954 | 3_3:-21509073 | Msa0446160:intron |
| AAGAGTATTACAATGGTTGT+CGG | 0.514321 | 3_3:+21508671 | Msa0446170:CDS |
| GCTCAGGTTTGGGCAATTCA+GGG | 0.523757 | 3_3:-21508952 | Msa0446160:CDS |
| CCAACTTAAGGAGTATTGGT+TGG | 0.525013 | 3_3:-21509382 | None:intergenic |
| GCCAAAACATGAACTACCTA+AGG | 0.527245 | 3_3:+21509099 | Msa0446170:CDS |
| TCAGGAACTTTGGGAAACTC+GGG | 0.528389 | 3_3:-21508899 | Msa0446160:CDS |
| AGCTCAGGCTTTGGTATAGG+TGG | 0.530445 | 3_3:-21508746 | Msa0446160:CDS |
| TCAGGGAATTTAGGTAACTC+GGG | 0.549724 | 3_3:-21509343 | None:intergenic |
| TCGGGAACTTTAGGCAACTC+AGG | 0.569614 | 3_3:-21508917 | Msa0446160:CDS |
| ACCAAAACCCGAGCTACCTA+AGG | 0.574183 | 3_3:+21509165 | Msa0446170:CDS |
| TCAGGGAACTTAGGCAACTC+GGG | 0.582113 | 3_3:-21508935 | Msa0446160:CDS |
| TTTCTGGCATAGACAATTCG+GGG | 0.596116 | 3_3:-21508985 | Msa0446160:CDS |
| GCCAAAGCCAGAATTACCTA+AGG | 0.599842 | 3_3:+21508820 | Msa0446170:CDS |
| ACCTAAGCCAGAATTGCCTA+AGG | 0.603337 | 3_3:+21508787 | Msa0446170:CDS |
| GCCCAAACCAGATATCCCTA+AGG | 0.632454 | 3_3:+21509132 | Msa0446170:CDS |
| GAGTATTACAATGGTTGTCG+GGG | 0.633099 | 3_3:+21508673 | Msa0446170:CDS |
| GTCAGCAAAGAGTATTACAA+TGG | 0.649491 | 3_3:+21508664 | Msa0446170:CDS |
| GCCCAAGCCAGAAATACCAA+AGG | 0.675655 | 3_3:+21509231 | Msa0446170:CDS |
| TCTAGAGTCGAACATACCTG+AGG | 0.701502 | 3_3:+21508706 | Msa0446170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTAGGTAATTTAGGAATCTT+AGG | - | chr3_3:21508773-21508792 | Msa0446160:CDS | 25.0% |
| ! | AATTCAGGAACATTAAACTT+AGG | - | chr3_3:21508872-21508891 | Msa0446160:CDS | 25.0% |
| ! | TTAGGTAATTTAGGAATCTT+AGG | - | chr3_3:21508773-21508792 | Msa0446160:CDS | 25.0% |
| ! | AATTCAGGAACATTAAACTT+AGG | - | chr3_3:21508872-21508891 | Msa0446160:CDS | 25.0% |
| !! | AAGAGTATTACAATGGTTGT+CGG | + | chr3_3:21508671-21508690 | Msa0446170:CDS | 30.0% |
| ! | ATAGGTGGAAAATCAAGTTT+TGG | - | chr3_3:21508734-21508753 | Msa0446160:CDS | 30.0% |
| !! | AATTCTGGCTTAGGTAATTT+AGG | - | chr3_3:21508782-21508801 | Msa0446160:CDS | 30.0% |
| !! | AATTTCTGGCATAGACAATT+CGG | - | chr3_3:21508990-21509009 | Msa0446160:CDS | 30.0% |
| !! | TCAGGTATCTTTGAAATTTC+TGG | - | chr3_3:21509004-21509023 | Msa0446160:CDS | 30.0% |
| ! | AATTTAGGTAACTCAGGTTT+TGG | - | chr3_3:21509031-21509050 | Msa0446160:CDS | 30.0% |
| GCAATAAATTTAGGTAACTC+AGG | - | chr3_3:21509037-21509056 | Msa0446160:CDS | 30.0% | |
| AATTCAGGGGCAATAAATTT+AGG | - | chr3_3:21509046-21509065 | Msa0446160:CDS | 30.0% | |
| TTTGTCAATTCAGGTATCTT+AGG | - | chr3_3:21509283-21509302 | Msa0446160:CDS | 30.0% | |
| ACATTAACTTTAGGTAGTTC+AGG | - | chr3_3:21509307-21509326 | Msa0446160:CDS | 30.0% | |
| !! | AAGAGTATTACAATGGTTGT+CGG | + | chr3_3:21508671-21508690 | Msa0446170:CDS | 30.0% |
| ! | ATAGGTGGAAAATCAAGTTT+TGG | - | chr3_3:21508734-21508753 | Msa0446160:CDS | 30.0% |
| !! | AATTCTGGCTTAGGTAATTT+AGG | - | chr3_3:21508782-21508801 | Msa0446160:CDS | 30.0% |
| !! | AATTTCTGGCATAGACAATT+CGG | - | chr3_3:21508990-21509009 | Msa0446160:CDS | 30.0% |
| !! | TCAGGTATCTTTGAAATTTC+TGG | - | chr3_3:21509004-21509023 | Msa0446160:CDS | 30.0% |
| ! | AATTTAGGTAACTCAGGTTT+TGG | - | chr3_3:21509031-21509050 | Msa0446160:CDS | 30.0% |
| GCAATAAATTTAGGTAACTC+AGG | - | chr3_3:21509037-21509056 | Msa0446160:CDS | 30.0% | |
| AATTCAGGGGCAATAAATTT+AGG | - | chr3_3:21509046-21509065 | Msa0446160:CDS | 30.0% | |
| TTTGTCAATTCAGGTATCTT+AGG | - | chr3_3:21509283-21509302 | Msa0446160:CDS | 30.0% | |
| ACATTAACTTTAGGTAGTTC+AGG | - | chr3_3:21509307-21509326 | Msa0446160:CDS | 30.0% | |
| !! | GTCAGCAAAGAGTATTACAA+TGG | + | chr3_3:21508664-21508683 | Msa0446170:CDS | 35.0% |
| ! | AGAGTATTACAATGGTTGTC+GGG | + | chr3_3:21508672-21508691 | Msa0446170:CDS | 35.0% |
| !!! | AAATCAAGTTTTGGAACCTC+AGG | - | chr3_3:21508725-21508744 | Msa0446160:CDS | 35.0% |
| !! | ATTTCTGGCATAGACAATTC+GGG | - | chr3_3:21508989-21509008 | Msa0446160:CDS | 35.0% |
| TTTGGCAATTCAGGTACTTT+AGG | - | chr3_3:21509085-21509104 | Msa0446160:intron | 35.0% | |
| !!! | AGTTCATGTTTTGGCAATTC+AGG | - | chr3_3:21509094-21509113 | Msa0446160:intron | 35.0% |
| ! | ACCTTAGGTAGTTCATGTTT+TGG | - | chr3_3:21509103-21509122 | Msa0446160:intron | 35.0% |
| ! | TTGGTAATTCAGGTACCTTA+GGG | - | chr3_3:21509150-21509169 | Msa0446160:CDS | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+AGG | - | chr3_3:21509151-21509170 | Msa0446160:CDS | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+AGG | - | chr3_3:21509151-21509170 | Msa0446160:CDS | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+TGG | - | chr3_3:21509151-21509170 | Msa0446160:CDS | 35.0% |
| !! | AACTCTAGCTTTGGTAATTC+AGG | - | chr3_3:21509259-21509278 | Msa0446160:CDS | 35.0% |
| ! | ATCTTAGGTAACTCTAGCTT+TGG | - | chr3_3:21509268-21509287 | Msa0446160:CDS | 35.0% |
| AGTTCAGGGACATTAACTTT+AGG | - | chr3_3:21509316-21509335 | Msa0446160:CDS | 35.0% | |
| ! | AATTTAGGTAACTCGGGTTT+TGG | - | chr3_3:21509340-21509359 | Msa0446160:CDS | 35.0% |
| TTCAGGGAATTTAGGTAACT+CGG | - | chr3_3:21509347-21509366 | None:intergenic | 35.0% | |
| TTAGGAGTTTCAGGGAATTT+AGG | - | chr3_3:21509355-21509374 | None:intergenic | 35.0% | |
| ! | GAACATCTTTAGGAGTTTCA+GGG | - | chr3_3:21509363-21509382 | None:intergenic | 35.0% |
| !! | GTATTGGTTGGAACATCTTT+AGG | - | chr3_3:21509373-21509392 | None:intergenic | 35.0% |
| !! | GTCAGCAAAGAGTATTACAA+TGG | + | chr3_3:21508664-21508683 | Msa0446170:CDS | 35.0% |
| ! | AGAGTATTACAATGGTTGTC+GGG | + | chr3_3:21508672-21508691 | Msa0446170:CDS | 35.0% |
| !!! | AAATCAAGTTTTGGAACCTC+AGG | - | chr3_3:21508725-21508744 | Msa0446160:CDS | 35.0% |
| !! | ATTTCTGGCATAGACAATTC+GGG | - | chr3_3:21508989-21509008 | Msa0446160:CDS | 35.0% |
| TTTGGCAATTCAGGTACTTT+AGG | - | chr3_3:21509085-21509104 | Msa0446160:intron | 35.0% | |
| !!! | AGTTCATGTTTTGGCAATTC+AGG | - | chr3_3:21509094-21509113 | Msa0446160:intron | 35.0% |
| ! | ACCTTAGGTAGTTCATGTTT+TGG | - | chr3_3:21509103-21509122 | Msa0446160:intron | 35.0% |
| ! | TTGGTAATTCAGGTACCTTA+GGG | - | chr3_3:21509150-21509169 | Msa0446160:CDS | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+AGG | - | chr3_3:21509151-21509170 | Msa0446160:CDS | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+AGG | - | chr3_3:21509151-21509170 | Msa0446160:CDS | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+TGG | - | chr3_3:21509151-21509170 | Msa0446160:CDS | 35.0% |
| !! | AACTCTAGCTTTGGTAATTC+AGG | - | chr3_3:21509259-21509278 | Msa0446160:CDS | 35.0% |
| ! | ATCTTAGGTAACTCTAGCTT+TGG | - | chr3_3:21509268-21509287 | Msa0446160:CDS | 35.0% |
| AGTTCAGGGACATTAACTTT+AGG | - | chr3_3:21509316-21509335 | Msa0446160:CDS | 35.0% | |
| ! | AATTTAGGTAACTCGGGTTT+TGG | - | chr3_3:21509340-21509359 | Msa0446160:CDS | 35.0% |
| TTCAGGGAATTTAGGTAACT+CGG | - | chr3_3:21509347-21509366 | None:intergenic | 35.0% | |
| TTAGGAGTTTCAGGGAATTT+AGG | - | chr3_3:21509355-21509374 | None:intergenic | 35.0% | |
| ! | GAACATCTTTAGGAGTTTCA+GGG | - | chr3_3:21509363-21509382 | None:intergenic | 35.0% |
| !! | GTATTGGTTGGAACATCTTT+AGG | - | chr3_3:21509373-21509392 | None:intergenic | 35.0% |
| GAGTATTACAATGGTTGTCG+GGG | + | chr3_3:21508673-21508692 | Msa0446170:CDS | 40.0% | |
| TTAGGAATCTTAGGAAGCTC+AGG | - | chr3_3:21508764-21508783 | Msa0446160:CDS | 40.0% | |
| TTTGGCAATTCAGGTACCTT+AGG | - | chr3_3:21508806-21508825 | Msa0446160:intron | 40.0% | |
| !! | AATTCTGGCTTTGGCAATTC+AGG | - | chr3_3:21508815-21508834 | Msa0446160:intron | 40.0% |
| !! | ACCTTAGGTAATTCTGGCTT+TGG | - | chr3_3:21508824-21508843 | Msa0446160:intron | 40.0% |
| TCAGGTACCTTAGGTAATTC+TGG | - | chr3_3:21508830-21508849 | Msa0446160:intron | 40.0% | |
| TTTGGAAGTTCAGGTACCTT+AGG | - | chr3_3:21508839-21508858 | Msa0446160:intron | 40.0% | |
| AACTTAGGTAGCTCAGACTT+TGG | - | chr3_3:21508857-21508876 | Msa0446160:CDS | 40.0% | |
| TTAGGCAACTCAGGAACTTT+GGG | - | chr3_3:21508911-21508930 | Msa0446160:CDS | 40.0% | |
| TTTAGGCAACTCAGGAACTT+TGG | - | chr3_3:21508912-21508931 | Msa0446160:CDS | 40.0% | |
| ACTTTAGGTAGCTCAGGTTT+GGG | - | chr3_3:21508965-21508984 | Msa0446160:CDS | 40.0% | |
| ATAGACAATTCGGGGACTTT+AGG | - | chr3_3:21508980-21508999 | Msa0446160:CDS | 40.0% | |
| ! | TTTCTGGCATAGACAATTCG+GGG | - | chr3_3:21508988-21509007 | Msa0446160:CDS | 40.0% |
| !! | AACTCAGGTTTTGGCAATTC+AGG | - | chr3_3:21509022-21509041 | Msa0446160:CDS | 40.0% |
| !! | TTCAGGTACTTTAGGTTGCT+CGG | - | chr3_3:21509077-21509096 | Msa0446160:intron | 40.0% |
| GCCAAAACATGAACTACCTA+AGG | + | chr3_3:21509099-21509118 | Msa0446170:CDS | 40.0% | |
| ! | ACCTTAGGGATATCTGGTTT+GGG | - | chr3_3:21509136-21509155 | Msa0446160:CDS | 40.0% |
| TACCTTAGGGATATCTGGTT+TGG | - | chr3_3:21509137-21509156 | Msa0446160:CDS | 40.0% | |
| !! | ACCTTTGGTATTTCTGGCTT+GGG | - | chr3_3:21509235-21509254 | Msa0446160:CDS | 40.0% |
| !! | TACCTTTGGTATTTCTGGCT+TGG | - | chr3_3:21509236-21509255 | Msa0446160:CDS | 40.0% |
| TCAGGTACCTTTGGTATTTC+TGG | - | chr3_3:21509241-21509260 | Msa0446160:CDS | 40.0% | |
| ! | AGTTCAGGCTTTGTCAATTC+AGG | - | chr3_3:21509292-21509311 | Msa0446160:CDS | 40.0% |
| TCAGGGAATTTAGGTAACTC+GGG | - | chr3_3:21509346-21509365 | None:intergenic | 40.0% | |
| ! | GGAACATCTTTAGGAGTTTC+AGG | - | chr3_3:21509364-21509383 | None:intergenic | 40.0% |
| GAGTATTACAATGGTTGTCG+GGG | + | chr3_3:21508673-21508692 | Msa0446170:CDS | 40.0% | |
| TTAGGAATCTTAGGAAGCTC+AGG | - | chr3_3:21508764-21508783 | Msa0446160:CDS | 40.0% | |
| TTTGGCAATTCAGGTACCTT+AGG | - | chr3_3:21508806-21508825 | Msa0446160:intron | 40.0% | |
| !! | AATTCTGGCTTTGGCAATTC+AGG | - | chr3_3:21508815-21508834 | Msa0446160:intron | 40.0% |
| !! | ACCTTAGGTAATTCTGGCTT+TGG | - | chr3_3:21508824-21508843 | Msa0446160:intron | 40.0% |
| TCAGGTACCTTAGGTAATTC+TGG | - | chr3_3:21508830-21508849 | Msa0446160:intron | 40.0% | |
| TTTGGAAGTTCAGGTACCTT+AGG | - | chr3_3:21508839-21508858 | Msa0446160:intron | 40.0% | |
| AACTTAGGTAGCTCAGACTT+TGG | - | chr3_3:21508857-21508876 | Msa0446160:CDS | 40.0% | |
| TTAGGCAACTCAGGAACTTT+GGG | - | chr3_3:21508911-21508930 | Msa0446160:CDS | 40.0% | |
| TTTAGGCAACTCAGGAACTT+TGG | - | chr3_3:21508912-21508931 | Msa0446160:CDS | 40.0% | |
| ACTTTAGGTAGCTCAGGTTT+GGG | - | chr3_3:21508965-21508984 | Msa0446160:CDS | 40.0% | |
| ATAGACAATTCGGGGACTTT+AGG | - | chr3_3:21508980-21508999 | Msa0446160:CDS | 40.0% | |
| ! | TTTCTGGCATAGACAATTCG+GGG | - | chr3_3:21508988-21509007 | Msa0446160:CDS | 40.0% |
| !! | AACTCAGGTTTTGGCAATTC+AGG | - | chr3_3:21509022-21509041 | Msa0446160:CDS | 40.0% |
| !! | TTCAGGTACTTTAGGTTGCT+CGG | - | chr3_3:21509077-21509096 | Msa0446160:intron | 40.0% |
| GCCAAAACATGAACTACCTA+AGG | + | chr3_3:21509099-21509118 | Msa0446170:CDS | 40.0% | |
| ! | ACCTTAGGGATATCTGGTTT+GGG | - | chr3_3:21509136-21509155 | Msa0446160:CDS | 40.0% |
| TACCTTAGGGATATCTGGTT+TGG | - | chr3_3:21509137-21509156 | Msa0446160:CDS | 40.0% | |
| !! | ACCTTTGGTATTTCTGGCTT+GGG | - | chr3_3:21509235-21509254 | Msa0446160:CDS | 40.0% |
| !! | TACCTTTGGTATTTCTGGCT+TGG | - | chr3_3:21509236-21509255 | Msa0446160:CDS | 40.0% |
| TCAGGTACCTTTGGTATTTC+TGG | - | chr3_3:21509241-21509260 | Msa0446160:CDS | 40.0% | |
| ! | AGTTCAGGCTTTGTCAATTC+AGG | - | chr3_3:21509292-21509311 | Msa0446160:CDS | 40.0% |
| TCAGGGAATTTAGGTAACTC+GGG | - | chr3_3:21509346-21509365 | None:intergenic | 40.0% | |
| ! | GGAACATCTTTAGGAGTTTC+AGG | - | chr3_3:21509364-21509383 | None:intergenic | 40.0% |
| ! | TCTAGAGTCGAACATACCTG+AGG | + | chr3_3:21508706-21508725 | Msa0446170:CDS | 45.0% |
| ATCTTAGGAAGCTCAGGCTT+TGG | - | chr3_3:21508758-21508777 | Msa0446160:CDS | 45.0% | |
| ACCTAAGCCAGAATTGCCTA+AGG | + | chr3_3:21508787-21508806 | Msa0446170:CDS | 45.0% | |
| !! | ACCTTAGGCAATTCTGGCTT+AGG | - | chr3_3:21508791-21508810 | Msa0446160:CDS | 45.0% |
| TCAGGTACCTTAGGCAATTC+TGG | - | chr3_3:21508797-21508816 | Msa0446160:intron | 45.0% | |
| GCCAAAGCCAGAATTACCTA+AGG | + | chr3_3:21508820-21508839 | Msa0446170:CDS | 45.0% | |
| ! | AGCTCAGACTTTGGAAGTTC+AGG | - | chr3_3:21508848-21508867 | Msa0446160:CDS | 45.0% |
| !! | AACTCGGGTTTTGGCAATTC+AGG | - | chr3_3:21508887-21508906 | Msa0446160:CDS | 45.0% |
| !! | ACTTTGGGAAACTCGGGTTT+TGG | - | chr3_3:21508896-21508915 | Msa0446160:CDS | 45.0% |
| ! | TCAGGAACTTTGGGAAACTC+GGG | - | chr3_3:21508902-21508921 | Msa0446160:CDS | 45.0% |
| ! | CTCAGGAACTTTGGGAAACT+CGG | - | chr3_3:21508903-21508922 | Msa0446160:CDS | 45.0% |
| TTAGGCAACTCGGGAACTTT+AGG | - | chr3_3:21508929-21508948 | Msa0446160:CDS | 45.0% | |
| TTCAGGGAACTTAGGCAACT+CGG | - | chr3_3:21508939-21508958 | Msa0446160:CDS | 45.0% | |
| TTGGGCAATTCAGGGAACTT+AGG | - | chr3_3:21508947-21508966 | Msa0446160:CDS | 45.0% | |
| GACTTTAGGTAGCTCAGGTT+TGG | - | chr3_3:21508966-21508985 | Msa0446160:CDS | 45.0% | |
| !!! | ACTTTAGGTTGCTCGGGTTT+TGG | - | chr3_3:21509070-21509089 | Msa0446160:CDS | 45.0% |
| !! | TCAGGTACTTTAGGTTGCTC+GGG | - | chr3_3:21509076-21509095 | Msa0446160:intron | 45.0% |
| TTGGGCAATTCAGAGACCTT+AGG | - | chr3_3:21509118-21509137 | Msa0446160:CDS | 45.0% | |
| TCAGGTACCTTAGGGATATC+TGG | - | chr3_3:21509142-21509161 | Msa0446160:CDS | 45.0% | |
| !! | AGCTCGGGTTTTGGTAATTC+AGG | - | chr3_3:21509160-21509179 | Msa0446160:CDS | 45.0% |
| TTCAGGTACCTTAGGTAGCT+CGG | - | chr3_3:21509176-21509195 | Msa0446160:CDS | 45.0% | |
| !! | AGCTCGGGTTTTGGTAATTC+AGG | - | chr3_3:21509160-21509179 | Msa0446160:CDS | 45.0% |
| !! | ACTTTTGGTAGCTCGGGTTT+TGG | - | chr3_3:21509202-21509221 | Msa0446160:CDS | 45.0% |
| !! | TCAGAGACTTTTGGTAGCTC+GGG | - | chr3_3:21509208-21509227 | Msa0446160:CDS | 45.0% |
| !! | CTCAGAGACTTTTGGTAGCT+CGG | - | chr3_3:21509209-21509228 | Msa0446160:CDS | 45.0% |
| ! | TTGGGCAACTCAGAGACTTT+TGG | - | chr3_3:21509217-21509236 | Msa0446160:CDS | 45.0% |
| ! | TCTAGAGTCGAACATACCTG+AGG | + | chr3_3:21508706-21508725 | Msa0446170:CDS | 45.0% |
| ATCTTAGGAAGCTCAGGCTT+TGG | - | chr3_3:21508758-21508777 | Msa0446160:CDS | 45.0% | |
| ACCTAAGCCAGAATTGCCTA+AGG | + | chr3_3:21508787-21508806 | Msa0446170:CDS | 45.0% | |
| !! | ACCTTAGGCAATTCTGGCTT+AGG | - | chr3_3:21508791-21508810 | Msa0446160:CDS | 45.0% |
| TCAGGTACCTTAGGCAATTC+TGG | - | chr3_3:21508797-21508816 | Msa0446160:intron | 45.0% | |
| GCCAAAGCCAGAATTACCTA+AGG | + | chr3_3:21508820-21508839 | Msa0446170:CDS | 45.0% | |
| ! | AGCTCAGACTTTGGAAGTTC+AGG | - | chr3_3:21508848-21508867 | Msa0446160:CDS | 45.0% |
| !! | AACTCGGGTTTTGGCAATTC+AGG | - | chr3_3:21508887-21508906 | Msa0446160:CDS | 45.0% |
| !! | ACTTTGGGAAACTCGGGTTT+TGG | - | chr3_3:21508896-21508915 | Msa0446160:CDS | 45.0% |
| ! | TCAGGAACTTTGGGAAACTC+GGG | - | chr3_3:21508902-21508921 | Msa0446160:CDS | 45.0% |
| ! | CTCAGGAACTTTGGGAAACT+CGG | - | chr3_3:21508903-21508922 | Msa0446160:CDS | 45.0% |
| TTAGGCAACTCGGGAACTTT+AGG | - | chr3_3:21508929-21508948 | Msa0446160:CDS | 45.0% | |
| TTCAGGGAACTTAGGCAACT+CGG | - | chr3_3:21508939-21508958 | Msa0446160:CDS | 45.0% | |
| TTGGGCAATTCAGGGAACTT+AGG | - | chr3_3:21508947-21508966 | Msa0446160:CDS | 45.0% | |
| GACTTTAGGTAGCTCAGGTT+TGG | - | chr3_3:21508966-21508985 | Msa0446160:CDS | 45.0% | |
| !!! | ACTTTAGGTTGCTCGGGTTT+TGG | - | chr3_3:21509070-21509089 | Msa0446160:CDS | 45.0% |
| !! | TCAGGTACTTTAGGTTGCTC+GGG | - | chr3_3:21509076-21509095 | Msa0446160:intron | 45.0% |
| TTGGGCAATTCAGAGACCTT+AGG | - | chr3_3:21509118-21509137 | Msa0446160:CDS | 45.0% | |
| TCAGGTACCTTAGGGATATC+TGG | - | chr3_3:21509142-21509161 | Msa0446160:CDS | 45.0% | |
| !! | AGCTCGGGTTTTGGTAATTC+AGG | - | chr3_3:21509160-21509179 | Msa0446160:CDS | 45.0% |
| TTCAGGTACCTTAGGTAGCT+CGG | - | chr3_3:21509176-21509195 | Msa0446160:CDS | 45.0% | |
| !! | AGCTCGGGTTTTGGTAATTC+AGG | - | chr3_3:21509160-21509179 | Msa0446160:CDS | 45.0% |
| !! | ACTTTTGGTAGCTCGGGTTT+TGG | - | chr3_3:21509202-21509221 | Msa0446160:CDS | 45.0% |
| !! | TCAGAGACTTTTGGTAGCTC+GGG | - | chr3_3:21509208-21509227 | Msa0446160:CDS | 45.0% |
| !! | CTCAGAGACTTTTGGTAGCT+CGG | - | chr3_3:21509209-21509228 | Msa0446160:CDS | 45.0% |
| ! | TTGGGCAACTCAGAGACTTT+TGG | - | chr3_3:21509217-21509236 | Msa0446160:CDS | 45.0% |
| ! | AGCTCAGGCTTTGGTATAGG+TGG | - | chr3_3:21508749-21508768 | Msa0446160:CDS | 50.0% |
| ! | GGAAGCTCAGGCTTTGGTAT+AGG | - | chr3_3:21508752-21508771 | Msa0446160:CDS | 50.0% |
| TCGGGAACTTTAGGCAACTC+AGG | - | chr3_3:21508920-21508939 | Msa0446160:CDS | 50.0% | |
| TCAGGGAACTTAGGCAACTC+GGG | - | chr3_3:21508938-21508957 | Msa0446160:CDS | 50.0% | |
| GCTCAGGTTTGGGCAATTCA+GGG | - | chr3_3:21508955-21508974 | Msa0446160:CDS | 50.0% | |
| AGCTCAGGTTTGGGCAATTC+AGG | - | chr3_3:21508956-21508975 | Msa0446160:CDS | 50.0% | |
| !! | CTCGGGTTTTGGCAATTCAG+GGG | - | chr3_3:21508885-21508904 | Msa0446160:CDS | 50.0% |
| !! | GCTCGGGTTTTGGCAATTCA+GGG | - | chr3_3:21509060-21509079 | Msa0446160:CDS | 50.0% |
| !! | TGCTCGGGTTTTGGCAATTC+AGG | - | chr3_3:21509061-21509080 | Msa0446160:CDS | 50.0% |
| GCCCAAACCAGATATCCCTA+AGG | + | chr3_3:21509132-21509151 | Msa0446170:CDS | 50.0% | |
| ACCAAAACCCGAGCTACCTA+AGG | + | chr3_3:21509165-21509184 | Msa0446170:CDS | 50.0% | |
| ! | ACCTTAGGTAGCTCGGGTTT+TGG | - | chr3_3:21509169-21509188 | Msa0446160:CDS | 50.0% |
| TCAGGTACCTTAGGTAGCTC+GGG | - | chr3_3:21509175-21509194 | Msa0446160:CDS | 50.0% | |
| GCCCAAGCCAGAAATACCAA+AGG | + | chr3_3:21509231-21509250 | Msa0446170:CDS | 50.0% | |
| !! | ACTCGGGTTTTGGCAGTTCA+GGG | - | chr3_3:21509330-21509349 | Msa0446160:CDS | 50.0% |
| !! | AACTCGGGTTTTGGCAGTTC+AGG | - | chr3_3:21509331-21509350 | Msa0446160:CDS | 50.0% |
| ! | AGCTCAGGCTTTGGTATAGG+TGG | - | chr3_3:21508749-21508768 | Msa0446160:CDS | 50.0% |
| ! | GGAAGCTCAGGCTTTGGTAT+AGG | - | chr3_3:21508752-21508771 | Msa0446160:CDS | 50.0% |
| TCGGGAACTTTAGGCAACTC+AGG | - | chr3_3:21508920-21508939 | Msa0446160:CDS | 50.0% | |
| TCAGGGAACTTAGGCAACTC+GGG | - | chr3_3:21508938-21508957 | Msa0446160:CDS | 50.0% | |
| GCTCAGGTTTGGGCAATTCA+GGG | - | chr3_3:21508955-21508974 | Msa0446160:CDS | 50.0% | |
| AGCTCAGGTTTGGGCAATTC+AGG | - | chr3_3:21508956-21508975 | Msa0446160:CDS | 50.0% | |
| !! | CTCGGGTTTTGGCAATTCAG+GGG | - | chr3_3:21508885-21508904 | Msa0446160:CDS | 50.0% |
| !! | GCTCGGGTTTTGGCAATTCA+GGG | - | chr3_3:21509060-21509079 | Msa0446160:CDS | 50.0% |
| !! | TGCTCGGGTTTTGGCAATTC+AGG | - | chr3_3:21509061-21509080 | Msa0446160:CDS | 50.0% |
| GCCCAAACCAGATATCCCTA+AGG | + | chr3_3:21509132-21509151 | Msa0446170:CDS | 50.0% | |
| ACCAAAACCCGAGCTACCTA+AGG | + | chr3_3:21509165-21509184 | Msa0446170:CDS | 50.0% | |
| ! | ACCTTAGGTAGCTCGGGTTT+TGG | - | chr3_3:21509169-21509188 | Msa0446160:CDS | 50.0% |
| TCAGGTACCTTAGGTAGCTC+GGG | - | chr3_3:21509175-21509194 | Msa0446160:CDS | 50.0% | |
| GCCCAAGCCAGAAATACCAA+AGG | + | chr3_3:21509231-21509250 | Msa0446170:CDS | 50.0% | |
| !! | ACTCGGGTTTTGGCAGTTCA+GGG | - | chr3_3:21509330-21509349 | Msa0446160:CDS | 50.0% |
| !! | AACTCGGGTTTTGGCAGTTC+AGG | - | chr3_3:21509331-21509350 | Msa0446160:CDS | 50.0% |
| TCGGGGACTTTAGGTAGCTC+AGG | - | chr3_3:21508971-21508990 | Msa0446160:CDS | 55.0% | |
| TCGGGGACTTTAGGTAGCTC+AGG | - | chr3_3:21508971-21508990 | Msa0446160:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 21508647 | 21509399 | 21508647 | ID=Msa0446170;Name=Msa0446170 |
| chr3_3 | mRNA | 21508647 | 21509399 | 21508647 | ID=Msa0446170-mRNA-1;Parent=Msa0446170;Name=Msa0446170-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|250 |
| chr3_3 | exon | 21508647 | 21509399 | 21508647 | ID=Msa0446170-mRNA-1:exon:4491;Parent=Msa0446170-mRNA-1 |
| chr3_3 | CDS | 21508647 | 21509399 | 21508647 | ID=Msa0446170-mRNA-1:cds;Parent=Msa0446170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
