Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448150 | XP_003599451.1 | 96.286 | 350 | 13 | 0 | 1 | 350 | 1 | 350 | 0.0 | 707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448150 | G7IX31 | 96.286 | 350 | 13 | 0 | 1 | 350 | 1 | 350 | 0.0 | 707 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0448150 | Msa1349730 | 0.927729 | 7.829150e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448150 | MtrunA17_Chr3g0090061 | 96.286 | 350 | 13 | 0 | 1 | 350 | 1 | 350 | 0.0 | 707 |
| Msa0448150 | MtrunA17_Chr6g0486001 | 30.723 | 166 | 109 | 4 | 174 | 335 | 131 | 294 | 1.92e-16 | 79.0 |
| Msa0448150 | MtrunA17_Chr6g0483441 | 25.121 | 207 | 132 | 6 | 129 | 329 | 87 | 276 | 1.22e-15 | 76.3 |
| Msa0448150 | MtrunA17_Chr4g0053001 | 25.161 | 155 | 114 | 2 | 177 | 329 | 158 | 312 | 1.37e-15 | 76.6 |
| Msa0448150 | MtrunA17_Chr2g0331671 | 24.759 | 311 | 190 | 10 | 29 | 335 | 27 | 297 | 4.74e-15 | 75.1 |
| Msa0448150 | MtrunA17_Chr8g0392551 | 29.032 | 155 | 98 | 4 | 182 | 329 | 129 | 278 | 1.61e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448150 | AT3G08490.1 | 39.571 | 326 | 128 | 9 | 29 | 350 | 11 | 271 | 1.50e-60 | 196 |
| Msa0448150 | AT3G24600.1 | 29.730 | 148 | 102 | 2 | 179 | 325 | 135 | 281 | 1.12e-13 | 71.2 |
| Msa0448150 | AT1G45688.1 | 23.984 | 246 | 148 | 7 | 129 | 350 | 111 | 341 | 1.72e-12 | 68.2 |
| Msa0448150 | AT5G42860.1 | 23.265 | 245 | 151 | 6 | 129 | 350 | 89 | 319 | 2.03e-12 | 67.8 |
| Msa0448150 | AT1G45688.2 | 30.252 | 119 | 71 | 3 | 129 | 247 | 111 | 217 | 5.07e-11 | 62.8 |
Find 105 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTCTCTCCCACTTATT+TGG | 0.159382 | 3_3:-27342841 | Msa0448150:five_prime_UTR |
| ACTCACCTCAAAGGAGATTT+TGG | 0.164708 | 3_3:+27342228 | None:intergenic |
| CTGATTCATGTGCTTGGATT+TGG | 0.255227 | 3_3:-27342330 | Msa0448150:CDS |
| ATTCTCTACGATTAAATTCA+TGG | 0.258492 | 3_3:+27342045 | None:intergenic |
| CATCTTTCCATTGCAATTAG+AGG | 0.258908 | 3_3:-27340782 | Msa0448150:CDS |
| GAAAATTTCATATCCATCTT+AGG | 0.268221 | 3_3:+27341989 | None:intergenic |
| ATCGGTTGGGTTCTTGTTCA+TGG | 0.276950 | 3_3:+27342578 | None:intergenic |
| CCTTCCCCTAGTTTAAATTC+TGG | 0.277887 | 3_3:+27342115 | None:intergenic |
| GGTGGGTCTCAGATCGGTTC+GGG | 0.290372 | 3_3:+27342614 | None:intergenic |
| TGGAGAGTTATGGTGAGTTT+TGG | 0.299754 | 3_3:-27342295 | Msa0448150:CDS |
| AAGATTACTTGTATCAATAT+TGG | 0.308847 | 3_3:+27340691 | None:intergenic |
| TGTTATGATGCATACCATTA+TGG | 0.316626 | 3_3:+27342782 | None:intergenic |
| GGGAGACTGTGGAGGGGCTT+TGG | 0.317147 | 3_3:+27342698 | None:intergenic |
| AAGTTGATTCGGCGTCGTTT+TGG | 0.320691 | 3_3:+27342644 | None:intergenic |
| TACAAGTACTATTAAATGCT+TGG | 0.358819 | 3_3:+27340563 | None:intergenic |
| TTCTCTCCCACTTATTTGGC+TGG | 0.378005 | 3_3:-27342837 | Msa0448150:five_prime_UTR |
| GGATTTGGCTGCAAGTTACT+TGG | 0.400048 | 3_3:-27342315 | Msa0448150:CDS |
| ACAATAATGTCTTACCATAA+TGG | 0.402119 | 3_3:-27342796 | Msa0448150:exon |
| TCTCAGATCGGTTCGGGGAG+TGG | 0.410356 | 3_3:+27342620 | None:intergenic |
| TGAGACCCACCGGACAAATC+TGG | 0.410441 | 3_3:-27342602 | Msa0448150:CDS |
| CGGTGGGTCTCAGATCGGTT+CGG | 0.417077 | 3_3:+27342613 | None:intergenic |
| CTCTAATTGCAATGGAAAGA+TGG | 0.417898 | 3_3:+27340783 | None:intergenic |
| ACAAGTACTATTAAATGCTT+GGG | 0.425815 | 3_3:+27340564 | None:intergenic |
| AACTTAGGCTTTACAAGTGC+TGG | 0.443593 | 3_3:+27340646 | None:intergenic |
| GCAAGTTACTTGGAGAGTTA+TGG | 0.444531 | 3_3:-27342305 | Msa0448150:CDS |
| GTTTGTCTATGCTATTTGCA+TGG | 0.445227 | 3_3:+27342677 | None:intergenic |
| TCGGTTGGGTTCTTGTTCAT+GGG | 0.461539 | 3_3:+27342579 | None:intergenic |
| AGTATCCACACGGGTAGGTT+TGG | 0.463829 | 3_3:+27342725 | None:intergenic |
| GTTCATGGGCCAGATTTGTC+CGG | 0.471770 | 3_3:+27342593 | None:intergenic |
| TGAAAATGCAAAGGGTAAGA+TGG | 0.472009 | 3_3:+27341967 | None:intergenic |
| TTCTTTGCCTCTAATTGCAA+TGG | 0.473022 | 3_3:+27340775 | None:intergenic |
| TCATATTCGTCCTCCTAAGA+TGG | 0.476180 | 3_3:-27342002 | Msa0448150:CDS |
| CCACTTTCTGCGTAGAGCTC+AGG | 0.480574 | 3_3:+27340811 | None:intergenic |
| CGGGGAGTGGAAAGTTGATT+CGG | 0.483375 | 3_3:+27342633 | None:intergenic |
| ATTGCATGTCAGAATCTTTG+TGG | 0.483834 | 3_3:+27342072 | None:intergenic |
| GGGGAAGGAGTGGATAGAAC+TGG | 0.484376 | 3_3:-27342100 | Msa0448150:CDS |
| GCTTCTTCCAGCACCATACA+TGG | 0.484750 | 3_3:+27340747 | None:intergenic |
| CGGCAAAGGGCAAATCGGTT+GGG | 0.486532 | 3_3:+27342565 | None:intergenic |
| ATAACTCTGATTCATGTGCT+TGG | 0.487741 | 3_3:-27342336 | Msa0448150:CDS |
| AACACCCAAAATCTCCTTTG+AGG | 0.489450 | 3_3:-27342233 | Msa0448150:intron |
| TCTACCCGGTGATGGAACTT+AGG | 0.492874 | 3_3:+27340631 | None:intergenic |
| GCAAAGAATAAGCCCATGTA+TGG | 0.500144 | 3_3:-27340760 | Msa0448150:CDS |
| AGGATTCCAGAATTTAAACT+AGG | 0.507497 | 3_3:-27342121 | Msa0448150:CDS |
| AATAAGCCCATGTATGGTGC+TGG | 0.508737 | 3_3:-27340754 | Msa0448150:CDS |
| CAAATAAGTGGGAGAGAAAG+TGG | 0.509490 | 3_3:+27342842 | None:intergenic |
| AAGCACATGAATCAGAGTTA+TGG | 0.515419 | 3_3:+27342338 | None:intergenic |
| TTGTTTCTTACATTCAAGAC+TGG | 0.515730 | 3_3:+27340371 | None:intergenic |
| GCGGCAAAGGGCAAATCGGT+TGG | 0.517811 | 3_3:+27342564 | None:intergenic |
| TTGTCCGGTGGGTCTCAGAT+CGG | 0.526253 | 3_3:+27342608 | None:intergenic |
| ATGGAGGACATGCTAGATTC+TGG | 0.527804 | 3_3:-27340724 | Msa0448150:CDS |
| CTTGAGTTCAAGCTTTGAAG+TGG | 0.530401 | 3_3:-27340671 | Msa0448150:CDS |
| GACATGCTAGATTCTGGAAG+AGG | 0.530423 | 3_3:-27340718 | Msa0448150:CDS |
| TTTGCATGGGAGACTGTGGA+GGG | 0.530637 | 3_3:+27342691 | None:intergenic |
| CATGGGCCAGATTTGTCCGG+TGG | 0.532166 | 3_3:+27342596 | None:intergenic |
| AGTAGCGGCAAAGGGCAAAT+CGG | 0.532244 | 3_3:+27342560 | None:intergenic |
| CCTGAGCTCTACGCAGAAAG+TGG | 0.537897 | 3_3:-27340811 | Msa0448150:CDS |
| ATTTGCATGGGAGACTGTGG+AGG | 0.538727 | 3_3:+27342690 | None:intergenic |
| TGATTGGTTGTTAAACGGAA+AGG | 0.539350 | 3_3:-27340455 | Msa0448150:three_prime_UTR |
| GAGAGGATGAGTAGCGGCAA+AGG | 0.541672 | 3_3:+27342551 | None:intergenic |
| CTTACAATTGAAAATGCAAA+GGG | 0.548971 | 3_3:+27341959 | None:intergenic |
| TAAACGGAAAGGAGAGAAAG+TGG | 0.549311 | 3_3:-27340444 | Msa0448150:three_prime_UTR |
| GGATTCCAGAATTTAAACTA+GGG | 0.550237 | 3_3:-27342120 | Msa0448150:CDS |
| TTTGTCTATGCTATTTGCAT+GGG | 0.550583 | 3_3:+27342678 | None:intergenic |
| CTATACATTCTACCCGGTGA+TGG | 0.555955 | 3_3:+27340623 | None:intergenic |
| TTCTTACATTCAAGACTGGA+GGG | 0.557311 | 3_3:+27340375 | None:intergenic |
| TAAAGCCTAAGTTCCATCAC+CGG | 0.557567 | 3_3:-27340636 | Msa0448150:CDS |
| TTATTGATTTGCAGATTGCA+AGG | 0.558955 | 3_3:-27342141 | Msa0448150:intron |
| AATTTCATATCCATCTTAGG+AGG | 0.559576 | 3_3:+27341992 | None:intergenic |
| CCAGAATTTAAACTAGGGGA+AGG | 0.562426 | 3_3:-27342115 | Msa0448150:CDS |
| AAACGATGATGATCACCATC+TGG | 0.567321 | 3_3:-27342467 | Msa0448150:CDS |
| TTTCTTACATTCAAGACTGG+AGG | 0.569658 | 3_3:+27340374 | None:intergenic |
| ACTTACAATTGAAAATGCAA+AGG | 0.570017 | 3_3:+27341958 | None:intergenic |
| GTCAGTGATGAGGATGAGAA+AGG | 0.571099 | 3_3:-27342418 | Msa0448150:CDS |
| AGAGGATGAGTAGCGGCAAA+GGG | 0.572763 | 3_3:+27342552 | None:intergenic |
| AGTACTCTATATAAATTATG+TGG | 0.579930 | 3_3:-27340510 | Msa0448150:three_prime_UTR |
| ATGGGCCAGATTTGTCCGGT+GGG | 0.581255 | 3_3:+27342597 | None:intergenic |
| TAGTATGCCAGCCAAATAAG+TGG | 0.581592 | 3_3:+27342830 | None:intergenic |
| CACAAGAAGGTCTCATATGA+CGG | 0.585874 | 3_3:-27342502 | Msa0448150:CDS |
| TCACCGGGTAGAATGTATAG+TGG | 0.588847 | 3_3:-27340620 | Msa0448150:CDS |
| CTTCTTCCAGCACCATACAT+GGG | 0.599255 | 3_3:+27340748 | None:intergenic |
| ATTTAAACTAGGGGAAGGAG+TGG | 0.600866 | 3_3:-27342110 | Msa0448150:CDS |
| GCTATTTGCATGGGAGACTG+TGG | 0.602108 | 3_3:+27342687 | None:intergenic |
| TCAGTGATGAGGATGAGAAA+GGG | 0.611348 | 3_3:-27342417 | Msa0448150:CDS |
| AATTGACGCACTCACCTCAA+AGG | 0.615175 | 3_3:+27342219 | None:intergenic |
| CTTTGGACATAGTATCCACA+CGG | 0.620751 | 3_3:+27342715 | None:intergenic |
| CGAACCGATCTGAGACCCAC+CGG | 0.621862 | 3_3:-27342612 | Msa0448150:CDS |
| TGCCGCTACTCATCCTCTCG+AGG | 0.625496 | 3_3:-27342547 | Msa0448150:CDS |
| AAAGCCTAAGTTCCATCACC+GGG | 0.638761 | 3_3:-27340635 | Msa0448150:CDS |
| AGAGTTGTTGGAGCCTCGAG+AGG | 0.640159 | 3_3:+27342534 | None:intergenic |
| GACATAGTATCCACACGGGT+AGG | 0.641710 | 3_3:+27342720 | None:intergenic |
| CTGGTGATCGTCAACGACAG+TGG | 0.642585 | 3_3:-27342448 | Msa0448150:CDS |
| GATTCCAGAATTTAAACTAG+GGG | 0.643576 | 3_3:-27342119 | Msa0448150:CDS |
| AGTATGCCAGCCAAATAAGT+GGG | 0.646192 | 3_3:+27342831 | None:intergenic |
| GTATGGTGCTGGAAGAAGCA+TGG | 0.653626 | 3_3:-27340743 | Msa0448150:CDS |
| TGTCGTTGACGATCACCAGA+TGG | 0.661179 | 3_3:+27342452 | None:intergenic |
| TTGCATGGGAGACTGTGGAG+GGG | 0.663470 | 3_3:+27342692 | None:intergenic |
| CGTCAACGACAGTGGCAGTG+TGG | 0.664148 | 3_3:-27342440 | Msa0448150:CDS |
| GTGGGTCTCAGATCGGTTCG+GGG | 0.674894 | 3_3:+27342615 | None:intergenic |
| TGGCAGTGTGGTCAGTGATG+AGG | 0.678995 | 3_3:-27342428 | Msa0448150:CDS |
| ACATACCAAACCTACCCGTG+TGG | 0.693956 | 3_3:-27342730 | Msa0448150:CDS |
| GAACCACTATACATTCTACC+CGG | 0.700805 | 3_3:+27340617 | None:intergenic |
| CGTCATATGAGACCTTCTTG+TGG | 0.706770 | 3_3:+27342503 | None:intergenic |
| AGCCTCGAGAGGATGAGTAG+CGG | 0.724978 | 3_3:+27342545 | None:intergenic |
| TTTGGACATAGTATCCACAC+GGG | 0.750481 | 3_3:+27342716 | None:intergenic |
| TGGTGCTGGAAGAAGCATGG+AGG | 0.797032 | 3_3:-27340740 | Msa0448150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTAATCACTAATTTTTT+TGG | - | chr3_3:27341482-27341501 | Msa0448150:intron | 10.0% |
| !!! | TTTTTATTTTTTTTTCCTTA+GGG | + | chr3_3:27342308-27342327 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTTTTTTTCCTT+AGG | + | chr3_3:27342309-27342328 | None:intergenic | 10.0% |
| !! | GAGTATTATTATGAAAAAAA+TGG | - | chr3_3:27340819-27340838 | Msa0448150:intron | 15.0% |
| !! | TATTATTATGAAAAAAATGG+AGG | - | chr3_3:27340822-27340841 | Msa0448150:intron | 15.0% |
| !! | ATTATTATGAAAAAAATGGA+GGG | - | chr3_3:27340823-27340842 | Msa0448150:intron | 15.0% |
| !! | TCAGATATATTATAAAAACT+TGG | - | chr3_3:27341632-27341651 | Msa0448150:intron | 15.0% |
| !!! | AGTTTTTTTCTTTTTTTTGA+AGG | - | chr3_3:27341826-27341845 | Msa0448150:intron | 15.0% |
| !! | TTTATGAAAAACAAAGTTTA+GGG | + | chr3_3:27342342-27342361 | None:intergenic | 15.0% |
| !!! | GAGAATAAATCAAGATTTTT+TGG | - | chr3_3:27341176-27341195 | Msa0448150:intron | 20.0% |
| !! | TAATCTTATAGTGATATATG+AGG | + | chr3_3:27341385-27341404 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTTTTTGAAGGA+AGG | - | chr3_3:27341830-27341849 | Msa0448150:intron | 20.0% |
| !!! | TTTTCTTTTTTTTGAAGGAA+GGG | - | chr3_3:27341831-27341850 | Msa0448150:intron | 20.0% |
| !!! | AGTTCAATCACTTTTTAATT+TGG | + | chr3_3:27342028-27342047 | None:intergenic | 20.0% |
| !! | AAATTAAAAAGTGATTGAAC+TGG | - | chr3_3:27342027-27342046 | Msa0448150:CDS | 20.0% |
| !! | GTTTATGAAAAACAAAGTTT+AGG | + | chr3_3:27342343-27342362 | None:intergenic | 20.0% |
| !! | TAAATGTTTGCATATATGTA+GGG | - | chr3_3:27342369-27342388 | Msa0448150:CDS | 20.0% |
| !! | AAGATTACTTGTATCAATAT+TGG | + | chr3_3:27342516-27342535 | None:intergenic | 20.0% |
| !! | AGTACTCTATATAAATTATG+TGG | - | chr3_3:27342694-27342713 | Msa0448150:CDS | 20.0% |
| !!! | TTTTTTGATTGGTTGTTAAA+CGG | - | chr3_3:27342744-27342763 | Msa0448150:CDS | 20.0% |
| ! | ACAATAATGTCTTACCATAA+TGG | - | chr3_3:27340408-27340427 | Msa0448150:three_prime_UTR | 25.0% |
| !! | GTCACTAATTTTTACTCATA+AGG | - | chr3_3:27341035-27341054 | Msa0448150:intron | 25.0% |
| ! | ATTCTCTACGATTAAATTCA+TGG | + | chr3_3:27341162-27341181 | None:intergenic | 25.0% |
| ! | GAAAATTTCATATCCATCTT+AGG | + | chr3_3:27341218-27341237 | None:intergenic | 25.0% |
| ! | CTTACAATTGAAAATGCAAA+GGG | + | chr3_3:27341248-27341267 | None:intergenic | 25.0% |
| ! | ACTTACAATTGAAAATGCAA+AGG | + | chr3_3:27341249-27341268 | None:intergenic | 25.0% |
| ! | TATCTGAAAAATTGTCAAAG+AGG | + | chr3_3:27341619-27341638 | None:intergenic | 25.0% |
| ! | CTTATACAGAAGGTAAAATT+AGG | + | chr3_3:27341693-27341712 | None:intergenic | 25.0% |
| !! | CTAATTTTACCTTCTGTATA+AGG | - | chr3_3:27341691-27341710 | Msa0448150:intron | 25.0% |
| !!! | AGAACTTTTTTTGTCAAAGA+GGG | - | chr3_3:27341793-27341812 | Msa0448150:intron | 25.0% |
| !!! | GGGAATGAACAATTTTAAAA+GGG | + | chr3_3:27342090-27342109 | None:intergenic | 25.0% |
| !! | AGGGAATGAACAATTTTAAA+AGG | + | chr3_3:27342089-27342108 | None:intergenic | 25.0% |
| !!! | GGAATGAACAATTTTAAAAG+AGG | - | chr3_3:27342091-27342110 | Msa0448150:CDS | 25.0% |
| ! | GTAAATGTTTGCATATATGT+AGG | - | chr3_3:27342368-27342387 | Msa0448150:CDS | 25.0% |
| ! | ACAAGTACTATTAAATGCTT+GGG | + | chr3_3:27342643-27342662 | None:intergenic | 25.0% |
| ! | TACAAGTACTATTAAATGCT+TGG | + | chr3_3:27342644-27342663 | None:intergenic | 25.0% |
| !! | AACTTCAAGCTTTTATCAAT+TGG | + | chr3_3:27342726-27342745 | None:intergenic | 25.0% |
| !!! | AAAGCTTGAAGTTTTTTGAT+TGG | - | chr3_3:27342733-27342752 | Msa0448150:CDS | 25.0% |
| TGTTATGATGCATACCATTA+TGG | + | chr3_3:27340425-27340444 | None:intergenic | 30.0% | |
| ! | TTTGTCTATGCTATTTGCAT+GGG | + | chr3_3:27340529-27340548 | None:intergenic | 30.0% |
| ATTATGAAAAAAATGGAGGG+TGG | - | chr3_3:27340826-27340845 | Msa0448150:intron | 30.0% | |
| !! | TTATTGATTTGCAGATTGCA+AGG | - | chr3_3:27341063-27341082 | Msa0448150:intron | 30.0% |
| AGGATTCCAGAATTTAAACT+AGG | - | chr3_3:27341083-27341102 | Msa0448150:intron | 30.0% | |
| GGATTCCAGAATTTAAACTA+GGG | - | chr3_3:27341084-27341103 | Msa0448150:intron | 30.0% | |
| GATTCCAGAATTTAAACTAG+GGG | - | chr3_3:27341085-27341104 | Msa0448150:intron | 30.0% | |
| AATTTCATATCCATCTTAGG+AGG | + | chr3_3:27341215-27341234 | None:intergenic | 30.0% | |
| TAGCATATGTCCTTGTTAAA+TGG | - | chr3_3:27341306-27341325 | Msa0448150:intron | 30.0% | |
| TAGTCTATGTCCATTTAACA+AGG | + | chr3_3:27341319-27341338 | None:intergenic | 30.0% | |
| !!! | TGAGGATCACTTTTTGTTTT+TGG | + | chr3_3:27341367-27341386 | None:intergenic | 30.0% |
| TTGCCATTAGAAATCACAAA+AGG | - | chr3_3:27341415-27341434 | Msa0448150:intron | 30.0% | |
| ! | TTGCCTTTTGTGATTTCTAA+TGG | + | chr3_3:27341421-27341440 | None:intergenic | 30.0% |
| AAAAATTGTCAAAGAGGCTT+AGG | + | chr3_3:27341613-27341632 | None:intergenic | 30.0% | |
| CTAATACATCCTTATACAGA+AGG | + | chr3_3:27341703-27341722 | None:intergenic | 30.0% | |
| !!! | GAGAACTTTTTTTGTCAAAG+AGG | - | chr3_3:27341792-27341811 | Msa0448150:intron | 30.0% |
| AGGGTTATATTTAGAGATAG+AGG | - | chr3_3:27341850-27341869 | Msa0448150:intron | 30.0% | |
| GTTATATTTAGAGATAGAGG+TGG | - | chr3_3:27341853-27341872 | Msa0448150:intron | 30.0% | |
| GTTAACTCACACACAATTTA+GGG | + | chr3_3:27341945-27341964 | None:intergenic | 30.0% | |
| AGTTAACTCACACACAATTT+AGG | + | chr3_3:27341946-27341965 | None:intergenic | 30.0% | |
| AGTTAACTCACCTTGAATTA+AGG | - | chr3_3:27342069-27342088 | Msa0448150:CDS | 30.0% | |
| GTTAACTCACCTTGAATTAA+GGG | - | chr3_3:27342070-27342089 | Msa0448150:CDS | 30.0% | |
| TTGTTCATTCCCTTAATTCA+AGG | + | chr3_3:27342082-27342101 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTACATTCAAGAC+TGG | + | chr3_3:27342836-27342855 | None:intergenic | 30.0% |
| ! | GTTTGTCTATGCTATTTGCA+TGG | + | chr3_3:27340530-27340549 | None:intergenic | 35.0% |
| AAGCACATGAATCAGAGTTA+TGG | + | chr3_3:27340869-27340888 | None:intergenic | 35.0% | |
| ATAACTCTGATTCATGTGCT+TGG | - | chr3_3:27340868-27340887 | Msa0448150:intron | 35.0% | |
| TCATGCTATCGCTATATCAA+TGG | + | chr3_3:27341014-27341033 | None:intergenic | 35.0% | |
| ATTGCATGTCAGAATCTTTG+TGG | + | chr3_3:27341135-27341154 | None:intergenic | 35.0% | |
| TGAAAATGCAAAGGGTAAGA+TGG | + | chr3_3:27341240-27341259 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTGGACACAATGTG+AGG | + | chr3_3:27341354-27341373 | None:intergenic | 35.0% |
| !!! | CACGCTAACAGTTTTAAGAT+AGG | - | chr3_3:27341997-27342016 | Msa0448150:CDS | 35.0% |
| CTCTAATTGCAATGGAAAGA+TGG | + | chr3_3:27342424-27342443 | None:intergenic | 35.0% | |
| CATCTTTCCATTGCAATTAG+AGG | - | chr3_3:27342422-27342441 | Msa0448150:CDS | 35.0% | |
| TTCTTTGCCTCTAATTGCAA+TGG | + | chr3_3:27342432-27342451 | None:intergenic | 35.0% | |
| ! | TGATTGGTTGTTAAACGGAA+AGG | - | chr3_3:27342749-27342768 | Msa0448150:CDS | 35.0% |
| TTCTTACATTCAAGACTGGA+GGG | + | chr3_3:27342832-27342851 | None:intergenic | 35.0% | |
| TTTCTTACATTCAAGACTGG+AGG | + | chr3_3:27342833-27342852 | None:intergenic | 35.0% | |
| CAAATAAGTGGGAGAGAAAG+TGG | + | chr3_3:27340365-27340384 | None:intergenic | 40.0% | |
| CACTTTCTCTCCCACTTATT+TGG | - | chr3_3:27340363-27340382 | Msa0448150:three_prime_UTR | 40.0% | |
| AGTATGCCAGCCAAATAAGT+GGG | + | chr3_3:27340376-27340395 | None:intergenic | 40.0% | |
| TAGTATGCCAGCCAAATAAG+TGG | + | chr3_3:27340377-27340396 | None:intergenic | 40.0% | |
| TTTGGACATAGTATCCACAC+GGG | + | chr3_3:27340491-27340510 | None:intergenic | 40.0% | |
| CTTTGGACATAGTATCCACA+CGG | + | chr3_3:27340492-27340511 | None:intergenic | 40.0% | |
| GTGGTGCAAAAAAGAGTTGT+TGG | + | chr3_3:27340685-27340704 | None:intergenic | 40.0% | |
| !!! | CTCTTTTTTGCACCACAAGA+AGG | - | chr3_3:27340689-27340708 | Msa0448150:CDS | 40.0% |
| CACAAGAAGGTCTCATATGA+CGG | - | chr3_3:27340702-27340721 | Msa0448150:CDS | 40.0% | |
| ! | GTGATCATCATCGTTTTCAG+TGG | + | chr3_3:27340733-27340752 | None:intergenic | 40.0% |
| AAACGATGATGATCACCATC+TGG | - | chr3_3:27340737-27340756 | Msa0448150:CDS | 40.0% | |
| TCAGTGATGAGGATGAGAAA+GGG | - | chr3_3:27340787-27340806 | Msa0448150:CDS | 40.0% | |
| AAAAAAATGGAGGGTGGAAG+AGG | - | chr3_3:27340832-27340851 | Msa0448150:intron | 40.0% | |
| CTGATTCATGTGCTTGGATT+TGG | - | chr3_3:27340874-27340893 | Msa0448150:intron | 40.0% | |
| GCAAGTTACTTGGAGAGTTA+TGG | - | chr3_3:27340899-27340918 | Msa0448150:intron | 40.0% | |
| ! | TGGAGAGTTATGGTGAGTTT+TGG | - | chr3_3:27340909-27340928 | Msa0448150:intron | 40.0% |
| !! | TCAAAGGAGATTTTGGGTGT+TGG | + | chr3_3:27340972-27340991 | None:intergenic | 40.0% |
| AACACCCAAAATCTCCTTTG+AGG | - | chr3_3:27340971-27340990 | Msa0448150:intron | 40.0% | |
| ! | CTCACCTCAAAGGAGATTTT+GGG | + | chr3_3:27340978-27340997 | None:intergenic | 40.0% |
| ! | ACTCACCTCAAAGGAGATTT+TGG | + | chr3_3:27340979-27340998 | None:intergenic | 40.0% |
| CCTTCCCCTAGTTTAAATTC+TGG | + | chr3_3:27341092-27341111 | None:intergenic | 40.0% | |
| CCAGAATTTAAACTAGGGGA+AGG | - | chr3_3:27341089-27341108 | Msa0448150:intron | 40.0% | |
| ATTTAAACTAGGGGAAGGAG+TGG | - | chr3_3:27341094-27341113 | Msa0448150:intron | 40.0% | |
| TCATATTCGTCCTCCTAAGA+TGG | - | chr3_3:27341202-27341221 | Msa0448150:intron | 40.0% | |
| !!! | TATTTTAGTCCTCCTACGAG+AGG | - | chr3_3:27341879-27341898 | Msa0448150:intron | 40.0% |
| !! | ATTTTAGTCCTCCTACGAGA+GGG | - | chr3_3:27341880-27341899 | Msa0448150:intron | 40.0% |
| AATTGATAAGACCCTCTCGT+AGG | + | chr3_3:27341894-27341913 | None:intergenic | 40.0% | |
| GTGTAGATAGCAAGACATTG+AGG | + | chr3_3:27342177-27342196 | None:intergenic | 40.0% | |
| !! | CTCTGTATTTTGGGAATGCA+GGG | + | chr3_3:27342223-27342242 | None:intergenic | 40.0% |
| CTGCATTCCCAAAATACAGA+GGG | - | chr3_3:27342222-27342241 | Msa0448150:intron | 40.0% | |
| CATATGTAGCATCATCCCTA+AGG | - | chr3_3:27342290-27342309 | Msa0448150:CDS | 40.0% | |
| GCAAAGAATAAGCCCATGTA+TGG | - | chr3_3:27342444-27342463 | Msa0448150:CDS | 40.0% | |
| !! | CTTGAGTTCAAGCTTTGAAG+TGG | - | chr3_3:27342533-27342552 | Msa0448150:CDS | 40.0% |
| AACTTAGGCTTTACAAGTGC+TGG | + | chr3_3:27342561-27342580 | None:intergenic | 40.0% | |
| TAAAGCCTAAGTTCCATCAC+CGG | - | chr3_3:27342568-27342587 | Msa0448150:CDS | 40.0% | |
| GAACCACTATACATTCTACC+CGG | + | chr3_3:27342590-27342609 | None:intergenic | 40.0% | |
| TAAACGGAAAGGAGAGAAAG+TGG | - | chr3_3:27342760-27342779 | Msa0448150:CDS | 40.0% | |
| TTCTCTCCCACTTATTTGGC+TGG | - | chr3_3:27340367-27340386 | Msa0448150:three_prime_UTR | 45.0% | |
| !!! | AAGTTGATTCGGCGTCGTTT+TGG | + | chr3_3:27340563-27340582 | None:intergenic | 45.0% |
| TCGGTTGGGTTCTTGTTCAT+GGG | + | chr3_3:27340628-27340647 | None:intergenic | 45.0% | |
| ATCGGTTGGGTTCTTGTTCA+TGG | + | chr3_3:27340629-27340648 | None:intergenic | 45.0% | |
| CGTCATATGAGACCTTCTTG+TGG | + | chr3_3:27340704-27340723 | None:intergenic | 45.0% | |
| GTCAGTGATGAGGATGAGAA+AGG | - | chr3_3:27340786-27340805 | Msa0448150:CDS | 45.0% | |
| GGATTTGGCTGCAAGTTACT+TGG | - | chr3_3:27340889-27340908 | Msa0448150:intron | 45.0% | |
| !!! | AAGGAGATTTTGGGTGTTGG+AGG | + | chr3_3:27340969-27340988 | None:intergenic | 45.0% |
| AATTGACGCACTCACCTCAA+AGG | + | chr3_3:27340988-27341007 | None:intergenic | 45.0% | |
| !! | TGTATTTTGGGAATGCAGGG+AGG | + | chr3_3:27342220-27342239 | None:intergenic | 45.0% |
| !! | CCTCTGTATTTTGGGAATGC+AGG | + | chr3_3:27342224-27342243 | None:intergenic | 45.0% |
| CCTGCATTCCCAAAATACAG+AGG | - | chr3_3:27342221-27342240 | Msa0448150:intron | 45.0% | |
| ! | CAGCACACCCTCTGTATTTT+GGG | + | chr3_3:27342232-27342251 | None:intergenic | 45.0% |
| ! | AGAGGGTGTGCTGGAATTTA+TGG | - | chr3_3:27342239-27342258 | Msa0448150:CDS | 45.0% |
| ! | GAGGGTGTGCTGGAATTTAT+GGG | - | chr3_3:27342240-27342259 | Msa0448150:CDS | 45.0% |
| AGGGTGTGCTGGAATTTATG+GGG | - | chr3_3:27342241-27342260 | Msa0448150:CDS | 45.0% | |
| AATAAGCCCATGTATGGTGC+TGG | - | chr3_3:27342450-27342469 | Msa0448150:CDS | 45.0% | |
| CTTCTTCCAGCACCATACAT+GGG | + | chr3_3:27342459-27342478 | None:intergenic | 45.0% | |
| ATGGAGGACATGCTAGATTC+TGG | - | chr3_3:27342480-27342499 | Msa0448150:CDS | 45.0% | |
| ! | GACATGCTAGATTCTGGAAG+AGG | - | chr3_3:27342486-27342505 | Msa0448150:CDS | 45.0% |
| AAAGCCTAAGTTCCATCACC+GGG | - | chr3_3:27342569-27342588 | Msa0448150:CDS | 45.0% | |
| CTATACATTCTACCCGGTGA+TGG | + | chr3_3:27342584-27342603 | None:intergenic | 45.0% | |
| TCACCGGGTAGAATGTATAG+TGG | - | chr3_3:27342584-27342603 | Msa0448150:CDS | 45.0% | |
| !!! | ATTAGTTTTTTTTATAATAT+AGG | - | chr3_3:27342137-27342156 | Msa0448150:intron | 5.0% |
| !!! | TTAGTTTTTTTTATAATATA+GGG | - | chr3_3:27342138-27342157 | Msa0448150:intron | 5.0% |
| ACATACCAAACCTACCCGTG+TGG | - | chr3_3:27340474-27340493 | Msa0448150:three_prime_UTR | 50.0% | |
| AGTATCCACACGGGTAGGTT+TGG | + | chr3_3:27340482-27340501 | None:intergenic | 50.0% | |
| GACATAGTATCCACACGGGT+AGG | + | chr3_3:27340487-27340506 | None:intergenic | 50.0% | |
| TTTGCATGGGAGACTGTGGA+GGG | + | chr3_3:27340516-27340535 | None:intergenic | 50.0% | |
| ATTTGCATGGGAGACTGTGG+AGG | + | chr3_3:27340517-27340536 | None:intergenic | 50.0% | |
| GCTATTTGCATGGGAGACTG+TGG | + | chr3_3:27340520-27340539 | None:intergenic | 50.0% | |
| ! | CGGGGAGTGGAAAGTTGATT+CGG | + | chr3_3:27340574-27340593 | None:intergenic | 50.0% |
| GTTCATGGGCCAGATTTGTC+CGG | + | chr3_3:27340614-27340633 | None:intergenic | 50.0% | |
| AGTAGCGGCAAAGGGCAAAT+CGG | + | chr3_3:27340647-27340666 | None:intergenic | 50.0% | |
| AGAGGATGAGTAGCGGCAAA+GGG | + | chr3_3:27340655-27340674 | None:intergenic | 50.0% | |
| TGTCGTTGACGATCACCAGA+TGG | + | chr3_3:27340755-27340774 | None:intergenic | 50.0% | |
| TGATAAGACCCTCTCGTAGG+AGG | + | chr3_3:27341891-27341910 | None:intergenic | 50.0% | |
| ! | CCAGCACACCCTCTGTATTT+TGG | + | chr3_3:27342233-27342252 | None:intergenic | 50.0% |
| ! | CCAAAATACAGAGGGTGTGC+TGG | - | chr3_3:27342230-27342249 | Msa0448150:intron | 50.0% |
| GCTTCTTCCAGCACCATACA+TGG | + | chr3_3:27342460-27342479 | None:intergenic | 50.0% | |
| ! | GTATGGTGCTGGAAGAAGCA+TGG | - | chr3_3:27342461-27342480 | Msa0448150:CDS | 50.0% |
| !! | TCTACCCGGTGATGGAACTT+AGG | + | chr3_3:27342576-27342595 | None:intergenic | 50.0% |
| TTGCATGGGAGACTGTGGAG+GGG | + | chr3_3:27340515-27340534 | None:intergenic | 55.0% | |
| TTGTCCGGTGGGTCTCAGAT+CGG | + | chr3_3:27340599-27340618 | None:intergenic | 55.0% | |
| TGAGACCCACCGGACAAATC+TGG | - | chr3_3:27340602-27340621 | Msa0448150:CDS | 55.0% | |
| ATGGGCCAGATTTGTCCGGT+GGG | + | chr3_3:27340610-27340629 | None:intergenic | 55.0% | |
| CGGCAAAGGGCAAATCGGTT+GGG | + | chr3_3:27340642-27340661 | None:intergenic | 55.0% | |
| GAGAGGATGAGTAGCGGCAA+AGG | + | chr3_3:27340656-27340675 | None:intergenic | 55.0% | |
| AGCCTCGAGAGGATGAGTAG+CGG | + | chr3_3:27340662-27340681 | None:intergenic | 55.0% | |
| AGAGTTGTTGGAGCCTCGAG+AGG | + | chr3_3:27340673-27340692 | None:intergenic | 55.0% | |
| CTGGTGATCGTCAACGACAG+TGG | - | chr3_3:27340756-27340775 | Msa0448150:CDS | 55.0% | |
| TGGCAGTGTGGTCAGTGATG+AGG | - | chr3_3:27340776-27340795 | Msa0448150:CDS | 55.0% | |
| GGGGAAGGAGTGGATAGAAC+TGG | - | chr3_3:27341104-27341123 | Msa0448150:intron | 55.0% | |
| !! | GGAGGAGTGGGTTGCAATTG+TGG | + | chr3_3:27342202-27342221 | None:intergenic | 55.0% |
| TTGGGAATGCAGGGAGGAGT+GGG | + | chr3_3:27342214-27342233 | None:intergenic | 55.0% | |
| TTTGGGAATGCAGGGAGGAG+TGG | + | chr3_3:27342215-27342234 | None:intergenic | 55.0% | |
| CCACTTTCTGCGTAGAGCTC+AGG | + | chr3_3:27342396-27342415 | None:intergenic | 55.0% | |
| CCTGAGCTCTACGCAGAAAG+TGG | - | chr3_3:27342393-27342412 | Msa0448150:CDS | 55.0% | |
| ! | TGGTGCTGGAAGAAGCATGG+AGG | - | chr3_3:27342464-27342483 | Msa0448150:CDS | 55.0% |
| !! | TCTCAGATCGGTTCGGGGAG+TGG | + | chr3_3:27340587-27340606 | None:intergenic | 60.0% |
| !! | GTGGGTCTCAGATCGGTTCG+GGG | + | chr3_3:27340592-27340611 | None:intergenic | 60.0% |
| ! | GGTGGGTCTCAGATCGGTTC+GGG | + | chr3_3:27340593-27340612 | None:intergenic | 60.0% |
| CGGTGGGTCTCAGATCGGTT+CGG | + | chr3_3:27340594-27340613 | None:intergenic | 60.0% | |
| ! | CGAACCGATCTGAGACCCAC+CGG | - | chr3_3:27340592-27340611 | Msa0448150:CDS | 60.0% |
| CATGGGCCAGATTTGTCCGG+TGG | + | chr3_3:27340611-27340630 | None:intergenic | 60.0% | |
| GCGGCAAAGGGCAAATCGGT+TGG | + | chr3_3:27340643-27340662 | None:intergenic | 60.0% | |
| TGCCGCTACTCATCCTCTCG+AGG | - | chr3_3:27340657-27340676 | Msa0448150:CDS | 60.0% | |
| CGTCAACGACAGTGGCAGTG+TGG | - | chr3_3:27340764-27340783 | Msa0448150:CDS | 60.0% | |
| GGGAGACTGTGGAGGGGCTT+TGG | + | chr3_3:27340509-27340528 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 27340335 | 27342891 | 27340335 | ID=Msa0448150;Name=Msa0448150 |
| chr3_3 | mRNA | 27340335 | 27342891 | 27340335 | ID=Msa0448150-mRNA-1;Parent=Msa0448150;Name=Msa0448150-mRNA-1;_AED=0.03;_eAED=0.03;_QI=79|1|1|1|1|1|3|214|350 |
| chr3_3 | exon | 27340335 | 27340836 | 27340335 | ID=Msa0448150-mRNA-1:exon:5357;Parent=Msa0448150-mRNA-1 |
| chr3_3 | exon | 27341964 | 27342149 | 27341964 | ID=Msa0448150-mRNA-1:exon:5356;Parent=Msa0448150-mRNA-1 |
| chr3_3 | exon | 27342234 | 27342891 | 27342234 | ID=Msa0448150-mRNA-1:exon:5355;Parent=Msa0448150-mRNA-1 |
| chr3_3 | five_prime_UTR | 27342813 | 27342891 | 27342813 | ID=Msa0448150-mRNA-1:five_prime_utr;Parent=Msa0448150-mRNA-1 |
| chr3_3 | CDS | 27342234 | 27342812 | 27342234 | ID=Msa0448150-mRNA-1:cds;Parent=Msa0448150-mRNA-1 |
| chr3_3 | CDS | 27341964 | 27342149 | 27341964 | ID=Msa0448150-mRNA-1:cds;Parent=Msa0448150-mRNA-1 |
| chr3_3 | CDS | 27340549 | 27340836 | 27340549 | ID=Msa0448150-mRNA-1:cds;Parent=Msa0448150-mRNA-1 |
| chr3_3 | three_prime_UTR | 27340335 | 27340548 | 27340335 | ID=Msa0448150-mRNA-1:three_prime_utr;Parent=Msa0448150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
