Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449370 | AES67379.2 | 56.757 | 703 | 290 | 9 | 136 | 836 | 525 | 1215 | 0.0 | 838 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449370 | G7IU29 | 56.757 | 703 | 290 | 9 | 136 | 836 | 525 | 1215 | 0.0 | 838 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0117050 | Msa0449370 | 0.834578 | 2.764228e-56 | -8.615850e-47 |
| Msa0449370 | Msa0967280 | 0.800796 | 1.218022e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449370 | MtrunA17_Chr2g0325841 | 55.961 | 713 | 290 | 10 | 136 | 836 | 494 | 1194 | 0.0 | 830 |
| Msa0449370 | MtrunA17_Chr4g0010671 | 54.783 | 460 | 188 | 8 | 134 | 593 | 4 | 443 | 4.26e-157 | 471 |
| Msa0449370 | MtrunA17_Chr4g0010671 | 48.889 | 90 | 37 | 2 | 393 | 482 | 450 | 530 | 3.22e-15 | 79.7 |
| Msa0449370 | MtrunA17_Chr1g0153901 | 36.145 | 415 | 228 | 9 | 137 | 526 | 8 | 410 | 3.75e-59 | 211 |
| Msa0449370 | MtrunA17_Chr1g0153901 | 32.593 | 135 | 84 | 2 | 614 | 741 | 405 | 539 | 2.57e-17 | 86.3 |
| Msa0449370 | MtrunA17_Chr6g0469071 | 35.507 | 414 | 231 | 8 | 137 | 526 | 8 | 409 | 5.94e-59 | 212 |
| Msa0449370 | MtrunA17_Chr6g0469071 | 32.609 | 230 | 129 | 4 | 614 | 836 | 404 | 614 | 2.14e-33 | 137 |
| Msa0449370 | MtrunA17_Chr5g0434431 | 36.782 | 174 | 104 | 2 | 667 | 836 | 1 | 172 | 6.98e-33 | 125 |
| Msa0449370 | MtrunA17_Chr6g0453701 | 95.918 | 49 | 2 | 0 | 793 | 841 | 1 | 49 | 1.41e-27 | 105 |
| Msa0449370 | MtrunA17_Chr6g0466851 | 23.881 | 469 | 289 | 19 | 148 | 599 | 34 | 451 | 2.35e-20 | 96.7 |
| Msa0449370 | MtrunA17_Chr1g0174011 | 36.264 | 91 | 56 | 1 | 746 | 836 | 6 | 94 | 7.22e-14 | 68.2 |
| Msa0449370 | MtrunA17_Chr1g0153911 | 36.364 | 88 | 54 | 1 | 749 | 836 | 1 | 86 | 3.88e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 170 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAACATGTTGGGAAATT+TGG | 0.085053 | 3_3:-32525229 | None:intergenic |
| GACTCTATTCACCCTCTTAT+TGG | 0.157530 | 3_3:-32523273 | None:intergenic |
| ACGCTGTGCAAGTTTGATTT+TGG | 0.173569 | 3_3:+32526963 | Msa0449370:CDS |
| TGCACCTCTAACTCTCTTTC+TGG | 0.177352 | 3_3:-32523519 | None:intergenic |
| GCCTCACGATTCTACGAATA+TGG | 0.197476 | 3_3:+32525849 | Msa0449370:CDS |
| CCTCCCAACAAGAGATATTA+TGG | 0.231757 | 3_3:+32525799 | Msa0449370:CDS |
| ACATATAATTCACACTCTTC+TGG | 0.254643 | 3_3:-32525331 | None:intergenic |
| TTTGGTCCACTTTCTCATTA+TGG | 0.256019 | 3_3:+32525082 | Msa0449370:CDS |
| GCGGGAGGATCCTTACTTTC+TGG | 0.262037 | 3_3:+32524032 | Msa0449370:CDS |
| TATAACAGGAGAAAAGAAAT+AGG | 0.271660 | 3_3:+32524131 | Msa0449370:intron |
| ACAAGGAGATATTTAAATAA+TGG | 0.276500 | 3_3:+32523934 | Msa0449370:CDS |
| GTGGGAATTAGGCAATATTT+TGG | 0.277082 | 3_3:+32525064 | Msa0449370:CDS |
| TAGAAGCAAAGTCAGTATTT+TGG | 0.299421 | 3_3:+32523670 | Msa0449370:CDS |
| GAGAACATGTTGGGAAATTT+GGG | 0.303343 | 3_3:-32525228 | None:intergenic |
| ATCCACTTCTCATGACGTTT+TGG | 0.304495 | 3_3:-32524301 | None:intergenic |
| TTTGAAATATCATGAGTATC+AGG | 0.307585 | 3_3:-32523850 | None:intergenic |
| TATTATTGTAGTGCTATAGA+AGG | 0.310711 | 3_3:+32526550 | Msa0449370:intron |
| CATAATCAGCTGTTAGAAAA+TGG | 0.314358 | 3_3:+32525412 | Msa0449370:CDS |
| TGGGTGGAGGTGTGGGAATT+AGG | 0.321825 | 3_3:+32525053 | Msa0449370:CDS |
| CATTGAAAAGTTGATGTTAA+GGG | 0.338244 | 3_3:+32525721 | Msa0449370:CDS |
| TCTGTGTCTAGTTTCTAATA+AGG | 0.351086 | 3_3:+32525555 | Msa0449370:CDS |
| ACATCCTGTGAAGTTCGATT+TGG | 0.355404 | 3_3:+32525757 | Msa0449370:CDS |
| GTCACCTCATTTGTGGGCAT+GGG | 0.356196 | 3_3:-32525484 | None:intergenic |
| CAAGGAGATATTTAAATAAT+GGG | 0.358220 | 3_3:+32523935 | Msa0449370:CDS |
| GCGGGATTTATCATCTATTC+CGG | 0.359802 | 3_3:+32525189 | Msa0449370:CDS |
| GGAACGCCTCTGTACTCAAT+TGG | 0.367411 | 3_3:+32526112 | Msa0449370:CDS |
| ATAACAGGAGAAAAGAAATA+GGG | 0.368760 | 3_3:+32524132 | Msa0449370:intron |
| TATTTAAATATCTCCTTGTC+AGG | 0.372950 | 3_3:-32523930 | None:intergenic |
| ACCTTTGTCACCTCATTTGT+GGG | 0.374041 | 3_3:-32525490 | None:intergenic |
| CATTACCGACTCATGGGATA+TGG | 0.375060 | 3_3:+32526793 | Msa0449370:CDS |
| TTCTAACAGCTGATTATGTA+TGG | 0.377840 | 3_3:-32525407 | None:intergenic |
| AAGAGGGTGAATAGACAAAT+TGG | 0.379699 | 3_3:+32523134 | Msa0449370:CDS |
| TGTCACCTCATTTGTGGGCA+TGG | 0.384014 | 3_3:-32525485 | None:intergenic |
| CCTACCAGAAAGAGAGTTAG+AGG | 0.384109 | 3_3:+32523515 | Msa0449370:CDS |
| GGAGGACCTTTCTCAGTTTG+TGG | 0.384548 | 3_3:-32523470 | None:intergenic |
| ATTTGTTTGCTATTGAAAAC+AGG | 0.387510 | 3_3:-32525118 | None:intergenic |
| CCCTCAACACTTTCATTCAA+TGG | 0.391935 | 3_3:+32525521 | Msa0449370:CDS |
| GTCATTTCATCATCAGTAAA+CGG | 0.397695 | 3_3:-32526928 | None:intergenic |
| ACATTGAAAAGTTGATGTTA+AGG | 0.398182 | 3_3:+32525720 | Msa0449370:CDS |
| GTCCATTGATCGAAGTCAAT+CGG | 0.398422 | 3_3:-32523590 | None:intergenic |
| CATATAATTCACACTCTTCT+GGG | 0.400238 | 3_3:-32525330 | None:intergenic |
| CAGATCTTACTAAGGAGATC+AGG | 0.404791 | 3_3:+32525155 | Msa0449370:CDS |
| CGAACACGTCTAGGGTGTTC+AGG | 0.424627 | 3_3:-32525025 | None:intergenic |
| AACCTTTGTCACCTCATTTG+TGG | 0.428815 | 3_3:-32525491 | None:intergenic |
| ACGTCATGAGAAGTGGATAA+AGG | 0.436038 | 3_3:+32524306 | Msa0449370:CDS |
| GTCCAACAAACCAGAAAGTA+AGG | 0.443460 | 3_3:-32524042 | None:intergenic |
| GCTATCCTCGAACATCTTTG+CGG | 0.444082 | 3_3:-32526216 | None:intergenic |
| AACACACTCGTGAGTGCATC+AGG | 0.445829 | 3_3:+32523359 | Msa0449370:CDS |
| AACACACTCGTGAGTGCATC+AGG | 0.445829 | 3_3:+32523443 | Msa0449370:CDS |
| TTGAGTGACAAATCTCCTCT+TGG | 0.450159 | 3_3:+32523961 | Msa0449370:CDS |
| GCATCAGGTCCTCCACAATC+AGG | 0.451852 | 3_3:+32523374 | Msa0449370:CDS |
| TGAGAATTCTTATCGCTTTG+TGG | 0.453509 | 3_3:-32523101 | None:intergenic |
| TGAGCGTTCATCTCTCTTTG+TGG | 0.456664 | 3_3:-32523317 | None:intergenic |
| TTTCAAAATTGAAAGACAAA+TGG | 0.462506 | 3_3:+32523866 | Msa0449370:CDS |
| CTTGCAGGTATATCGGTACT+AGG | 0.462675 | 3_3:-32525250 | None:intergenic |
| ATATGCAAATGTATATAAGT+TGG | 0.463537 | 3_3:+32525378 | Msa0449370:CDS |
| CTATATAACACAGGAACAAT+GGG | 0.465835 | 3_3:+32523822 | Msa0449370:intron |
| CTTTCCAATGTAGTCGCCAT+TGG | 0.471523 | 3_3:+32526357 | Msa0449370:intron |
| TATGCAAATGTATATAAGTT+GGG | 0.472118 | 3_3:+32525379 | Msa0449370:CDS |
| GCTCCATAATATCTCTTGTT+GGG | 0.472661 | 3_3:-32525802 | None:intergenic |
| CAAGATCTGGGAAGATATCA+TGG | 0.475188 | 3_3:+32523730 | Msa0449370:CDS |
| CGTGCTGTGGGTGGAGGTGT+GGG | 0.475834 | 3_3:+32525046 | Msa0449370:CDS |
| TCGTGCTGTGGGTGGAGGTG+TGG | 0.477255 | 3_3:+32525045 | Msa0449370:CDS |
| ACAAGGACGTAAAGATATCT+TGG | 0.478352 | 3_3:+32524985 | Msa0449370:CDS |
| GAACGCCTCTGTACTCAATT+GGG | 0.481117 | 3_3:+32526113 | Msa0449370:CDS |
| TCCCGATTGACTTCGATCAA+TGG | 0.481216 | 3_3:+32523588 | Msa0449370:CDS |
| TCATCATTATCCTCTGGTAT+AGG | 0.483406 | 3_3:-32525301 | None:intergenic |
| ATAAGCAGCCTACCAATAAG+AGG | 0.483898 | 3_3:+32523261 | Msa0449370:CDS |
| AAGAGGGTGAATAGAGTCAT+TGG | 0.484806 | 3_3:+32523278 | Msa0449370:CDS |
| CTATTCACCCTCTTATTGGT+AGG | 0.485345 | 3_3:-32523269 | None:intergenic |
| GTCAGAAGAAACACATTGTA+TGG | 0.486787 | 3_3:+32524357 | Msa0449370:CDS |
| CCTATGCGTGTGAACGTTGG+AGG | 0.488622 | 3_3:+32523893 | Msa0449370:CDS |
| TTATTCTTCTCTTTGTGTTG+AGG | 0.490705 | 3_3:-32523242 | None:intergenic |
| CGGTACTAGGAGAACATGTT+GGG | 0.495155 | 3_3:-32525237 | None:intergenic |
| CCTCTAACTCTCTTTCTGGT+AGG | 0.501052 | 3_3:-32523515 | None:intergenic |
| AACATATAAATTTATTGATG+CGG | 0.502252 | 3_3:+32523984 | Msa0449370:CDS |
| TCCATTGATCGAAGTCAATC+GGG | 0.502439 | 3_3:-32523589 | None:intergenic |
| ATGTCCTCATCATTATCCTC+TGG | 0.503062 | 3_3:-32525307 | None:intergenic |
| GATATACCTGCAAGCACAAA+AGG | 0.504357 | 3_3:+32525259 | Msa0449370:CDS |
| TCACCTCATTTGTGGGCATG+GGG | 0.505139 | 3_3:-32525483 | None:intergenic |
| TGGTGTCAGAAAGGCGAGAA+AGG | 0.505190 | 3_3:+32526588 | Msa0449370:CDS |
| AGCTCCATAATATCTCTTGT+TGG | 0.508698 | 3_3:-32525803 | None:intergenic |
| CGTGTTCGTGCTGTGGGTGG+AGG | 0.510212 | 3_3:+32525040 | Msa0449370:CDS |
| GATATCTTGGCGGAAGCGAT+CGG | 0.514136 | 3_3:+32524998 | Msa0449370:CDS |
| AAGGCACGACAAAAGTCATC+AGG | 0.514998 | 3_3:+32524325 | Msa0449370:CDS |
| ATTATTGTAGTGCTATAGAA+GGG | 0.515001 | 3_3:+32526551 | Msa0449370:intron |
| TCGGTACTAGGAGAACATGT+TGG | 0.515851 | 3_3:-32525238 | None:intergenic |
| TGAGCGTTCATCTCAGTTTG+TGG | 0.515910 | 3_3:-32523401 | None:intergenic |
| TCATCCAAATCGAACTTCAC+AGG | 0.517008 | 3_3:-32525761 | None:intergenic |
| AAGATGATCTTCCATCCAAA+AGG | 0.520107 | 3_3:+32525678 | Msa0449370:CDS |
| CCTCACGATTCTACGAATAT+GGG | 0.520232 | 3_3:+32525850 | Msa0449370:CDS |
| ATTCTCAGCCTGCCGAAAAG+AGG | 0.521645 | 3_3:+32523117 | Msa0449370:CDS |
| TATTGATGCGGAAACATGGC+AGG | 0.523083 | 3_3:+32523996 | Msa0449370:CDS |
| AAGAGGGTGAGCAAAGTCAT+TGG | 0.523725 | 3_3:+32523206 | Msa0449370:CDS |
| CAGCTGGCATTACCGACTCA+TGG | 0.524513 | 3_3:+32526786 | Msa0449370:CDS |
| GTTTGTGGAGGACCTGATTG+TGG | 0.525071 | 3_3:-32523386 | None:intergenic |
| ACTGACTTTGCTTCTAGCAA+TGG | 0.525241 | 3_3:-32523663 | None:intergenic |
| AACAGCTGATTATGTATGGT+TGG | 0.526059 | 3_3:-32525403 | None:intergenic |
| TATGACCGCAAAGATGTTCG+AGG | 0.528313 | 3_3:+32526211 | Msa0449370:CDS |
| ATTGAAAACAGGTGAGGAAG+AGG | 0.530801 | 3_3:-32525107 | None:intergenic |
| GCATTCTTCTCGCTTTGTTG+AGG | 0.531057 | 3_3:-32523170 | None:intergenic |
| ATGTTGAACATTGTATCAGC+TGG | 0.531321 | 3_3:+32526770 | Msa0449370:CDS |
| GCTATATAACACAGGAACAA+TGG | 0.531580 | 3_3:+32523821 | Msa0449370:intron |
| CACCAAAACGTCATGAGAAG+TGG | 0.531938 | 3_3:+32524299 | Msa0449370:CDS |
| CCCACAGCACGAACACGTCT+AGG | 0.533617 | 3_3:-32525034 | None:intergenic |
| CATGAAAGCAGATCTTACTA+AGG | 0.535133 | 3_3:+32525147 | Msa0449370:CDS |
| CCCTAGACGTGTTCGTGCTG+TGG | 0.537806 | 3_3:+32525033 | Msa0449370:CDS |
| GGTCCTCCACAAACTGAGAA+AGG | 0.538285 | 3_3:+32523464 | Msa0449370:CDS |
| CAAGTTGAGTGGTGTCAGAA+AGG | 0.541303 | 3_3:+32526579 | Msa0449370:CDS |
| AGCTGGCATTACCGACTCAT+GGG | 0.542371 | 3_3:+32526787 | Msa0449370:CDS |
| TTCTCAGCCTGCCGAAAAGA+GGG | 0.546627 | 3_3:+32523118 | Msa0449370:CDS |
| CCATTGAATGAAAGTGTTGA+GGG | 0.546713 | 3_3:-32525521 | None:intergenic |
| TTGGGAAATAGTGATGTGTA+TGG | 0.549222 | 3_3:+32526131 | Msa0449370:CDS |
| AGTCCCCATGCCCACAAATG+AGG | 0.553131 | 3_3:+32525480 | Msa0449370:CDS |
| TAGCCACACTCATAATTGAA+TGG | 0.554005 | 3_3:-32526731 | None:intergenic |
| GATCAGGGATCAAGTGATGC+GGG | 0.557898 | 3_3:+32525171 | Msa0449370:CDS |
| GGACCTTTCTCAGTTTGTGG+AGG | 0.560528 | 3_3:-32523467 | None:intergenic |
| ACAAAGAGAGATGAACGCTC+AGG | 0.560778 | 3_3:+32523319 | Msa0449370:CDS |
| GCTTCCAACCCATCGAACAT+AGG | 0.561020 | 3_3:-32526421 | None:intergenic |
| ACAAATGAGGTGACAAAGGT+TGG | 0.562104 | 3_3:+32525493 | Msa0449370:CDS |
| TAACAGGAGAAAAGAAATAG+GGG | 0.567601 | 3_3:+32524133 | Msa0449370:intron |
| AGTTAGAGGTGCAACGCGAA+TGG | 0.572960 | 3_3:+32523529 | Msa0449370:CDS |
| GAGGCACCATAATGAGAAAG+TGG | 0.573619 | 3_3:-32525088 | None:intergenic |
| GGGAAATGTTGAGAGAAAGC+CGG | 0.574648 | 3_3:-32525208 | None:intergenic |
| TGCCCTCACAACTTGTCTCG+TGG | 0.576996 | 3_3:+32524181 | Msa0449370:CDS |
| AGATCTTACTAAGGAGATCA+GGG | 0.579172 | 3_3:+32525156 | Msa0449370:CDS |
| GCCATTGAATGAAAGTGTTG+AGG | 0.582439 | 3_3:-32525522 | None:intergenic |
| AATTTATTGATGCGGAAACA+TGG | 0.585376 | 3_3:+32523992 | Msa0449370:CDS |
| AAGATATCTTTACGTCCTTG+TGG | 0.594684 | 3_3:-32524983 | None:intergenic |
| CAAGGACTCTTTGTTCCACA+AGG | 0.595486 | 3_3:+32524968 | Msa0449370:CDS |
| TCAGCTGTTAGAAAATGGTA+TGG | 0.595575 | 3_3:+32525417 | Msa0449370:CDS |
| CCTAGACGTGTTCGTGCTGT+GGG | 0.597436 | 3_3:+32525034 | Msa0449370:CDS |
| GCGTTCATCTCTCTTTGTGG+AGG | 0.600681 | 3_3:-32523314 | None:intergenic |
| GGCAGGAGTTTATTAAGACG+CGG | 0.602815 | 3_3:+32524013 | Msa0449370:CDS |
| AGACGTGTTCGTGCTGTGGG+TGG | 0.602986 | 3_3:+32525037 | Msa0449370:CDS |
| CCACAGCACGAACACGTCTA+GGG | 0.605762 | 3_3:-32525033 | None:intergenic |
| GCAGGAGTTTATTAAGACGC+GGG | 0.605793 | 3_3:+32524014 | Msa0449370:CDS |
| CAATAATAAGCAATTGCCAA+TGG | 0.608219 | 3_3:-32526373 | None:intergenic |
| CTATGCGTGTGAACGTTGGA+GGG | 0.609237 | 3_3:+32523894 | Msa0449370:CDS |
| CTCCACGAGACAAGTTGTGA+GGG | 0.615575 | 3_3:-32524183 | None:intergenic |
| GCCCACAAATGAGGTGACAA+AGG | 0.615741 | 3_3:+32525489 | Msa0449370:CDS |
| CCTCCAACGTTCACACGCAT+AGG | 0.617116 | 3_3:-32523893 | None:intergenic |
| CAACCATTCAATTATGAGTG+TGG | 0.617184 | 3_3:+32526728 | Msa0449370:CDS |
| CATTTAAAACAAACCTGACA+AGG | 0.619779 | 3_3:+32523917 | Msa0449370:CDS |
| AGAAAATGGTATGGTGAGGG+TGG | 0.621632 | 3_3:+32525426 | Msa0449370:CDS |
| GAATTCTTATCGCTTTGTGG+AGG | 0.627614 | 3_3:-32523098 | None:intergenic |
| GCGTTCATCTCAGTTTGTGG+AGG | 0.628888 | 3_3:-32523398 | None:intergenic |
| ATAAATTTATATGTTCCAAG+AGG | 0.629667 | 3_3:-32523976 | None:intergenic |
| TTTGCTATTGAAAACAGGTG+AGG | 0.632953 | 3_3:-32525113 | None:intergenic |
| CACGATTCTACGAATATGGG+TGG | 0.637016 | 3_3:+32525853 | Msa0449370:CDS |
| GAAGGGTATAACAAGTTGAG+TGG | 0.638120 | 3_3:+32526568 | Msa0449370:CDS |
| AGATCAGGGATCAAGTGATG+CGG | 0.639256 | 3_3:+32525170 | Msa0449370:CDS |
| CCATAATATCTCTTGTTGGG+AGG | 0.644455 | 3_3:-32525799 | None:intergenic |
| GAAAGGCGAGAAAGGCAACA+TGG | 0.644876 | 3_3:+32526596 | Msa0449370:CDS |
| TCATTATCCTCTGGTATAGG+CGG | 0.645594 | 3_3:-32525298 | None:intergenic |
| TGCAGCACCGCCTATACCAG+AGG | 0.649752 | 3_3:+32525291 | Msa0449370:CDS |
| TAAGCAGCCTACCAATAAGA+GGG | 0.651339 | 3_3:+32523262 | Msa0449370:CDS |
| GGAGTTTATTAAGACGCGGG+AGG | 0.664322 | 3_3:+32524017 | Msa0449370:CDS |
| AACAGGAGAAAAGAAATAGG+GGG | 0.665524 | 3_3:+32524134 | Msa0449370:intron |
| ACGCACCATATCCCATGAGT+CGG | 0.668234 | 3_3:-32526798 | None:intergenic |
| TATCCTATGCGTGTGAACGT+TGG | 0.669950 | 3_3:+32523890 | Msa0449370:CDS |
| CCTCCACGAGACAAGTTGTG+AGG | 0.669963 | 3_3:-32524184 | None:intergenic |
| CCCATATTCGTAGAATCGTG+AGG | 0.675861 | 3_3:-32525850 | None:intergenic |
| GTTAGAAAATGGTATGGTGA+GGG | 0.676123 | 3_3:+32525423 | Msa0449370:CDS |
| AGGACGTAAAGATATCTTGG+CGG | 0.678116 | 3_3:+32524988 | Msa0449370:CDS |
| CCTCACAACTTGTCTCGTGG+AGG | 0.679685 | 3_3:+32524184 | Msa0449370:CDS |
| TATACCAGAGGATAATGATG+AGG | 0.687519 | 3_3:+32525303 | Msa0449370:CDS |
| TATTTCCCAATTGAGTACAG+AGG | 0.690904 | 3_3:-32526118 | None:intergenic |
| TGTTAGAAAATGGTATGGTG+AGG | 0.703544 | 3_3:+32525422 | Msa0449370:CDS |
| TGTGGAGGACCTGATTGTGG+AGG | 0.704125 | 3_3:-32523383 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATCTTAAATTGTTT+AGG | + | chr3_3:32525637-32525656 | Msa0449370:intron | 10.0% |
| !!! | GAATTGTTTTTTAATATTTT+AGG | + | chr3_3:32526084-32526103 | Msa0449370:intron | 10.0% |
| !!! | TTTTTAATATTTTAGGTATA+TGG | + | chr3_3:32526091-32526110 | Msa0449370:intron | 10.0% |
| !! | AACATATAAATTTATTGATG+CGG | + | chr3_3:32523984-32524003 | Msa0449370:CDS | 15.0% |
| !!! | CATTTTACTTACAATTTTAT+CGG | - | chr3_3:32524383-32524402 | None:intergenic | 15.0% |
| !! | GTTAGATTATTAATTGAATT+TGG | + | chr3_3:32524454-32524473 | Msa0449370:intron | 15.0% |
| !!! | AATTAAGTTTGTTAATTGAA+TGG | + | chr3_3:32524535-32524554 | Msa0449370:intron | 15.0% |
| !! | ATTAGTCAACATAATTAAAT+GGG | - | chr3_3:32525618-32525637 | None:intergenic | 15.0% |
| !! | TATTAGTCAACATAATTAAA+TGG | - | chr3_3:32525619-32525638 | None:intergenic | 15.0% |
| !!! | AAAAAGATTTGTTAACTTTA+GGG | - | chr3_3:32526334-32526353 | None:intergenic | 15.0% |
| !!! | AAAAAAGATTTGTTAACTTT+AGG | - | chr3_3:32526335-32526354 | None:intergenic | 15.0% |
| !! | AGTATATATATTTAACTAAG+TGG | + | chr3_3:32526478-32526497 | Msa0449370:intron | 15.0% |
| !!! | TATAATTTTTAACTTACTGT+GGG | - | chr3_3:32526628-32526647 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTAACTTACTG+TGG | - | chr3_3:32526629-32526648 | None:intergenic | 15.0% |
| !! | AAAAAAATTCAAAAGTCATG+TGG | + | chr3_3:32523637-32523656 | Msa0449370:CDS | 20.0% |
| !! | AAAAAATTCAAAAGTCATGT+GGG | + | chr3_3:32523638-32523657 | Msa0449370:CDS | 20.0% |
| !! | TTTCAAAATTGAAAGACAAA+TGG | + | chr3_3:32523866-32523885 | Msa0449370:CDS | 20.0% |
| !! | ACAAGGAGATATTTAAATAA+TGG | + | chr3_3:32523934-32523953 | Msa0449370:CDS | 20.0% |
| !! | CAAGGAGATATTTAAATAAT+GGG | + | chr3_3:32523935-32523954 | Msa0449370:CDS | 20.0% |
| !! | ATAAATTTATATGTTCCAAG+AGG | - | chr3_3:32523979-32523998 | None:intergenic | 20.0% |
| !! | AAATAACACACAACAATTAA+CGG | - | chr3_3:32524112-32524131 | None:intergenic | 20.0% |
| !!! | AGACTATAAAATTTGAAACA+TGG | + | chr3_3:32524432-32524451 | Msa0449370:intron | 20.0% |
| !! | GTTAGATAGTTAATTGAATT+TGG | + | chr3_3:32524476-32524495 | Msa0449370:intron | 20.0% |
| !! | CTAGTAATTTACTTATTTAC+AGG | - | chr3_3:32524626-32524645 | None:intergenic | 20.0% |
| !!! | TTGAATATTTTTATGTTGGT+AGG | + | chr3_3:32524922-32524941 | Msa0449370:intron | 20.0% |
| !! | ATATGCAAATGTATATAAGT+TGG | + | chr3_3:32525378-32525397 | Msa0449370:CDS | 20.0% |
| !! | TATGCAAATGTATATAAGTT+GGG | + | chr3_3:32525379-32525398 | Msa0449370:CDS | 20.0% |
| !!! | TTTTCAATGTAAGATTTTTC+AGG | - | chr3_3:32525710-32525729 | None:intergenic | 20.0% |
| !! | AAACATTAAGAAACTCAAAT+GGG | - | chr3_3:32526838-32526857 | None:intergenic | 20.0% |
| !! | AAAACATTAAGAAACTCAAA+TGG | - | chr3_3:32526839-32526858 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTTTCCAGATTTT+TGG | + | chr3_3:32526895-32526914 | Msa0449370:intron | 20.0% |
| !! | TTTTTGCTTAAACGTTTGAA+TGG | + | chr3_3:32523557-32523576 | Msa0449370:CDS | 25.0% |
| !!! | TTTTTTTTGTTTTCGCCTAA+AGG | - | chr3_3:32523623-32523642 | None:intergenic | 25.0% |
| ! | AGAATGTTAAAAACAAGATC+TGG | + | chr3_3:32523717-32523736 | Msa0449370:CDS | 25.0% |
| ! | GAATGTTAAAAACAAGATCT+GGG | + | chr3_3:32523718-32523737 | Msa0449370:CDS | 25.0% |
| !! | TTTTATCTGCTATATAACAC+AGG | + | chr3_3:32523813-32523832 | Msa0449370:intron | 25.0% |
| !! | TTTGAAATATCATGAGTATC+AGG | - | chr3_3:32523853-32523872 | None:intergenic | 25.0% |
| ! | TATTTAAATATCTCCTTGTC+AGG | - | chr3_3:32523933-32523952 | None:intergenic | 25.0% |
| !!! | TGTTGTGTGTTATTTATAAC+AGG | + | chr3_3:32524117-32524136 | Msa0449370:intron | 25.0% |
| ! | TATAACAGGAGAAAAGAAAT+AGG | + | chr3_3:32524131-32524150 | Msa0449370:intron | 25.0% |
| ! | ATAACAGGAGAAAAGAAATA+GGG | + | chr3_3:32524132-32524151 | Msa0449370:intron | 25.0% |
| ! | ACATTAGAAACAATGTTGTA+TGG | + | chr3_3:32524734-32524753 | Msa0449370:intron | 25.0% |
| ! | GTTTCTATATTATGGTTCTT+TGG | + | chr3_3:32524811-32524830 | Msa0449370:intron | 25.0% |
| ! | CAACATAAAAATATTCAAGC+AGG | - | chr3_3:32524920-32524939 | None:intergenic | 25.0% |
| !!! | CTGCTTGAATATTTTTATGT+TGG | + | chr3_3:32524918-32524937 | Msa0449370:intron | 25.0% |
| ! | GTTGTTGAAAAAACAAAACA+AGG | + | chr3_3:32524950-32524969 | Msa0449370:CDS | 25.0% |
| !!! | ATTTGTTTGCTATTGAAAAC+AGG | - | chr3_3:32525121-32525140 | None:intergenic | 25.0% |
| !!! | ACATTGAAAAGTTGATGTTA+AGG | + | chr3_3:32525720-32525739 | Msa0449370:CDS | 25.0% |
| !!! | CATTGAAAAGTTGATGTTAA+GGG | + | chr3_3:32525721-32525740 | Msa0449370:CDS | 25.0% |
| !! | TACACACTAACTTTTCATAT+AGG | - | chr3_3:32525967-32525986 | None:intergenic | 25.0% |
| ! | TCAAAATTTGAACATGTACA+AGG | - | chr3_3:32526066-32526085 | None:intergenic | 25.0% |
| !!! | TCAAATACACTTACTTTTTC+AGG | - | chr3_3:32526265-32526284 | None:intergenic | 25.0% |
| !!! | AAAACGACATTTTGTTTTTC+TGG | - | chr3_3:32526401-32526420 | None:intergenic | 25.0% |
| !! | ATTTGCACAAGATTTTTATC+TGG | - | chr3_3:32526446-32526465 | None:intergenic | 25.0% |
| ! | TATTATTGTAGTGCTATAGA+AGG | + | chr3_3:32526550-32526569 | Msa0449370:intron | 25.0% |
| ! | ATTATTGTAGTGCTATAGAA+GGG | + | chr3_3:32526551-32526570 | Msa0449370:intron | 25.0% |
| TTATTCTTCTCTTTGTGTTG+AGG | - | chr3_3:32523245-32523264 | None:intergenic | 30.0% | |
| ! | TGAGTAATTTTCTCAGTTTG+TGG | - | chr3_3:32523494-32523513 | None:intergenic | 30.0% |
| ! | TAGAAGCAAAGTCAGTATTT+TGG | + | chr3_3:32523670-32523689 | Msa0449370:CDS | 30.0% |
| CAGATAAAAGAGTTAGTGTA+TGG | - | chr3_3:32523802-32523821 | None:intergenic | 30.0% | |
| CTATATAACACAGGAACAAT+GGG | + | chr3_3:32523822-32523841 | Msa0449370:intron | 30.0% | |
| ! | CATTTAAAACAAACCTGACA+AGG | + | chr3_3:32523917-32523936 | Msa0449370:CDS | 30.0% |
| AATTTATTGATGCGGAAACA+TGG | + | chr3_3:32523992-32524011 | Msa0449370:CDS | 30.0% | |
| TAACAGGAGAAAAGAAATAG+GGG | + | chr3_3:32524133-32524152 | Msa0449370:intron | 30.0% | |
| !! | CTACAATACAAAAGCATTCA+TGG | - | chr3_3:32524572-32524591 | None:intergenic | 30.0% |
| TACTTAATTAAAGCCACTGA+TGG | + | chr3_3:32524650-32524669 | Msa0449370:intron | 30.0% | |
| CTATGTGTAAGTTCAATACT+GGG | - | chr3_3:32524769-32524788 | None:intergenic | 30.0% | |
| ACTATGTGTAAGTTCAATAC+TGG | - | chr3_3:32524770-32524789 | None:intergenic | 30.0% | |
| !! | AAGCCACTGTTTCTATATTA+TGG | + | chr3_3:32524803-32524822 | Msa0449370:intron | 30.0% |
| GAACCATAATATAGAAACAG+TGG | - | chr3_3:32524809-32524828 | None:intergenic | 30.0% | |
| CATATAATTCACACTCTTCT+GGG | - | chr3_3:32525333-32525352 | None:intergenic | 30.0% | |
| ACATATAATTCACACTCTTC+TGG | - | chr3_3:32525334-32525353 | None:intergenic | 30.0% | |
| TTCTAACAGCTGATTATGTA+TGG | - | chr3_3:32525410-32525429 | None:intergenic | 30.0% | |
| CATAATCAGCTGTTAGAAAA+TGG | + | chr3_3:32525412-32525431 | Msa0449370:CDS | 30.0% | |
| ! | TCTGTGTCTAGTTTCTAATA+AGG | + | chr3_3:32525555-32525574 | Msa0449370:CDS | 30.0% |
| TGTCTTTATCTATTTGCACT+TGG | + | chr3_3:32525591-32525610 | Msa0449370:intron | 30.0% | |
| GTCTTTATCTATTTGCACTT+GGG | + | chr3_3:32525592-32525611 | Msa0449370:intron | 30.0% | |
| ! | TTAATTTAAAGCACAGACAG+AGG | - | chr3_3:32525907-32525926 | None:intergenic | 30.0% |
| CATTCTGAATTGTTTATAGC+AGG | + | chr3_3:32525991-32526010 | Msa0449370:intron | 30.0% | |
| !!! | TACACTTACTTTTTCAGGTA+AGG | - | chr3_3:32526260-32526279 | None:intergenic | 30.0% |
| CAATAATAAGCAATTGCCAA+TGG | - | chr3_3:32526376-32526395 | None:intergenic | 30.0% | |
| GTCATTTCATCATCAGTAAA+CGG | - | chr3_3:32526931-32526950 | None:intergenic | 30.0% | |
| TGAGAATTCTTATCGCTTTG+TGG | - | chr3_3:32523104-32523123 | None:intergenic | 35.0% | |
| ! | TTGTCTATTCACCCTCTTTT+CGG | - | chr3_3:32523132-32523151 | None:intergenic | 35.0% |
| AAGAGGGTGAATAGACAAAT+TGG | + | chr3_3:32523134-32523153 | Msa0449370:CDS | 35.0% | |
| !!! | GAGTGTGTTGACTCTATTTT+CGG | - | chr3_3:32523348-32523367 | None:intergenic | 35.0% |
| !!! | GAGTGTGTTGACTCTATTTT+CGG | - | chr3_3:32523348-32523367 | None:intergenic | 35.0% |
| ! | GTAATTTTCTCAGTTTGTGG+AGG | - | chr3_3:32523491-32523510 | None:intergenic | 35.0% |
| !! | AAGCAAAGTCAGTATTTTGG+TGG | + | chr3_3:32523673-32523692 | Msa0449370:CDS | 35.0% |
| !!! | TCAGTATTTTGGTGGATCAT+TGG | + | chr3_3:32523681-32523700 | Msa0449370:CDS | 35.0% |
| !!! | CAGTATTTTGGTGGATCATT+GGG | + | chr3_3:32523682-32523701 | Msa0449370:CDS | 35.0% |
| GCTATATAACACAGGAACAA+TGG | + | chr3_3:32523821-32523840 | Msa0449370:intron | 35.0% | |
| !! | ATCCTTACTTTCTGGTTTGT+TGG | + | chr3_3:32524040-32524059 | Msa0449370:intron | 35.0% |
| AACAGGAGAAAAGAAATAGG+GGG | + | chr3_3:32524134-32524153 | Msa0449370:intron | 35.0% | |
| ! | AAATAGGGGGAAATTGATTC+AGG | + | chr3_3:32524147-32524166 | Msa0449370:CDS | 35.0% |
| GTCAGAAGAAACACATTGTA+TGG | + | chr3_3:32524357-32524376 | Msa0449370:CDS | 35.0% | |
| AGTTCAATACTGGGATTGAT+TGG | - | chr3_3:32524760-32524779 | None:intergenic | 35.0% | |
| AAGATATCTTTACGTCCTTG+TGG | - | chr3_3:32524986-32525005 | None:intergenic | 35.0% | |
| ACAAGGACGTAAAGATATCT+TGG | + | chr3_3:32524985-32525004 | Msa0449370:CDS | 35.0% | |
| ! | GTGGGAATTAGGCAATATTT+TGG | + | chr3_3:32525064-32525083 | Msa0449370:CDS | 35.0% |
| TTTGGTCCACTTTCTCATTA+TGG | + | chr3_3:32525082-32525101 | Msa0449370:CDS | 35.0% | |
| !! | TTTGCTATTGAAAACAGGTG+AGG | - | chr3_3:32525116-32525135 | None:intergenic | 35.0% |
| CATGAAAGCAGATCTTACTA+AGG | + | chr3_3:32525147-32525166 | Msa0449370:CDS | 35.0% | |
| AGATCTTACTAAGGAGATCA+GGG | + | chr3_3:32525156-32525175 | Msa0449370:CDS | 35.0% | |
| GAGAACATGTTGGGAAATTT+GGG | - | chr3_3:32525231-32525250 | None:intergenic | 35.0% | |
| ! | TTTTGTGCTTGCAGGTATAT+CGG | - | chr3_3:32525260-32525279 | None:intergenic | 35.0% |
| TCATCATTATCCTCTGGTAT+AGG | - | chr3_3:32525304-32525323 | None:intergenic | 35.0% | |
| TATACCAGAGGATAATGATG+AGG | + | chr3_3:32525303-32525322 | Msa0449370:CDS | 35.0% | |
| AACAGCTGATTATGTATGGT+TGG | - | chr3_3:32525406-32525425 | None:intergenic | 35.0% | |
| TCAGCTGTTAGAAAATGGTA+TGG | + | chr3_3:32525417-32525436 | Msa0449370:CDS | 35.0% | |
| TGTTAGAAAATGGTATGGTG+AGG | + | chr3_3:32525422-32525441 | Msa0449370:CDS | 35.0% | |
| GTTAGAAAATGGTATGGTGA+GGG | + | chr3_3:32525423-32525442 | Msa0449370:CDS | 35.0% | |
| !! | CCATTGAATGAAAGTGTTGA+GGG | - | chr3_3:32525524-32525543 | None:intergenic | 35.0% |
| ! | ACTAGACACAGAAGTCTTTT+TGG | - | chr3_3:32525547-32525566 | None:intergenic | 35.0% |
| AAGATGATCTTCCATCCAAA+AGG | + | chr3_3:32525678-32525697 | Msa0449370:CDS | 35.0% | |
| !!! | TTTTTCAGGTTCTGACCTTT+TGG | - | chr3_3:32525696-32525715 | None:intergenic | 35.0% |
| GCTCCATAATATCTCTTGTT+GGG | - | chr3_3:32525805-32525824 | None:intergenic | 35.0% | |
| AGCTCCATAATATCTCTTGT+TGG | - | chr3_3:32525806-32525825 | None:intergenic | 35.0% | |
| ! | ACAGACAGAGGCATAAATAA+GGG | - | chr3_3:32525895-32525914 | None:intergenic | 35.0% |
| CAACAAACAAACAAACAGCA+AGG | - | chr3_3:32526043-32526062 | None:intergenic | 35.0% | |
| TATTTCCCAATTGAGTACAG+AGG | - | chr3_3:32526121-32526140 | None:intergenic | 35.0% | |
| TTGGGAAATAGTGATGTGTA+TGG | + | chr3_3:32526131-32526150 | Msa0449370:CDS | 35.0% | |
| !! | TGATCCATTTTTCATTCACG+CGG | + | chr3_3:32526160-32526179 | Msa0449370:CDS | 35.0% |
| ! | TTTTCCGCGTGAATGAAAAA+TGG | - | chr3_3:32526167-32526186 | None:intergenic | 35.0% |
| CAACCATTCAATTATGAGTG+TGG | + | chr3_3:32526728-32526747 | Msa0449370:CDS | 35.0% | |
| TAGCCACACTCATAATTGAA+TGG | - | chr3_3:32526734-32526753 | None:intergenic | 35.0% | |
| ATGTTGAACATTGTATCAGC+TGG | + | chr3_3:32526770-32526789 | Msa0449370:CDS | 35.0% | |
| GAATTCTTATCGCTTTGTGG+AGG | - | chr3_3:32523101-32523120 | None:intergenic | 40.0% | |
| ATAAGCAGCCTACCAATAAG+AGG | + | chr3_3:32523261-32523280 | Msa0449370:CDS | 40.0% | |
| TAAGCAGCCTACCAATAAGA+GGG | + | chr3_3:32523262-32523281 | Msa0449370:CDS | 40.0% | |
| CTATTCACCCTCTTATTGGT+AGG | - | chr3_3:32523272-32523291 | None:intergenic | 40.0% | |
| GACTCTATTCACCCTCTTAT+TGG | - | chr3_3:32523276-32523295 | None:intergenic | 40.0% | |
| AAGAGGGTGAATAGAGTCAT+TGG | + | chr3_3:32523278-32523297 | Msa0449370:CDS | 40.0% | |
| !!! | GTGTTGACTCTATTTTCGGT+AGG | - | chr3_3:32523344-32523363 | None:intergenic | 40.0% |
| TCCATTGATCGAAGTCAATC+GGG | - | chr3_3:32523592-32523611 | None:intergenic | 40.0% | |
| GTCCATTGATCGAAGTCAAT+CGG | - | chr3_3:32523593-32523612 | None:intergenic | 40.0% | |
| CAATGGACCAAAAAGCCTTT+AGG | + | chr3_3:32523605-32523624 | Msa0449370:CDS | 40.0% | |
| ! | GTTTTCGCCTAAAGGCTTTT+TGG | - | chr3_3:32523615-32523634 | None:intergenic | 40.0% |
| ! | ACTGACTTTGCTTCTAGCAA+TGG | - | chr3_3:32523666-32523685 | None:intergenic | 40.0% |
| CAAGATCTGGGAAGATATCA+TGG | + | chr3_3:32523730-32523749 | Msa0449370:CDS | 40.0% | |
| TTGAGTGACAAATCTCCTCT+TGG | + | chr3_3:32523961-32523980 | Msa0449370:CDS | 40.0% | |
| GTCCAACAAACCAGAAAGTA+AGG | - | chr3_3:32524045-32524064 | None:intergenic | 40.0% | |
| !! | ACTTCTCATGACGTTTTGGT+GGG | - | chr3_3:32524300-32524319 | None:intergenic | 40.0% |
| ! | ATCCACTTCTCATGACGTTT+TGG | - | chr3_3:32524304-32524323 | None:intergenic | 40.0% |
| ACGTCATGAGAAGTGGATAA+AGG | + | chr3_3:32524306-32524325 | Msa0449370:CDS | 40.0% | |
| AGCAGCACAAACTAAAACAG+TGG | - | chr3_3:32524867-32524886 | None:intergenic | 40.0% | |
| AGGACGTAAAGATATCTTGG+CGG | + | chr3_3:32524988-32525007 | Msa0449370:CDS | 40.0% | |
| ATTGAAAACAGGTGAGGAAG+AGG | - | chr3_3:32525110-32525129 | None:intergenic | 40.0% | |
| CAGATCTTACTAAGGAGATC+AGG | + | chr3_3:32525155-32525174 | Msa0449370:CDS | 40.0% | |
| GCGGGATTTATCATCTATTC+CGG | + | chr3_3:32525189-32525208 | Msa0449370:CDS | 40.0% | |
| GGAGAACATGTTGGGAAATT+TGG | - | chr3_3:32525232-32525251 | None:intergenic | 40.0% | |
| GATATACCTGCAAGCACAAA+AGG | + | chr3_3:32525259-32525278 | Msa0449370:CDS | 40.0% | |
| TCATTATCCTCTGGTATAGG+CGG | - | chr3_3:32525301-32525320 | None:intergenic | 40.0% | |
| ATGTCCTCATCATTATCCTC+TGG | - | chr3_3:32525310-32525329 | None:intergenic | 40.0% | |
| ACCTTTGTCACCTCATTTGT+GGG | - | chr3_3:32525493-32525512 | None:intergenic | 40.0% | |
| AACCTTTGTCACCTCATTTG+TGG | - | chr3_3:32525494-32525513 | None:intergenic | 40.0% | |
| ACAAATGAGGTGACAAAGGT+TGG | + | chr3_3:32525493-32525512 | Msa0449370:CDS | 40.0% | |
| CCCTCAACACTTTCATTCAA+TGG | + | chr3_3:32525521-32525540 | Msa0449370:CDS | 40.0% | |
| !! | GCCATTGAATGAAAGTGTTG+AGG | - | chr3_3:32525525-32525544 | None:intergenic | 40.0% |
| ACATCCTGTGAAGTTCGATT+TGG | + | chr3_3:32525757-32525776 | Msa0449370:CDS | 40.0% | |
| TCATCCAAATCGAACTTCAC+AGG | - | chr3_3:32525764-32525783 | None:intergenic | 40.0% | |
| CCATAATATCTCTTGTTGGG+AGG | - | chr3_3:32525802-32525821 | None:intergenic | 40.0% | |
| CCTCCCAACAAGAGATATTA+TGG | + | chr3_3:32525799-32525818 | Msa0449370:CDS | 40.0% | |
| CCTCACGATTCTACGAATAT+GGG | + | chr3_3:32525850-32525869 | Msa0449370:CDS | 40.0% | |
| ! | CACAGACAGAGGCATAAATA+AGG | - | chr3_3:32525896-32525915 | None:intergenic | 40.0% |
| !!! | TGTCGTTTTCCTATGTTCGA+TGG | + | chr3_3:32526412-32526431 | Msa0449370:CDS | 40.0% |
| !! | GTCGTTTTCCTATGTTCGAT+GGG | + | chr3_3:32526413-32526432 | Msa0449370:CDS | 40.0% |
| ! | TTTTCCTATGTTCGATGGGT+TGG | + | chr3_3:32526417-32526436 | Msa0449370:CDS | 40.0% |
| ! | GAAGGGTATAACAAGTTGAG+TGG | + | chr3_3:32526568-32526587 | Msa0449370:CDS | 40.0% |
| GAGTTTCGTCTCCAAAAATC+TGG | - | chr3_3:32526909-32526928 | None:intergenic | 40.0% | |
| !! | ACGCTGTGCAAGTTTGATTT+TGG | + | chr3_3:32526963-32526982 | Msa0449370:CDS | 40.0% |
| ! | GCATTCTTCTCGCTTTGTTG+AGG | - | chr3_3:32523173-32523192 | None:intergenic | 45.0% |
| ATGCTCAACCTGCCAAAAAG+AGG | + | chr3_3:32523189-32523208 | Msa0449370:CDS | 45.0% | |
| TGCTCAACCTGCCAAAAAGA+GGG | + | chr3_3:32523190-32523209 | Msa0449370:CDS | 45.0% | |
| ! | GACTTTGCTCACCCTCTTTT+TGG | - | chr3_3:32523204-32523223 | None:intergenic | 45.0% |
| AAGAGGGTGAGCAAAGTCAT+TGG | + | chr3_3:32523206-32523225 | Msa0449370:CDS | 45.0% | |
| TGAGCGTTCATCTCTCTTTG+TGG | - | chr3_3:32523320-32523339 | None:intergenic | 45.0% | |
| ACAAAGAGAGATGAACGCTC+AGG | + | chr3_3:32523319-32523338 | Msa0449370:CDS | 45.0% | |
| TGAGCGTTCATCTCAGTTTG+TGG | - | chr3_3:32523404-32523423 | None:intergenic | 45.0% | |
| ! | CCTCTAACTCTCTTTCTGGT+AGG | - | chr3_3:32523518-32523537 | None:intergenic | 45.0% |
| CCTACCAGAAAGAGAGTTAG+AGG | + | chr3_3:32523515-32523534 | Msa0449370:CDS | 45.0% | |
| TGCACCTCTAACTCTCTTTC+TGG | - | chr3_3:32523522-32523541 | None:intergenic | 45.0% | |
| ! | TCCCGATTGACTTCGATCAA+TGG | + | chr3_3:32523588-32523607 | Msa0449370:CDS | 45.0% |
| TATCCTATGCGTGTGAACGT+TGG | + | chr3_3:32523890-32523909 | Msa0449370:CDS | 45.0% | |
| TATTGATGCGGAAACATGGC+AGG | + | chr3_3:32523996-32524015 | Msa0449370:CDS | 45.0% | |
| GGCAGGAGTTTATTAAGACG+CGG | + | chr3_3:32524013-32524032 | Msa0449370:CDS | 45.0% | |
| GCAGGAGTTTATTAAGACGC+GGG | + | chr3_3:32524014-32524033 | Msa0449370:CDS | 45.0% | |
| !! | CTTCTCATGACGTTTTGGTG+GGG | - | chr3_3:32524299-32524318 | None:intergenic | 45.0% |
| ! | CACTTCTCATGACGTTTTGG+TGG | - | chr3_3:32524301-32524320 | None:intergenic | 45.0% |
| CACCAAAACGTCATGAGAAG+TGG | + | chr3_3:32524299-32524318 | Msa0449370:CDS | 45.0% | |
| AAGGCACGACAAAAGTCATC+AGG | + | chr3_3:32524325-32524344 | Msa0449370:CDS | 45.0% | |
| CAAGGACTCTTTGTTCCACA+AGG | + | chr3_3:32524968-32524987 | Msa0449370:CDS | 45.0% | |
| ! | GAGGCACCATAATGAGAAAG+TGG | - | chr3_3:32525091-32525110 | None:intergenic | 45.0% |
| AGATCAGGGATCAAGTGATG+CGG | + | chr3_3:32525170-32525189 | Msa0449370:CDS | 45.0% | |
| GGGAAATGTTGAGAGAAAGC+CGG | - | chr3_3:32525211-32525230 | None:intergenic | 45.0% | |
| CGGTACTAGGAGAACATGTT+GGG | - | chr3_3:32525240-32525259 | None:intergenic | 45.0% | |
| TCGGTACTAGGAGAACATGT+TGG | - | chr3_3:32525241-32525260 | None:intergenic | 45.0% | |
| CTTGCAGGTATATCGGTACT+AGG | - | chr3_3:32525253-32525272 | None:intergenic | 45.0% | |
| ! | CAACTACCTTTTGTGCTTGC+AGG | - | chr3_3:32525268-32525287 | None:intergenic | 45.0% |
| AGAAAATGGTATGGTGAGGG+TGG | + | chr3_3:32525426-32525445 | Msa0449370:CDS | 45.0% | |
| !! | TCAGGTTCTGACCTTTTGGA+TGG | - | chr3_3:32525692-32525711 | None:intergenic | 45.0% |
| GCCTCACGATTCTACGAATA+TGG | + | chr3_3:32525849-32525868 | Msa0449370:CDS | 45.0% | |
| CCCATATTCGTAGAATCGTG+AGG | - | chr3_3:32525853-32525872 | None:intergenic | 45.0% | |
| CACGATTCTACGAATATGGG+TGG | + | chr3_3:32525853-32525872 | Msa0449370:CDS | 45.0% | |
| GAACGCCTCTGTACTCAATT+GGG | + | chr3_3:32526113-32526132 | Msa0449370:CDS | 45.0% | |
| TATGACCGCAAAGATGTTCG+AGG | + | chr3_3:32526211-32526230 | Msa0449370:CDS | 45.0% | |
| GCTATCCTCGAACATCTTTG+CGG | - | chr3_3:32526219-32526238 | None:intergenic | 45.0% | |
| CTTTCCAATGTAGTCGCCAT+TGG | + | chr3_3:32526357-32526376 | Msa0449370:intron | 45.0% | |
| ATTGCCAATGGCGACTACAT+TGG | - | chr3_3:32526364-32526383 | None:intergenic | 45.0% | |
| ! | CAAGTTGAGTGGTGTCAGAA+AGG | + | chr3_3:32526579-32526598 | Msa0449370:CDS | 45.0% |
| !! | CATTACCGACTCATGGGATA+TGG | + | chr3_3:32526793-32526812 | Msa0449370:CDS | 45.0% |
| ATTCTCAGCCTGCCGAAAAG+AGG | + | chr3_3:32523117-32523136 | Msa0449370:CDS | 50.0% | |
| TTCTCAGCCTGCCGAAAAGA+GGG | + | chr3_3:32523118-32523137 | Msa0449370:CDS | 50.0% | |
| ! | CTATTCACCCTCTTTTCGGC+AGG | - | chr3_3:32523128-32523147 | None:intergenic | 50.0% |
| !! | TTGCTCACCCTCTTTTTGGC+AGG | - | chr3_3:32523200-32523219 | None:intergenic | 50.0% |
| GCGTTCATCTCTCTTTGTGG+AGG | - | chr3_3:32523317-32523336 | None:intergenic | 50.0% | |
| AACACACTCGTGAGTGCATC+AGG | + | chr3_3:32523359-32523378 | Msa0449370:CDS | 50.0% | |
| GTTTGTGGAGGACCTGATTG+TGG | - | chr3_3:32523389-32523408 | None:intergenic | 50.0% | |
| GCGTTCATCTCAGTTTGTGG+AGG | - | chr3_3:32523401-32523420 | None:intergenic | 50.0% | |
| AACACACTCGTGAGTGCATC+AGG | + | chr3_3:32523359-32523378 | Msa0449370:CDS | 50.0% | |
| GGTCCTCCACAAACTGAGAA+AGG | + | chr3_3:32523464-32523483 | Msa0449370:CDS | 50.0% | |
| GGACCTTTCTCAGTTTGTGG+AGG | - | chr3_3:32523470-32523489 | None:intergenic | 50.0% | |
| GGAGGACCTTTCTCAGTTTG+TGG | - | chr3_3:32523473-32523492 | None:intergenic | 50.0% | |
| ! | AGTTAGAGGTGCAACGCGAA+TGG | + | chr3_3:32523529-32523548 | Msa0449370:CDS | 50.0% |
| CTATGCGTGTGAACGTTGGA+GGG | + | chr3_3:32523894-32523913 | Msa0449370:CDS | 50.0% | |
| GGAGTTTATTAAGACGCGGG+AGG | + | chr3_3:32524017-32524036 | Msa0449370:CDS | 50.0% | |
| CTCCACGAGACAAGTTGTGA+GGG | - | chr3_3:32524186-32524205 | None:intergenic | 50.0% | |
| !! | TCATGACGTTTTGGTGGGGA+TGG | - | chr3_3:32524295-32524314 | None:intergenic | 50.0% |
| TGTGTACAGCTCACCATCAG+TGG | - | chr3_3:32524666-32524685 | None:intergenic | 50.0% | |
| GATATCTTGGCGGAAGCGAT+CGG | + | chr3_3:32524998-32525017 | Msa0449370:CDS | 50.0% | |
| GATCAGGGATCAAGTGATGC+GGG | + | chr3_3:32525171-32525190 | Msa0449370:CDS | 50.0% | |
| TCACCTCATTTGTGGGCATG+GGG | - | chr3_3:32525486-32525505 | None:intergenic | 50.0% | |
| GTCACCTCATTTGTGGGCAT+GGG | - | chr3_3:32525487-32525506 | None:intergenic | 50.0% | |
| TGTCACCTCATTTGTGGGCA+TGG | - | chr3_3:32525488-32525507 | None:intergenic | 50.0% | |
| GCCCACAAATGAGGTGACAA+AGG | + | chr3_3:32525489-32525508 | Msa0449370:CDS | 50.0% | |
| GGAACGCCTCTGTACTCAAT+TGG | + | chr3_3:32526112-32526131 | Msa0449370:CDS | 50.0% | |
| GCTTCCAACCCATCGAACAT+AGG | - | chr3_3:32526424-32526443 | None:intergenic | 50.0% | |
| ! | TGGTGTCAGAAAGGCGAGAA+AGG | + | chr3_3:32526588-32526607 | Msa0449370:CDS | 50.0% |
| GAAAGGCGAGAAAGGCAACA+TGG | + | chr3_3:32526596-32526615 | Msa0449370:CDS | 50.0% | |
| !! | AGCTGGCATTACCGACTCAT+GGG | + | chr3_3:32526787-32526806 | Msa0449370:CDS | 50.0% |
| ACGCACCATATCCCATGAGT+CGG | - | chr3_3:32526801-32526820 | None:intergenic | 50.0% | |
| GCATCAGGTCCTCCACAATC+AGG | + | chr3_3:32523374-32523393 | Msa0449370:CDS | 55.0% | |
| TGTGGAGGACCTGATTGTGG+AGG | - | chr3_3:32523386-32523405 | None:intergenic | 55.0% | |
| CCTCCAACGTTCACACGCAT+AGG | - | chr3_3:32523896-32523915 | None:intergenic | 55.0% | |
| CCTATGCGTGTGAACGTTGG+AGG | + | chr3_3:32523893-32523912 | Msa0449370:CDS | 55.0% | |
| GCGGGAGGATCCTTACTTTC+TGG | + | chr3_3:32524032-32524051 | Msa0449370:CDS | 55.0% | |
| TGCCCTCACAACTTGTCTCG+TGG | + | chr3_3:32524181-32524200 | Msa0449370:CDS | 55.0% | |
| CCTCCACGAGACAAGTTGTG+AGG | - | chr3_3:32524187-32524206 | None:intergenic | 55.0% | |
| CCTCACAACTTGTCTCGTGG+AGG | + | chr3_3:32524184-32524203 | Msa0449370:CDS | 55.0% | |
| !! | TGACGTTTTGGTGGGGATGG+AGG | - | chr3_3:32524292-32524311 | None:intergenic | 55.0% |
| ! | CGAACACGTCTAGGGTGTTC+AGG | - | chr3_3:32525028-32525047 | None:intergenic | 55.0% |
| CCACAGCACGAACACGTCTA+GGG | - | chr3_3:32525036-32525055 | None:intergenic | 55.0% | |
| CCTAGACGTGTTCGTGCTGT+GGG | + | chr3_3:32525034-32525053 | Msa0449370:CDS | 55.0% | |
| ! | TGGGTGGAGGTGTGGGAATT+AGG | + | chr3_3:32525053-32525072 | Msa0449370:CDS | 55.0% |
| AGTCCCCATGCCCACAAATG+AGG | + | chr3_3:32525480-32525499 | Msa0449370:CDS | 55.0% | |
| !! | CAGCTGGCATTACCGACTCA+TGG | + | chr3_3:32526786-32526805 | Msa0449370:CDS | 55.0% |
| CCCTAGACGTGTTCGTGCTG+TGG | + | chr3_3:32525033-32525052 | Msa0449370:CDS | 60.0% | |
| CCCACAGCACGAACACGTCT+AGG | - | chr3_3:32525037-32525056 | None:intergenic | 60.0% | |
| AGACGTGTTCGTGCTGTGGG+TGG | + | chr3_3:32525037-32525056 | Msa0449370:CDS | 60.0% | |
| TGCAGCACCGCCTATACCAG+AGG | + | chr3_3:32525291-32525310 | Msa0449370:CDS | 60.0% | |
| CGTGTTCGTGCTGTGGGTGG+AGG | + | chr3_3:32525040-32525059 | Msa0449370:CDS | 65.0% | |
| TCGTGCTGTGGGTGGAGGTG+TGG | + | chr3_3:32525045-32525064 | Msa0449370:CDS | 65.0% | |
| ! | CGTGCTGTGGGTGGAGGTGT+GGG | + | chr3_3:32525046-32525065 | Msa0449370:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 32523080 | 32527005 | 32523080 | ID=Msa0449370;Name=Msa0449370 |
| chr3_3 | mRNA | 32523080 | 32527005 | 32523080 | ID=Msa0449370-mRNA-1;Parent=Msa0449370;Name=Msa0449370-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0|0|0.6|1|1|10|0|841 |
| chr3_3 | exon | 32523080 | 32523751 | 32523080 | ID=Msa0449370-mRNA-1:exon:5906;Parent=Msa0449370-mRNA-1 |
| chr3_3 | exon | 32523835 | 32524053 | 32523835 | ID=Msa0449370-mRNA-1:exon:5907;Parent=Msa0449370-mRNA-1 |
| chr3_3 | exon | 32524139 | 32524390 | 32524139 | ID=Msa0449370-mRNA-1:exon:5908;Parent=Msa0449370-mRNA-1 |
| chr3_3 | exon | 32524944 | 32525576 | 32524944 | ID=Msa0449370-mRNA-1:exon:5909;Parent=Msa0449370-mRNA-1 |
| chr3_3 | exon | 32525659 | 32525876 | 32525659 | ID=Msa0449370-mRNA-1:exon:5910;Parent=Msa0449370-mRNA-1 |
| chr3_3 | exon | 32526106 | 32526270 | 32526106 | ID=Msa0449370-mRNA-1:exon:5911;Parent=Msa0449370-mRNA-1 |
| chr3_3 | exon | 32526370 | 32526474 | 32526370 | ID=Msa0449370-mRNA-1:exon:5912;Parent=Msa0449370-mRNA-1 |
| chr3_3 | exon | 32526561 | 32526630 | 32526561 | ID=Msa0449370-mRNA-1:exon:5913;Parent=Msa0449370-mRNA-1 |
| chr3_3 | exon | 32526719 | 32526814 | 32526719 | ID=Msa0449370-mRNA-1:exon:5914;Parent=Msa0449370-mRNA-1 |
| chr3_3 | exon | 32526910 | 32527005 | 32526910 | ID=Msa0449370-mRNA-1:exon:5915;Parent=Msa0449370-mRNA-1 |
| chr3_3 | CDS | 32523080 | 32523751 | 32523080 | ID=Msa0449370-mRNA-1:cds;Parent=Msa0449370-mRNA-1 |
| chr3_3 | CDS | 32523835 | 32524053 | 32523835 | ID=Msa0449370-mRNA-1:cds;Parent=Msa0449370-mRNA-1 |
| chr3_3 | CDS | 32524139 | 32524390 | 32524139 | ID=Msa0449370-mRNA-1:cds;Parent=Msa0449370-mRNA-1 |
| chr3_3 | CDS | 32524944 | 32525576 | 32524944 | ID=Msa0449370-mRNA-1:cds;Parent=Msa0449370-mRNA-1 |
| chr3_3 | CDS | 32525659 | 32525876 | 32525659 | ID=Msa0449370-mRNA-1:cds;Parent=Msa0449370-mRNA-1 |
| chr3_3 | CDS | 32526106 | 32526270 | 32526106 | ID=Msa0449370-mRNA-1:cds;Parent=Msa0449370-mRNA-1 |
| chr3_3 | CDS | 32526370 | 32526474 | 32526370 | ID=Msa0449370-mRNA-1:cds;Parent=Msa0449370-mRNA-1 |
| chr3_3 | CDS | 32526561 | 32526630 | 32526561 | ID=Msa0449370-mRNA-1:cds;Parent=Msa0449370-mRNA-1 |
| chr3_3 | CDS | 32526719 | 32526814 | 32526719 | ID=Msa0449370-mRNA-1:cds;Parent=Msa0449370-mRNA-1 |
| chr3_3 | CDS | 32526910 | 32527005 | 32526910 | ID=Msa0449370-mRNA-1:cds;Parent=Msa0449370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
