AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0449600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449600 MtrunA17_Chr3g0093281 74.267 307 39 4 1 273 1 301 1.07e-151 425
Msa0449600 MtrunA17_Chr8g0341411 61.258 302 87 4 1 273 1 301 7.66e-121 347
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449600 AT5G53530.1 58.609 302 95 4 1 273 1 301 1.13e-117 339
Msa0449600 AT4G27690.1 58.940 302 94 4 1 273 1 301 2.36e-117 338
Msa0449600 AT4G27690.2 59.124 274 82 4 29 273 1 273 1.33e-104 305

Find 72 sgRNAs with CRISPR-Local

Find 613 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACGAATTTGTTAAAATA+AGG 0.137468 3_3:-33964017 Msa0449600:five_prime_UTR
ATAGAGAGAAAGAGAGATTT+TGG 0.152265 3_3:+33963770 None:intergenic
CCCTTGAGAAATTTACTATT+TGG 0.236047 3_3:+33963880 None:intergenic
TCAACTGTTAGTTATGTTAC+TGG 0.281502 3_3:-33963816 Msa0449600:five_prime_UTR
CCTTGCGAAGTTTGAGTTGA+TGG 0.292292 3_3:-33956081 Msa0449600:CDS
CTCTCCAAGCACAAATATTC+AGG 0.328795 3_3:+33955329 None:intergenic
TTACGAATTTGTTAAAATAA+GGG 0.331745 3_3:-33964016 Msa0449600:five_prime_UTR
CCTAACATTGATCCCATTGT+AGG 0.348421 3_3:+33961222 None:intergenic
TTCTATGACTTTACTTCTCT+TGG 0.354378 3_3:-33961643 Msa0449600:intron
CTAACAGTTGAGTTCAGTTC+AGG 0.355657 3_3:+33963828 None:intergenic
GTCGATTAATAACAGCATTA+AGG 0.364630 3_3:-33956589 Msa0449600:intron
AGTCCCACTCAGTCTATGTT+TGG 0.366621 3_3:-33955229 Msa0449600:three_prime_UTR
CAAAGTCAGGAGAATATAGT+TGG 0.385504 3_3:-33962202 Msa0449600:CDS
CGTCGAGAGTCTACCGGATC+AGG 0.390186 3_3:-33956131 Msa0449600:CDS
GGTTCCTCTCTTTCAAAGTC+AGG 0.403485 3_3:-33962215 Msa0449600:CDS
TGATTGCAGAATATAATTGC+TGG 0.406483 3_3:-33963669 Msa0449600:intron
GTTACCTGTTTGCGAGTTGT+TGG 0.411730 3_3:+33963603 None:intergenic
CAGATAAAGTAATTTGTGTC+TGG 0.426601 3_3:-33955147 Msa0449600:three_prime_UTR
CTCCGTTTCAACATATGTAT+TGG 0.428647 3_3:+33956106 None:intergenic
TCAACAGTGGAGAACTCAAA+TGG 0.438119 3_3:+33961259 None:intergenic
AAAACATGGAACTTGAAATC+AGG 0.446337 3_3:-33956154 Msa0449600:CDS
CTCATTTGACGAGGGTATAA+CGG 0.452687 3_3:+33963960 None:intergenic
GACTCCTGAATATTTGTGCT+TGG 0.459535 3_3:-33955333 Msa0449600:exon
GTACGCGAACTTGATGTTCC+TGG 0.461881 3_3:-33961307 Msa0449600:CDS
GATACATTCATTTAAAATTG+AGG 0.463504 3_3:-33955125 None:intergenic
CGTTATACCCTCGTCAAATG+AGG 0.473484 3_3:-33963959 Msa0449600:five_prime_UTR
TCCAAATAGTAAATTTCTCA+AGG 0.475361 3_3:-33963881 Msa0449600:five_prime_UTR
GGATTGAGAAATAATCTGAT+AGG 0.475643 3_3:+33955492 None:intergenic
CTGTTATTAATCGACGGTGC+TGG 0.475976 3_3:+33956597 None:intergenic
ATATGTATTGGTCCCTGATC+CGG 0.479814 3_3:+33956118 None:intergenic
TGATCCAACAACTCGCAAAC+AGG 0.480173 3_3:-33963607 Msa0449600:intron
TTTATAGGTTCGCGTGAAGA+AGG 0.483598 3_3:-33962257 Msa0449600:intron
AAAGTCAGGAGAATATAGTT+GGG 0.487916 3_3:-33962201 Msa0449600:CDS
GCTCACATCCTCGACAGAAC+AGG 0.489295 3_3:-33963912 Msa0449600:five_prime_UTR
CATCTGAAGGATGTTGTCAT+TGG 0.491672 3_3:-33956212 Msa0449600:CDS
TTGTTGATATTGTGATATGT+TGG 0.494473 3_3:+33955456 None:intergenic
GACCAATACATATGTTGAAA+CGG 0.497385 3_3:-33956108 Msa0449600:CDS
TGCCACATGAATCCTACAAT+GGG 0.508368 3_3:-33961234 Msa0449600:CDS
GGAAAATGACCAGACAGTTA+TGG 0.510732 3_3:-33962236 Msa0449600:CDS
TAACAGTTGAGTTCAGTTCA+GGG 0.517147 3_3:+33963829 None:intergenic
CAACAGTGGAGAACTCAAAT+GGG 0.517262 3_3:+33961260 None:intergenic
CAACAACATTGTGGAACACA+TGG 0.518191 3_3:-33960281 Msa0449600:CDS
AGAGAGGAACCATAACTGTC+TGG 0.528843 3_3:+33962227 None:intergenic
TTCAGTTCAGGGATCAATCA+AGG 0.543502 3_3:+33963840 None:intergenic
TATGTTGGTGTCAACTCATA+TGG 0.545108 3_3:+33955471 None:intergenic
CCATCAACTCAAACTTCGCA+AGG 0.549987 3_3:+33956081 None:intergenic
GCAAACAATTCCTTATTGCA+AGG 0.555253 3_3:+33955291 None:intergenic
TTCTCCTGACTTTGAAAGAG+AGG 0.557843 3_3:+33962211 None:intergenic
CTTGCTGCTTGAAGTAGCGT+CGG 0.561469 3_3:+33955382 None:intergenic
ATGGATGGTGTTCCAGTCCG+AGG 0.573375 3_3:-33956062 Msa0449600:intron
AGGAAATGCAAACCTCGGAC+TGG 0.582954 3_3:+33956050 None:intergenic
CCAAATAGTAAATTTCTCAA+GGG 0.584113 3_3:-33963880 Msa0449600:five_prime_UTR
TTAATGCTGTTATTAATCGA+CGG 0.588004 3_3:+33956591 None:intergenic
GCGAAGTTTGAGTTGATGGA+TGG 0.592194 3_3:-33956077 Msa0449600:CDS
AATTAACAGGTATCATCTGA+AGG 0.593587 3_3:-33956225 Msa0449600:intron
GCCTTTATGCAGATGGAAGT+AGG 0.596966 3_3:-33956375 Msa0449600:intron
ATGCCACATGAATCCTACAA+TGG 0.597855 3_3:-33961235 Msa0449600:CDS
GCAGAATTGTACTTTGACAG+AGG 0.603352 3_3:-33961670 Msa0449600:intron
TTCATGTGGCATTTCAACAG+TGG 0.607129 3_3:+33961246 None:intergenic
GTCGAGAGTCTACCGGATCA+GGG 0.615135 3_3:-33956130 Msa0449600:CDS
ATCAGGCGTCGAGAGTCTAC+CGG 0.626089 3_3:-33956137 Msa0449600:CDS
TTCAAATCCTCATTTGACGA+GGG 0.628513 3_3:+33963952 None:intergenic
TCAGGAGAATATAGTTGGGG+AGG 0.630279 3_3:-33962197 Msa0449600:intron
ATCCCATTGTAGGATTCATG+TGG 0.635703 3_3:+33961232 None:intergenic
AGACTAATCCTGTTCTGTCG+AGG 0.641007 3_3:+33963904 None:intergenic
CATCAACTCAAACTTCGCAA+GGG 0.643439 3_3:+33956082 None:intergenic
AGAACCAAACATAGACTGAG+TGG 0.648712 3_3:+33955225 None:intergenic
ATTCAAATCCTCATTTGACG+AGG 0.651894 3_3:+33963951 None:intergenic
AAGTCAGGAGAATATAGTTG+GGG 0.654882 3_3:-33962200 Msa0449600:CDS
GAACCAAACATAGACTGAGT+GGG 0.656529 3_3:+33955226 None:intergenic
ATATTCAGGAGTCTTCAAGA+AGG 0.676923 3_3:+33955343 None:intergenic
AGTTCAGGGATCAATCAAGG+TGG 0.768699 3_3:+33963843 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAAATGAATAAATAA+AGG + chr3_3:33957353-33957372 None:intergenic 10.0%
!!! TTTTTTAATTTAAAAATGTC+AGG - chr3_3:33958041-33958060 Msa0449600:intron 10.0%
!!! TAACTATTTCATTTTTTTTA+TGG - chr3_3:33958194-33958213 Msa0449600:intron 10.0%
!!! AACTATTTCATTTTTTTTAT+GGG - chr3_3:33958195-33958214 Msa0449600:intron 10.0%
!!! ATATATTTGAAATTTGAAAA+TGG + chr3_3:33960303-33960322 None:intergenic 10.0%
!! TAATATATAATATATGTATG+GGG + chr3_3:33962327-33962346 None:intergenic 10.0%
!! CTAATATATAATATATGTAT+GGG + chr3_3:33962328-33962347 None:intergenic 10.0%
!! TCTAATATATAATATATGTA+TGG + chr3_3:33962329-33962348 None:intergenic 10.0%
!!! AATAATCTTATATTTTCAAT+TGG - chr3_3:33963237-33963256 Msa0449600:intron 10.0%
!!! ATTACGAATTTGTTAAAATA+AGG - chr3_3:33955153-33955172 Msa0449600:three_prime_UTR 15.0%
!!! TTACGAATTTGTTAAAATAA+GGG - chr3_3:33955154-33955173 Msa0449600:three_prime_UTR 15.0%
!! TATGATATATGACAATATTA+TGG + chr3_3:33955858-33955877 None:intergenic 15.0%
!! TATAAACATTATATGTCTTA+TGG + chr3_3:33956083-33956102 None:intergenic 15.0%
!! AAGACATATAATGTTTATAT+AGG - chr3_3:33956084-33956103 Msa0449600:CDS 15.0%
!!! TTAAATCAAAATGATTTTGT+TGG + chr3_3:33956869-33956888 None:intergenic 15.0%
!! TTCCTATTCAAAATAAAATA+GGG + chr3_3:33958403-33958422 None:intergenic 15.0%
!! TTTCCTATTCAAAATAAAAT+AGG + chr3_3:33958404-33958423 None:intergenic 15.0%
!! ACATATACAATTTAACTAAA+TGG - chr3_3:33958556-33958575 Msa0449600:intron 15.0%
!! TATATTAGTTAATTGAGAAT+AGG - chr3_3:33958598-33958617 Msa0449600:intron 15.0%
!! TTAACAAAGAGAAAAATAAT+TGG - chr3_3:33961257-33961276 Msa0449600:CDS 15.0%
!! ATTAGATTTATATGGAATAA+AGG - chr3_3:33962343-33962362 Msa0449600:intron 15.0%
!!! ATTTGATTTGATTTGATTGA+TGG - chr3_3:33955458-33955477 Msa0449600:CDS 20.0%
!! AGATTAATGAATGAATGAAT+TGG + chr3_3:33955888-33955907 None:intergenic 20.0%
!! TCATTATAAGATAACTACAA+CGG - chr3_3:33956118-33956137 Msa0449600:CDS 20.0%
!!! TAAAATAAGAAGCACAAATT+TGG + chr3_3:33956245-33956264 None:intergenic 20.0%
!!! TTGAAATTTATTTGTTGAGA+CGG - chr3_3:33957069-33957088 Msa0449600:intron 20.0%
!! AGTTTAGAAACTGAATAAAA+TGG + chr3_3:33957602-33957621 None:intergenic 20.0%
!! TTTGCTTATATAAAAAACCA+GGG + chr3_3:33957658-33957677 None:intergenic 20.0%
!!! TTTTGCTTATATAAAAAACC+AGG + chr3_3:33957659-33957678 None:intergenic 20.0%
!!! TTTTTGCTCATATAAAAAAC+CGG - chr3_3:33957722-33957741 Msa0449600:intron 20.0%
!!! TTCTTTTCATATAAATTTCC+AGG + chr3_3:33957884-33957903 None:intergenic 20.0%
!! TTTAATAGATGAGAAGTTTA+TGG - chr3_3:33958094-33958113 Msa0449600:intron 20.0%
!!! ATTTCATTTTTTTTATGGGA+AGG - chr3_3:33958199-33958218 Msa0449600:intron 20.0%
!!! TTTCATTTTTTTTATGGGAA+GGG - chr3_3:33958200-33958219 Msa0449600:intron 20.0%
!!! TTCCCTATTTTATTTTGAAT+AGG - chr3_3:33958398-33958417 Msa0449600:intron 20.0%
!!! CATTATTTTATTTTCCTTAG+TGG - chr3_3:33958638-33958657 Msa0449600:intron 20.0%
!!! ATCATGATAACCTTTTATTT+CGG - chr3_3:33958722-33958741 Msa0449600:intron 20.0%
!! TAATGCATGTAATCATATAT+AGG + chr3_3:33958987-33959006 None:intergenic 20.0%
!!! TCAAAATTTATTAGGGTTTT+GGG + chr3_3:33959454-33959473 None:intergenic 20.0%
!!! ATCAAAATTTATTAGGGTTT+TGG + chr3_3:33959455-33959474 None:intergenic 20.0%
!! AGCATGATCAAAATTTATTA+GGG + chr3_3:33959461-33959480 None:intergenic 20.0%
!! TAGCATGATCAAAATTTATT+AGG + chr3_3:33959462-33959481 None:intergenic 20.0%
!!! AACTAATAAATGAGTTGATA+TGG - chr3_3:33959743-33959762 Msa0449600:intron 20.0%
!! TGTTTATTTCATAGAAAAGA+GGG + chr3_3:33959786-33959805 None:intergenic 20.0%
!! TTGTTTATTTCATAGAAAAG+AGG + chr3_3:33959787-33959806 None:intergenic 20.0%
!! AAAGTATATATGAAGGAATT+TGG + chr3_3:33960105-33960124 None:intergenic 20.0%
!!! GCAACAATATATTTTTCTTT+TGG + chr3_3:33960475-33960494 None:intergenic 20.0%
!!! TTACGATTTTTACTCAAAAA+GGG + chr3_3:33960514-33960533 None:intergenic 20.0%
!!! TTTTTTTTTCCTAAACCATT+GGG + chr3_3:33961718-33961737 None:intergenic 20.0%
!!! CTTTTAAATGTAGTTATGAA+AGG + chr3_3:33962284-33962303 None:intergenic 20.0%
!! TTAAATTAATGATCACAGTA+AGG + chr3_3:33962654-33962673 None:intergenic 20.0%
!! GAGAATCAAATTAAAAAACA+TGG - chr3_3:33963002-33963021 Msa0449600:intron 20.0%
!!! GCATTTTTAGTTTCTTTATT+CGG - chr3_3:33963150-33963169 Msa0449600:intron 20.0%
!! CTAATTTCTTATTCAATGTT+TGG - chr3_3:33963213-33963232 Msa0449600:intron 20.0%
!! CAATTGGTTGATTAAATAAT+TGG - chr3_3:33963253-33963272 Msa0449600:intron 20.0%
!!! AAGTTTTATGTAGGAAATAA+AGG - chr3_3:33963294-33963313 Msa0449600:intron 20.0%
!!! AGTTTTATGTAGGAAATAAA+GGG - chr3_3:33963295-33963314 Msa0449600:intron 20.0%
!! AAAGTATATATTGCTGATAT+TGG - chr3_3:33963636-33963655 Msa0449600:CDS 20.0%
!! AAGTATATATTGCTGATATT+GGG - chr3_3:33963637-33963656 Msa0449600:CDS 20.0%
!!! TTTTCTAAATCTTGTTTTTG+TGG - chr3_3:33963755-33963774 Msa0449600:intron 20.0%
! TCCAAATAGTAAATTTCTCA+AGG - chr3_3:33955289-33955308 Msa0449600:intron 25.0%
! CCAAATAGTAAATTTCTCAA+GGG - chr3_3:33955290-33955309 Msa0449600:intron 25.0%
! TCTCTCTATTTGAAAAATCA+TGG - chr3_3:33955414-33955433 Msa0449600:CDS 25.0%
! CTATTTGAAAAATCATGGTA+AGG - chr3_3:33955419-33955438 Msa0449600:CDS 25.0%
!! AAAGAGATTGAAATTTTGCA+AGG + chr3_3:33955540-33955559 None:intergenic 25.0%
!! CATTTCTCTTATAGTTTTCT+AGG - chr3_3:33955918-33955937 Msa0449600:intron 25.0%
! TAGTTTCTCTTTCTAAATTC+TGG + chr3_3:33956007-33956026 None:intergenic 25.0%
!! TAATCTAGAAGGAATCTTTT+AGG + chr3_3:33956185-33956204 None:intergenic 25.0%
! ATGACTTATCTTAATCTAGA+AGG + chr3_3:33956196-33956215 None:intergenic 25.0%
! AAAGTAAATCAGATGTTGAT+AGG + chr3_3:33956273-33956292 None:intergenic 25.0%
! CCAACACAAGAATAAAAAAA+TGG + chr3_3:33956355-33956374 None:intergenic 25.0%
!!! CCATTTTTTTATTCTTGTGT+TGG - chr3_3:33956352-33956371 Msa0449600:CDS 25.0%
! ATGAGTTTGAATAATACTTC+CGG - chr3_3:33956527-33956546 Msa0449600:intron 25.0%
!! CAAGTTAGAATTCATTTTGA+AGG - chr3_3:33956592-33956611 Msa0449600:CDS 25.0%
!!! TCTATTTGATTTCACTTTTG+GGG + chr3_3:33956668-33956687 None:intergenic 25.0%
!!! CTCTATTTGATTTCACTTTT+GGG + chr3_3:33956669-33956688 None:intergenic 25.0%
! CAAAAGTGAAATCAAATAGA+GGG - chr3_3:33956668-33956687 Msa0449600:intron 25.0%
! CTAAGTGAATAACAGAAATA+AGG + chr3_3:33956771-33956790 None:intergenic 25.0%
!! AATCAAAATGATTTTGTTGG+AGG + chr3_3:33956866-33956885 None:intergenic 25.0%
!!! TTTTACCTTTGTTTACTTTC+TGG - chr3_3:33957025-33957044 Msa0449600:intron 25.0%
!!! TTCTTTTTGGGTATATTTCT+AGG - chr3_3:33957190-33957209 Msa0449600:intron 25.0%
! GACAAACACATAATTAAGAA+AGG + chr3_3:33957274-33957293 None:intergenic 25.0%
!! ATGAAAATTGTGTTTAGCTT+AGG - chr3_3:33957305-33957324 Msa0449600:intron 25.0%
!!! GCTTATCATTTTTATATGCA+TGG - chr3_3:33957756-33957775 Msa0449600:intron 25.0%
!!! AGTTATAAAAAGCATCATGA+AGG + chr3_3:33957825-33957844 None:intergenic 25.0%
! AGAAAATACACCTAAAATTC+AGG + chr3_3:33958017-33958036 None:intergenic 25.0%
!! AAAACATCTAAAACGAATGT+TGG + chr3_3:33958335-33958354 None:intergenic 25.0%
!!! TTCGTTTTAGATGTTTTTCT+TGG - chr3_3:33958338-33958357 Msa0449600:intron 25.0%
!! TTTTAGATGTTTTTCTTGGT+TGG - chr3_3:33958342-33958361 Msa0449600:intron 25.0%
!!! ATATAATATCCCTCTAGAAT+GGG + chr3_3:33958583-33958602 None:intergenic 25.0%
!! AATATAATATCCCTCTAGAA+TGG + chr3_3:33958584-33958603 None:intergenic 25.0%
! CAACAGAAACAAAGTAAATT+TGG + chr3_3:33958675-33958694 None:intergenic 25.0%
!!! CAAATTTACTTTGTTTCTGT+TGG - chr3_3:33958673-33958692 Msa0449600:intron 25.0%
! TGACTTATTTGTACAGTAAA+TGG - chr3_3:33958697-33958716 Msa0449600:intron 25.0%
! ATTTCTTTCAATATTGTCAC+TGG - chr3_3:33958776-33958795 Msa0449600:intron 25.0%
! CTGGTCAATAAATTACTTAA+AGG - chr3_3:33958795-33958814 Msa0449600:intron 25.0%
! GTCAATAAATTACTTAAAGG+TGG - chr3_3:33958798-33958817 Msa0449600:intron 25.0%
!! AAATTTTGTCAACAACATTG+TGG - chr3_3:33958880-33958899 Msa0449600:intron 25.0%
! TCATATATAGGTCATATTGT+TGG + chr3_3:33958975-33958994 None:intergenic 25.0%
! GATTAAGAGAAAATCAATTG+AGG - chr3_3:33959259-33959278 Msa0449600:intron 25.0%
! GTTTATTTCATAGAAAAGAG+GGG + chr3_3:33959785-33959804 None:intergenic 25.0%
! TCAAGGCAAAATATAGAAAA+TGG + chr3_3:33959940-33959959 None:intergenic 25.0%
! ATTATCAAACAACACCATTA+TGG - chr3_3:33960036-33960055 Msa0449600:intron 25.0%
! TTATCAAACAACACCATTAT+GGG - chr3_3:33960037-33960056 Msa0449600:intron 25.0%
! TGAAGGAATTTGGTTAATAA+GGG + chr3_3:33960095-33960114 None:intergenic 25.0%
! ATGAAGGAATTTGGTTAATA+AGG + chr3_3:33960096-33960115 None:intergenic 25.0%
! CTTTCTCAAAGTATATATGA+AGG + chr3_3:33960112-33960131 None:intergenic 25.0%
!!! TATATTGTTGCCTTTTAGAA+AGG - chr3_3:33960484-33960503 Msa0449600:intron 25.0%
!!! ATATTGTTGCCTTTTAGAAA+GGG - chr3_3:33960485-33960504 Msa0449600:intron 25.0%
!! CTTACGATTTTTACTCAAAA+AGG + chr3_3:33960515-33960534 None:intergenic 25.0%
!!! TTTCTGATAAGTTGTTTCTA+TGG + chr3_3:33960769-33960788 None:intergenic 25.0%
! ATAGAAACAACTTATCAGAA+AGG - chr3_3:33960768-33960787 Msa0449600:intron 25.0%
! TAGAAACAACTTATCAGAAA+GGG - chr3_3:33960769-33960788 Msa0449600:intron 25.0%
! TTCTTTAGATAAAGGCTAAT+GGG + chr3_3:33961065-33961084 None:intergenic 25.0%
! ATTCTTTAGATAAAGGCTAA+TGG + chr3_3:33961066-33961085 None:intergenic 25.0%
! CTTCTTCATTCTTTAGATAA+AGG + chr3_3:33961073-33961092 None:intergenic 25.0%
! TAAAGAATGAAGAAGAACAA+CGG - chr3_3:33961078-33961097 Msa0449600:intron 25.0%
! AAATAATTGGAAGCCAAATT+TGG - chr3_3:33961270-33961289 Msa0449600:CDS 25.0%
! AATAATTGGAAGCCAAATTT+GGG - chr3_3:33961271-33961290 Msa0449600:CDS 25.0%
! ATTGGGTCTAATATCTTATT+CGG + chr3_3:33961701-33961720 None:intergenic 25.0%
!!! GTTTTTTTTTCCTAAACCAT+TGG + chr3_3:33961719-33961738 None:intergenic 25.0%
! AAATACCTGTTAAAATGTCA+TGG + chr3_3:33962106-33962125 None:intergenic 25.0%
! AGTAAGAAAACGTTTACATA+GGG + chr3_3:33962523-33962542 None:intergenic 25.0%
! TAGTAAGAAAACGTTTACAT+AGG + chr3_3:33962524-33962543 None:intergenic 25.0%
! TTAATGCTGTTATTAATCGA+CGG + chr3_3:33962582-33962601 None:intergenic 25.0%
!!! TGGCAAAATATACTTTTTAC+TGG - chr3_3:33962978-33962997 Msa0449600:intron 25.0%
! AAACTAAAAATGCTGTAAAG+AGG + chr3_3:33963143-33963162 None:intergenic 25.0%
!!! CTTTTGGATAAGTTTTATGT+AGG - chr3_3:33963285-33963304 Msa0449600:intron 25.0%
!! GTTTTATGTAGGAAATAAAG+GGG - chr3_3:33963296-33963315 Msa0449600:intron 25.0%
!! TTGACAAAAAGGTTCAATTT+TGG + chr3_3:33963343-33963362 None:intergenic 25.0%
! AAACAGAAAACCAAAAAGAA+GGG + chr3_3:33963531-33963550 None:intergenic 25.0%
! AAAACAGAAAACCAAAAAGA+AGG + chr3_3:33963532-33963551 None:intergenic 25.0%
!!! TCTTTTTGGTTTTCTGTTTT+TGG - chr3_3:33963532-33963551 Msa0449600:intron 25.0%
! TTGTTGATATTGTGATATGT+TGG + chr3_3:33963717-33963736 None:intergenic 25.0%
CCCTTGAGAAATTTACTATT+TGG + chr3_3:33955293-33955312 None:intergenic 30.0%
TCAACTGTTAGTTATGTTAC+TGG - chr3_3:33955354-33955373 Msa0449600:CDS 30.0%
! TAGAGAGAAAGAGAGATTTT+GGG + chr3_3:33955402-33955421 None:intergenic 30.0%
! ATAGAGAGAAAGAGAGATTT+TGG + chr3_3:33955403-33955422 None:intergenic 30.0%
TGATTGCAGAATATAATTGC+TGG - chr3_3:33955501-33955520 Msa0449600:CDS 30.0%
AAAATCACATAATTCCGACA+CGG - chr3_3:33955708-33955727 Msa0449600:intron 30.0%
AGAAACTAGAGATAAAAGAG+AGG - chr3_3:33956019-33956038 Msa0449600:intron 30.0%
!! AAAGTATCGCTCAAGTTAAA+GGG + chr3_3:33956444-33956463 None:intergenic 30.0%
!! AAAAGTATCGCTCAAGTTAA+AGG + chr3_3:33956445-33956464 None:intergenic 30.0%
TGTATCGCATAAAACACTTA+AGG - chr3_3:33956464-33956483 Msa0449600:intron 30.0%
! CTACATCAACTCAATTTTCA+TGG + chr3_3:33956497-33956516 None:intergenic 30.0%
!! CCTCTATTTGATTTCACTTT+TGG + chr3_3:33956670-33956689 None:intergenic 30.0%
CCAAAAGTGAAATCAAATAG+AGG - chr3_3:33956667-33956686 Msa0449600:intron 30.0%
TCACTTAGATCATTGAAGTA+AGG - chr3_3:33956783-33956802 Msa0449600:intron 30.0%
AAAGTCAGGAGAATATAGTT+GGG - chr3_3:33956969-33956988 Msa0449600:intron 30.0%
AATCACCAGAAAGTAAACAA+AGG + chr3_3:33957033-33957052 None:intergenic 30.0%
! TGCTTCTGTTCATTCTTTTT+GGG - chr3_3:33957178-33957197 Msa0449600:intron 30.0%
!! TTTGGGTATATTTCTAGGAT+TGG - chr3_3:33957195-33957214 Msa0449600:intron 30.0%
AAATGGCTATTGAATTAGCA+AGG + chr3_3:33957223-33957242 None:intergenic 30.0%
GGCACATTTATTAGTCAAAA+TGG + chr3_3:33957240-33957259 None:intergenic 30.0%
TTAAGAAAGGATGCAAATCA+GGG + chr3_3:33957261-33957280 None:intergenic 30.0%
ATTAAGAAAGGATGCAAATC+AGG + chr3_3:33957262-33957281 None:intergenic 30.0%
AAAGTACAATTCTGCAAACA+AGG + chr3_3:33957495-33957514 None:intergenic 30.0%
TTCTATGACTTTACTTCTCT+TGG - chr3_3:33957527-33957546 Msa0449600:intron 30.0%
ATGGAGAAGACAAAAACAAA+AGG + chr3_3:33957583-33957602 None:intergenic 30.0%
TGATAAGCAAATATTCACTC+CGG + chr3_3:33957744-33957763 None:intergenic 30.0%
! ACCTTGAATTCCTGAATTTT+AGG - chr3_3:33958004-33958023 Msa0449600:intron 30.0%
ACCTAAAATTCAGGAATTCA+AGG + chr3_3:33958008-33958027 None:intergenic 30.0%
!!! TTTTCTTGGTTGGTAATACT+TGG - chr3_3:33958352-33958371 Msa0449600:intron 30.0%
!! TAACCTTTTATTTCGGCTTA+TGG - chr3_3:33958729-33958748 Msa0449600:intron 30.0%
!! AACCTTTTATTTCGGCTTAT+GGG - chr3_3:33958730-33958749 Msa0449600:intron 30.0%
TATATAGGTCATATTGTTGG+CGG + chr3_3:33958972-33958991 None:intergenic 30.0%
! ATCGATTCTGTATGTACATA+TGG - chr3_3:33959024-33959043 Msa0449600:intron 30.0%
TCGATTCTGTATGTACATAT+GGG - chr3_3:33959025-33959044 Msa0449600:intron 30.0%
GCACATATATGTAGATGATT+TGG + chr3_3:33959288-33959307 None:intergenic 30.0%
!!! AAAGCCCATAACCTTTTTTA+CGG + chr3_3:33959321-33959340 None:intergenic 30.0%
TCAAACATTCTTTCCATACA+AGG - chr3_3:33959395-33959414 Msa0449600:intron 30.0%
TAAACATAGTTGACCTTGTA+TGG + chr3_3:33959411-33959430 None:intergenic 30.0%
TATTTCTCAATGTTTCAGCA+AGG - chr3_3:33959512-33959531 Msa0449600:intron 30.0%
AATGACCATGAATAGAGATA+TGG - chr3_3:33959605-33959624 Msa0449600:intron 30.0%
TGTAACCATATCTCTATTCA+TGG + chr3_3:33959613-33959632 None:intergenic 30.0%
GTTTCCTTTCTTAGTACATA+GGG + chr3_3:33959680-33959699 None:intergenic 30.0%
TGTTTCCTTTCTTAGTACAT+AGG + chr3_3:33959681-33959700 None:intergenic 30.0%
! TATATTTTGCCTTGACAGAA+TGG - chr3_3:33959945-33959964 Msa0449600:intron 30.0%
TTGAAAATGGAACAAGATCA+AGG + chr3_3:33960290-33960309 None:intergenic 30.0%
TGGATCATTACAATTACATG+AGG + chr3_3:33960455-33960474 None:intergenic 30.0%
CACTCTTCATCTAATATTCT+AGG + chr3_3:33960558-33960577 None:intergenic 30.0%
TTACTACACAAAAAGACACA+CGG - chr3_3:33960630-33960649 Msa0449600:intron 30.0%
!! GCTGTTTTCAGTTCTTATTA+TGG - chr3_3:33960732-33960751 Msa0449600:intron 30.0%
TTCTTATTATGGAAGCCATT+TGG - chr3_3:33960743-33960762 Msa0449600:intron 30.0%
!!! TGCTTTTGGTTCGATTTTTT+AGG - chr3_3:33960836-33960855 Msa0449600:intron 30.0%
TTCCTTGGAAACTTCAAATT+TGG - chr3_3:33960859-33960878 Msa0449600:intron 30.0%
ATAAGGAATCTCAACTATGT+TGG + chr3_3:33961021-33961040 None:intergenic 30.0%
TCTTTAGATAAAGGCTAATG+GGG + chr3_3:33961064-33961083 None:intergenic 30.0%
!! GTCTAAAGTATTGATCTTTG+AGG + chr3_3:33961104-33961123 None:intergenic 30.0%
!! TGCTTAAGTTTTTGAGAAAG+TGG + chr3_3:33961161-33961180 None:intergenic 30.0%
CTAGATTTGATTCCCAAATT+TGG + chr3_3:33961286-33961305 None:intergenic 30.0%
AGATCTGACATATTTCTTGA+TGG - chr3_3:33961369-33961388 Msa0449600:intron 30.0%
ATAAAATATACACCATAGCC+CGG - chr3_3:33961551-33961570 Msa0449600:intron 30.0%
TATCTTATTCGGGTCTAATT+CGG + chr3_3:33961690-33961709 None:intergenic 30.0%
TTGGGTCTAATATCTTATTC+GGG + chr3_3:33961700-33961719 None:intergenic 30.0%
GAATAAGATATTAGACCCAA+TGG - chr3_3:33961700-33961719 Msa0449600:intron 30.0%
!!! TAAATGACTTGCTTTTTCCA+TGG + chr3_3:33961821-33961840 None:intergenic 30.0%
!! GAGAAAAGGTTTTGTGATTA+GGG + chr3_3:33961923-33961942 None:intergenic 30.0%
!! TGAGAAAAGGTTTTGTGATT+AGG + chr3_3:33961924-33961943 None:intergenic 30.0%
! ATCACAAAACCTTTTCTCAA+TGG - chr3_3:33961925-33961944 Msa0449600:intron 30.0%
TAGTTTATGTGAAGACATGT+AGG - chr3_3:33962070-33962089 Msa0449600:intron 30.0%
!! TACATCCATGACATTTTAAC+AGG - chr3_3:33962098-33962117 Msa0449600:intron 30.0%
!!! TCACATTTTAAAACCTCCTA+CGG + chr3_3:33962144-33962163 None:intergenic 30.0%
AGAAAAGAATCTGCAAAACA+AGG + chr3_3:33962261-33962280 None:intergenic 30.0%
! TTTTTGTAACACAAGTTCCT+CGG + chr3_3:33962377-33962396 None:intergenic 30.0%
TAATCTCAAACTGACATACA+AGG + chr3_3:33962481-33962500 None:intergenic 30.0%
TCTTACTACAATATCTGAAC+AGG - chr3_3:33962536-33962555 Msa0449600:intron 30.0%
GTCGATTAATAACAGCATTA+AGG - chr3_3:33962581-33962600 Msa0449600:intron 30.0%
TTAATAACAGCATTAAGGTG+AGG - chr3_3:33962586-33962605 Msa0449600:intron 30.0%
AATTAACAGGTATCATCTGA+AGG - chr3_3:33962945-33962964 Msa0449600:intron 30.0%
AAAACATGGAACTTGAAATC+AGG - chr3_3:33963016-33963035 Msa0449600:intron 30.0%
GACCAATACATATGTTGAAA+CGG - chr3_3:33963062-33963081 Msa0449600:intron 30.0%
! TAATTGGAGTACAGTACTTT+TGG - chr3_3:33963269-33963288 Msa0449600:intron 30.0%
TATTCACTCTCTTGACAAAA+AGG + chr3_3:33963354-33963373 None:intergenic 30.0%
! TCTAACATCGACTAAAGATA+TGG + chr3_3:33963462-33963481 None:intergenic 30.0%
GATGTTAGATCTCAACAATT+AGG - chr3_3:33963473-33963492 Msa0449600:intron 30.0%
!! GCTGATTTGCTTAGTTAATT+TGG - chr3_3:33963572-33963591 Msa0449600:intron 30.0%
! ATTGCTGATATTGGGTTTTT+AGG - chr3_3:33963645-33963664 Msa0449600:CDS 30.0%
GGATTGAGAAATAATCTGAT+AGG + chr3_3:33963681-33963700 None:intergenic 30.0%
!!! TGTTTTTTTGCCTTGCAATA+AGG - chr3_3:33963869-33963888 Msa0449600:five_prime_UTR 30.0%
GCAAATAATTCCTTATTGCA+AGG + chr3_3:33963904-33963923 None:intergenic 30.0%
! CAGATAAAGTAATTTGTGTC+TGG - chr3_3:33964023-33964042 Msa0449600:five_prime_UTR 30.0%
TTCAAATCCTCATTTGACGA+GGG + chr3_3:33955221-33955240 None:intergenic 35.0%
ATTCAAATCCTCATTTGACG+AGG + chr3_3:33955222-33955241 None:intergenic 35.0%
TAACAGTTGAGTTCAGTTCA+GGG + chr3_3:33955344-33955363 None:intergenic 35.0%
! AGAGAGAAAGAGAGATTTTG+GGG + chr3_3:33955401-33955420 None:intergenic 35.0%
! GAGATTGAAATTTTGCAAGG+AGG + chr3_3:33955537-33955556 None:intergenic 35.0%
GTAACACACGAAAGTGAAAA+CGG + chr3_3:33955626-33955645 None:intergenic 35.0%
AAATCACATAATTCCGACAC+GGG - chr3_3:33955709-33955728 Msa0449600:intron 35.0%
! ACTGATTTCGTTGTGAAAAC+CGG - chr3_3:33955813-33955832 Msa0449600:intron 35.0%
CAGATGTTAAGTAATCCGAT+AGG + chr3_3:33955954-33955973 None:intergenic 35.0%
AAAAAATGGAAACCCAGCTT+AGG + chr3_3:33956341-33956360 None:intergenic 35.0%
! CATCAACTCAATTTTCATGG+AGG + chr3_3:33956494-33956513 None:intergenic 35.0%
!! ATTTGATTTCACTTTTGGGG+AGG + chr3_3:33956665-33956684 None:intergenic 35.0%
TGAACACTTTCTCAATATCG+TGG + chr3_3:33956823-33956842 None:intergenic 35.0%
! TAATCTTTTGTACACACCCT+TGG - chr3_3:33956886-33956905 Msa0449600:intron 35.0%
CGAACCTATAAAACAACCAA+GGG + chr3_3:33956905-33956924 None:intergenic 35.0%
CAAAGTCAGGAGAATATAGT+TGG - chr3_3:33956968-33956987 Msa0449600:intron 35.0%
AAGTCAGGAGAATATAGTTG+GGG - chr3_3:33956970-33956989 Msa0449600:intron 35.0%
! TTATTTGTTGAGACGGTAAC+AGG - chr3_3:33957076-33957095 Msa0449600:intron 35.0%
TTAGTATAGAACCTGTACGT+GGG - chr3_3:33957099-33957118 Msa0449600:intron 35.0%
GGTGTAAAAATTGAGCTTCT+TGG - chr3_3:33957140-33957159 Msa0449600:intron 35.0%
ATTGAGCTTCTTGGTCAAAT+AGG - chr3_3:33957149-33957168 Msa0449600:intron 35.0%
! GTGCTTCTGTTCATTCTTTT+TGG - chr3_3:33957177-33957196 Msa0449600:intron 35.0%
AACAAAAGGAAAGATCTCAG+TGG + chr3_3:33957569-33957588 None:intergenic 35.0%
ATTTGATTGCCACTACAGTA+AGG + chr3_3:33957629-33957648 None:intergenic 35.0%
CGTACTGCACGTAAATTATA+GGG + chr3_3:33957848-33957867 None:intergenic 35.0%
TGATAGCTATTTAACTGCTC+TGG - chr3_3:33957979-33957998 Msa0449600:intron 35.0%
! TGCTTTCGAACAAGAGTATA+TGG + chr3_3:33958141-33958160 None:intergenic 35.0%
TCAAGACCACTTGATTAACT+TGG - chr3_3:33958223-33958242 Msa0449600:intron 35.0%
TAACTGCCAAGTTAATCAAG+TGG + chr3_3:33958232-33958251 None:intergenic 35.0%
AATTAGCAGCATATCGTTGT+TGG + chr3_3:33958285-33958304 None:intergenic 35.0%
AACGATATGCTGCTAATTCA+GGG - chr3_3:33958287-33958306 Msa0449600:intron 35.0%
GTAATACTTGGTTGGAGAAA+TGG - chr3_3:33958364-33958383 Msa0449600:intron 35.0%
! TATTTTCCTGCATAATGCCA+TGG - chr3_3:33958431-33958450 Msa0449600:intron 35.0%
! ATTTTCCTGCATAATGCCAT+GGG - chr3_3:33958432-33958451 Msa0449600:intron 35.0%
! GGAATAACTACGAGTGATTT+TGG - chr3_3:33958453-33958472 Msa0449600:intron 35.0%
! ACATGTATGACCCTGATTTT+GGG + chr3_3:33958509-33958528 None:intergenic 35.0%
! AACATGTATGACCCTGATTT+TGG + chr3_3:33958510-33958529 None:intergenic 35.0%
AACCCATAAGCCGAAATAAA+AGG + chr3_3:33958735-33958754 None:intergenic 35.0%
CCTGCAAGATAGCAAAAAAA+GGG + chr3_3:33958834-33958853 None:intergenic 35.0%
ACCTGCAAGATAGCAAAAAA+AGG + chr3_3:33958835-33958854 None:intergenic 35.0%
CGATTCTGTATGTACATATG+GGG - chr3_3:33959026-33959045 Msa0449600:intron 35.0%
GATTCTGTATGTACATATGG+GGG - chr3_3:33959027-33959046 Msa0449600:intron 35.0%
TATGAGTTGTCAAATTCCCT+CGG + chr3_3:33959101-33959120 None:intergenic 35.0%
TACATACAGAATCCTCTCAA+GGG + chr3_3:33959132-33959151 None:intergenic 35.0%
ATACATACAGAATCCTCTCA+AGG + chr3_3:33959133-33959152 None:intergenic 35.0%
TAAGCCTTCAAAAGTGAGTA+AGG - chr3_3:33959200-33959219 Msa0449600:intron 35.0%
AAGCCTTCAAAAGTGAGTAA+GGG - chr3_3:33959201-33959220 Msa0449600:intron 35.0%
! TCTGTTCTACTCTTTTCTTG+AGG + chr3_3:33959229-33959248 None:intergenic 35.0%
AGATCCCGTAAAAAAGGTTA+TGG - chr3_3:33959313-33959332 Msa0449600:intron 35.0%
GATCCCGTAAAAAAGGTTAT+GGG - chr3_3:33959314-33959333 Msa0449600:intron 35.0%
!!! AAGCCCATAACCTTTTTTAC+GGG + chr3_3:33959320-33959339 None:intergenic 35.0%
!! ATCAGCACATCACTTGTTTT+GGG + chr3_3:33959376-33959395 None:intergenic 35.0%
GATCAAATCTCCCATAAATG+AGG - chr3_3:33959558-33959577 Msa0449600:intron 35.0%
TTCTTAGTACATAGGGTTGA+GGG + chr3_3:33959673-33959692 None:intergenic 35.0%
TTTCTTAGTACATAGGGTTG+AGG + chr3_3:33959674-33959693 None:intergenic 35.0%
TCAACCCTATGTACTAAGAA+AGG - chr3_3:33959673-33959692 Msa0449600:intron 35.0%
!!! GTTTTGATTCTTCGTTCATG+AGG + chr3_3:33959720-33959739 None:intergenic 35.0%
TTTCATAGAAAAGAGGGGTT+TGG + chr3_3:33959780-33959799 None:intergenic 35.0%
AGAAAAACATCCTAGCTTGA+GGG + chr3_3:33959850-33959869 None:intergenic 35.0%
AAGAAAAACATCCTAGCTTG+AGG + chr3_3:33959851-33959870 None:intergenic 35.0%
! TGTTTTTCTTGACACTGCTT+TGG - chr3_3:33959861-33959880 Msa0449600:intron 35.0%
! AGTTGATTTCCATTCTGTCA+AGG + chr3_3:33959957-33959976 None:intergenic 35.0%
CCTAAATTCAGAACCCATAA+TGG + chr3_3:33960053-33960072 None:intergenic 35.0%
!! CCATTATGGGTTCTGAATTT+AGG - chr3_3:33960050-33960069 Msa0449600:intron 35.0%
!! ATAAGGGTGCTACATTAAAC+TGG + chr3_3:33960079-33960098 None:intergenic 35.0%
!!! CACTACAATGCCTTTTTTTG+TGG - chr3_3:33960428-33960447 Msa0449600:intron 35.0%
TACATGAGGACCACAAAAAA+AGG + chr3_3:33960441-33960460 None:intergenic 35.0%
!! ATTTTGTTGTGTTGTCAGTG+TGG + chr3_3:33960586-33960605 None:intergenic 35.0%
!! AAGTTGTTTCTATGGCCAAA+TGG + chr3_3:33960761-33960780 None:intergenic 35.0%
AAACAACTTATCAGAAAGGG+TGG - chr3_3:33960772-33960791 Msa0449600:intron 35.0%
GGAGTGTGATTCTAAATTAG+TGG - chr3_3:33960809-33960828 Msa0449600:intron 35.0%
GTGTGATTCTAAATTAGTGG+TGG - chr3_3:33960812-33960831 Msa0449600:intron 35.0%
!!! AAATTAGTGGTGGATGCTTT+TGG - chr3_3:33960822-33960841 Msa0449600:intron 35.0%
!!! GTTCGATTTTTTAGGTTCCT+TGG - chr3_3:33960844-33960863 Msa0449600:intron 35.0%
! CACCAAATTTGAAGTTTCCA+AGG + chr3_3:33960864-33960883 None:intergenic 35.0%
CTTGGAAACTTCAAATTTGG+TGG - chr3_3:33960862-33960881 Msa0449600:intron 35.0%
TCAGGGTCTCTCATATATTT+AGG - chr3_3:33960919-33960938 Msa0449600:intron 35.0%
CAGGGTCTCTCATATATTTA+GGG - chr3_3:33960920-33960939 Msa0449600:intron 35.0%
! GGAAGATGTTAGTTAAGTTG+CGG - chr3_3:33960941-33960960 Msa0449600:intron 35.0%
ACAGGTATCACAAAAGGATA+AGG + chr3_3:33961038-33961057 None:intergenic 35.0%
GTATTAGACTCTTGACAAAG+AGG + chr3_3:33961126-33961145 None:intergenic 35.0%
GAGAAAGTGGATATGTAACA+TGG + chr3_3:33961148-33961167 None:intergenic 35.0%
TTATGTTGTTGCTGAGAACT+AGG - chr3_3:33961181-33961200 Msa0449600:intron 35.0%
TATGTTGTTGCTGAGAACTA+GGG - chr3_3:33961182-33961201 Msa0449600:intron 35.0%
TGTTGAAACTGCAAAGATGA+CGG - chr3_3:33961338-33961357 Msa0449600:intron 35.0%
TCAGTAAGACTTATGTTGTG+AGG + chr3_3:33961597-33961616 None:intergenic 35.0%
AAAGTAATAGACACGACTGT+AGG + chr3_3:33961636-33961655 None:intergenic 35.0%
TTACTTGAATCGACGTAGTA+TGG - chr3_3:33961658-33961677 Msa0449600:CDS 35.0%
GATATTAGACCCAATGGTTT+AGG - chr3_3:33961706-33961725 Msa0449600:intron 35.0%
! ACAAAACCTTTTCTCAATGG+TGG - chr3_3:33961928-33961947 Msa0449600:intron 35.0%
TCACATAAACTACAGTGTTC+CGG + chr3_3:33962062-33962081 None:intergenic 35.0%
!!! CACATTTTAAAACCTCCTAC+GGG + chr3_3:33962143-33962162 None:intergenic 35.0%
!!! TTCCGATCAGAGGTTTTAAA+AGG - chr3_3:33962165-33962184 Msa0449600:intron 35.0%
!!! TCCGATCAGAGGTTTTAAAA+GGG - chr3_3:33962166-33962185 Msa0449600:intron 35.0%
!!! TCCCTTTTAAAACCTCTGAT+CGG + chr3_3:33962170-33962189 None:intergenic 35.0%
GAATAAAGGATAATCAACCG+AGG - chr3_3:33962357-33962376 Msa0449600:intron 35.0%
TCTAAAGACTATCTACTCGA+AGG - chr3_3:33962690-33962709 Msa0449600:intron 35.0%
ATGAAGCTTCAACTATTTCC+AGG + chr3_3:33962731-33962750 None:intergenic 35.0%
TGTAAATGCCTTTATGCAGA+TGG - chr3_3:33962788-33962807 Msa0449600:intron 35.0%
AAAGCAAGTGAGTCTGAAAA+AGG - chr3_3:33962856-33962875 Msa0449600:intron 35.0%
CTCCGTTTCAACATATGTAT+TGG + chr3_3:33963067-33963086 None:intergenic 35.0%
TAAAGAGGAAATGCAAACCT+CGG + chr3_3:33963128-33963147 None:intergenic 35.0%
!!! TGGTTTTCTGTTTTTGGAAG+TGG - chr3_3:33963538-33963557 Msa0449600:intron 35.0%
!! TATGTTGGTGTCAACTCATA+TGG + chr3_3:33963702-33963721 None:intergenic 35.0%
ATATTCAGGAGTCTTCAAGA+AGG + chr3_3:33963830-33963849 None:intergenic 35.0%
GCAAACAATTCCTTATTGCA+AGG + chr3_3:33963882-33963901 None:intergenic 35.0%
GAATTGTTTGCCTTGCAATA+AGG - chr3_3:33963891-33963910 Msa0449600:five_prime_UTR 35.0%
! CTCATTTGACGAGGGTATAA+CGG + chr3_3:33955213-33955232 None:intergenic 40.0%
TTCAGTTCAGGGATCAATCA+AGG + chr3_3:33955333-33955352 None:intergenic 40.0%
CTAACAGTTGAGTTCAGTTC+AGG + chr3_3:33955345-33955364 None:intergenic 40.0%
GGTAAGGTAAATGTACGTGT+TGG - chr3_3:33955435-33955454 Msa0449600:CDS 40.0%
!! AACTGTGAGGTGGATTGAAA+TGG - chr3_3:33955587-33955606 Msa0449600:intron 40.0%
AATCACATAATTCCGACACG+GGG - chr3_3:33955710-33955729 Msa0449600:intron 40.0%
TATGAAGCACGAACACTTCT+CGG + chr3_3:33955747-33955766 None:intergenic 40.0%
CTAGGATTTCTTCTGCCTAT+CGG - chr3_3:33955936-33955955 Msa0449600:intron 40.0%
!! GTGACTCAACTAGTTCTACA+AGG + chr3_3:33956223-33956242 None:intergenic 40.0%
ATTGCTAAACCACCTAAGCT+GGG - chr3_3:33956326-33956345 Msa0449600:intron 40.0%
TCCGTCTCATACAACATTGT+CGG - chr3_3:33956393-33956412 Msa0449600:intron 40.0%
ACCGACAATGTTGTATGAGA+CGG + chr3_3:33956397-33956416 None:intergenic 40.0%
TGCTTCTAACTGTATTGCTG+TGG - chr3_3:33956724-33956743 Msa0449600:intron 40.0%
GCTTCTAACTGTATTGCTGT+GGG - chr3_3:33956725-33956744 Msa0449600:intron 40.0%
CTTCTAACTGTATTGCTGTG+GGG - chr3_3:33956726-33956745 Msa0449600:intron 40.0%
!! CACACCCTTGGTTGTTTTAT+AGG - chr3_3:33956898-33956917 Msa0449600:intron 40.0%
GCGAACCTATAAAACAACCA+AGG + chr3_3:33956906-33956925 None:intergenic 40.0%
TTTATAGGTTCGCGTGAAGA+AGG - chr3_3:33956913-33956932 Msa0449600:intron 40.0%
GGAAAATGACCAGACAGTTA+TGG - chr3_3:33956934-33956953 Msa0449600:intron 40.0%
! TTCTCCTGACTTTGAAAGAG+AGG + chr3_3:33956962-33956981 None:intergenic 40.0%
GTTAGTATAGAACCTGTACG+TGG - chr3_3:33957098-33957117 Msa0449600:intron 40.0%
GCAGAATTGTACTTTGACAG+AGG - chr3_3:33957500-33957519 Msa0449600:intron 40.0%
AAACTCAGACCTTACTGTAG+TGG - chr3_3:33957617-33957636 Msa0449600:intron 40.0%
GGCAATCAAATATACTACCC+TGG - chr3_3:33957638-33957657 Msa0449600:intron 40.0%
TACATTGGAAAGGACATGAG+AGG + chr3_3:33957782-33957801 None:intergenic 40.0%
GGAAGAAAGCTACATTGGAA+AGG + chr3_3:33957792-33957811 None:intergenic 40.0%
GCATAGGAAGAAAGCTACAT+TGG + chr3_3:33957797-33957816 None:intergenic 40.0%
ATGTAGCTTTCTTCCTATGC+TGG - chr3_3:33957797-33957816 Msa0449600:intron 40.0%
TGTAGCTTTCTTCCTATGCT+GGG - chr3_3:33957798-33957817 Msa0449600:intron 40.0%
GCGTACTGCACGTAAATTAT+AGG + chr3_3:33957849-33957868 None:intergenic 40.0%
CAACAGTGGAGAACTCAAAT+GGG + chr3_3:33957913-33957932 None:intergenic 40.0%
TCAACAGTGGAGAACTCAAA+TGG + chr3_3:33957914-33957933 None:intergenic 40.0%
TTCATGTGGCATTTCAACAG+TGG + chr3_3:33957927-33957946 None:intergenic 40.0%
ATGCCACATGAATCCTACAA+TGG - chr3_3:33957935-33957954 Msa0449600:intron 40.0%
TGCCACATGAATCCTACAAT+GGG - chr3_3:33957936-33957955 Msa0449600:intron 40.0%
ATCCCATTGTAGGATTCATG+TGG + chr3_3:33957941-33957960 None:intergenic 40.0%
CCTAACATTGATCCCATTGT+AGG + chr3_3:33957951-33957970 None:intergenic 40.0%
CCTACAATGGGATCAATGTT+AGG - chr3_3:33957948-33957967 Msa0449600:intron 40.0%
ATGGGATCAATGTTAGGCTT+AGG - chr3_3:33957954-33957973 Msa0449600:intron 40.0%
CTTGTTCGAAAGCAAGATAG+AGG - chr3_3:33958147-33958166 Msa0449600:intron 40.0%
CAACGATATGCTGCTAATTC+AGG - chr3_3:33958286-33958305 Msa0449600:intron 40.0%
!! CTTGGTTGGTAATACTTGGT+TGG - chr3_3:33958356-33958375 Msa0449600:intron 40.0%
TACTTGGTTGGAGAAATGGT+TGG - chr3_3:33958368-33958387 Msa0449600:intron 40.0%
TTATTCCCATGGCATTATGC+AGG + chr3_3:33958440-33958459 None:intergenic 40.0%
ATCACTCGTAGTTATTCCCA+TGG + chr3_3:33958451-33958470 None:intergenic 40.0%
ATCAAGTTTCCCCCAAAATC+AGG - chr3_3:33958495-33958514 Msa0449600:intron 40.0%
TCAAGTTTCCCCCAAAATCA+GGG - chr3_3:33958496-33958515 Msa0449600:intron 40.0%
! ATGTATGACCCTGATTTTGG+GGG + chr3_3:33958507-33958526 None:intergenic 40.0%
! CATGTATGACCCTGATTTTG+GGG + chr3_3:33958508-33958527 None:intergenic 40.0%
ACTAAATGGTCCCATTCTAG+AGG - chr3_3:33958570-33958589 Msa0449600:intron 40.0%
CTAAATGGTCCCATTCTAGA+GGG - chr3_3:33958571-33958590 Msa0449600:intron 40.0%
!!! CCCTTTTTTTGCTATCTTGC+AGG - chr3_3:33958831-33958850 Msa0449600:intron 40.0%
CAACAACATTGTGGAACACA+TGG - chr3_3:33958889-33958908 Msa0449600:intron 40.0%
! AATTTTACTACTGTCCCCGA+GGG - chr3_3:33959082-33959101 Msa0449600:intron 40.0%
ATGAGTTGTCAAATTCCCTC+GGG + chr3_3:33959100-33959119 None:intergenic 40.0%
!! GATCCCTTACTCACTTTTGA+AGG + chr3_3:33959207-33959226 None:intergenic 40.0%
!! CTTCTGAGATCCCGTAAAAA+AGG - chr3_3:33959307-33959326 Msa0449600:intron 40.0%
!!! ACTTGTTTTGGGATAGGATC+AGG + chr3_3:33959365-33959384 None:intergenic 40.0%
!!! CACATCACTTGTTTTGGGAT+AGG + chr3_3:33959371-33959390 None:intergenic 40.0%
! GATCAGCACATCACTTGTTT+TGG + chr3_3:33959377-33959396 None:intergenic 40.0%
TTCAGCAAGGCAATACAAAG+TGG - chr3_3:33959525-33959544 Msa0449600:intron 40.0%
TCCTTTCTCGCCTCATTTAT+GGG + chr3_3:33959571-33959590 None:intergenic 40.0%
TTCCTTTCTCGCCTCATTTA+TGG + chr3_3:33959572-33959591 None:intergenic 40.0%
TAAATGAGGCGAGAAAGGAA+AGG - chr3_3:33959572-33959591 Msa0449600:intron 40.0%
AAATGAGGCGAGAAAGGAAA+GGG - chr3_3:33959573-33959592 Msa0449600:intron 40.0%
GACAAAGCTAAGTAGCTTCT+CGG - chr3_3:33959644-33959663 Msa0449600:intron 40.0%
TTCTTCGTTCATGAGGACTA+GGG + chr3_3:33959713-33959732 None:intergenic 40.0%
ATTCTTCGTTCATGAGGACT+AGG + chr3_3:33959714-33959733 None:intergenic 40.0%
AAAAACATCCTAGCTTGAGG+GGG + chr3_3:33959848-33959867 None:intergenic 40.0%
GAAAAACATCCTAGCTTGAG+GGG + chr3_3:33959849-33959868 None:intergenic 40.0%
!! TGCTGACTTGTTGGAGTATA+CGG - chr3_3:33959901-33959920 Msa0449600:intron 40.0%
! ACTTGTTGGAGTATACGGAA+GGG - chr3_3:33959906-33959925 Msa0449600:intron 40.0%
TTGTCCTATCATGATGAACC+AGG - chr3_3:33959987-33960006 Msa0449600:intron 40.0%
AGAACCTGGTTCATCATGAT+AGG + chr3_3:33959994-33960013 None:intergenic 40.0%
AATCAGCATTGCTAAGAACC+TGG + chr3_3:33960008-33960027 None:intergenic 40.0%
! CTCGCACTTTTGCAAAATCA+GGG + chr3_3:33960144-33960163 None:intergenic 40.0%
! TCTCGCACTTTTGCAAAATC+AGG + chr3_3:33960145-33960164 None:intergenic 40.0%
! TTTACTGACGCTGATTGAGA+GGG + chr3_3:33960227-33960246 None:intergenic 40.0%
! ATTTACTGACGCTGATTGAG+AGG + chr3_3:33960228-33960247 None:intergenic 40.0%
TTGCGTGACCAATCATGAAT+TGG - chr3_3:33960355-33960374 Msa0449600:intron 40.0%
ACAGTGAGCCAATTCATGAT+TGG + chr3_3:33960366-33960385 None:intergenic 40.0%
TCTTGTCTGATGTGAGTGAA+GGG - chr3_3:33960405-33960424 Msa0449600:intron 40.0%
AAAGGGACACCCTTTCTAAA+AGG + chr3_3:33960497-33960516 None:intergenic 40.0%
TACACAAAAAGACACACGGA+CGG - chr3_3:33960634-33960653 Msa0449600:intron 40.0%
!! TGGTTTGTTTAGAGACTCCT+GGG - chr3_3:33960697-33960716 Msa0449600:intron 40.0%
! GGAAACTTCAAATTTGGTGG+TGG - chr3_3:33960865-33960884 Msa0449600:intron 40.0%
! ATTGTCACCAGATGCTTTTC+AGG - chr3_3:33960901-33960920 Msa0449600:intron 40.0%
! TTGTCACCAGATGCTTTTCA+GGG - chr3_3:33960902-33960921 Msa0449600:intron 40.0%
! TGTTAGTTAAGTTGCGGTCT+TGG - chr3_3:33960947-33960966 Msa0449600:intron 40.0%
!!! ATTTTTTGCAGCACTGCAGA+TGG - chr3_3:33960977-33960996 Msa0449600:intron 40.0%
CATCCAGCGATGATAAATTC+CGG + chr3_3:33961217-33961236 None:intergenic 40.0%
CGCTGGATGGTAAAAGAAAA+TGG - chr3_3:33961228-33961247 Msa0449600:CDS 40.0%
! TTGGGAATCAAATCTAGAGC+TGG - chr3_3:33961289-33961308 Msa0449600:CDS 40.0%
! AATCAAATCTAGAGCTGGTC+AGG - chr3_3:33961294-33961313 Msa0449600:CDS 40.0%
TGATGGCATGAATTTGATCC+AGG - chr3_3:33961386-33961405 Msa0449600:intron 40.0%
ATGGAATCTACCAGACAACA+GGG - chr3_3:33961767-33961786 Msa0449600:intron 40.0%
!!! GGCAGGGTTTTTTTCTCTAT+AGG + chr3_3:33961849-33961868 None:intergenic 40.0%
ACGCTGAAATTCATCCACTA+TGG + chr3_3:33962001-33962020 None:intergenic 40.0%
AAAATGTGACTTCCGATCAG+AGG - chr3_3:33962155-33962174 Msa0449600:intron 40.0%
!!! TCAGAGGTTTTAAAAGGGAG+AGG - chr3_3:33962171-33962190 Msa0449600:intron 40.0%
!!! CAGAGGTTTTAAAAGGGAGA+GGG - chr3_3:33962172-33962191 Msa0449600:intron 40.0%
!!! AGAGGTTTTAAAAGGGAGAG+GGG - chr3_3:33962173-33962192 Msa0449600:intron 40.0%
TCAGGCAAGAAGCAGTATAT+TGG + chr3_3:33962403-33962422 None:intergenic 40.0%
AATCTTGCCATAGCATGATC+AGG + chr3_3:33962421-33962440 None:intergenic 40.0%
TCCTACTTCCATCTGCATAA+AGG + chr3_3:33962799-33962818 None:intergenic 40.0%
CATCTGAAGGATGTTGTCAT+TGG - chr3_3:33962958-33962977 Msa0449600:intron 40.0%
! ATATGTATTGGTCCCTGATC+CGG + chr3_3:33963055-33963074 None:intergenic 40.0%
CATCAACTCAAACTTCGCAA+GGG + chr3_3:33963091-33963110 None:intergenic 40.0%
! TCAACTCTGTCCCTTCTTTT+TGG - chr3_3:33963518-33963537 Msa0449600:intron 40.0%
GACTCCTGAATATTTGTGCT+TGG - chr3_3:33963837-33963856 Msa0449600:five_prime_UTR 40.0%
CTCTCCAAGCACAAATATTC+AGG + chr3_3:33963844-33963863 None:intergenic 40.0%
GAACCAAACATAGACTGAGT+GGG + chr3_3:33963947-33963966 None:intergenic 40.0%
AGAACCAAACATAGACTGAG+TGG + chr3_3:33963948-33963967 None:intergenic 40.0%
CGTTATACCCTCGTCAAATG+AGG - chr3_3:33955211-33955230 Msa0449600:three_prime_UTR 45.0%
AGACTAATCCTGTTCTGTCG+AGG + chr3_3:33955269-33955288 None:intergenic 45.0%
AGTTCAGGGATCAATCAAGG+TGG + chr3_3:33955330-33955349 None:intergenic 45.0%
TGATCCAACAACTCGCAAAC+AGG - chr3_3:33955563-33955582 Msa0449600:intron 45.0%
GTTACCTGTTTGCGAGTTGT+TGG + chr3_3:33955570-33955589 None:intergenic 45.0%
CTTTCGTGTGTTACGAAGCA+CGG - chr3_3:33955632-33955651 Msa0449600:intron 45.0%
ATGAAGCACGAACACTTCTC+GGG + chr3_3:33955746-33955765 None:intergenic 45.0%
!! GAGAAGTGTTCGTGCTTCAT+AGG - chr3_3:33955746-33955765 Msa0449600:intron 45.0%
AGTCGTTTGATCCATGTAGC+CGG + chr3_3:33955835-33955854 None:intergenic 45.0%
TGATACGACCCAATTCGAGT+AGG - chr3_3:33955972-33955991 Msa0449600:intron 45.0%
GATACGACCCAATTCGAGTA+GGG - chr3_3:33955973-33955992 Msa0449600:intron 45.0%
GTGTGATCCCTACTCGAATT+GGG + chr3_3:33955983-33956002 None:intergenic 45.0%
AGTGTGATCCCTACTCGAAT+TGG + chr3_3:33955984-33956003 None:intergenic 45.0%
CATTGCTAAACCACCTAAGC+TGG - chr3_3:33956325-33956344 Msa0449600:intron 45.0%
AAATGGAAACCCAGCTTAGG+TGG + chr3_3:33956338-33956357 None:intergenic 45.0%
TGTTGTATGAGACGGAGTGT+TGG + chr3_3:33956389-33956408 None:intergenic 45.0%
TTCCGGACCAAAGTCACATT+TGG - chr3_3:33956544-33956563 Msa0449600:intron 45.0%
CTCCAAATGTGACTTTGGTC+CGG + chr3_3:33956549-33956568 None:intergenic 45.0%
CTTGCCTCCAAATGTGACTT+TGG + chr3_3:33956554-33956573 None:intergenic 45.0%
AGAGAGGAACCATAACTGTC+TGG + chr3_3:33956946-33956965 None:intergenic 45.0%
GGTTCCTCTCTTTCAAAGTC+AGG - chr3_3:33956955-33956974 Msa0449600:intron 45.0%
TCAGGAGAATATAGTTGGGG+AGG - chr3_3:33956973-33956992 Msa0449600:intron 45.0%
GGGAAGAAGGTTGAGCATAA+TGG - chr3_3:33957119-33957138 Msa0449600:intron 45.0%
CAAGATAGAGGACGTGATAC+AGG - chr3_3:33958159-33958178 Msa0449600:intron 45.0%
TAGCAGCATATCGTTGTTGG+TGG + chr3_3:33958282-33958301 None:intergenic 45.0%
TGGCTATCTTCTGTCCACTA+AGG + chr3_3:33958655-33958674 None:intergenic 45.0%
! CAATTTTACTACTGTCCCCG+AGG - chr3_3:33959081-33959100 Msa0449600:intron 45.0%
TGAGTTGTCAAATTCCCTCG+GGG + chr3_3:33959099-33959118 None:intergenic 45.0%
! TAGGATCAGGCATTTGGCTT+CGG + chr3_3:33959352-33959371 None:intergenic 45.0%
TTGGGATAGGATCAGGCATT+TGG + chr3_3:33959358-33959377 None:intergenic 45.0%
TCCCATAAATGAGGCGAGAA+AGG - chr3_3:33959567-33959586 Msa0449600:intron 45.0%
TTAGTACATAGGGTTGAGGG+TGG + chr3_3:33959670-33959689 None:intergenic 45.0%
TCTTCGTTCATGAGGACTAG+GGG + chr3_3:33959712-33959731 None:intergenic 45.0%
!! ATCGTTGTCTGCTGACTTGT+TGG - chr3_3:33959892-33959911 Msa0449600:intron 45.0%
!! GACTTGTTGGAGTATACGGA+AGG - chr3_3:33959905-33959924 Msa0449600:intron 45.0%
GAGAGGGCTATATAACTGAC+AGG + chr3_3:33960211-33960230 None:intergenic 45.0%
GTCTTGTCTGATGTGAGTGA+AGG - chr3_3:33960404-33960423 Msa0449600:intron 45.0%
GTACCATGGAGATCTTCTAG+CGG + chr3_3:33960666-33960685 None:intergenic 45.0%
ATCTCCATGGTACGTCTCTA+GGG - chr3_3:33960673-33960692 Msa0449600:intron 45.0%
!! GTGGTTTGTTTAGAGACTCC+TGG - chr3_3:33960696-33960715 Msa0449600:intron 45.0%
! GGTTTGTTTAGAGACTCCTG+GGG - chr3_3:33960698-33960717 Msa0449600:intron 45.0%
AGAATCACACTCCAGCTAGA+GGG + chr3_3:33960802-33960821 None:intergenic 45.0%
TAGAATCACACTCCAGCTAG+AGG + chr3_3:33960803-33960822 None:intergenic 45.0%
AGCACTGCAGATGGTAGTTA+GGG - chr3_3:33960986-33961005 Msa0449600:intron 45.0%
CAGATGGTAGTTAGGGTCTA+AGG - chr3_3:33960993-33961012 Msa0449600:intron 45.0%
! AGAACTAGGGTATCTGTTGC+CGG - chr3_3:33961195-33961214 Msa0449600:intron 45.0%
TTGCCGGAATTTATCATCGC+TGG - chr3_3:33961211-33961230 Msa0449600:intron 45.0%
CGGAATTTATCATCGCTGGA+TGG - chr3_3:33961215-33961234 Msa0449600:intron 45.0%
AATTTGATCCAGGCTTTCGC+AGG - chr3_3:33961396-33961415 Msa0449600:intron 45.0%
AGGAGGGAAGGAAATGACAA+AGG - chr3_3:33961416-33961435 Msa0449600:intron 45.0%
! AACCTAGCCGAATAGCCTTA+AGG - chr3_3:33961736-33961755 Msa0449600:intron 45.0%
! ACCTAGCCGAATAGCCTTAA+GGG - chr3_3:33961737-33961756 Msa0449600:intron 45.0%
CATGGAATCTACCAGACAAC+AGG - chr3_3:33961766-33961785 Msa0449600:intron 45.0%
TTGAAAGGAGGAAGAAGCCA+TGG - chr3_3:33961801-33961820 Msa0449600:intron 45.0%
TTTAGTGACCTCTTCCGATC+AGG + chr3_3:33961885-33961904 None:intergenic 45.0%
! ACCTTTTCTCAATGGTGGCT+AGG - chr3_3:33961933-33961952 Msa0449600:intron 45.0%
TCCTAGCCACCATTGAGAAA+AGG + chr3_3:33961937-33961956 None:intergenic 45.0%
TGAATTTCAGCGTCAGAACC+AGG - chr3_3:33962008-33962027 Msa0449600:intron 45.0%
AGCAGATGACAATCGTGAAC+CGG - chr3_3:33962040-33962059 Msa0449600:intron 45.0%
TTTAGATGTTGAGCTCCCGT+AGG - chr3_3:33962125-33962144 Msa0449600:intron 45.0%
!!! GAGGTTTTAAAAGGGAGAGG+GGG - chr3_3:33962174-33962193 Msa0449600:intron 45.0%
!!! AGGTTTTAAAAGGGAGAGGG+GGG - chr3_3:33962175-33962194 Msa0449600:intron 45.0%
GGCAAGAAGCAGTATATTGG+TGG + chr3_3:33962400-33962419 None:intergenic 45.0%
CTTCTTGCCTGATCATGCTA+TGG - chr3_3:33962411-33962430 Msa0449600:intron 45.0%
CTGTTATTAATCGACGGTGC+TGG + chr3_3:33962576-33962595 None:intergenic 45.0%
!!! AGGTTTTGTTCTGCACTACC+TGG - chr3_3:33962710-33962729 Msa0449600:intron 45.0%
CAGCATGATCAGAGAAACAG+AGG + chr3_3:33962770-33962789 None:intergenic 45.0%
GCCTTTATGCAGATGGAAGT+AGG - chr3_3:33962795-33962814 Msa0449600:intron 45.0%
CCATCAACTCAAACTTCGCA+AGG + chr3_3:33963092-33963111 None:intergenic 45.0%
!! CCTTGCGAAGTTTGAGTTGA+TGG - chr3_3:33963089-33963108 Msa0449600:intron 45.0%
!! GCGAAGTTTGAGTTGATGGA+TGG - chr3_3:33963093-33963112 Msa0449600:intron 45.0%
!! ATAAAGGGGCACTCAATGAC+AGG - chr3_3:33963310-33963329 Msa0449600:intron 45.0%
!! TAAAGGGGCACTCAATGACA+GGG - chr3_3:33963311-33963330 Msa0449600:intron 45.0%
CTTGAGCTCAATTGCTTGGT+TGG + chr3_3:33963379-33963398 None:intergenic 45.0%
ACCAAGCAATTGAGCTCAAG+TGG - chr3_3:33963379-33963398 Msa0449600:intron 45.0%
ACCACTTGAGCTCAATTGCT+TGG + chr3_3:33963383-33963402 None:intergenic 45.0%
!!! CCTGGCTTTTTGAGGTTTGA+TGG + chr3_3:33963415-33963434 None:intergenic 45.0%
CCATCAAACCTCAAAAAGCC+AGG - chr3_3:33963412-33963431 Msa0449600:intron 45.0%
AAACCTCAAAAAGCCAGGCT+AGG - chr3_3:33963417-33963436 Msa0449600:intron 45.0%
AGTCCCACTCAGTCTATGTT+TGG - chr3_3:33963941-33963960 Msa0449600:five_prime_UTR 45.0%
!! TATTATATATTAGATTTATA+TGG - chr3_3:33962335-33962354 Msa0449600:intron 5.0%
!!! TTTAAAATTTTAAAATTAAC+AGG - chr3_3:33962932-33962951 Msa0449600:intron 5.0%
CTCGCAAACAGGTAACTGTG+AGG - chr3_3:33955574-33955593 Msa0449600:intron 50.0%
GCAAACAGGTAACTGTGAGG+TGG - chr3_3:33955577-33955596 Msa0449600:intron 50.0%
TGTGTTACGAAGCACGGACA+CGG - chr3_3:33955638-33955657 Msa0449600:intron 50.0%
CGTTGTGAAAACCGGCTACA+TGG - chr3_3:33955821-33955840 Msa0449600:intron 50.0%
CGGACCAAAGTCACATTTGG+AGG - chr3_3:33956547-33956566 Msa0449600:intron 50.0%
AGAACCTGTACGTGGGAAGA+AGG - chr3_3:33957106-33957125 Msa0449600:intron 50.0%
TCAACCTTCTTCCCACGTAC+AGG + chr3_3:33957113-33957132 None:intergenic 50.0%
CATCATGAAGGTCCCAGCAT+AGG + chr3_3:33957813-33957832 None:intergenic 50.0%
GTACGCGAACTTGATGTTCC+TGG - chr3_3:33957863-33957882 Msa0449600:intron 50.0%
GATAGAGGACGTGATACAGG+AGG - chr3_3:33958162-33958181 Msa0449600:intron 50.0%
CATAGACTCAGTCCCTTGAG+AGG - chr3_3:33959117-33959136 Msa0449600:intron 50.0%
! TCAGGCATTTGGCTTCGGTT+AGG + chr3_3:33959347-33959366 None:intergenic 50.0%
! TGAGGGGGAGTGTGGAAATA+TGG + chr3_3:33959833-33959852 None:intergenic 50.0%
CAAAAAGACACACGGACGGA+TGG - chr3_3:33960638-33960657 Msa0449600:intron 50.0%
GATCTCCATGGTACGTCTCT+AGG - chr3_3:33960672-33960691 Msa0449600:intron 50.0%
TCTCCATGGTACGTCTCTAG+GGG - chr3_3:33960674-33960693 Msa0449600:intron 50.0%
!! GAGAGACCCTGAAAAGCATC+TGG + chr3_3:33960911-33960930 None:intergenic 50.0%
CAGCACTGCAGATGGTAGTT+AGG - chr3_3:33960985-33961004 Msa0449600:intron 50.0%
! ATCTAGAGCTGGTCAGGTTC+TGG - chr3_3:33961300-33961319 Msa0449600:CDS 50.0%
! GCTGGTCAGGTTCTGGTAAA+CGG - chr3_3:33961307-33961326 Msa0449600:CDS 50.0%
AATATACACCATAGCCCGGC+AGG - chr3_3:33961555-33961574 Msa0449600:intron 50.0%
ATATACACCATAGCCCGGCA+GGG - chr3_3:33961556-33961575 Msa0449600:intron 50.0%
TAGACACGACTGTAGGACGT+GGG + chr3_3:33961629-33961648 None:intergenic 50.0%
ATAGACACGACTGTAGGACG+TGG + chr3_3:33961630-33961649 None:intergenic 50.0%
TCCCTTAAGGCTATTCGGCT+AGG + chr3_3:33961741-33961760 None:intergenic 50.0%
CCCTCTCCCTTAAGGCTATT+CGG + chr3_3:33961746-33961765 None:intergenic 50.0%
! CCGAATAGCCTTAAGGGAGA+GGG - chr3_3:33961743-33961762 Msa0449600:intron 50.0%
ATTCCATGCCCTCTCCCTTA+AGG + chr3_3:33961754-33961773 None:intergenic 50.0%
GAATCTACCAGACAACAGGG+AGG - chr3_3:33961770-33961789 Msa0449600:intron 50.0%
CTCGACCACGATAACCTGAT+CGG - chr3_3:33961868-33961887 Msa0449600:intron 50.0%
CTCTTCCGATCAGGTTATCG+TGG + chr3_3:33961876-33961895 None:intergenic 50.0%
CACGATAACCTGATCGGAAG+AGG - chr3_3:33961874-33961893 Msa0449600:intron 50.0%
AAGGGACAAATTGTTGCCGC+TGG + chr3_3:33961965-33961984 None:intergenic 50.0%
TTTGTCCCTTGCCACGATTC+AGG - chr3_3:33961975-33961994 Msa0449600:intron 50.0%
TATGGCCTGAATCGTGGCAA+GGG + chr3_3:33961983-33962002 None:intergenic 50.0%
ATCCACTATGGCCTGAATCG+TGG + chr3_3:33961989-33962008 None:intergenic 50.0%
TCACGATTGTCATCTGCTCC+TGG + chr3_3:33962038-33962057 None:intergenic 50.0%
AGGAAATGCAAACCTCGGAC+TGG + chr3_3:33963123-33963142 None:intergenic 50.0%
AAGCCAGGCTAGGCTCTTTA+AGG - chr3_3:33963427-33963446 Msa0449600:intron 50.0%
AGTCCTTAAAGAGCCTAGCC+TGG + chr3_3:33963433-33963452 None:intergenic 50.0%
! CTTGCTGCTTGAAGTAGCGT+CGG + chr3_3:33963791-33963810 None:intergenic 50.0%
GCTCACATCCTCGACAGAAC+AGG - chr3_3:33955258-33955277 Msa0449600:three_prime_UTR 55.0%
GTGTTACGAAGCACGGACAC+GGG - chr3_3:33955639-33955658 Msa0449600:intron 55.0%
GCACGAACACTTCTCGGGTT+AGG + chr3_3:33955741-33955760 None:intergenic 55.0%
GAGCCGCTAGAAGATCTCCA+TGG - chr3_3:33960660-33960679 Msa0449600:intron 55.0%
! GACTCCTGGGGCACTATTCT+TGG - chr3_3:33960710-33960729 Msa0449600:intron 55.0%
ACAGCCAAGAATAGTGCCCC+AGG + chr3_3:33960717-33960736 None:intergenic 55.0%
GGGCGCACAGGTATCACAAA+AGG + chr3_3:33961044-33961063 None:intergenic 55.0%
TAAAGGCTAATGGGGCGCAC+AGG + chr3_3:33961056-33961075 None:intergenic 55.0%
TTGATCCAGGCTTTCGCAGG+AGG - chr3_3:33961399-33961418 Msa0449600:intron 55.0%
TGATCCAGGCTTTCGCAGGA+GGG - chr3_3:33961400-33961419 Msa0449600:intron 55.0%
TCAAGCCTTCTAGTCCCTGC+CGG + chr3_3:33961573-33961592 None:intergenic 55.0%
! GCCGAATAGCCTTAAGGGAG+AGG - chr3_3:33961742-33961761 Msa0449600:intron 55.0%
! TAGCCTTAAGGGAGAGGGCA+TGG - chr3_3:33961748-33961767 Msa0449600:intron 55.0%
TACCAGACAACAGGGAGGCA+GGG - chr3_3:33961775-33961794 Msa0449600:intron 55.0%
AGGTTATCGTGGTCGAGGCA+GGG + chr3_3:33961865-33961884 None:intergenic 55.0%
CGATCAGGTTATCGTGGTCG+AGG + chr3_3:33961870-33961889 None:intergenic 55.0%
CTATGGCCTGAATCGTGGCA+AGG + chr3_3:33961984-33962003 None:intergenic 55.0%
TGCCACGATTCAGGCCATAG+TGG - chr3_3:33961984-33962003 Msa0449600:intron 55.0%
AGATGTTGAGCTCCCGTAGG+AGG - chr3_3:33962128-33962147 Msa0449600:intron 55.0%
!! ATCAGGCGTCGAGAGTCTAC+CGG - chr3_3:33963033-33963052 Msa0449600:intron 55.0%
GTCGAGAGTCTACCGGATCA+GGG - chr3_3:33963040-33963059 Msa0449600:intron 55.0%
ATGGATGGTGTTCCAGTCCG+AGG - chr3_3:33963108-33963127 Msa0449600:intron 55.0%
!! GAGCCTAGCCTGGCTTTTTG+AGG + chr3_3:33963423-33963442 None:intergenic 55.0%
TCCACACTCCCCCTCAAGCT+AGG - chr3_3:33959837-33959856 Msa0449600:intron 60.0%
TCCTAGCTTGAGGGGGAGTG+TGG + chr3_3:33959841-33959860 None:intergenic 60.0%
CCACCCCTAGAGACGTACCA+TGG + chr3_3:33960680-33960699 None:intergenic 60.0%
! CCATGGTACGTCTCTAGGGG+TGG - chr3_3:33960677-33960696 Msa0449600:intron 60.0%
AGGGTGGTACTCCCTCTAGC+TGG - chr3_3:33960788-33960807 Msa0449600:intron 60.0%
TTCTAGTCCCTGCCGGGCTA+TGG + chr3_3:33961566-33961585 None:intergenic 60.0%
ATAGCCCGGCAGGGACTAGA+AGG - chr3_3:33961565-33961584 Msa0449600:intron 60.0%
CAAGCCTTCTAGTCCCTGCC+GGG + chr3_3:33961572-33961591 None:intergenic 60.0%
CTACCAGACAACAGGGAGGC+AGG - chr3_3:33961774-33961793 Msa0449600:intron 60.0%
ACCAGACAACAGGGAGGCAG+GGG - chr3_3:33961776-33961795 Msa0449600:intron 60.0%
CAGGTTATCGTGGTCGAGGC+AGG + chr3_3:33961866-33961885 None:intergenic 60.0%
GGTGGCTAGGAATCAGCCAG+CGG - chr3_3:33961946-33961965 Msa0449600:intron 60.0%
! TCATCTGCTCCTGGAGTGCC+TGG + chr3_3:33962029-33962048 None:intergenic 60.0%
AGGGAGAGGGGGGTTCAGAT+TGG - chr3_3:33962185-33962204 Msa0449600:intron 60.0%
GGGAGAGGGGGGTTCAGATT+GGG - chr3_3:33962186-33962205 Msa0449600:intron 60.0%
CGTCGAGAGTCTACCGGATC+AGG - chr3_3:33963039-33963058 Msa0449600:intron 60.0%
CACGGACACGGGACACGACA+CGG - chr3_3:33955650-33955669 Msa0449600:intron 65.0%
GGTTAGGCGTGTCCCCGTGT+CGG + chr3_3:33955725-33955744 None:intergenic 65.0%
CCTTCCCTCCTGCGAAAGCC+TGG + chr3_3:33961407-33961426 None:intergenic 65.0%
CCAGGCTTTCGCAGGAGGGA+AGG - chr3_3:33961404-33961423 Msa0449600:intron 65.0%
CCAGACAACAGGGAGGCAGG+GGG - chr3_3:33961777-33961796 Msa0449600:intron 65.0%
AGGGAGGCAGGGGGCTTGAA+AGG - chr3_3:33961786-33961805 Msa0449600:intron 65.0%
GAGGCAGGGGGCTTGAAAGG+AGG - chr3_3:33961789-33961808 Msa0449600:intron 65.0%
GCGTCAGAACCAGGCACTCC+AGG - chr3_3:33962017-33962036 Msa0449600:intron 65.0%
CCCCCTGCCTCCCTGTTGTC+TGG + chr3_3:33961780-33961799 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 33955126 33964066 33955126 ID=Msa0449600;Name=Msa0449600
chr3_3 mRNA 33955126 33964066 33955126 ID=Msa0449600-mRNA-1;Parent=Msa0449600;Name=Msa0449600-mRNA-1;_AED=0.13;_eAED=0.13;_QI=307|0.8|0.90|1|0.6|0.63|11|199|273
chr3_3 exon 33955126 33955279 33955126 ID=Msa0449600-mRNA-1:exon:6052;Parent=Msa0449600-mRNA-1
chr3_3 exon 33955302 33955525 33955302 ID=Msa0449600-mRNA-1:exon:6051;Parent=Msa0449600-mRNA-1
chr3_3 exon 33956063 33956238 33956063 ID=Msa0449600-mRNA-1:exon:6050;Parent=Msa0449600-mRNA-1
chr3_3 exon 33956330 33956385 33956330 ID=Msa0449600-mRNA-1:exon:6049;Parent=Msa0449600-mRNA-1
chr3_3 exon 33956590 33956634 33956590 ID=Msa0449600-mRNA-1:exon:6048;Parent=Msa0449600-mRNA-1
chr3_3 exon 33960273 33960339 33960273 ID=Msa0449600-mRNA-1:exon:6047;Parent=Msa0449600-mRNA-1
chr3_3 exon 33961228 33961328 33961228 ID=Msa0449600-mRNA-1:exon:6046;Parent=Msa0449600-mRNA-1
chr3_3 exon 33961644 33961688 33961644 ID=Msa0449600-mRNA-1:exon:6045;Parent=Msa0449600-mRNA-1
chr3_3 exon 33962198 33962272 33962198 ID=Msa0449600-mRNA-1:exon:6044;Parent=Msa0449600-mRNA-1
chr3_3 exon 33963608 33963682 33963608 ID=Msa0449600-mRNA-1:exon:6043;Parent=Msa0449600-mRNA-1
chr3_3 exon 33963757 33964066 33963757 ID=Msa0449600-mRNA-1:exon:6042;Parent=Msa0449600-mRNA-1
chr3_3 five_prime_UTR 33963760 33964066 33963760 ID=Msa0449600-mRNA-1:five_prime_utr;Parent=Msa0449600-mRNA-1
chr3_3 CDS 33963757 33963759 33963757 ID=Msa0449600-mRNA-1:cds;Parent=Msa0449600-mRNA-1
chr3_3 CDS 33963608 33963682 33963608 ID=Msa0449600-mRNA-1:cds;Parent=Msa0449600-mRNA-1
chr3_3 CDS 33962198 33962272 33962198 ID=Msa0449600-mRNA-1:cds;Parent=Msa0449600-mRNA-1
chr3_3 CDS 33961644 33961688 33961644 ID=Msa0449600-mRNA-1:cds;Parent=Msa0449600-mRNA-1
chr3_3 CDS 33961228 33961328 33961228 ID=Msa0449600-mRNA-1:cds;Parent=Msa0449600-mRNA-1
chr3_3 CDS 33960273 33960339 33960273 ID=Msa0449600-mRNA-1:cds;Parent=Msa0449600-mRNA-1
chr3_3 CDS 33956590 33956634 33956590 ID=Msa0449600-mRNA-1:cds;Parent=Msa0449600-mRNA-1
chr3_3 CDS 33956330 33956385 33956330 ID=Msa0449600-mRNA-1:cds;Parent=Msa0449600-mRNA-1
chr3_3 CDS 33956063 33956238 33956063 ID=Msa0449600-mRNA-1:cds;Parent=Msa0449600-mRNA-1
chr3_3 CDS 33955347 33955525 33955347 ID=Msa0449600-mRNA-1:cds;Parent=Msa0449600-mRNA-1
chr3_3 three_prime_UTR 33955302 33955346 33955302 ID=Msa0449600-mRNA-1:three_prime_utr;Parent=Msa0449600-mRNA-1
chr3_3 three_prime_UTR 33955126 33955279 33955126 ID=Msa0449600-mRNA-1:three_prime_utr;Parent=Msa0449600-mRNA-1
Gene Sequence

>Msa0449600

ATGAATATAATTGCTGGAGCTTTCAAGCCTCCTTGCAAAATTTCAATCTCTTTAACTGATCCAACAACTCGCAAACAGGTTCGCGTGAAGAAGGAAAATGACCAGACAGTTATGGTTCCTCTCTTTCAAAGTCAGGAGAATATAGTTGGGGAGAATTGTACTTTGACAGAGGCAGCTTCTATGACTTTACTTCTCTTGTACGCGAACTTGATGTTCCTGGAAATTTATATGAAAAGAAAACTTACCCATTTGAGTTCTCCACTGTTGAAATGCCACATGAATCCTACAATGGGATCAATGTATGTTTTGAAAGTGACAATTAGTCGAAATTTTGTCAACAACATTGTGGAACACATGGATTTTGTAGTACGCAATTACATTCCAGCACCGTCGATTAATAACAGCATTAAGATGGAAGTAGGAATTGAAGACTGCTTACACATAGAGTTTGAATACAGTAAAAGCAAGTATCATCTGAAGGATGTTGTCATTGGCAAAATATACTTTTTACTGGTGAGAATCAAATTAAAAAACATGGAACTTGAAATCAGGCGTCGAGAGTCTACCGGATCAGGGACCAATACATATGTTGAAACGGAGACCCTTGCGAAGTTTGAGTTGATGGATGGTGTTCCAGTCCGAGGAGAATCTATTCCTATCAGATTATTTCTCAATCCATATGAGTTGACACCAACATATCACAATATCAACAACAAGTTCAGCGTGAAGTATTTTCTAAATCTTGTTTTTGTGGATGACGAAAACCGACGCTACTTCAAGCAGCAAGAAATCATAGTTTATCGCCTTCTTGAAGACTCCTGA

Protein sequence

>Msa0449600

MNIIAGAFKPPCKISISLTDPTTRKQVRVKKENDQTVMVPLFQSQENIVGENCTLTEAASMTLLLLYANLMFLEIYMKRKLTHLSSPLLKCHMNPTMGSMYVLKVTISRNFVNNIVEHMDFVVRNYIPAPSINNSIKMEVGIEDCLHIEFEYSKSKYHLKDVVIGKIYFLLVRIKLKNMELEIRRRESTGSGTNTYVETETLAKFELMDGVPVRGESIPIRLFLNPYELTPTYHNINNKFSVKYFLNLVFVDDENRRYFKQQEIIVYRLLEDS*