AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1427760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427760 MtrunA17_Chr2g0322881 27.812 320 184 11 57 341 261 568 1.65e-21 97.4
Msa1427760 MtrunA17_Chr4g0039731 30.000 230 149 6 124 350 187 407 5.94e-21 95.9
Msa1427760 MtrunA17_Chr8g0345501 29.358 218 150 3 121 338 427 640 4.70e-20 92.8
Msa1427760 MtrunA17_Chr7g0231401 27.414 321 184 12 57 341 204 511 3.43e-19 90.1
Msa1427760 MtrunA17_Chr3g0086081 30.417 240 140 7 122 350 4 227 1.11e-18 87.0
Msa1427760 MtrunA17_Chr4g0025081 31.098 164 89 5 188 338 321 473 8.07e-12 67.0
Msa1427760 MtrunA17_Chr1g0176161 26.457 223 141 7 194 402 254 467 2.85e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 104 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGGACTTATACTCTTAA+AGG 0.141846 tig0026221:-39354 Msa1427760:CDS
AGTATAATTTGAATATTTAT+TGG 0.149686 tig0026221:+37232 Msa1427760:intergenic
AAATATAGATTTGGATTTAA+TGG 0.180402 tig0026221:-37081 Msa1427760:CDS
ATCTTACTGATAACAAAATT+TGG 0.184703 tig0026221:-39371 Msa1427760:CDS
TATTTCCTCAACACCTAAAA+TGG 0.217388 tig0026221:+36908 Msa1427760:intergenic
GAGAGGTTGAGGCGCGTTTA+AGG 0.254606 tig0026221:-37187 Msa1427760:CDS
AATGCAAAGGGTAGAGTATA+TGG 0.262241 tig0026221:-37302 Msa1427760:CDS
GTGAACAGGAGGCAACTATT+AGG 0.318451 tig0026221:-38973 Msa1427760:CDS
TTAGTTGATTCTTAGATCCT+TGG 0.322858 tig0026221:+38750 Msa1427760:intergenic
TTCATTTGCTTTGAACTAGA+AGG 0.324162 tig0026221:+39660 Msa1427760:intergenic
TTGATGGCCCTTACAACAAT+TGG 0.340569 tig0026221:-39157 Msa1427760:CDS
GCAATTAAATCTATCTTTGA+TGG 0.347315 tig0026221:-39173 Msa1427760:CDS
TAAACATGCAAATATAGATT+TGG 0.354681 tig0026221:-37090 Msa1427760:CDS
ACAAACAATCGATTCCATTA+AGG 0.358541 tig0026221:-37144 Msa1427760:CDS
AAAGGTTTGTGACCCCTTCC+TGG 0.359594 tig0026221:+38571 Msa1427760:intergenic
CAACATTTCCAATTGTTGTA+AGG 0.366988 tig0026221:+39149 Msa1427760:intergenic
CACAGCTTCAGTAATCCATT+TGG 0.367414 tig0026221:+38874 Msa1427760:intergenic
CTACAAATGGATTGGTGAAC+AGG 0.367995 tig0026221:-38987 Msa1427760:CDS
TAGTTGATTCTTAGATCCTT+GGG 0.378840 tig0026221:+38751 Msa1427760:intergenic
ACTAAAGCATGAACTTGAAT+TGG 0.381714 tig0026221:-38732 Msa1427760:intron
TTTGGAGACCCTACCTTACC+TGG 0.413801 tig0026221:-39426 Msa1427760:intron
TAGAGTATATGGGCTTGGTT+TGG 0.416967 tig0026221:-37291 Msa1427760:CDS
ACAGCTTCAGTAATCCATTT+GGG 0.422196 tig0026221:+38875 Msa1427760:intergenic
TGAACAGGAGGCAACTATTA+GGG 0.425593 tig0026221:-38972 Msa1427760:CDS
GGATCTACTAAGAAAGATAA+TGG 0.430569 tig0026221:-38927 Msa1427760:CDS
ACATCAACATCACTAATGTT+TGG 0.448307 tig0026221:+39982 Msa1427760:intergenic
ATTAGTGTATCATAATCAAT+AGG 0.448901 tig0026221:+37347 Msa1427760:intergenic
CTAAACAAGTGCAGAACAAA+AGG 0.449735 tig0026221:-38640 Msa1427760:intron
AAGAAATGTGGTTTAATGAG+TGG 0.455343 tig0026221:-39112 Msa1427760:CDS
TGAGTCTCAACCTCATCCTT+TGG 0.456749 tig0026221:-37405 Msa1427760:CDS
TATTGATGGTTTATGAATGT+AGG 0.459697 tig0026221:-36978 Msa1427760:three_prime_UTR
ATGTGGAAGAATAATATTGA+TGG 0.474708 tig0026221:-36992 Msa1427760:exon
TGGAAAATTTAAAGTCAGCT+AGG 0.476622 tig0026221:-40005 Msa1427760:CDS
GTCTCAACCTCATCCTTTGG+AGG 0.479026 tig0026221:-37402 Msa1427760:CDS
GGATTTAGACGTTGAGCCAC+GGG 0.479351 tig0026221:+37253 Msa1427760:intergenic
TTTATGTTGCAGTTTATTTG+TGG 0.479576 tig0026221:-40025 Msa1427760:intron
CATGGTAGATGTGGATTATG+AGG 0.479970 tig0026221:+39402 Msa1427760:intergenic
AACATTTCCAATTGTTGTAA+GGG 0.485748 tig0026221:+39150 Msa1427760:intergenic
TCTTTAGTCTCATTATCATC+AGG 0.486034 tig0026221:+39206 Msa1427760:intergenic
CAACCTCATCCTTTGGAGGC+TGG 0.487170 tig0026221:-37398 Msa1427760:CDS
CAAGTGCAGAACAAAAGGTT+AGG 0.488681 tig0026221:-38635 Msa1427760:intron
AAGGGTAGAGTATATGGGCT+TGG 0.493623 tig0026221:-37296 Msa1427760:CDS
TTGCTTTGAACTAGAAGGAA+TGG 0.493785 tig0026221:+39665 Msa1427760:intergenic
TGTATCATAATCAATAGGCT+TGG 0.504722 tig0026221:+37352 Msa1427760:intergenic
GTATCATAATCAATAGGCTT+GGG 0.509867 tig0026221:+37353 Msa1427760:intergenic
GGCACAACTGCTTGCAATGT+GGG 0.510450 tig0026221:-38849 Msa1427760:CDS
ACTTCTAAGAATGCTCATCT+TGG 0.513983 tig0026221:-39705 Msa1427760:CDS
TGGTATGAGTGGAGAGGTTG+AGG 0.514731 tig0026221:-37198 Msa1427760:CDS
GTATATGGGCTTGGTTTGGA+TGG 0.514998 tig0026221:-37287 Msa1427760:CDS
ACACTTGGATTACTTGATGA+TGG 0.518327 tig0026221:+39600 Msa1427760:intergenic
GGAATGGACGGAGTAGGAGC+AGG 0.520358 tig0026221:+39681 Msa1427760:intergenic
ATGCAAAGGGTAGAGTATAT+GGG 0.526831 tig0026221:-37301 Msa1427760:CDS
ACACTAATGATTGAAGCTGT+TGG 0.537396 tig0026221:-37332 Msa1427760:CDS
TGGATTATGAGGACCAGGTA+AGG 0.541884 tig0026221:+39413 Msa1427760:intergenic
ACTTCTAAGAATGCTCCTCT+TGG 0.544827 tig0026221:-39636 Msa1427760:CDS
TTAAACAGTTCTCCCTTGTG+TGG 0.548626 tig0026221:+38605 Msa1427760:intergenic
GATGGCAGCATGCGCACCCG+TGG 0.550034 tig0026221:-37269 Msa1427760:CDS
TCATAATCCACATCTACCAT+GGG 0.554449 tig0026221:-39400 Msa1427760:CDS
GGATTACTTGATGATGGAGT+AGG 0.554465 tig0026221:+39606 Msa1427760:intergenic
AGAAATGTGGTTTAATGAGT+GGG 0.554860 tig0026221:-39111 Msa1427760:CDS
CTAATGATTGAAGCTGTTGG+AGG 0.555236 tig0026221:-37329 Msa1427760:CDS
ATTTGCATGTTTAGCAAATG+CGG 0.555380 tig0026221:+37100 Msa1427760:intergenic
TTATGAGGACCAGGTAAGGT+AGG 0.556837 tig0026221:+39417 Msa1427760:intergenic
CTCATAATCCACATCTACCA+TGG 0.559160 tig0026221:-39401 Msa1427760:CDS
TGCAAATGTTGGTGCTGATG+TGG 0.559498 tig0026221:-37009 Msa1427760:CDS
TGGATTTAGACGTTGAGCCA+CGG 0.559998 tig0026221:+37252 Msa1427760:intergenic
AGGCAACTATTAGGGCCACA+TGG 0.561815 tig0026221:-38964 Msa1427760:CDS
AGTAATCGTGATTCAGATGT+CGG 0.565082 tig0026221:-38788 Msa1427760:CDS
CACATGGGAATCAAAAGCTA+AGG 0.571102 tig0026221:-38948 Msa1427760:CDS
AGTTGATCTCTTATCAACAA+AGG 0.578886 tig0026221:+38553 Msa1427760:intergenic
ATGATAAAATAAAAGAAATG+TGG 0.580085 tig0026221:-39124 Msa1427760:CDS
AGATGTGGATTATGAGGACC+AGG 0.582788 tig0026221:+39408 Msa1427760:intergenic
TCTTTGCCCCATGGTAGATG+TGG 0.589105 tig0026221:+39393 Msa1427760:intergenic
GGAGGTTCATTGCACACCCA+AGG 0.595430 tig0026221:-38767 Msa1427760:CDS
CTAGAAGGAATGGACGGAGT+AGG 0.598666 tig0026221:+39675 Msa1427760:intergenic
TTACCAGCCTCCAAAGGATG+AGG 0.600248 tig0026221:+37395 Msa1427760:intergenic
TCAGTAAGATCTTTGCCCCA+TGG 0.601559 tig0026221:+39384 Msa1427760:intergenic
GGCAACTATTAGGGCCACAT+GGG 0.615938 tig0026221:-38963 Msa1427760:CDS
CGTGGAAGCAATGCAAATGT+TGG 0.616233 tig0026221:-37020 Msa1427760:CDS
TCATCATTACCAGCCTCCAA+AGG 0.621367 tig0026221:+37389 Msa1427760:intergenic
TATGAGGACCAGGTAAGGTA+GGG 0.624093 tig0026221:+39418 Msa1427760:intergenic
TTAGTGATGTTGATGTTGAT+CGG 0.628186 tig0026221:-39975 Msa1427760:CDS
TGAGACTAAAGATATATCGA+AGG 0.629921 tig0026221:-39195 Msa1427760:CDS
TGTTGGAGGAAGAAATGCAA+AGG 0.632509 tig0026221:-37315 Msa1427760:CDS
GATATTGCACGTGGTATGAG+TGG 0.632896 tig0026221:-37209 Msa1427760:CDS
ATGGATTACTGAAGCTGTGT+GGG 0.633622 tig0026221:-38870 Msa1427760:CDS
TCTGTTGATAATGCTACTCG+TGG 0.635589 tig0026221:-37038 Msa1427760:CDS
GTTGGAGGAAGAAATGCAAA+GGG 0.639504 tig0026221:-37314 Msa1427760:CDS
CAAATGGATTGGTGAACAGG+AGG 0.645056 tig0026221:-38984 Msa1427760:CDS
GGGCACAACTGCTTGCAATG+TGG 0.649810 tig0026221:-38850 Msa1427760:CDS
GTTAGGAAGAATTCCACACA+AGG 0.649819 tig0026221:-38618 Msa1427760:CDS
TTTGAACTAGAAGGAATGGA+CGG 0.669438 tig0026221:+39669 Msa1427760:intergenic
TTACATTACAAATAGATGTG+TGG 0.670020 tig0026221:-38816 Msa1427760:CDS
AATGTGGTTTAATGAGTGGG+CGG 0.677211 tig0026221:-39108 Msa1427760:intron
AATTATACTGATATTGCACG+TGG 0.677934 tig0026221:-37218 Msa1427760:CDS
TCGAAAATGAATTTCCAGAG+TGG 0.681641 tig0026221:-39948 Msa1427760:CDS
GGAGTAGGAATAGTACCAAG+AGG 0.690068 tig0026221:+39621 Msa1427760:intergenic
AATCGTGATTCAGATGTCGG+AGG 0.698344 tig0026221:-38785 Msa1427760:CDS
GCACAACTGCTTGCAATGTG+GGG 0.699767 tig0026221:-38848 Msa1427760:CDS
AATGGATTACTGAAGCTGTG+TGG 0.699938 tig0026221:-38871 Msa1427760:CDS
TGCACGTGGTATGAGTGGAG+AGG 0.729243 tig0026221:-37204 Msa1427760:CDS
CATAATCCACATCTACCATG+GGG 0.749956 tig0026221:-39399 Msa1427760:CDS
GAGGCTGGTAATGATGAGAG+TGG 0.750491 tig0026221:-37383 Msa1427760:CDS
TTAGGAAGAATTCCACACAA+GGG 0.761441 tig0026221:-38617 Msa1427760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATATATATTAAATTTT+TGG - tig0026221:40678-40697 Msa1427760:intron 0.0%
!!! TAAATATATATTAAATTTTT+GGG - tig0026221:40679-40698 Msa1427760:intron 0.0%
!! AATAATATAACTTATACAAA+TGG - tig0026221:37389-37408 Msa1427760:CDS 10.0%
!! AGTATAATTTGAATATTTAT+TGG + tig0026221:40208-40227 Msa1427760:intergenic 10.0%
!! ATGATAAAATAAAAGAAATG+TGG - tig0026221:38313-38332 Msa1427760:intron 15.0%
!! AATAACTGAATAAATAAGAT+AGG + tig0026221:39972-39991 Msa1427760:intergenic 15.0%
!! AAATATAGATTTGGATTTAA+TGG - tig0026221:40356-40375 Msa1427760:intron 15.0%
!!! ATTAAAACTTTAACCATTTT+AGG - tig0026221:40516-40535 Msa1427760:intron 15.0%
!!! TTGATAATTGTTGTTATTTT+TGG - tig0026221:40554-40573 Msa1427760:intron 15.0%
!!! GTATTTTTGTTTTCATGTAA+AGG - tig0026221:36829-36848 Msa1427760:three_prime_UTR 20.0%
!! CTTCAATTTATAATCCAAAA+GGG + tig0026221:36892-36911 Msa1427760:intergenic 20.0%
!! ACTTCAATTTATAATCCAAA+AGG + tig0026221:36893-36912 Msa1427760:intergenic 20.0%
!!! ACATTTTAGCTTAAAATTAG+TGG + tig0026221:36976-36995 Msa1427760:intergenic 20.0%
!!! ACATTTTTTCTTTTGTTCAT+TGG + tig0026221:37124-37143 Msa1427760:intergenic 20.0%
!! GAAATTGAAGAAAATTAAAG+AGG + tig0026221:37180-37199 Msa1427760:intergenic 20.0%
!!! ATATCAATTTTTAATCAACC+TGG - tig0026221:37217-37236 Msa1427760:CDS 20.0%
!! ATCTTACTGATAACAAAATT+TGG - tig0026221:38066-38085 Msa1427760:intron 20.0%
!! TTTCTGCAATTATTGAAAAT+GGG + tig0026221:38428-38447 Msa1427760:intergenic 20.0%
!!! TTTTCTGCAATTATTGAAAA+TGG + tig0026221:38429-38448 Msa1427760:intergenic 20.0%
!! ATGCATATAATATCAACAAT+TGG - tig0026221:39165-39184 Msa1427760:CDS 20.0%
!! TGAATATCAATGAAATCAAA+GGG + tig0026221:39473-39492 Msa1427760:intergenic 20.0%
!! ATGAATATCAATGAAATCAA+AGG + tig0026221:39474-39493 Msa1427760:intergenic 20.0%
!! TTGTTTGACAGATATATTAT+CGG - tig0026221:39687-39706 Msa1427760:CDS 20.0%
!! ATTAGTGTATCATAATCAAT+AGG + tig0026221:40093-40112 Msa1427760:intergenic 20.0%
!! TAAACATGCAAATATAGATT+TGG - tig0026221:40347-40366 Msa1427760:intron 20.0%
!!! TAATTGTTGTTATTTTTGGA+TGG - tig0026221:40558-40577 Msa1427760:intron 20.0%
!! TAATACTGGTGTATGATTTT+AGG - tig0026221:36778-36797 Msa1427760:three_prime_UTR 25.0%
!! TTTAAAACTTTATGGCAAAC+AGG + tig0026221:36928-36947 Msa1427760:intergenic 25.0%
!! CATGTGCATTTAAAACTTTA+TGG + tig0026221:36936-36955 Msa1427760:intergenic 25.0%
! ATATCATTGCATTTATTTGC+TGG + tig0026221:37028-37047 Msa1427760:intergenic 25.0%
!! CTTTTATGATAGCTAAAAAG+TGG - tig0026221:37150-37169 Msa1427760:CDS 25.0%
!! TGTACTTTTAAATTGTGAAG+AGG - tig0026221:37306-37325 Msa1427760:CDS 25.0%
! TTTGATACTATAAAGCTACT+AGG + tig0026221:37363-37382 Msa1427760:intergenic 25.0%
! TTTATGTTGCAGTTTATTTG+TGG - tig0026221:37412-37431 Msa1427760:CDS 25.0%
!! TCTTCTCTGTTTTATCAAAT+AGG - tig0026221:37585-37604 Msa1427760:intron 25.0%
! AAGCAATGTTAAGTATAAAC+TGG + tig0026221:37639-37658 Msa1427760:intergenic 25.0%
! AGTTTATACTTAACATTGCT+TGG - tig0026221:37638-37657 Msa1427760:intron 25.0%
! GTTTATACTTAACATTGCTT+GGG - tig0026221:37639-37658 Msa1427760:intron 25.0%
! TTTATACTTAACATTGCTTG+GGG - tig0026221:37640-37659 Msa1427760:intron 25.0%
! TAGCCATTGACAAAATAAAT+AGG + tig0026221:37691-37710 Msa1427760:intergenic 25.0%
! TCATTATCTTCTTATGTTTG+TGG + tig0026221:37960-37979 Msa1427760:intergenic 25.0%
! ATTTGGACTTATACTCTTAA+AGG - tig0026221:38083-38102 Msa1427760:intron 25.0%
! GTTAATTCATGTGTTGAATT+TGG - tig0026221:38198-38217 Msa1427760:intron 25.0%
! GCAATTAAATCTATCTTTGA+TGG - tig0026221:38264-38283 Msa1427760:intron 25.0%
! AACATTTCCAATTGTTGTAA+GGG + tig0026221:38290-38309 Msa1427760:intergenic 25.0%
! AATTGCAGAAAAACTACAAA+TGG - tig0026221:38437-38456 Msa1427760:intron 25.0%
! TTACATTACAAATAGATGTG+TGG - tig0026221:38621-38640 Msa1427760:CDS 25.0%
!!! TTGGCTTCTTTAATTTTACT+TGG - tig0026221:38931-38950 Msa1427760:CDS 25.0%
!! AGACTAGTACTTTATCTTTT+GGG - tig0026221:38978-38997 Msa1427760:CDS 25.0%
! GACATAAGAATAAAATTGCA+AGG + tig0026221:39376-39395 Msa1427760:intergenic 25.0%
!! ACTAGTAGACAATATTTTCT+TGG + tig0026221:39439-39458 Msa1427760:intergenic 25.0%
! TTAGTGACATATAGTGAAAA+TGG - tig0026221:39493-39512 Msa1427760:intron 25.0%
! CAAAAACTGAAGTAGATAAA+AGG + tig0026221:39722-39741 Msa1427760:intergenic 25.0%
!! CTTTTATCTACTTCAGTTTT+TGG - tig0026221:39720-39739 Msa1427760:intron 25.0%
!!! CTTTTTTGTTATTGCAATAC+TGG - tig0026221:39762-39781 Msa1427760:intron 25.0%
! CATGTATTGCCTTTATAATT+TGG - tig0026221:39869-39888 Msa1427760:intron 25.0%
!!! CCTTTATAATTTGGTTTGTT+GGG - tig0026221:39878-39897 Msa1427760:intron 25.0%
! ATGTGGAAGAATAATATTGA+TGG - tig0026221:40445-40464 Msa1427760:intron 25.0%
!! TATTGATGGTTTATGAATGT+AGG - tig0026221:40459-40478 Msa1427760:intron 25.0%
!! GAAACAGTTTGATATTTTGT+AGG - tig0026221:40481-40500 Msa1427760:intron 25.0%
ATTAAGATACAGTAGTGAGA+GGG - tig0026221:37051-37070 Msa1427760:CDS 30.0%
!!! GTTTTGACTTACTCTTGATA+TGG + tig0026221:37337-37356 Msa1427760:intergenic 30.0%
! TGGAAAATTTAAAGTCAGCT+AGG - tig0026221:37432-37451 Msa1427760:CDS 30.0%
ACATCAACATCACTAATGTT+TGG + tig0026221:37458-37477 Msa1427760:intergenic 30.0%
TTAGTGATGTTGATGTTGAT+CGG - tig0026221:37462-37481 Msa1427760:intron 30.0%
!!! ACATGATTTTTTAACCACTC+TGG + tig0026221:37506-37525 Msa1427760:intergenic 30.0%
TTATACTTAACATTGCTTGG+GGG - tig0026221:37641-37660 Msa1427760:intron 30.0%
CATGTGTGTACTATATTCAA+TGG + tig0026221:37667-37686 Msa1427760:intergenic 30.0%
CATTGAATATAGTACACACA+TGG - tig0026221:37665-37684 Msa1427760:intron 30.0%
!!! TGGCCTATTTATTTTGTCAA+TGG - tig0026221:37685-37704 Msa1427760:intron 30.0%
! TTCATTTGCTTTGAACTAGA+AGG + tig0026221:37780-37799 Msa1427760:intergenic 30.0%
!!! ATGGGATAAAATTTTCAGGT+TGG + tig0026221:37992-38011 Msa1427760:intergenic 30.0%
! CCAAATGGGATAAAATTTTC+AGG + tig0026221:37996-38015 Msa1427760:intergenic 30.0%
! CCTGAAAATTTTATCCCATT+TGG - tig0026221:37993-38012 Msa1427760:intron 30.0%
TCTTTAGTCTCATTATCATC+AGG + tig0026221:38234-38253 Msa1427760:intergenic 30.0%
TGAGACTAAAGATATATCGA+AGG - tig0026221:38242-38261 Msa1427760:intron 30.0%
CAACATTTCCAATTGTTGTA+AGG + tig0026221:38291-38310 Msa1427760:intergenic 30.0%
AAGAAATGTGGTTTAATGAG+TGG - tig0026221:38325-38344 Msa1427760:intron 30.0%
AGAAATGTGGTTTAATGAGT+GGG - tig0026221:38326-38345 Msa1427760:intron 30.0%
CAGAAAAACTACAAATGGAT+TGG - tig0026221:38442-38461 Msa1427760:intron 30.0%
GGATCTACTAAGAAAGATAA+TGG - tig0026221:38510-38529 Msa1427760:intron 30.0%
! TAGTTGATTCTTAGATCCTT+GGG + tig0026221:38689-38708 Msa1427760:intergenic 30.0%
! TTAGTTGATTCTTAGATCCT+TGG + tig0026221:38690-38709 Msa1427760:intergenic 30.0%
ACTAAAGCATGAACTTGAAT+TGG - tig0026221:38705-38724 Msa1427760:intron 30.0%
TGTTTAAAAAATGTCACACC+AGG - tig0026221:38848-38867 Msa1427760:CDS 30.0%
AGTTGATCTCTTATCAACAA+AGG + tig0026221:38887-38906 Msa1427760:intergenic 30.0%
ATATGTGAGTATCAAGCTAT+TGG - tig0026221:38912-38931 Msa1427760:CDS 30.0%
!! TTTACTTGGTTTGTGTAAGT+AGG - tig0026221:38945-38964 Msa1427760:CDS 30.0%
! GAGACTAGTACTTTATCTTT+TGG - tig0026221:38977-38996 Msa1427760:CDS 30.0%
!! TTTATCTTTTGGGTCTGTTT+TGG - tig0026221:38988-39007 Msa1427760:CDS 30.0%
!! TGAGATTTTGAGTATGAGAA+TGG + tig0026221:39030-39049 Msa1427760:intergenic 30.0%
TTTGCACCAATTGCTATATT+CGG + tig0026221:39058-39077 Msa1427760:intergenic 30.0%
TATGCATACAAACTCTACTT+TGG - tig0026221:39282-39301 Msa1427760:intron 30.0%
ATAAATCCATCCAAAAGTCA+AGG + tig0026221:39349-39368 Msa1427760:intergenic 30.0%
ATATACCTCTCAGATTCATT+GGG + tig0026221:39407-39426 Msa1427760:intergenic 30.0%
! ATTGTCTACTAGTGTGTTTT+TGG - tig0026221:39446-39465 Msa1427760:intron 30.0%
GAAAAAATTCACAATGCCTA+CGG - tig0026221:39608-39627 Msa1427760:intron 30.0%
AGAAAAAATAAACAGACCGT+AGG + tig0026221:39627-39646 Msa1427760:intergenic 30.0%
!!! TTTTGGCTTGCATTTATGTT+TGG - tig0026221:39737-39756 Msa1427760:intron 30.0%
!!! TTTTGTTATTGCAATACTGG+TGG - tig0026221:39765-39784 Msa1427760:intron 30.0%
TATGATTCTAGTAATGTCTG+AGG - tig0026221:39801-39820 Msa1427760:intron 30.0%
!! GCCTTTATAATTTGGTTTGT+TGG - tig0026221:39877-39896 Msa1427760:intron 30.0%
CCCAACAAACCAAATTATAA+AGG + tig0026221:39881-39900 Msa1427760:intergenic 30.0%
TTTGTTGGGATGTTCTATTT+AGG - tig0026221:39892-39911 Msa1427760:intron 30.0%
TTAAGAAGGCAAATTAAGGA+GGG + tig0026221:39932-39951 Msa1427760:intergenic 30.0%
TTTAAGAAGGCAAATTAAGG+AGG + tig0026221:39933-39952 Msa1427760:intergenic 30.0%
CAGTTTAAGAAGGCAAATTA+AGG + tig0026221:39936-39955 Msa1427760:intergenic 30.0%
GTATCATAATCAATAGGCTT+GGG + tig0026221:40087-40106 Msa1427760:intergenic 30.0%
TGTATCATAATCAATAGGCT+TGG + tig0026221:40088-40107 Msa1427760:intergenic 30.0%
AATTATACTGATATTGCACG+TGG - tig0026221:40219-40238 Msa1427760:intron 30.0%
! ACAAACAATCGATTCCATTA+AGG - tig0026221:40293-40312 Msa1427760:intron 30.0%
ATTTGCATGTTTAGCAAATG+CGG + tig0026221:40340-40359 Msa1427760:intergenic 30.0%
!! TTTAACCATTTTAGGTGTTG+AGG - tig0026221:40524-40543 Msa1427760:intron 30.0%
TATTTCCTCAACACCTAAAA+TGG + tig0026221:40532-40551 Msa1427760:intergenic 30.0%
! GCTTTTCTACAATAATGCCT+TGG - tig0026221:36862-36881 Msa1427760:three_prime_UTR 35.0%
GATTAAGATACAGTAGTGAG+AGG - tig0026221:37050-37069 Msa1427760:CDS 35.0%
TTAAGATACAGTAGTGAGAG+GGG - tig0026221:37052-37071 Msa1427760:CDS 35.0%
TCGAAAATGAATTTCCAGAG+TGG - tig0026221:37489-37508 Msa1427760:intron 35.0%
! ACTTCTAAGAATGCTCATCT+TGG - tig0026221:37732-37751 Msa1427760:intron 35.0%
TTTGAACTAGAAGGAATGGA+CGG + tig0026221:37771-37790 Msa1427760:intergenic 35.0%
! TTGCTTTGAACTAGAAGGAA+TGG + tig0026221:37775-37794 Msa1427760:intergenic 35.0%
ACACTTGGATTACTTGATGA+TGG + tig0026221:37840-37859 Msa1427760:intergenic 35.0%
!! ATTGGTGATGTTGGATATTG+TGG + tig0026221:37915-37934 Msa1427760:intergenic 35.0%
ATCTTCTTATGTTTGTGGCA+CGG + tig0026221:37955-37974 Msa1427760:intergenic 35.0%
TCATAATCCACATCTACCAT+GGG - tig0026221:38037-38056 Msa1427760:intron 35.0%
AAGTGTCAGAAAAACCCAAA+TGG - tig0026221:38548-38567 Msa1427760:CDS 35.0%
ACAGCTTCAGTAATCCATTT+GGG + tig0026221:38565-38584 Msa1427760:intergenic 35.0%
AGTAATCGTGATTCAGATGT+CGG - tig0026221:38649-38668 Msa1427760:intron 35.0%
CTAAACAAGTGCAGAACAAA+AGG - tig0026221:38797-38816 Msa1427760:CDS 35.0%
TTAGGAAGAATTCCACACAA+GGG - tig0026221:38820-38839 Msa1427760:CDS 35.0%
TAAAAAATGTCACACCAGGA+AGG - tig0026221:38852-38871 Msa1427760:CDS 35.0%
AAAAAATGTCACACCAGGAA+GGG - tig0026221:38853-38872 Msa1427760:CDS 35.0%
ACATCTCCGAATATAGCAAT+TGG - tig0026221:39049-39068 Msa1427760:intron 35.0%
GAATATAGCAATTGGTGCAA+AGG - tig0026221:39057-39076 Msa1427760:intron 35.0%
GATGCATACAAACTCTACTT+TGG - tig0026221:39210-39229 Msa1427760:CDS 35.0%
! TGTCTTTTGTCCTTGACTTT+TGG - tig0026221:39336-39355 Msa1427760:intron 35.0%
! TTTTGTCCTTGACTTTTGGA+TGG - tig0026221:39340-39359 Msa1427760:intron 35.0%
TCAGATTCATTGGGGAAAAA+TGG + tig0026221:39398-39417 Msa1427760:intergenic 35.0%
TATACCTCTCAGATTCATTG+GGG + tig0026221:39406-39425 Msa1427760:intergenic 35.0%
GATATACCTCTCAGATTCAT+TGG + tig0026221:39408-39427 Msa1427760:intergenic 35.0%
AGATATATTATCGGCAACTG+TGG - tig0026221:39696-39715 Msa1427760:CDS 35.0%
TTATTGCAATACTGGTGGTT+TGG - tig0026221:39770-39789 Msa1427760:intron 35.0%
!! GTAATCGAGTGACTTGTTAT+AGG - tig0026221:39843-39862 Msa1427760:intron 35.0%
ACAAGCAACACAGTTTAAGA+AGG + tig0026221:39946-39965 Msa1427760:intergenic 35.0%
ACACTAATGATTGAAGCTGT+TGG - tig0026221:40105-40124 Msa1427760:intron 35.0%
AATGCAAAGGGTAGAGTATA+TGG - tig0026221:40135-40154 Msa1427760:intron 35.0%
ATGCAAAGGGTAGAGTATAT+GGG - tig0026221:40136-40155 Msa1427760:intron 35.0%
!!! TTTGTTTTGACGAGCCTTAA+TGG + tig0026221:40310-40329 Msa1427760:intergenic 35.0%
CAACATCCAAAGCGTAATAC+TGG - tig0026221:36764-36783 Msa1427760:three_prime_UTR 40.0%
CATACACCAGTATTACGCTT+TGG + tig0026221:36773-36792 Msa1427760:intergenic 40.0%
TAATCCAAAAGGGACAACCA+AGG + tig0026221:36882-36901 Msa1427760:intergenic 40.0%
! ACTTCTAAGAATGCTCCTCT+TGG - tig0026221:37801-37820 Msa1427760:intron 40.0%
!! GGATTACTTGATGATGGAGT+AGG + tig0026221:37834-37853 Msa1427760:intergenic 40.0%
!! GAAGTACTGAGATGAACACT+TGG + tig0026221:37855-37874 Msa1427760:intergenic 40.0%
GATCTCTCTGTTATAGGAGA+TGG + tig0026221:37885-37904 Msa1427760:intergenic 40.0%
GATGTTGGATATTGTGGAGT+CGG + tig0026221:37909-37928 Msa1427760:intergenic 40.0%
!! TCTGTGTCTATTGGTGATGT+TGG + tig0026221:37924-37943 Msa1427760:intergenic 40.0%
! CATGGTAGATGTGGATTATG+AGG + tig0026221:38038-38057 Msa1427760:intergenic 40.0%
CTCATAATCCACATCTACCA+TGG - tig0026221:38036-38055 Msa1427760:intron 40.0%
CATAATCCACATCTACCATG+GGG - tig0026221:38038-38057 Msa1427760:intron 40.0%
! TTGATGGCCCTTACAACAAT+TGG - tig0026221:38280-38299 Msa1427760:intron 40.0%
AATGTGGTTTAATGAGTGGG+CGG - tig0026221:38329-38348 Msa1427760:intron 40.0%
!! CTACAAATGGATTGGTGAAC+AGG - tig0026221:38450-38469 Msa1427760:intron 40.0%
TGAACAGGAGGCAACTATTA+GGG - tig0026221:38465-38484 Msa1427760:intron 40.0%
!! CTTAGCTTTTGATTCCCATG+TGG + tig0026221:38491-38510 Msa1427760:intergenic 40.0%
CACATGGGAATCAAAAGCTA+AGG - tig0026221:38489-38508 Msa1427760:intron 40.0%
CACAGCTTCAGTAATCCATT+TGG + tig0026221:38566-38585 Msa1427760:intergenic 40.0%
!! AATGGATTACTGAAGCTGTG+TGG - tig0026221:38566-38585 Msa1427760:CDS 40.0%
! ATGGATTACTGAAGCTGTGT+GGG - tig0026221:38567-38586 Msa1427760:CDS 40.0%
CAAGTGCAGAACAAAAGGTT+AGG - tig0026221:38802-38821 Msa1427760:CDS 40.0%
GTTAGGAAGAATTCCACACA+AGG - tig0026221:38819-38838 Msa1427760:CDS 40.0%
TTAAACAGTTCTCCCTTGTG+TGG + tig0026221:38835-38854 Msa1427760:intergenic 40.0%
AAAAATGTCACACCAGGAAG+GGG - tig0026221:38854-38873 Msa1427760:CDS 40.0%
! TTTTCCCCAATGAATCTGAG+AGG - tig0026221:39399-39418 Msa1427760:CDS 40.0%
CTAATGATTGAAGCTGTTGG+AGG - tig0026221:40108-40127 Msa1427760:intron 40.0%
TGTTGGAGGAAGAAATGCAA+AGG - tig0026221:40122-40141 Msa1427760:intron 40.0%
GTTGGAGGAAGAAATGCAAA+GGG - tig0026221:40123-40142 Msa1427760:intron 40.0%
! TAGAGTATATGGGCTTGGTT+TGG - tig0026221:40146-40165 Msa1427760:intron 40.0%
!! TCTGTTGATAATGCTACTCG+TGG - tig0026221:40399-40418 Msa1427760:intron 40.0%
! CTGGTGTATGATTTTAGGCG+TGG - tig0026221:36783-36802 Msa1427760:three_prime_UTR 45.0%
! AATGCCTTGGTTGTCCCTTT+TGG - tig0026221:36875-36894 Msa1427760:three_prime_UTR 45.0%
GGAGTAGGAATAGTACCAAG+AGG + tig0026221:37819-37838 Msa1427760:intergenic 45.0%
GTCGGTGATCTCTCTGTTAT+AGG + tig0026221:37891-37910 Msa1427760:intergenic 45.0%
GTCTCAGACTCTGTGTCTAT+TGG + tig0026221:37933-37952 Msa1427760:intergenic 45.0%
GTAAGGTAGGGTCTCCAAAT+GGG + tig0026221:38010-38029 Msa1427760:intergenic 45.0%
TATGAGGACCAGGTAAGGTA+GGG + tig0026221:38022-38041 Msa1427760:intergenic 45.0%
TTATGAGGACCAGGTAAGGT+AGG + tig0026221:38023-38042 Msa1427760:intergenic 45.0%
TGGATTATGAGGACCAGGTA+AGG + tig0026221:38027-38046 Msa1427760:intergenic 45.0%
! AGATGTGGATTATGAGGACC+AGG + tig0026221:38032-38051 Msa1427760:intergenic 45.0%
TCAGTAAGATCTTTGCCCCA+TGG + tig0026221:38056-38075 Msa1427760:intergenic 45.0%
!! CAAATGGATTGGTGAACAGG+AGG - tig0026221:38453-38472 Msa1427760:intron 45.0%
GTGAACAGGAGGCAACTATT+AGG - tig0026221:38464-38483 Msa1427760:intron 45.0%
AATCGTGATTCAGATGTCGG+AGG - tig0026221:38652-38671 Msa1427760:intron 45.0%
TGAGTCTCAACCTCATCCTT+TGG - tig0026221:40032-40051 Msa1427760:intron 45.0%
TCATCATTACCAGCCTCCAA+AGG + tig0026221:40051-40070 Msa1427760:intergenic 45.0%
AAGGGTAGAGTATATGGGCT+TGG - tig0026221:40141-40160 Msa1427760:intron 45.0%
!! GTATATGGGCTTGGTTTGGA+TGG - tig0026221:40150-40169 Msa1427760:intron 45.0%
TGGATTTAGACGTTGAGCCA+CGG + tig0026221:40188-40207 Msa1427760:intergenic 45.0%
GATATTGCACGTGGTATGAG+TGG - tig0026221:40228-40247 Msa1427760:intron 45.0%
CGTGGAAGCAATGCAAATGT+TGG - tig0026221:40417-40436 Msa1427760:intron 45.0%
!! TGCAAATGTTGGTGCTGATG+TGG - tig0026221:40428-40447 Msa1427760:intron 45.0%
CTAGAAGGAATGGACGGAGT+AGG + tig0026221:37765-37784 Msa1427760:intergenic 50.0%
GGTAAGGTAGGGTCTCCAAA+TGG + tig0026221:38011-38030 Msa1427760:intergenic 50.0%
TTTGGAGACCCTACCTTACC+TGG - tig0026221:38011-38030 Msa1427760:intron 50.0%
TCTTTGCCCCATGGTAGATG+TGG + tig0026221:38047-38066 Msa1427760:intergenic 50.0%
AGGCAACTATTAGGGCCACA+TGG - tig0026221:38473-38492 Msa1427760:intron 50.0%
GGCAACTATTAGGGCCACAT+GGG - tig0026221:38474-38493 Msa1427760:intron 50.0%
GGCACAACTGCTTGCAATGT+GGG - tig0026221:38588-38607 Msa1427760:CDS 50.0%
GCACAACTGCTTGCAATGTG+GGG - tig0026221:38589-38608 Msa1427760:CDS 50.0%
AAAGGTTTGTGACCCCTTCC+TGG + tig0026221:38869-38888 Msa1427760:intergenic 50.0%
GTCTCAACCTCATCCTTTGG+AGG - tig0026221:40035-40054 Msa1427760:intron 50.0%
TTACCAGCCTCCAAAGGATG+AGG + tig0026221:40045-40064 Msa1427760:intergenic 50.0%
! GAGGCTGGTAATGATGAGAG+TGG - tig0026221:40054-40073 Msa1427760:intron 50.0%
GGATTTAGACGTTGAGCCAC+GGG + tig0026221:40187-40206 Msa1427760:intergenic 50.0%
TGGTATGAGTGGAGAGGTTG+AGG - tig0026221:40239-40258 Msa1427760:intron 50.0%
AATCAACCTGGCAGAGCAGC+AGG - tig0026221:37229-37248 Msa1427760:CDS 55.0%
GCAGAGCAGCAGGACAACAA+AGG - tig0026221:37239-37258 Msa1427760:CDS 55.0%
GAGTGGGCGGTAATGCATCT+TGG - tig0026221:38342-38361 Msa1427760:intron 55.0%
GGGCACAACTGCTTGCAATG+TGG - tig0026221:38587-38606 Msa1427760:CDS 55.0%
GGAGGTTCATTGCACACCCA+AGG - tig0026221:38670-38689 Msa1427760:intron 55.0%
! CAACCTCATCCTTTGGAGGC+TGG - tig0026221:40039-40058 Msa1427760:intron 55.0%
TGCACGTGGTATGAGTGGAG+AGG - tig0026221:40233-40252 Msa1427760:intron 55.0%
GAGAGGTTGAGGCGCGTTTA+AGG - tig0026221:40250-40269 Msa1427760:intron 55.0%
TGTTGTCCTGCTGCTCTGCC+AGG + tig0026221:37238-37257 Msa1427760:intergenic 60.0%
GGAATGGACGGAGTAGGAGC+AGG + tig0026221:37759-37778 Msa1427760:intergenic 60.0%
GATGGCAGCATGCGCACCCG+TGG - tig0026221:40168-40187 Msa1427760:intron 70.0%
Chromosome Type Strat End Strand Name
tig0026221 gene 36754 40705 36754 ID=Msa1427760;Name=Msa1427760
tig0026221 mRNA 36754 40705 36754 ID=Msa1427760-mRNA-1;Parent=Msa1427760;Name=Msa1427760-mRNA-1;_AED=0.26;_eAED=0.27;_QI=0|0.57|0.62|1|0.57|0.62|8|247|435
tig0026221 exon 36754 37456 36754 ID=Msa1427760-mRNA-1:exon:5599;Parent=Msa1427760-mRNA-1
tig0026221 exon 38544 38648 38544 ID=Msa1427760-mRNA-1:exon:5598;Parent=Msa1427760-mRNA-1
tig0026221 exon 38733 39014 38733 ID=Msa1427760-mRNA-1:exon:5597;Parent=Msa1427760-mRNA-1
tig0026221 exon 39109 39235 39109 ID=Msa1427760-mRNA-1:exon:5596;Parent=Msa1427760-mRNA-1
tig0026221 exon 39351 39441 39351 ID=Msa1427760-mRNA-1:exon:5595;Parent=Msa1427760-mRNA-1
tig0026221 exon 39613 39736 39613 ID=Msa1427760-mRNA-1:exon:5594;Parent=Msa1427760-mRNA-1
tig0026221 exon 39936 40035 39936 ID=Msa1427760-mRNA-1:exon:5593;Parent=Msa1427760-mRNA-1
tig0026221 exon 40683 40705 40683 ID=Msa1427760-mRNA-1:exon:5592;Parent=Msa1427760-mRNA-1
tig0026221 CDS 40683 40705 40683 ID=Msa1427760-mRNA-1:cds;Parent=Msa1427760-mRNA-1
tig0026221 CDS 39936 40035 39936 ID=Msa1427760-mRNA-1:cds;Parent=Msa1427760-mRNA-1
tig0026221 CDS 39613 39736 39613 ID=Msa1427760-mRNA-1:cds;Parent=Msa1427760-mRNA-1
tig0026221 CDS 39351 39441 39351 ID=Msa1427760-mRNA-1:cds;Parent=Msa1427760-mRNA-1
tig0026221 CDS 39109 39235 39109 ID=Msa1427760-mRNA-1:cds;Parent=Msa1427760-mRNA-1
tig0026221 CDS 38733 39014 38733 ID=Msa1427760-mRNA-1:cds;Parent=Msa1427760-mRNA-1
tig0026221 CDS 38544 38648 38544 ID=Msa1427760-mRNA-1:cds;Parent=Msa1427760-mRNA-1
tig0026221 CDS 37001 37456 37001 ID=Msa1427760-mRNA-1:cds;Parent=Msa1427760-mRNA-1
tig0026221 three_prime_UTR 36754 37000 36754 ID=Msa1427760-mRNA-1:three_prime_utr;Parent=Msa1427760-mRNA-1
Gene Sequence

>Msa1427760

ATGAGGGTTTCAACATCCAAAGCTTTATTTGTGGAAAATTTAAAGTCAGCTAGGCCAAACATTAGTGATGTTGATGTTGATCGGTGTATCGAAAATGAATTTCCAGAGTGGTTAAAAAATCATCAAATGAACACTTCTAAGAATGCTCATCTTGGTCCTGCTCCTACTCCGTCCATTCCTTCTAGTTCAAAGCAAATGAACACTTCTAAGAATGCTCCTCTTGGTACTATTCCTACTCCATCATCAAACCCTACCTTACCTGGTCCTCATAATCCACATCTACCATGGGGCAAAGATCTTACTGATAACAAAATTTGGACTTATACTCTTAAAGGATACTTTTATCCTGATGATAATGAGACTAAAGATATATCGAAGGCAATTAAATCTATCTTTGATGGCCCTTACAACAATTGGAAATGTTGCAATGATAAAATAAAAGAAATGTGGTTTAATGAGTGGGCGAAAAACTACAAATGGATTGGTGAACAGGAGGCAACTATTAGGGCCACATGGGAATCAAAAGCTAAGGATCTACTAAGAAAGATAATGGCGAGAGTACGTGAAAAAGTGTCAGAAAAACCCAAATGGATTACTGAAGCTGTGTGGGCACAACTGCTTGCAATGTGGGGAGATGATCATTACATTACAAATAGATGTGTGGCAGCTAGTAATCGTGATTCAGATGTCGGAGGTTCATTGCACACCCAAGGATCTAAGAATCAACTAAAGCATGAACTTGAATTGAACAAAAGGTTAGGAAGAATTCCACACAAGGGAGAACTGTTTAAAAAATGTCACACCAGGAAGGGGTCACAAACCTTTGTTGATAAGAGATCAACTGATGCATATAAAAACTTTGTAAATCTCTGTTCACAAGCTGAGTCTCAACCTCATCCTTTGGAGGCTGGTAATGATGAGAGTGGTACTCAACCCAAGCCTATTGATTATGATACACTAATGATTGAAGCTGTTGGAGGAAGAAATGCAAAGGGTAGAGTATATGGGCTTGGTTTGGATGGCAGCATGCGCACCCGTGGCTCAACGTCTAAATCCAATAAATATTCAAATTATACTGATATTGCACGTGGTATGAGTGGAGAGGTTGAGGCGCGTTTAAGGAAAAAAATTGCAGAGCAACAACAAACAATCGATTCCATTAAGGCTCGTCAAAACAAAATGATTGCCGCATTTGCTAAACATGCAAATATAGATTTGGATTTAATGGATTTAGATGAAGATGATCACTCTGTTGATAATGCTACTCGTGGAAGCAATGCAAATGTTGGTGCTGATGTGGAAGAATAA

Protein sequence

>Msa1427760

MRVSTSKALFVENLKSARPNISDVDVDRCIENEFPEWLKNHQMNTSKNAHLGPAPTPSIPSSSKQMNTSKNAPLGTIPTPSSNPTLPGPHNPHLPWGKDLTDNKIWTYTLKGYFYPDDNETKDISKAIKSIFDGPYNNWKCCNDKIKEMWFNEWAKNYKWIGEQEATIRATWESKAKDLLRKIMARVREKVSEKPKWITEAVWAQLLAMWGDDHYITNRCVAASNRDSDVGGSLHTQGSKNQLKHELELNKRLGRIPHKGELFKKCHTRKGSQTFVDKRSTDAYKNFVNLCSQAESQPHPLEAGNDESGTQPKPIDYDTLMIEAVGGRNAKGRVYGLGLDGSMRTRGSTSKSNKYSNYTDIARGMSGEVEARLRKKIAEQQQTIDSIKARQNKMIAAFAKHANIDLDLMDLDEDDHSVDNATRGSNANVGADVEE*